AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0366050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0366050 MtrunA17_Chr3g0106901 91.867 332 13 2 1 331 5 323 0.0 581
Msa0366050 MtrunA17_Chr7g0244461 65.409 318 97 1 14 331 8 312 1.67e-149 422
Msa0366050 MtrunA17_Chr7g0244451 61.890 328 112 1 4 331 2 316 2.01e-141 402
Msa0366050 MtrunA17_Chr3g0129051 58.769 325 119 2 9 331 11 322 3.68e-134 384
Msa0366050 MtrunA17_Chr4g0013201 58.117 308 116 1 24 331 44 338 1.26e-133 383
Msa0366050 MtrunA17_Chr4g0013191 59.936 312 109 3 23 331 42 340 1.59e-133 383
Msa0366050 MtrunA17_Chr5g0438021 58.258 333 122 3 3 331 6 325 2.42e-133 382
Msa0366050 MtrunA17_Chr3g0114451 57.012 328 126 2 6 331 4 318 1.00e-132 380
Msa0366050 MtrunA17_Chr3g0129061 59.692 325 113 3 9 331 14 322 6.36e-130 373
Msa0366050 MtrunA17_Chr2g0320071 57.716 324 123 2 9 331 7 317 8.94e-130 373
Msa0366050 MtrunA17_Chr5g0432441 57.447 329 122 4 8 331 11 326 1.87e-128 370
Msa0366050 MtrunA17_Chr2g0320061 57.538 325 123 3 9 331 7 318 1.66e-127 367
Msa0366050 MtrunA17_Chr2g0320101 56.173 324 128 2 9 331 7 317 1.30e-126 365
Msa0366050 MtrunA17_Chr4g0038151 56.119 335 129 4 1 331 1 321 1.40e-126 365
Msa0366050 MtrunA17_Chr3g0106921 55.728 323 127 3 12 331 11 320 2.16e-126 364
Msa0366050 MtrunA17_Chr4g0043391 55.952 336 128 5 1 331 4 324 1.17e-124 360
Msa0366050 MtrunA17_Chr2g0320051 56.308 325 124 3 12 331 7 318 2.07e-124 359
Msa0366050 MtrunA17_Chr4g0038161 55.224 335 131 4 1 331 1 320 3.43e-124 358
Msa0366050 MtrunA17_Chr7g0224371 56.923 325 122 4 11 331 12 322 1.07e-123 357
Msa0366050 MtrunA17_Chr4g0038171 56.548 336 126 5 1 331 1 321 1.19e-123 357
Msa0366050 MtrunA17_Chr4g0013171 52.695 334 142 4 1 331 1 321 2.45e-123 357
Msa0366050 MtrunA17_Chr1g0213061 56.881 327 120 5 12 331 9 321 2.46e-123 357
Msa0366050 MtrunA17_Chr3g0129041 60.759 316 109 2 18 331 20 322 3.60e-123 356
Msa0366050 MtrunA17_Chr2g0320091 54.462 325 133 3 9 331 7 318 1.24e-119 347
Msa0366050 MtrunA17_Chr2g0320031 52.888 329 136 3 9 331 4 319 1.57e-119 347
Msa0366050 MtrunA17_Chr4g0013181 54.098 305 125 3 29 331 62 353 1.13e-115 338
Msa0366050 MtrunA17_Chr3g0107881 51.929 337 143 5 1 331 1 324 4.58e-115 336
Msa0366050 MtrunA17_Chr5g0432341 50.915 328 142 5 9 331 8 321 7.17e-111 325
Msa0366050 MtrunA17_Chr5g0432351 50.755 331 139 6 11 331 5 321 1.47e-110 324
Msa0366050 MtrunA17_Chr5g0432331 50.000 334 147 6 4 331 33 352 2.86e-110 325
Msa0366050 MtrunA17_Chr4g0068621 49.359 312 139 3 26 331 38 336 2.73e-100 298
Msa0366050 MtrunA17_Chr1g0175561 46.246 333 154 5 9 331 9 326 3.40e-100 298
Msa0366050 MtrunA17_Chr5g0404721 47.134 314 145 3 26 331 30 330 8.39e-100 297
Msa0366050 MtrunA17_Chr5g0402571 46.726 336 156 5 4 331 6 326 5.45e-99 295
Msa0366050 MtrunA17_Chr4g0070951 44.767 344 162 5 1 331 1 329 6.70e-99 295
Msa0366050 MtrunA17_Chr8g0372601 46.815 314 146 3 26 331 30 330 1.67e-98 294
Msa0366050 MtrunA17_Chr2g0299691 46.429 336 148 5 13 331 38 358 2.86e-96 289
Msa0366050 MtrunA17_Chr5g0402581 46.131 336 158 5 4 331 6 326 3.30e-96 288
Msa0366050 MtrunA17_Chr7g0258811 42.773 339 171 4 3 331 46 371 2.85e-93 282
Msa0366050 MtrunA17_Chr5g0400331 47.368 323 142 4 23 331 23 331 1.69e-91 276
Msa0366050 MtrunA17_Chr1g0155611 45.397 315 150 3 26 331 46 347 4.09e-91 275
Msa0366050 MtrunA17_Chr2g0292251 45.426 317 151 3 24 331 26 329 9.12e-91 275
Msa0366050 MtrunA17_Chr2g0292211 44.144 333 163 4 9 331 22 341 5.81e-90 273
Msa0366050 MtrunA17_Chr2g0292091 43.533 317 157 3 24 331 22 325 1.19e-89 271
Msa0366050 MtrunA17_Chr2g0291751 43.598 328 162 4 14 331 16 330 1.18e-88 270
Msa0366050 MtrunA17_Chr2g0292181 44.479 317 154 3 24 331 36 339 1.73e-88 269
Msa0366050 MtrunA17_Chr2g0292151 44.025 318 156 3 23 331 26 330 7.94e-88 267
Msa0366050 MtrunA17_Chr2g0292111 43.711 318 157 3 23 331 26 330 4.54e-87 265
Msa0366050 MtrunA17_Chr4g0013721 45.253 316 150 4 23 331 97 396 4.82e-87 267
Msa0366050 MtrunA17_Chr2g0292271 42.042 333 168 4 11 331 11 330 5.19e-87 265
Msa0366050 MtrunA17_Chr5g0432401 43.333 330 123 7 12 330 9 285 1.02e-86 262
Msa0366050 MtrunA17_Chr2g0292241 44.025 318 156 3 23 331 26 330 5.92e-86 263
Msa0366050 MtrunA17_Chr4g0013821 42.121 330 168 4 9 331 11 324 1.26e-85 261
Msa0366050 MtrunA17_Chr5g0421411 44.631 298 137 7 47 331 3 285 4.34e-83 253
Msa0366050 MtrunA17_Chr1g0188431 41.945 329 167 7 9 331 17 327 6.61e-83 254
Msa0366050 MtrunA17_Chr2g0292101 41.956 317 162 3 24 331 23 326 2.00e-81 251
Msa0366050 MtrunA17_Chr2g0292261 42.138 318 162 3 23 331 26 330 4.29e-81 250
Msa0366050 MtrunA17_Chr2g0292291 41.379 319 164 4 23 331 27 332 9.43e-81 249
Msa0366050 MtrunA17_Chr6g0477071 40.645 310 165 6 23 331 51 342 4.87e-77 239
Msa0366050 MtrunA17_Chr1g0204011 38.838 327 176 5 12 331 13 322 5.45e-77 238
Msa0366050 MtrunA17_Chr1g0164891 42.492 313 156 6 30 331 93 392 3.99e-74 233
Msa0366050 MtrunA17_Chr3g0128061 39.339 333 180 4 8 331 7 326 7.38e-74 231
Msa0366050 MtrunA17_Chr2g0279041 39.349 338 174 8 7 331 6 325 1.04e-73 230
Msa0366050 MtrunA17_Chr7g0254201 39.937 318 168 5 19 331 13 312 1.15e-73 230
Msa0366050 MtrunA17_Chr2g0322861 38.438 333 181 6 8 331 69 386 2.69e-73 231
