AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0039890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0039890 MtrunA17_Chr1g0204471 95.420 262 10 1 1 260 1 262 7.09e-177 487
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0039890 AT5G51680.1 30.294 340 148 9 4 260 10 343 6.02e-23 96.3

Find 57 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCTTCAATTCCTTTCATT+TGG 0.224391 1_1:-69880806 Msa0039890:CDS
AAGAAAGGAAGAAACATATT+AGG 0.233439 1_1:-69880833 Msa0039890:CDS
TTGCCTCAATTCCCTTTGTT+TGG 0.279099 1_1:-69880698 Msa0039890:CDS
TGAAAAGTTAAGTTCAAGTT+TGG 0.340393 1_1:-69880340 Msa0039890:CDS
ACTGGAAGGTCAAGTTTAAC+TGG 0.341492 1_1:-69880438 Msa0039890:CDS
ACCTTCAATTCCTTTCATTT+GGG 0.345813 1_1:-69880805 Msa0039890:CDS
TATCAAAACTAAATGATTCT+AGG 0.360427 1_1:+69880604 None:intergenic
ACCACGAGAAAGCAAGCTTT+TGG 0.370273 1_1:-69879871 Msa0039890:CDS
TGCCTCAATTCCCTTTGTTT+GGG 0.372035 1_1:-69880697 Msa0039890:CDS
CCTTTGTTTCCACCAAAGTC+TGG 0.375252 1_1:-69880390 Msa0039890:CDS
AAGCAACTCAAATGAACAAA+TGG 0.378323 1_1:-69880203 Msa0039890:CDS
TTCAAGTTTGGTGGAACTAA+AGG 0.388380 1_1:-69880328 Msa0039890:CDS
AACTGAGTTAAATGATTCAT+TGG 0.396407 1_1:+69880581 None:intergenic
AGTATAAGCAGCTATGAAAC+TGG 0.406907 1_1:-69880456 Msa0039890:CDS
AAACTAGGGAGGGGTATTCC+AGG 0.409764 1_1:+69880666 None:intergenic
TTCTAGGTCCAAGCTAGTTA+TGG 0.418005 1_1:+69880620 None:intergenic
AGAAAGGAAGAAACATATTA+GGG 0.423493 1_1:-69880832 Msa0039890:CDS
ATGGAACAAGTTACCTTTGG+TGG 0.430078 1_1:+69880177 None:intergenic
TCAAGTTTGGTGGAACTAAA+GGG 0.439502 1_1:-69880327 Msa0039890:CDS
CAGGCATTCCTATAAAAGAT+TGG 0.447195 1_1:-69880773 Msa0039890:CDS
AAAGTTAAGTTCAAGTTTGG+TGG 0.448826 1_1:-69880337 Msa0039890:CDS
CTCTCCAGCTTCGTCGGAGA+TGG 0.451790 1_1:-69880484 Msa0039890:CDS
CTTTCAAGAAAACCAGACTT+TGG 0.465296 1_1:+69880378 None:intergenic
TTCCCAAACAAAGGGAATTG+AGG 0.478406 1_1:+69880695 None:intergenic
CTTTAGACTAGTTTCAGCCT+AGG 0.480571 1_1:+69879787 None:intergenic
AGAGAGTTTGCAAGTAAAGA+AGG 0.480592 1_1:+69880558 None:intergenic
CTATCCATCTCCGACGAAGC+TGG 0.483008 1_1:+69880480 None:intergenic
TTTAGACTAGTTTCAGCCTA+GGG 0.498911 1_1:+69879788 None:intergenic
TCCCAAATGAAAGGAATTGA+AGG 0.504204 1_1:+69880804 None:intergenic
AGCAACTCAAATGAACAAAT+GGG 0.509084 1_1:-69880202 Msa0039890:CDS
TCATCAACATGTGAGAAACT+AGG 0.514045 1_1:+69880651 None:intergenic