Msa0366050 MtrunA17_Chr4g0024121 36.012 336 193 4 4 331 5 326 8.24e-73 228
Msa0366050 MtrunA17_Chr7g0268501 37.910 335 183 6 5 331 3 320 2.36e-71 224
Msa0366050 MtrunA17_Chr7g0268521 37.910 335 183 6 5 331 3 320 2.36e-71 224
Msa0366050 MtrunA17_Chr7g0225221 37.888 322 182 4 14 331 13 320 9.91e-71 223
Msa0366050 MtrunA17_Chr1g0194151 40.816 343 174 6 5 331 4 333 1.12e-70 223
Msa0366050 MtrunA17_Chr8g0371381 40.952 315 156 8 26 331 26 319 2.41e-70 221
Msa0366050 MtrunA17_Chr4g0063671 38.554 332 174 6 12 331 7 320 6.27e-70 220
Msa0366050 MtrunA17_Chr6g0460711 38.110 328 176 7 9 331 9 314 3.01e-69 219
Msa0366050 MtrunA17_Chr1g0157051 38.298 329 178 5 9 330 7 317 6.28e-69 218
Msa0366050 MtrunA17_Chr5g0405991 39.157 332 168 10 12 331 7 316 1.84e-68 216
Msa0366050 MtrunA17_Chr1g0197411 36.873 339 191 5 3 331 5 330 2.30e-68 217
Msa0366050 MtrunA17_Chr1g0194271 41.284 327 161 5 23 331 27 340 2.33e-68 217
Msa0366050 MtrunA17_Chr7g0254231 38.835 309 167 6 26 331 22 311 6.16e-68 215
Msa0366050 MtrunA17_Chr3g0114461 51.596 188 90 1 145 331 5 192 1.60e-65 204
Msa0366050 MtrunA17_Chr4g0076211 39.482 309 158 7 31 331 46 333 2.27e-65 209
Msa0366050 MtrunA17_Chr2g0296621 38.854 314 162 7 26 331 50 341 5.92e-65 208
Msa0366050 MtrunA17_Chr8g0364291 36.202 337 192 5 5 331 1 324 1.21e-64 207
Msa0366050 MtrunA17_Chr6g0451571 37.160 331 187 5 9 331 17 334 5.94e-64 206
Msa0366050 MtrunA17_Chr2g0316481 36.628 344 165 7 26 330 76 405 7.69e-64 207
Msa0366050 MtrunA17_Chr2g0316791 36.047 344 167 8 26 330 76 405 8.29e-64 207
Msa0366050 MtrunA17_Chr6g0467161 38.095 315 173 7 21 331 40 336 2.05e-63 204
Msa0366050 MtrunA17_Chr2g0316831 35.756 344 168 7 26 330 112 441 3.00e-62 204
Msa0366050 MtrunA17_Chr2g0278671 38.438 320 169 6 23 331 21 323 3.43e-62 201
Msa0366050 MtrunA17_Chr6g0467251 36.556 331 182 7 9 327 10 324 5.53e-62 201
Msa0366050 MtrunA17_Chr2g0316191 35.652 345 168 7 26 330 76 406 7.24e-62 202
Msa0366050 MtrunA17_Chr4g0046131 35.447 347 189 8 3 327 9 342 8.99e-60 195
Msa0366050 MtrunA17_Chr2g0311251 34.884 344 170 7 26 330 11 339 1.29e-59 194
Msa0366050 MtrunA17_Chr3g0136751 35.736 333 186 5 10 331 7 322 1.06e-58 192
Msa0366050 MtrunA17_Chr5g0401431 34.146 328 193 4 10 327 11 325 2.73e-58 191
Msa0366050 MtrunA17_Chr2g0329641 34.188 351 190 8 4 331 3 335 3.50e-58 191
Msa0366050 MtrunA17_Chr2g0311241 33.247 385 162 9 26 330 60 429 1.30e-57 192
Msa0366050 MtrunA17_Chr4g0053871 34.139 331 196 5 6 327 3 320 5.21e-57 187
Msa0366050 MtrunA17_Chr1g0148021 34.545 330 192 6 12 331 13 328 6.36e-57 187
Msa0366050 MtrunA17_Chr2g0279061 40.769 260 138 5 83 331 12 266 1.48e-56 184
Msa0366050 MtrunA17_Chr4g0075241 33.866 313 188 3 25 331 28 327 3.25e-56 185
Msa0366050 MtrunA17_Chr5g0413051 35.802 324 177 8 23 331 70 377 8.08e-56 186
Msa0366050 MtrunA17_Chr4g0072091 33.754 317 184 6 25 331 23 323 2.65e-53 177
Msa0366050 MtrunA17_Chr1g0181431 32.588 313 192 4 24 331 25 323 3.81e-53 177
Msa0366050 MtrunA17_Chr6g0467121 34.628 309 180 7 26 331 74 363 1.27e-52 177
Msa0366050 MtrunA17_Chr1g0181511 33.019 318 186 5 23 331 24 323 6.51e-52 174
Msa0366050 MtrunA17_Chr1g0181481 32.484 314 193 4 23 331 24 323 9.15e-52 174
Msa0366050 MtrunA17_Chr4g0074851 32.132 333 196 7 10 327 7 324 2.93e-49 167
Msa0366050 MtrunA17_Chr4g0004591 31.627 332 147 5 26 330 77 355 2.87e-48 165
Msa0366050 MtrunA17_Chr3g0114491 62.602 123 33 1 25 147 17 126 5.05e-47 155
Msa0366050 MtrunA17_Chr2g0316141 36.567 268 147 6 85 330 11 277 1.26e-44 154
Msa0366050 MtrunA17_Chr2g0316181 36.567 268 147 6 85 330 11 277 1.26e-44 154
Msa0366050 MtrunA17_Chr2g0292281 37.619 210 112 4 131 331 17 216 3.51e-42 146
Msa0366050 MtrunA17_Chr2g0316811 35.600 250 122 6 26 251 50 284 1.35e-40 145
Msa0366050 MtrunA17_Chr5g0432321 47.863 117 60 1 160 276 17 132 1.43e-32 117
Msa0366050 MtrunA17_Chr5g0432361 45.133 113 54 3 220 330 2 108 1.82e-25 98.6
Msa0366050 MtrunA17_Chr3g0104101 40.141 142 71 5 203 331 9 149 1.18e-23 95.1
Msa0366050 MtrunA17_Chr7g0254181 44.762 105 54 2 101 205 22 122 8.97e-21 87.4
Msa0366050 MtrunA17_Chr1g0181501 28.723 188 128 3 149 331 3 189 3.49e-20 86.7
Msa0366050 MtrunA17_Chr6g0468731 56.627 83 19 3 65 147 22 87 7.13e-19 80.1
Msa0366050 MtrunA17_Chr2g0316771 29.609 179 89 3 186 327 4 182 1.66e-17 79.3
Msa0366050 MtrunA17_Chr3g0137751 28.625 269 116 9 58 312 106 312 5.51e-17 80.5
Msa0366050 MtrunA17_Chr1g0181491 37.600 125 59 4 24 146 10 117 7.33e-17 76.6
Msa0366050 MtrunA17_Chr4g0013811 44.595 74 41 0 150 223 6 79 6.21e-16 72.0
Msa0366050 MtrunA17_Chr3g0124821 26.923 260 158 8 60 313 121 354 4.16e-14 72.4
Msa0366050 MtrunA17_Chr1g0196191 58.065 62 25 1 85 146 31 91 1.68e-13 67.4
Msa0366050 MtrunA17_Chr7g0254171 41.096 73 42 1 84 156 3 74 2.64e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0366050 AT5G05340.1 60.383 313 109 2 21 331 25 324 1.14e-132 381
Msa0366050 AT5G58400.1 55.215 326 127 5 9 331 16 325 1.42e-118 345
Msa0366050 AT5G58390.1 53.067 326 137 3 9 331 4 316 1.05e-114 335
Msa0366050 AT1G14550.1 50.602 332 145 5 6 331 3 321 1.25e-111 327
Msa0366050 AT1G14540.1 50.464 323 145 3 11 331 6 315 3.70e-108 318
Msa0366050 AT5G06720.1 47.576 330 151 3 11 331 17 333 3.51e-104 309
Msa0366050 AT4G36430.1 45.253 316 152 3 24 331 28 330 1.53e-100 299
Msa0366050 AT2G18150.1 45.484 310 148 3 30 331 40 336 6.42e-100 298
Msa0366050 AT2G18140.1 45.223 314 151 3 26 331 35 335 7.84e-99 295
Msa0366050 AT5G06730.1 44.776 335 159 4 10 331 13 334 3.36e-96 289
Msa0366050 AT3G50990.1 45.886 316 150 3 24 331 39 341 9.65e-96 288
Msa0366050 AT5G66390.1 45.541 314 150 3 26 331 33 333 3.90e-95 286
Msa0366050 AT1G44970.1 46.667 315 146 3 26 331 45 346 3.02e-94 284
Msa0366050 AT5G19890.1 48.358 335 141 9 9 331 13 327 1.30e-93 281
Msa0366050 AT4G08770.1 44.444 324 156 4 19 331 17 327 1.71e-93 282
Msa0366050 AT4G16270.1 49.355 310 134 5 30 331 54 348 2.56e-93 281
Msa0366050 AT4G08780.1 43.210 324 160 4 19 331 17 327 1.87e-91 277
Msa0366050 AT1G49570.1 45.886 316 148 4 22 327 44 346 1.20e-90 275
Msa0366050 AT2G38380.1 45.455 319 151 4 23 331 28 333 1.54e-90 275
Msa0366050 AT3G32980.1 43.344 323 159 5 20 331 25 334 1.99e-89 272
Msa0366050 AT1G68850.1 40.116 344 172 7 9 331 5 335 7.89e-89 270
Msa0366050 AT2G38390.1 44.201 319 155 4 23 331 28 333 3.21e-88 268
Msa0366050 AT3G49110.1 42.415 323 162 5 20 331 27 336 8.23e-87 265
Msa0366050 AT3G49120.1 42.105 323 163 5 20 331 26 335 2.09e-86 264
Msa0366050 AT2G22420.1 43.072 332 163 7 8 331 6 319 1.17e-85 261
Msa0366050 AT2G35380.1 45.455 319 148 4 26 331 30 335 7.47e-85 259
Msa0366050 AT5G19880.1 42.985 335 164 5 9 331 10 329 2.52e-82 253
Msa0366050 AT4G33420.1 43.322 307 155 6 26 331 37 325 2.29e-78 243
Msa0366050 AT4G33420.2 43.322 307 155 6 26 331 84 372 1.48e-77 242
Msa0366050 AT1G05260.1 38.720 328 177 6 13 331 13 325 6.56e-75 234
Msa0366050 AT5G17820.1 40.673 327 164 6 12 331 10 313 9.05e-75 233
Msa0366050 AT5G64120.1 40.909 308 158 5 30 331 39 328 3.34e-74 232
Msa0366050 AT5G17820.2 40.673 327 164 6 12 331 63 366 4.88e-74 233
Msa0366050 AT1G05240.1 39.241 316 166 6 22 327 22 321 7.02e-74 231
Msa0366050 AT1G05250.1 39.241 316 166 6 22 327 22 321 7.02e-74 231
Msa0366050 AT5G51890.1 39.521 334 172 8 10 331 7 322 2.00e-73 230
Msa0366050 AT3G01190.1 39.939 328 171 7 12 331 12 321 4.31e-73 229
Msa0366050 AT4G11290.1 36.937 333 186 6 9 331 8 326 9.99e-73 228
Msa0366050 AT5G15180.1 37.609 343 185 7 2 331 3 329 1.13e-72 228
Msa0366050 AT3G03670.1 39.403 335 181 4 5 331 1 321 1.38e-72 228
Msa0366050 AT5G40150.1 40.895 313 168 4 23 331 29 328 3.37e-72 227
Msa0366050 AT1G71695.1 40.193 311 166 6 26 331 44 339 1.59e-71 226
Msa0366050 AT2G41480.1 38.576 337 177 6 7 331 10 328 4.12e-71 224
Msa0366050 AT5G14130.1 37.160 331 183 6 10 331 16 330 1.84e-70 223
Msa0366050 AT3G21770.1 38.509 322 174 6 15 327 18 324 2.60e-70 222
Msa0366050 AT5G14130.2 37.160 331 183 6 10 331 57 371 5.74e-70 223
Msa0366050 AT5G42180.1 37.725 334 182 6 5 330 1 316 1.18e-69 220
Msa0366050 AT3G28200.1 39.103 312 174 4 23 331 18 316 6.38e-69 218
Msa0366050 AT4G26010.1 38.820 322 176 7 12 331 7 309 7.39e-69 218
Msa0366050 AT4G26010.2 38.820 322 176 7 12 331 35 337 1.59e-68 218
Msa0366050 AT4G33870.1 35.549 346 167 5 26 329 68 399 6.67e-68 218
Msa0366050 AT5G39580.1 40.181 331 169 7 12 331 7 319 9.79e-68 215
Msa0366050 AT1G34510.1 37.267 322 182 6 11 331 7 309 3.08e-65 208
Msa0366050 AT5G47000.1 37.500 336 190 5 2 331 9 330 5.76e-65 208
Msa0366050 AT2G35380.2 45.902 244 119 3 101 331 4 247 7.50e-65 205
Msa0366050 AT4G17690.1 37.812 320 180 5 17 331 17 322 1.76e-63 204
Msa0366050 AT1G77100.1 38.973 331 175 10 11 331 6 319 1.07e-62 202
Msa0366050 AT4G37530.1 36.050 319 181 4 19 327 20 325 2.17e-62 202
Msa0366050 AT4G31760.1 37.349 332 182 4 9 331 12 326 3.49e-62 201
Msa0366050 AT1G30870.1 37.855 317 164 8 26 331 51 345 3.63e-61 199
Msa0366050 AT2G18980.1 36.667 330 180 5 13 331 12 323 4.33e-61 198
Msa0366050 AT4G30170.1 36.280 328 166 7 22 331 23 325 5.12e-60 195
Msa0366050 AT5G67400.1 35.312 320 184 4 18 327 19 325 5.99e-59 193
Msa0366050 AT1G24110.1 34.954 329 191 5 12 331 8 322 4.10e-58 191
Msa0366050 AT4G25980.1 34.663 326 184 7 18 331 18 326 6.93e-58 190
Msa0366050 AT4G37520.1 35.669 314 179 5 24 327 25 325 9.62e-57 187
Msa0366050 AT5G64110.1 36.494 348 178 9 3 331 7 330 1.03e-56 187
Msa0366050 AT3G49960.1 34.688 320 186 4 18 327 19 325 3.06e-56 186
Msa0366050 AT2G34060.1 35.331 317 178 7 25 328 41 343 6.40e-56 185
Msa0366050 AT2G24800.1 37.423 326 161 7 24 331 29 329 8.44e-56 184
Msa0366050 AT4G37520.2 35.350 314 177 6 24 327 25 322 7.60e-55 182
Msa0366050 AT5G64100.1 35.345 348 181 10 7 331 5 331 2.37e-54 181
Msa0366050 AT3G17070.1 35.759 316 179 5 26 331 38 339 6.04e-54 180
Msa0366050 AT4G37530.2 36.996 273 149 4 19 281 20 279 1.61e-53 177
Msa0366050 AT2G39040.1 35.294 323 180 8 23 331 43 350 1.98e-53 179
Msa0366050 AT2G37130.1 33.333 321 194 5 17 331 21 327 6.24e-51 172
Msa0366050 AT2G37130.2 33.981 309 184 5 29 331 2 296 4.82e-50 169
Msa0366050 AT5G22410.1 33.133 332 190 10 9 328 11 322 7.66e-50 169
Msa0366050 AT4G21960.1 33.013 312 188 6 26 331 31 327 1.14e-49 169
Msa0366050 AT2G43480.1 33.956 321 179 8 25 331 34 335 5.12e-48 164
Msa0366050 AT5G24070.1 32.581 310 178 7 34 331 45 335 2.61e-45 157
Msa0366050 AT3G17070.2 36.576 257 152 4 85 331 21 276 4.93e-44 152
Msa0366050 AT5G39580.2 40.517 232 112 6 12 239 7 216 3.31e-41 144