TCAAGAAAACCAGACTTTGG+TGG 0.518874 1_1:+69880381 None:intergenic
ACAAGCAGCAGTATCATTGA+AGG 0.522761 1_1:-69879832 Msa0039890:CDS
TCCGACGAAGCTGGAGAGGA+TGG 0.522845 1_1:+69880489 None:intergenic
ATAATTAACTCTCCAAGTGT+TGG 0.527351 1_1:+69880255 None:intergenic
GAGGATGGAGTTTGCTGTAG+TGG 0.531543 1_1:+69880504 None:intergenic
TCCATCCTCTCCAGCTTCGT+CGG 0.537624 1_1:-69880490 Msa0039890:CDS
TTCATTTGGGAAACAAAACC+AGG 0.538522 1_1:-69880792 Msa0039890:CDS
TCAAGGAAGCAACCAACACT+TGG 0.542435 1_1:-69880267 Msa0039890:CDS
TTGCTTCCTTGACATATCAC+AGG 0.543111 1_1:+69880278 None:intergenic
CCAGACTTTGGTGGAAACAA+AGG 0.545773 1_1:+69880390 None:intergenic
TCCAAAAGCTTGCTTTCTCG+TGG 0.546204 1_1:+69879870 None:intergenic
CATCAACATGTGAGAAACTA+GGG 0.549198 1_1:+69880652 None:intergenic
ATTATACCTGTGATATGTCA+AGG 0.573360 1_1:-69880284 Msa0039890:CDS
GAGTGAAACCATAACTAGCT+TGG 0.574998 1_1:-69880628 Msa0039890:CDS
TGACAAAATGATGAGTCCAC+TGG 0.586915 1_1:+69880747 None:intergenic
TGAAGAGAAAGTACTACCCT+AGG 0.596271 1_1:-69879804 Msa0039890:CDS
CATCTCCGACGAAGCTGGAG+AGG 0.596381 1_1:+69880485 None:intergenic
TGGAGTTTGCTGTAGTGGCA+TGG 0.598354 1_1:+69880509 None:intergenic
CAAATGAAAGGAATTGAAGG+TGG 0.607064 1_1:+69880807 None:intergenic
GAACAAATGGGATCCACCAA+AGG 0.609336 1_1:-69880190 Msa0039890:intron
ACATGTGAGAAACTAGGGAG+GGG 0.616121 1_1:+69880657 None:intergenic
TAAGCAGCTATGAAACTGGA+AGG 0.618972 1_1:-69880452 Msa0039890:CDS
TATAAAAGATTGGAAGCCAG+TGG 0.619766 1_1:-69880763 Msa0039890:CDS
AACATGTGAGAAACTAGGGA+GGG 0.639709 1_1:+69880656 None:intergenic
CAAGCAGCAGTATCATTGAA+GGG 0.643098 1_1:-69879831 Msa0039890:CDS
CAACATGTGAGAAACTAGGG+AGG 0.699559 1_1:+69880655 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATCAAAACTAAATGATTCT+AGG + chr1_1:69880031-69880050 None:intergenic 20.0%
!! AACGTTTATTGACATAAAAA+TGG + chr1_1:69880477-69880496 None:intergenic 20.0%
!! ATTCAAATTAGCATCTAAAT+TGG - chr1_1:69880636-69880655 Msa0039890:CDS 20.0%
!!! AATTGGTTACTTTTTAAGTA+TGG - chr1_1:69880653-69880672 Msa0039890:CDS 20.0%
!! TATCAAAACTAAATGATTCT+AGG + chr1_1:69880031-69880050 None:intergenic 20.0%
!! AACGTTTATTGACATAAAAA+TGG + chr1_1:69880477-69880496 None:intergenic 20.0%
!! ATTCAAATTAGCATCTAAAT+TGG - chr1_1:69880636-69880655 Msa0039890:CDS 20.0%
!!! AATTGGTTACTTTTTAAGTA+TGG - chr1_1:69880653-69880672 Msa0039890:CDS 20.0%