Msa0366050 AT4G25980.2 39.683 189 97 4 18 206 63 234 3.52e-38 137
Msa0366050 AT2G24800.2 42.541 181 87 3 24 204 29 192 2.22e-34 126
Msa0366050 AT3G42570.1 41.237 97 56 1 111 206 53 149 2.46e-16 75.5
Msa0366050 AT4G32320.1 27.574 272 117 8 57 312 114 321 3.26e-15 75.9
Msa0366050 AT1G77490.1 26.538 260 159 8 60 313 106 339 5.44e-14 72.8
Msa0366050 AT1G77490.2 26.538 260 159 8 60 313 106 339 6.32e-14 72.4
Msa0366050 AT1G07890.6 28.634 227 122 7 95 317 59 249 9.18e-14 70.5
Msa0366050 AT1G07890.2 28.700 223 119 7 95 313 59 245 1.12e-13 70.1
Msa0366050 AT1G07890.8 28.700 223 119 7 95 313 59 245 1.12e-13 70.1
Msa0366050 AT1G07890.4 28.700 223 119 7 95 313 59 245 1.12e-13 70.1
Msa0366050 AT1G07890.7 28.700 223 119 7 95 313 59 245 1.12e-13 70.1
Msa0366050 AT1G07890.1 28.700 223 119 7 95 313 59 245 1.12e-13 70.1
Msa0366050 AT1G07890.3 28.700 223 119 7 95 313 59 245 1.12e-13 70.1
Msa0366050 AT1G07890.5 28.700 223 119 7 95 313 59 245 1.12e-13 70.1

Find 66 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCCGTTATTCCCGGTTAA+AGG 0.205012 3_1:-60486470 None:intergenic
TGCTAGTGCTATGGTGAAAA+TGG 0.207916 3_1:+60486436 Msa0366050:CDS
TTTATAATAGAAAGGGCTTT+AGG 0.216313 3_1:-60484573 None:intergenic
AAAGAGATGGTTGTCCTTTC+AGG 0.221896 3_1:+60485844 Msa0366050:CDS
CAATTATCTTCAGATTTCTA+TGG 0.243841 3_1:+60484540 Msa0366050:CDS
ACGAATCTGGCCGTTATTCC+CGG 0.335428 3_1:-60486477 None:intergenic
TTATAATAGAAAGGGCTTTA+GGG 0.351671 3_1:-60484572 None:intergenic
TGACAGCATTAAAACTCAAT+TGG 0.373054 3_1:+60485188 Msa0366050:CDS
GGAAATCTCAGCCCTTTAAC+CGG 0.392278 3_1:+60486458 Msa0366050:CDS
AGCTTGAAGTGTCGTCTAAC+AGG 0.393539 3_1:-60485107 None:intergenic
CAATTGACACCTGGCTTGTC+CGG 0.396982 3_1:-60486150 None:intergenic
TGCGGCAATTAGTACGAATC+TGG 0.400407 3_1:-60486490 None:intergenic
GGCCGTTATTCCCGGTTAAA+GGG 0.403393 3_1:-60486469 None:intergenic
TGAAAGGACAACCATCTCTT+TGG 0.409369 3_1:-60485842 None:intergenic
CCAACATGGAGTGTTGGATT+AGG 0.409859 3_1:+60485709 Msa0366050:CDS
AGATGAAGGACTTGTGCTAT+AGG 0.433383 3_1:-60486399 None:intergenic
CAACGATTTAGTTAACTTTG+CGG 0.433402 3_1:-60486508 None:intergenic
TTGCTATCACCACCTGTACT+TGG 0.442974 3_1:-60486242 None:intergenic
CTGCAGTGTTTATAATAGAA+AGG 0.449549 3_1:-60484581 None:intergenic
GTGCATTGACAAAGCAATCA+TGG 0.468415 3_1:-60484662 None:intergenic
TGCATAGGTGCTCATACAAC+CGG 0.472398 3_1:+60486131 Msa0366050:intron
TGCAGTGTTTATAATAGAAA+GGG 0.475406 3_1:-60484580 None:intergenic
TGATTGTCTCGTTATAAATC+CGG 0.475695 3_1:-60486181 None:intergenic
TGCACCAGCCGACTTCTCTC+CGG 0.477310 3_1:-60485133 None:intergenic
CAAAGCAATCATGGAAATGA+AGG 0.492608 3_1:-60484653 None:intergenic
GCTAGTGCTATGGTGAAAAT+GGG 0.496755 3_1:+60486437 Msa0366050:CDS
GGCAGTATCTTTACTAGCAG+TGG 0.501994 3_1:-60485746 None:intergenic
GCAAATGTGAATTCTCTAAG+AGG 0.504906 3_1:+60485153 Msa0366050:CDS
CAATTGGAAACTGCTTGTCC+TGG 0.510442 3_1:+60485204 Msa0366050:CDS
AGCCCTTTAACCGGGAATAA+CGG 0.513014 3_1:+60486467 Msa0366050:CDS
TGATATTCCATCCCCTCTGA+TGG 0.515674 3_1:+60485774 Msa0366050:CDS
GACGACACTTCAAGCTTCAC+CGG 0.519175 3_1:+60485114 Msa0366050:CDS
CTCAGTTGGGTGGTCCAACA+TGG 0.519896 3_1:+60485695 Msa0366050:intron
AAATCAAACTGTCCAAGTAC+AGG 0.528486 3_1:+60486230 Msa0366050:CDS
GGTGTCAATTGTTCAGAGGC+CGG 0.528795 3_1:+60486162 Msa0366050:CDS
AGCTGCAACAATATCAGCAC+AGG 0.534604 3_1:-60485235 None:intergenic
CTAAGATCCATCAGAGGGGA+TGG 0.537899 3_1:-60485781 None:intergenic
CTCATACAACCGGACAAGCC+AGG 0.537911 3_1:+60486141 Msa0366050:CDS
AGGGGATGGAATATCATTAG+TGG 0.539953 3_1:-60485767 None:intergenic
AATTTACTATCTCAGTTGGG+TGG 0.542773 3_1:+60485685 Msa0366050:intron
GAAATATGAGGTTACCTGAA+AGG 0.547360 3_1:-60485858 None:intergenic
AGCATTGTCAAATAATACAT+TGG 0.550023 3_1:-60486288 None:intergenic
GGTGGTCCAACATGGAGTGT+TGG 0.550979 3_1:+60485703 Msa0366050:CDS
AAGGACAACCATCTCTTTGG+TGG 0.552824 3_1:-60485839 None:intergenic
AAATCTGTATAGAAAGATGA+AGG 0.552892 3_1:-60486413 None:intergenic
GCCTCTGAACAATTGACACC+TGG 0.564734 3_1:-60486159 None:intergenic
GGGATTTACCACCAAAGAGA+TGG 0.567283 3_1:+60485831 Msa0366050:CDS
AAGCTTCACCGGAGAGAAGT+CGG 0.573162 3_1:+60485125 Msa0366050:CDS
GAAATCTCAGCCCTTTAACC+GGG 0.574005 3_1:+60486459 Msa0366050:CDS
TTCACCGGAGAGAAGTCGGC+TGG 0.575709 3_1:+60485129 Msa0366050:CDS
TCAGCACAGGAAACAACTCC+AGG 0.582131 3_1:-60485222 None:intergenic
AGATAATTGAGCAGAGACCA+TGG 0.600081 3_1:-60484526 None:intergenic
CCTAATCCAACACTCCATGT+TGG 0.600465 3_1:-60485709 None:intergenic
GATCAACAACTCTTCAGTGG+TGG 0.610710 3_1:+60486353 Msa0366050:CDS
TGTTTCGAAAGAACATCGCA+TGG 0.612909 3_1:+60484614 Msa0366050:CDS
TTGTGACATCAAGTGAGGTA+AGG 0.618359 3_1:-60486265 None:intergenic
GTTTCGAAAGAACATCGCAT+GGG 0.631111 3_1:+60484615 Msa0366050:CDS
GGTCACTAAGATCCATCAGA+GGG 0.631827 3_1:-60485786 None:intergenic
GCCAGGTGTCAATTGTTCAG+AGG 0.643723 3_1:+60486158 Msa0366050:CDS
TCTGATCAACAACTCTTCAG+TGG 0.652175 3_1:+60486350 Msa0366050:CDS
TCAAACTGTCCAAGTACAGG+TGG 0.661430 3_1:+60486233 Msa0366050:CDS
AGGTCACTAAGATCCATCAG+AGG 0.668121 3_1:-60485787 None:intergenic
ATTGGTTGTGACATCAAGTG+AGG 0.672598 3_1:-60486270 None:intergenic
AGCAATCATGGAAATGAAGG+CGG 0.675421 3_1:-60484650 None:intergenic
TGGACAGTTTGATTTCACTG+AGG 0.727605 3_1:-60486222 None:intergenic
GTCACTAAGATCCATCAGAG+GGG 0.764210 3_1:-60485785 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGTTATATTTTTTTTTTG+AGG + chr3_1:60484977-60484996 Msa0366050:intron 10.0%
!!! TTGTTATATTTTTTTTTTGA+GGG + chr3_1:60484978-60484997 Msa0366050:intron 10.0%
!!! ATAGAATTTTTTTTGTTAAT+AGG + chr3_1:60485427-60485446 Msa0366050:intron 10.0%
!!! TTTAAAATTTAACAAATATG+TGG - chr3_1:60485483-60485502 None:intergenic 10.0%
!! TTAATTAATTAAGAAATATG+AGG - chr3_1:60485873-60485892 None:intergenic 10.0%
!!! ATTGTTATATTTTTTTTTTG+AGG + chr3_1:60484977-60484996 Msa0366050:intron 10.0%
!!! TTGTTATATTTTTTTTTTGA+GGG + chr3_1:60484978-60484997 Msa0366050:intron 10.0%
!!! ATAGAATTTTTTTTGTTAAT+AGG + chr3_1:60485427-60485446 Msa0366050:intron 10.0%
!!! TTTAAAATTTAACAAATATG+TGG - chr3_1:60485483-60485502 None:intergenic 10.0%
!! TTAATTAATTAAGAAATATG+AGG - chr3_1:60485873-60485892 None:intergenic 10.0%
!! ACATTAAGTCTTTATAAATA+AGG + chr3_1:60485325-60485344 Msa0366050:intron 15.0%
!! ATTATTCACTATACTAAAAT+AGG + chr3_1:60485543-60485562 Msa0366050:intron 15.0%
!! TAATCATATATAAAACCTTA+AGG - chr3_1:60485630-60485649 None:intergenic 15.0%
!! AAAAACTTGATCTTAATTAT+GGG - chr3_1:60485901-60485920 None:intergenic 15.0%
!! TAAAAACTTGATCTTAATTA+TGG - chr3_1:60485902-60485921 None:intergenic 15.0%
!!! AAGATCAAGTTTTTAATTTA+AGG + chr3_1:60485907-60485926 Msa0366050:intron 15.0%
!! ACATTAAGTCTTTATAAATA+AGG + chr3_1:60485325-60485344 Msa0366050:intron 15.0%
!! ATTATTCACTATACTAAAAT+AGG + chr3_1:60485543-60485562 Msa0366050:intron 15.0%
!! TAATCATATATAAAACCTTA+AGG - chr3_1:60485630-60485649 None:intergenic 15.0%
!! AAAAACTTGATCTTAATTAT+GGG - chr3_1:60485901-60485920 None:intergenic 15.0%
!! TAAAAACTTGATCTTAATTA+TGG - chr3_1:60485902-60485921 None:intergenic 15.0%
!!! AAGATCAAGTTTTTAATTTA+AGG + chr3_1:60485907-60485926 Msa0366050:intron 15.0%
!! ACAACATAAAGAAGAAAAAT+AGG - chr3_1:60484494-60484513 None:intergenic 20.0%
!!! TTTTTCTCTTTTAAAGAGTT+TGG + chr3_1:60485289-60485308 Msa0366050:intron 20.0%
!! CTTTATAAATAAGGAATTAC+AGG + chr3_1:60485334-60485353 Msa0366050:intron 20.0%
!!! ATATCTGCTTTTTCAAATAA+GGG + chr3_1:60485811-60485830 Msa0366050:CDS 20.0%
!! AAAACTTGATCTTAATTATG+GGG - chr3_1:60485900-60485919 None:intergenic 20.0%
!!! CATTTTTTGTTTTGAAAACT+TGG + chr3_1:60486107-60486126 Msa0366050:intron 20.0%
!! AAGAATCTAGTAAACAAAAA+AGG + chr3_1:60486317-60486336 Msa0366050:CDS 20.0%
!! ACAACATAAAGAAGAAAAAT+AGG - chr3_1:60484494-60484513 None:intergenic 20.0%
!!! TTTTTCTCTTTTAAAGAGTT+TGG + chr3_1:60485289-60485308 Msa0366050:intron 20.0%
!! CTTTATAAATAAGGAATTAC+AGG + chr3_1:60485334-60485353 Msa0366050:intron 20.0%
!!! ATATCTGCTTTTTCAAATAA+GGG + chr3_1:60485811-60485830 Msa0366050:CDS 20.0%
!! AAAACTTGATCTTAATTATG+GGG - chr3_1:60485900-60485919 None:intergenic 20.0%
!!! CATTTTTTGTTTTGAAAACT+TGG + chr3_1:60486107-60486126 Msa0366050:intron 20.0%
!! AAGAATCTAGTAAACAAAAA+AGG + chr3_1:60486317-60486336 Msa0366050:CDS 20.0%
! CAATTATCTTCAGATTTCTA+TGG + chr3_1:60484540-60484559 Msa0366050:CDS 25.0%
! TTATAATAGAAAGGGCTTTA+GGG - chr3_1:60484575-60484594 None:intergenic 25.0%
! TTTATAATAGAAAGGGCTTT+AGG - chr3_1:60484576-60484595 None:intergenic 25.0%
! TGCAGTGTTTATAATAGAAA+GGG - chr3_1:60484583-60484602 None:intergenic 25.0%
!! TGATCATAATTGTAATTTGC+AGG + chr3_1:60484863-60484882 Msa0366050:intron 25.0%
!! CGTAGCAAACTTTTATATTA+CGG + chr3_1:60484894-60484913 Msa0366050:intron 25.0%
! GTCAAAAAATTCAAACCTTA+AGG + chr3_1:60485612-60485631 Msa0366050:intron 25.0%
! CACAAAATGTTAGTTAAAGT+TGG - chr3_1:60485660-60485679 None:intergenic 25.0%
! TTCAATTTACTATCTCAGTT+GGG + chr3_1:60485682-60485701 Msa0366050:intron 25.0%
! TATTTGAAAAAGCAGATATG+AGG - chr3_1:60485810-60485829 None:intergenic 25.0%
!!! CATATCTGCTTTTTCAAATA+AGG + chr3_1:60485810-60485829 Msa0366050:CDS 25.0%
! AGCATTGTCAAATAATACAT+TGG - chr3_1:60486291-60486310 None:intergenic 25.0%
! AAATCTGTATAGAAAGATGA+AGG - chr3_1:60486416-60486435 None:intergenic 25.0%
! CAATTATCTTCAGATTTCTA+TGG + chr3_1:60484540-60484559 Msa0366050:CDS 25.0%
! TTATAATAGAAAGGGCTTTA+GGG - chr3_1:60484575-60484594 None:intergenic 25.0%
! TTTATAATAGAAAGGGCTTT+AGG - chr3_1:60484576-60484595 None:intergenic 25.0%
! TGCAGTGTTTATAATAGAAA+GGG - chr3_1:60484583-60484602 None:intergenic 25.0%
!! TGATCATAATTGTAATTTGC+AGG + chr3_1:60484863-60484882 Msa0366050:intron 25.0%
!! CGTAGCAAACTTTTATATTA+CGG + chr3_1:60484894-60484913 Msa0366050:intron 25.0%
! GTCAAAAAATTCAAACCTTA+AGG + chr3_1:60485612-60485631 Msa0366050:intron 25.0%
! CACAAAATGTTAGTTAAAGT+TGG - chr3_1:60485660-60485679 None:intergenic 25.0%
! TTCAATTTACTATCTCAGTT+GGG + chr3_1:60485682-60485701 Msa0366050:intron 25.0%
! TATTTGAAAAAGCAGATATG+AGG - chr3_1:60485810-60485829 None:intergenic 25.0%
!!! CATATCTGCTTTTTCAAATA+AGG + chr3_1:60485810-60485829 Msa0366050:CDS 25.0%
! AGCATTGTCAAATAATACAT+TGG - chr3_1:60486291-60486310 None:intergenic 25.0%
! AAATCTGTATAGAAAGATGA+AGG - chr3_1:60486416-60486435 None:intergenic 25.0%
CTGCAGTGTTTATAATAGAA+AGG - chr3_1:60484584-60484603 None:intergenic 30.0%
AAGTGCATGCATTATTCATA+TGG + chr3_1:60484727-60484746 Msa0366050:intron 30.0%