! AAGAAAGGAAGAAACATATT+AGG - chr1_1:69879799-69879818 Msa0039890:CDS 25.0%
! AGAAAGGAAGAAACATATTA+GGG - chr1_1:69879800-69879819 Msa0039890:CDS 25.0%
!!! ATTTGTTTTAGTGGAGTTTT+TGG + chr1_1:69879915-69879934 None:intergenic 25.0%
! AACTGAGTTAAATGATTCAT+TGG + chr1_1:69880054-69880073 None:intergenic 25.0%
!! TGAAAAGTTAAGTTCAAGTT+TGG - chr1_1:69880292-69880311 Msa0039890:CDS 25.0%
! TATGTCAATAAACGTTTCTT+TGG - chr1_1:69880481-69880500 Msa0039890:CDS 25.0%
! CTAAAACGTTGAATTAAGAT+CGG - chr1_1:69880535-69880554 Msa0039890:CDS 25.0%
! ATAATCTCATCGAGAAAAAT+TGG + chr1_1:69880618-69880637 None:intergenic 25.0%
! AAGAAAGGAAGAAACATATT+AGG - chr1_1:69879799-69879818 Msa0039890:CDS 25.0%
! AGAAAGGAAGAAACATATTA+GGG - chr1_1:69879800-69879819 Msa0039890:CDS 25.0%
!!! ATTTGTTTTAGTGGAGTTTT+TGG + chr1_1:69879915-69879934 None:intergenic 25.0%
! AACTGAGTTAAATGATTCAT+TGG + chr1_1:69880054-69880073 None:intergenic 25.0%
!! TGAAAAGTTAAGTTCAAGTT+TGG - chr1_1:69880292-69880311 Msa0039890:CDS 25.0%
! TATGTCAATAAACGTTTCTT+TGG - chr1_1:69880481-69880500 Msa0039890:CDS 25.0%
! CTAAAACGTTGAATTAAGAT+CGG - chr1_1:69880535-69880554 Msa0039890:CDS 25.0%
! ATAATCTCATCGAGAAAAAT+TGG + chr1_1:69880618-69880637 None:intergenic 25.0%
ACCTTCAATTCCTTTCATTT+GGG - chr1_1:69879827-69879846 Msa0039890:CDS 30.0%
!!! ATTGAGGCAATTTGTTTTAG+TGG + chr1_1:69879924-69879943 None:intergenic 30.0%
!!! TTTAACTGGTTCTGCTTTTT+TGG - chr1_1:69880208-69880227 Msa0039890:CDS 30.0%
!!! AAAGTCTGGTTTTCTTGAAA+GGG - chr1_1:69880256-69880275 Msa0039890:CDS 30.0%
! AAAGTTAAGTTCAAGTTTGG+TGG - chr1_1:69880295-69880314 Msa0039890:CDS 30.0%
ATTATACCTGTGATATGTCA+AGG - chr1_1:69880348-69880367 Msa0039890:CDS 30.0%
ATAATTAACTCTCCAAGTGT+TGG + chr1_1:69880380-69880399 None:intergenic 30.0%
AAGCAACTCAAATGAACAAA+TGG - chr1_1:69880429-69880448 Msa0039890:CDS 30.0%
AGCAACTCAAATGAACAAAT+GGG - chr1_1:69880430-69880449 Msa0039890:CDS 30.0%
AAAATGGAACAAGTTACCTT+TGG + chr1_1:69880461-69880480 None:intergenic 30.0%
! GACTTTGTATTTGGAATACT+TGG + chr1_1:69880585-69880604 None:intergenic 30.0%
ACCTTCAATTCCTTTCATTT+GGG - chr1_1:69879827-69879846 Msa0039890:CDS 30.0%
!!! ATTGAGGCAATTTGTTTTAG+TGG + chr1_1:69879924-69879943 None:intergenic 30.0%
!!! TTTAACTGGTTCTGCTTTTT+TGG - chr1_1:69880208-69880227 Msa0039890:CDS 30.0%
!!! AAAGTCTGGTTTTCTTGAAA+GGG - chr1_1:69880256-69880275 Msa0039890:CDS 30.0%