!! ATGACGATTTTATAACTTGC+AGG + chr3_1:60485068-60485087 Msa0366050:intron 30.0%
!! TGACGATTTTATAACTTGCA+GGG + chr3_1:60485069-60485088 Msa0366050:intron 30.0%
TGACAGCATTAAAACTCAAT+TGG + chr3_1:60485188-60485207 Msa0366050:CDS 30.0%
GTTCAATTTACTATCTCAGT+TGG + chr3_1:60485681-60485700 Msa0366050:intron 30.0%
TTGCAAAAGTAGTTACATTG+CGG + chr3_1:60486004-60486023 Msa0366050:intron 30.0%
!! TTTTGAAAACTTGGATGCAT+AGG + chr3_1:60486116-60486135 Msa0366050:intron 30.0%
TGATTGTCTCGTTATAAATC+CGG - chr3_1:60486184-60486203 None:intergenic 30.0%
CTGCAGTGTTTATAATAGAA+AGG - chr3_1:60484584-60484603 None:intergenic 30.0%
AAGTGCATGCATTATTCATA+TGG + chr3_1:60484727-60484746 Msa0366050:intron 30.0%
!! ATGACGATTTTATAACTTGC+AGG + chr3_1:60485068-60485087 Msa0366050:intron 30.0%
!! TGACGATTTTATAACTTGCA+GGG + chr3_1:60485069-60485088 Msa0366050:intron 30.0%
TGACAGCATTAAAACTCAAT+TGG + chr3_1:60485188-60485207 Msa0366050:CDS 30.0%
GTTCAATTTACTATCTCAGT+TGG + chr3_1:60485681-60485700 Msa0366050:intron 30.0%
TTGCAAAAGTAGTTACATTG+CGG + chr3_1:60486004-60486023 Msa0366050:intron 30.0%
!! TTTTGAAAACTTGGATGCAT+AGG + chr3_1:60486116-60486135 Msa0366050:intron 30.0%
TGATTGTCTCGTTATAAATC+CGG - chr3_1:60486184-60486203 None:intergenic 30.0%
CAAAGCAATCATGGAAATGA+AGG - chr3_1:60484656-60484675 None:intergenic 35.0%
GCAAATGTGAATTCTCTAAG+AGG + chr3_1:60485153-60485172 Msa0366050:CDS 35.0%
ATGTTTCCATAAGTACGACT+CGG - chr3_1:60485409-60485428 None:intergenic 35.0%
ATACCTGTAAATAGCACTCT+AGG + chr3_1:60485570-60485589 Msa0366050:intron 35.0%
AATTTACTATCTCAGTTGGG+TGG + chr3_1:60485685-60485704 Msa0366050:intron 35.0%
GAAATATGAGGTTACCTGAA+AGG - chr3_1:60485861-60485880 None:intergenic 35.0%
CAGAGAATTGCAATCAAATG+TGG + chr3_1:60485964-60485983 Msa0366050:intron 35.0%
TGTACAAAGACTGCAATTCA+AGG - chr3_1:60486061-60486080 None:intergenic 35.0%
AAATCAAACTGTCCAAGTAC+AGG + chr3_1:60486230-60486249 Msa0366050:CDS 35.0%
! TACAGATTTTGCTAGTGCTA+TGG + chr3_1:60486427-60486446 Msa0366050:CDS 35.0%
CAAAGCAATCATGGAAATGA+AGG - chr3_1:60484656-60484675 None:intergenic 35.0%
GCAAATGTGAATTCTCTAAG+AGG + chr3_1:60485153-60485172 Msa0366050:CDS 35.0%
ATGTTTCCATAAGTACGACT+CGG - chr3_1:60485409-60485428 None:intergenic 35.0%
ATACCTGTAAATAGCACTCT+AGG + chr3_1:60485570-60485589 Msa0366050:intron 35.0%
AATTTACTATCTCAGTTGGG+TGG + chr3_1:60485685-60485704 Msa0366050:intron 35.0%
GAAATATGAGGTTACCTGAA+AGG - chr3_1:60485861-60485880 None:intergenic 35.0%
CAGAGAATTGCAATCAAATG+TGG + chr3_1:60485964-60485983 Msa0366050:intron 35.0%
TGTACAAAGACTGCAATTCA+AGG - chr3_1:60486061-60486080 None:intergenic 35.0%
AAATCAAACTGTCCAAGTAC+AGG + chr3_1:60486230-60486249 Msa0366050:CDS 35.0%
! TACAGATTTTGCTAGTGCTA+TGG + chr3_1:60486427-60486446 Msa0366050:CDS 35.0%
!! GTTGTTTTCGTTCTTGTCCA+TGG + chr3_1:60484509-60484528 Msa0366050:CDS 40.0%
AGATAATTGAGCAGAGACCA+TGG - chr3_1:60484529-60484548 None:intergenic 40.0%
TGTTTCGAAAGAACATCGCA+TGG + chr3_1:60484614-60484633 Msa0366050:CDS 40.0%
GTTTCGAAAGAACATCGCAT+GGG + chr3_1:60484615-60484634 Msa0366050:CDS 40.0%
AGCAATCATGGAAATGAAGG+CGG - chr3_1:60484653-60484672 None:intergenic 40.0%
! GTGCATTGACAAAGCAATCA+TGG - chr3_1:60484665-60484684 None:intergenic 40.0%
CGGTAAAATGCAGACAAATG+CGG + chr3_1:60484914-60484933 Msa0366050:intron 40.0%
TTGCAGTACAGCTACAATTG+TGG - chr3_1:60485025-60485044 None:intergenic 40.0%
AAGGAATTACAGGCTCAAAC+CGG + chr3_1:60485344-60485363 Msa0366050:intron 40.0%
CAAGGACATTTGATACGTTG+GGG - chr3_1:60485372-60485391 None:intergenic 40.0%
GCAAGGACATTTGATACGTT+GGG - chr3_1:60485373-60485392 None:intergenic 40.0%
TGCAAGGACATTTGATACGT+TGG - chr3_1:60485374-60485393 None:intergenic 40.0%
!! CAACCTAGAGTGCTATTTAC+AGG - chr3_1:60485576-60485595 None:intergenic 40.0%
AGGGGATGGAATATCATTAG+TGG - chr3_1:60485770-60485789 None:intergenic 40.0%
TGAAAGGACAACCATCTCTT+TGG - chr3_1:60485845-60485864 None:intergenic 40.0%
AAAGAGATGGTTGTCCTTTC+AGG + chr3_1:60485844-60485863 Msa0366050:CDS 40.0%
TTGCAATGCGACTACAATTG+AGG - chr3_1:60485990-60486009 None:intergenic 40.0%
! TGGACAGTTTGATTTCACTG+AGG - chr3_1:60486225-60486244 None:intergenic 40.0%
TTGTGACATCAAGTGAGGTA+AGG - chr3_1:60486268-60486287 None:intergenic 40.0%
ATTGGTTGTGACATCAAGTG+AGG - chr3_1:60486273-60486292 None:intergenic 40.0%
TCTGATCAACAACTCTTCAG+TGG + chr3_1:60486350-60486369 Msa0366050:CDS 40.0%
AGATGAAGGACTTGTGCTAT+AGG - chr3_1:60486402-60486421 None:intergenic 40.0%
TGCTAGTGCTATGGTGAAAA+TGG + chr3_1:60486436-60486455 Msa0366050:CDS 40.0%
GCTAGTGCTATGGTGAAAAT+GGG + chr3_1:60486437-60486456 Msa0366050:CDS 40.0%
!! GTTGTTTTCGTTCTTGTCCA+TGG + chr3_1:60484509-60484528 Msa0366050:CDS 40.0%
AGATAATTGAGCAGAGACCA+TGG - chr3_1:60484529-60484548 None:intergenic 40.0%
TGTTTCGAAAGAACATCGCA+TGG + chr3_1:60484614-60484633 Msa0366050:CDS 40.0%
GTTTCGAAAGAACATCGCAT+GGG + chr3_1:60484615-60484634 Msa0366050:CDS 40.0%
AGCAATCATGGAAATGAAGG+CGG - chr3_1:60484653-60484672 None:intergenic 40.0%
! GTGCATTGACAAAGCAATCA+TGG - chr3_1:60484665-60484684 None:intergenic 40.0%
CGGTAAAATGCAGACAAATG+CGG + chr3_1:60484914-60484933 Msa0366050:intron 40.0%
TTGCAGTACAGCTACAATTG+TGG - chr3_1:60485025-60485044 None:intergenic 40.0%
AAGGAATTACAGGCTCAAAC+CGG + chr3_1:60485344-60485363 Msa0366050:intron 40.0%
CAAGGACATTTGATACGTTG+GGG - chr3_1:60485372-60485391 None:intergenic 40.0%
GCAAGGACATTTGATACGTT+GGG - chr3_1:60485373-60485392 None:intergenic 40.0%
TGCAAGGACATTTGATACGT+TGG - chr3_1:60485374-60485393 None:intergenic 40.0%
!! CAACCTAGAGTGCTATTTAC+AGG - chr3_1:60485576-60485595 None:intergenic 40.0%
AGGGGATGGAATATCATTAG+TGG - chr3_1:60485770-60485789 None:intergenic 40.0%
TGAAAGGACAACCATCTCTT+TGG - chr3_1:60485845-60485864 None:intergenic 40.0%
AAAGAGATGGTTGTCCTTTC+AGG + chr3_1:60485844-60485863 Msa0366050:CDS 40.0%
TTGCAATGCGACTACAATTG+AGG - chr3_1:60485990-60486009 None:intergenic 40.0%
! TGGACAGTTTGATTTCACTG+AGG - chr3_1:60486225-60486244 None:intergenic 40.0%
TTGTGACATCAAGTGAGGTA+AGG - chr3_1:60486268-60486287 None:intergenic 40.0%
ATTGGTTGTGACATCAAGTG+AGG - chr3_1:60486273-60486292 None:intergenic 40.0%
TCTGATCAACAACTCTTCAG+TGG + chr3_1:60486350-60486369 Msa0366050:CDS 40.0%
AGATGAAGGACTTGTGCTAT+AGG - chr3_1:60486402-60486421 None:intergenic 40.0%
TGCTAGTGCTATGGTGAAAA+TGG + chr3_1:60486436-60486455 Msa0366050:CDS 40.0%
GCTAGTGCTATGGTGAAAAT+GGG + chr3_1:60486437-60486456 Msa0366050:CDS 40.0%
!! AGCTTGAAGTGTCGTCTAAC+AGG - chr3_1:60485110-60485129 None:intergenic 45.0%
CAATTGGAAACTGCTTGTCC+TGG + chr3_1:60485204-60485223 Msa0366050:CDS 45.0%
AGCTGCAACAATATCAGCAC+AGG - chr3_1:60485238-60485257 None:intergenic 45.0%
TCGGATGGCAATAGATTGCA+AGG - chr3_1:60485390-60485409 None:intergenic 45.0%
! TTCCATAAGTACGACTCGGA+TGG - chr3_1:60485405-60485424 None:intergenic 45.0%
CCTAATCCAACACTCCATGT+TGG - chr3_1:60485712-60485731 None:intergenic 45.0%
!! CCAACATGGAGTGTTGGATT+AGG + chr3_1:60485709-60485728 Msa0366050:CDS 45.0%
GGCAGTATCTTTACTAGCAG+TGG - chr3_1:60485749-60485768 None:intergenic 45.0%
TGATATTCCATCCCCTCTGA+TGG + chr3_1:60485774-60485793 Msa0366050:CDS 45.0%
GTCACTAAGATCCATCAGAG+GGG - chr3_1:60485788-60485807 None:intergenic 45.0%
GGTCACTAAGATCCATCAGA+GGG - chr3_1:60485789-60485808 None:intergenic 45.0%
AGGTCACTAAGATCCATCAG+AGG - chr3_1:60485790-60485809 None:intergenic 45.0%
GGGATTTACCACCAAAGAGA+TGG + chr3_1:60485831-60485850 Msa0366050:CDS 45.0%
AAGGACAACCATCTCTTTGG+TGG - chr3_1:60485842-60485861 None:intergenic 45.0%
TGCATAGGTGCTCATACAAC+CGG + chr3_1:60486131-60486150 Msa0366050:intron 45.0%
TCAAACTGTCCAAGTACAGG+TGG + chr3_1:60486233-60486252 Msa0366050:CDS 45.0%
TTGCTATCACCACCTGTACT+TGG - chr3_1:60486245-60486264 None:intergenic 45.0%
GATCAACAACTCTTCAGTGG+TGG + chr3_1:60486353-60486372 Msa0366050:CDS 45.0%
GGAAATCTCAGCCCTTTAAC+CGG + chr3_1:60486458-60486477 Msa0366050:CDS 45.0%
GAAATCTCAGCCCTTTAACC+GGG + chr3_1:60486459-60486478 Msa0366050:CDS 45.0%
AGCCCTTTAACCGGGAATAA+CGG + chr3_1:60486467-60486486 Msa0366050:CDS 45.0%
TGCGGCAATTAGTACGAATC+TGG - chr3_1:60486493-60486512 None:intergenic 45.0%
!! AGCTTGAAGTGTCGTCTAAC+AGG - chr3_1:60485110-60485129 None:intergenic 45.0%
CAATTGGAAACTGCTTGTCC+TGG + chr3_1:60485204-60485223 Msa0366050:CDS 45.0%
AGCTGCAACAATATCAGCAC+AGG - chr3_1:60485238-60485257 None:intergenic 45.0%
TCGGATGGCAATAGATTGCA+AGG - chr3_1:60485390-60485409 None:intergenic 45.0%
! TTCCATAAGTACGACTCGGA+TGG - chr3_1:60485405-60485424 None:intergenic 45.0%
CCTAATCCAACACTCCATGT+TGG - chr3_1:60485712-60485731 None:intergenic 45.0%
!! CCAACATGGAGTGTTGGATT+AGG + chr3_1:60485709-60485728 Msa0366050:CDS 45.0%
GGCAGTATCTTTACTAGCAG+TGG - chr3_1:60485749-60485768 None:intergenic 45.0%
TGATATTCCATCCCCTCTGA+TGG + chr3_1:60485774-60485793 Msa0366050:CDS 45.0%
GTCACTAAGATCCATCAGAG+GGG - chr3_1:60485788-60485807 None:intergenic 45.0%
GGTCACTAAGATCCATCAGA+GGG - chr3_1:60485789-60485808 None:intergenic 45.0%
AGGTCACTAAGATCCATCAG+AGG - chr3_1:60485790-60485809 None:intergenic 45.0%
GGGATTTACCACCAAAGAGA+TGG + chr3_1:60485831-60485850 Msa0366050:CDS 45.0%
AAGGACAACCATCTCTTTGG+TGG - chr3_1:60485842-60485861 None:intergenic 45.0%
TGCATAGGTGCTCATACAAC+CGG + chr3_1:60486131-60486150 Msa0366050:intron 45.0%
TCAAACTGTCCAAGTACAGG+TGG + chr3_1:60486233-60486252 Msa0366050:CDS 45.0%
TTGCTATCACCACCTGTACT+TGG - chr3_1:60486245-60486264 None:intergenic 45.0%
GATCAACAACTCTTCAGTGG+TGG + chr3_1:60486353-60486372 Msa0366050:CDS 45.0%
GGAAATCTCAGCCCTTTAAC+CGG + chr3_1:60486458-60486477 Msa0366050:CDS 45.0%
GAAATCTCAGCCCTTTAACC+GGG + chr3_1:60486459-60486478 Msa0366050:CDS 45.0%
AGCCCTTTAACCGGGAATAA+CGG + chr3_1:60486467-60486486 Msa0366050:CDS 45.0%
TGCGGCAATTAGTACGAATC+TGG - chr3_1:60486493-60486512 None:intergenic 45.0%
!! ATATATATATATATATATAG+TGG - chr3_1:60484810-60484829 None:intergenic 5.0%
!! ATATATATATATATATATAG+TGG - chr3_1:60484810-60484829 None:intergenic 5.0%
GACGACACTTCAAGCTTCAC+CGG + chr3_1:60485114-60485133 Msa0366050:CDS 50.0%
AAGCTTCACCGGAGAGAAGT+CGG + chr3_1:60485125-60485144 Msa0366050:CDS 50.0%
TCAGCACAGGAAACAACTCC+AGG - chr3_1:60485225-60485244 None:intergenic 50.0%
CATTTGATACGTTGGGGCAC+CGG - chr3_1:60485366-60485385 None:intergenic 50.0%
TGCCATCCGAGTCGTACTTA+TGG + chr3_1:60485400-60485419 Msa0366050:intron 50.0%
CTAAGATCCATCAGAGGGGA+TGG - chr3_1:60485784-60485803 None:intergenic 50.0%
AGTGTTCGTTTCGCGATCCT+TGG + chr3_1:60485937-60485956 Msa0366050:intron 50.0%
TTGCAATTCTCTGCGAGCCA+AGG - chr3_1:60485957-60485976 None:intergenic 50.0%
! CAATTGACACCTGGCTTGTC+CGG - chr3_1:60486153-60486172 None:intergenic 50.0%
GCCAGGTGTCAATTGTTCAG+AGG + chr3_1:60486158-60486177 Msa0366050:CDS 50.0%
GCCTCTGAACAATTGACACC+TGG - chr3_1:60486162-60486181 None:intergenic 50.0%
GGTGTCAATTGTTCAGAGGC+CGG + chr3_1:60486162-60486181 Msa0366050:CDS 50.0%
GGCCGTTATTCCCGGTTAAA+GGG - chr3_1:60486472-60486491 None:intergenic 50.0%
TGGCCGTTATTCCCGGTTAA+AGG - chr3_1:60486473-60486492 None:intergenic 50.0%
ACGAATCTGGCCGTTATTCC+CGG - chr3_1:60486480-60486499 None:intergenic 50.0%
GACGACACTTCAAGCTTCAC+CGG + chr3_1:60485114-60485133 Msa0366050:CDS 50.0%
AAGCTTCACCGGAGAGAAGT+CGG + chr3_1:60485125-60485144 Msa0366050:CDS 50.0%
TCAGCACAGGAAACAACTCC+AGG - chr3_1:60485225-60485244 None:intergenic 50.0%
CATTTGATACGTTGGGGCAC+CGG - chr3_1:60485366-60485385 None:intergenic 50.0%
TGCCATCCGAGTCGTACTTA+TGG + chr3_1:60485400-60485419 Msa0366050:intron 50.0%
CTAAGATCCATCAGAGGGGA+TGG - chr3_1:60485784-60485803 None:intergenic 50.0%
AGTGTTCGTTTCGCGATCCT+TGG + chr3_1:60485937-60485956 Msa0366050:intron 50.0%
TTGCAATTCTCTGCGAGCCA+AGG - chr3_1:60485957-60485976 None:intergenic 50.0%
! CAATTGACACCTGGCTTGTC+CGG - chr3_1:60486153-60486172 None:intergenic 50.0%
GCCAGGTGTCAATTGTTCAG+AGG + chr3_1:60486158-60486177 Msa0366050:CDS 50.0%
GCCTCTGAACAATTGACACC+TGG - chr3_1:60486162-60486181 None:intergenic 50.0%
GGTGTCAATTGTTCAGAGGC+CGG + chr3_1:60486162-60486181 Msa0366050:CDS 50.0%
GGCCGTTATTCCCGGTTAAA+GGG - chr3_1:60486472-60486491 None:intergenic 50.0%
TGGCCGTTATTCCCGGTTAA+AGG - chr3_1:60486473-60486492 None:intergenic 50.0%
ACGAATCTGGCCGTTATTCC+CGG - chr3_1:60486480-60486499 None:intergenic 50.0%
GACAAATGCGGCTGCAGTTG+CGG + chr3_1:60484926-60484945 Msa0366050:intron 55.0%
CTCAGTTGGGTGGTCCAACA+TGG + chr3_1:60485695-60485714 Msa0366050:intron 55.0%
GGTGGTCCAACATGGAGTGT+TGG + chr3_1:60485703-60485722 Msa0366050:CDS 55.0%
CTCATACAACCGGACAAGCC+AGG + chr3_1:60486141-60486160 Msa0366050:CDS 55.0%
GACAAATGCGGCTGCAGTTG+CGG + chr3_1:60484926-60484945 Msa0366050:intron 55.0%
CTCAGTTGGGTGGTCCAACA+TGG + chr3_1:60485695-60485714 Msa0366050:intron 55.0%
GGTGGTCCAACATGGAGTGT+TGG + chr3_1:60485703-60485722 Msa0366050:CDS 55.0%
CTCATACAACCGGACAAGCC+AGG + chr3_1:60486141-60486160 Msa0366050:CDS 55.0%
TTCACCGGAGAGAAGTCGGC+TGG + chr3_1:60485129-60485148 Msa0366050:CDS 60.0%
! TGCACCAGCCGACTTCTCTC+CGG - chr3_1:60485136-60485155 None:intergenic 60.0%
TTCACCGGAGAGAAGTCGGC+TGG + chr3_1:60485129-60485148 Msa0366050:CDS 60.0%
! TGCACCAGCCGACTTCTCTC+CGG - chr3_1:60485136-60485155 None:intergenic 60.0%
ATGCGGCTGCAGTTGCGGCT+AGG + chr3_1:60484931-60484950 Msa0366050:intron 65.0%
ATGCGGCTGCAGTTGCGGCT+AGG + chr3_1:60484931-60484950 Msa0366050:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 60484468 60486523 60484468 ID=Msa0366050;Name=Msa0366050
chr3_1 mRNA 60484468 60486523 60484468 ID=Msa0366050-mRNA-1;Parent=Msa0366050;Name=Msa0366050-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|4|0|331
chr3_1 exon 60484468 60484719 60484468 ID=Msa0366050-mRNA-1:exon:11662;Parent=Msa0366050-mRNA-1
chr3_1 exon 60485090 60485281 60485090 ID=Msa0366050-mRNA-1:exon:11663;Parent=Msa0366050-mRNA-1
chr3_1 exon 60485700 60485865 60485700 ID=Msa0366050-mRNA-1:exon:11664;Parent=Msa0366050-mRNA-1
chr3_1 exon 60486138 60486523 60486138 ID=Msa0366050-mRNA-1:exon:11665;Parent=Msa0366050-mRNA-1
chr3_1 CDS 60484468 60484719 60484468 ID=Msa0366050-mRNA-1:cds;Parent=Msa0366050-mRNA-1
chr3_1 CDS 60485090 60485281 60485090 ID=Msa0366050-mRNA-1:cds;Parent=Msa0366050-mRNA-1
chr3_1 CDS 60485700 60485865 60485700 ID=Msa0366050-mRNA-1:cds;Parent=Msa0366050-mRNA-1
chr3_1 CDS 60486138 60486523 60486138 ID=Msa0366050-mRNA-1:cds;Parent=Msa0366050-mRNA-1
Gene Sequence

>Msa0366050

ATGGCTTTCAACATGCATTATAACCTATTTTTCTTCTTTATGTTGTTTTCGTTCTTGTCCATGGTCTCTGCTCAATTATCTTCAGATTTCTATGGAACAACTTGCCCTAAAGCCCTTTCTATTATAAACACTGCAGTGTGCAGTGCTGTTTCGAAAGAACATCGCATGGGTGCTTCATTGCTCCGCCTTCATTTCCATGATTGCTTTGTCAATGCACGTTCTTTCTTCTCTCTAGCTAACATATTCATGCATGGATGTGATGCATCAGTCCTGTTAGACGACACTTCAAGCTTCACCGGAGAGAAGTCGGCTGGTGCAAATGTGAATTCTCTAAGAGGTTTTGACGTGATTGACAGCATTAAAACTCAATTGGAAACTGCTTGTCCTGGAGTTGTTTCCTGTGCTGATATTGTTGCAGCTGCTGCTCGTGATGCTGTTGTAGCATTGGGTGGTCCAACATGGAGTGTTGGATTAGGTAGAAGAGATTCAACCACTGCTAGTAAAGATACTGCCACTAATGATATTCCATCCCCTCTGATGGATCTTAGTGACCTCATATCTGCTTTTTCAAATAAGGGATTTACCACCAAAGAGATGGTTGTCCTTTCAGGTGCTCATACAACCGGACAAGCCAGGTGTCAATTGTTCAGAGGCCGGATTTATAACGAGACAATCATTGACTCAAATTTTGCAACCTCAGTGAAATCAAACTGTCCAAGTACAGGTGGTGATAGCAACCTTACCTCACTTGATGTCACAACCAATGTATTATTTGACAATGCTTATTTCAAGAATCTAGTAAACAAAAAAGGACTTTTACATTCTGATCAACAACTCTTCAGTGGTGGTTCTACTGATTCTCAAGTCACTACCTATAGCACAAGTCCTTCATCTTTCTATACAGATTTTGCTAGTGCTATGGTGAAAATGGGAAATCTCAGCCCTTTAACCGGGAATAACGGCCAGATTCGTACTAATTGCCGCAAAGTTAACTAA
Protein sequence

>Msa0366050

MAFNMHYNLFFFFMLFSFLSMVSAQLSSDFYGTTCPKALSIINTAVCSAVSKEHRMGASLLRLHFHDCFVNARSFFSLANIFMHGCDASVLLDDTSSFTGEKSAGANVNSLRGFDVIDSIKTQLETACPGVVSCADIVAAAARDAVVALGGPTWSVGLGRRDSTTASKDTATNDIPSPLMDLSDLISAFSNKGFTTKEMVVLSGAHTTGQARCQLFRGRIYNETIIDSNFATSVKSNCPSTGGDSNLTSLDVTTNVLFDNAYFKNLVNKKGLLHSDQQLFSGGSTDSQVTTYSTSPSSFYTDFASAMVKMGNLSPLTGNNGQIRTNCRKVN*