! AAAGTTAAGTTCAAGTTTGG+TGG - chr1_1:69880295-69880314 Msa0039890:CDS 30.0%
ATTATACCTGTGATATGTCA+AGG - chr1_1:69880348-69880367 Msa0039890:CDS 30.0%
ATAATTAACTCTCCAAGTGT+TGG + chr1_1:69880380-69880399 None:intergenic 30.0%
AAGCAACTCAAATGAACAAA+TGG - chr1_1:69880429-69880448 Msa0039890:CDS 30.0%
AGCAACTCAAATGAACAAAT+GGG - chr1_1:69880430-69880449 Msa0039890:CDS 30.0%
AAAATGGAACAAGTTACCTT+TGG + chr1_1:69880461-69880480 None:intergenic 30.0%
! GACTTTGTATTTGGAATACT+TGG + chr1_1:69880585-69880604 None:intergenic 30.0%
CAAATGAAAGGAATTGAAGG+TGG + chr1_1:69879828-69879847 None:intergenic 35.0%
CACCTTCAATTCCTTTCATT+TGG - chr1_1:69879826-69879845 Msa0039890:CDS 35.0%
TCCCAAATGAAAGGAATTGA+AGG + chr1_1:69879831-69879850 None:intergenic 35.0%
!!! GGTTTTGTTTCCCAAATGAA+AGG + chr1_1:69879840-69879859 None:intergenic 35.0%
TTCATTTGGGAAACAAAACC+AGG - chr1_1:69879840-69879859 Msa0039890:CDS 35.0%
! CAATCTTTTATAGGAATGCC+TGG + chr1_1:69879861-69879880 None:intergenic 35.0%
CAGGCATTCCTATAAAAGAT+TGG - chr1_1:69879859-69879878 Msa0039890:CDS 35.0%
!! ACTGGCTTCCAATCTTTTAT+AGG + chr1_1:69879870-69879889 None:intergenic 35.0%
TATAAAAGATTGGAAGCCAG+TGG - chr1_1:69879869-69879888 Msa0039890:CDS 35.0%
! GGTTTTTCTTCCCAAACAAA+GGG + chr1_1:69879948-69879967 None:intergenic 35.0%
! AGGTTTTTCTTCCCAAACAA+AGG + chr1_1:69879949-69879968 None:intergenic 35.0%
TTTGTTTGGGAAGAAAAACC+TGG - chr1_1:69879948-69879967 Msa0039890:intron 35.0%
CATCAACATGTGAGAAACTA+GGG + chr1_1:69879983-69880002 None:intergenic 35.0%
TCATCAACATGTGAGAAACT+AGG + chr1_1:69879984-69880003 None:intergenic 35.0%
AGAGAGTTTGCAAGTAAAGA+AGG + chr1_1:69880077-69880096 None:intergenic 35.0%
AGTATAAGCAGCTATGAAAC+TGG - chr1_1:69880176-69880195 Msa0039890:intron 35.0%
CTTTCAAGAAAACCAGACTT+TGG + chr1_1:69880257-69880276 None:intergenic 35.0%
!!! CAAAGTCTGGTTTTCTTGAA+AGG - chr1_1:69880255-69880274 Msa0039890:CDS 35.0%
! GGTTTTCTTGAAAGGGATAT+TGG - chr1_1:69880263-69880282 Msa0039890:CDS 35.0%
! TTCAAGTTTGGTGGAACTAA+AGG - chr1_1:69880304-69880323 Msa0039890:CDS 35.0%
! TCAAGTTTGGTGGAACTAAA+GGG - chr1_1:69880305-69880324 Msa0039890:CDS 35.0%
TCGTAGTCTGACTTTGTATT+TGG + chr1_1:69880594-69880613 None:intergenic 35.0%
TGAAGCAGAAGAGTAAATGT+TGG + chr1_1:69880730-69880749 None:intergenic 35.0%
CAAATGAAAGGAATTGAAGG+TGG + chr1_1:69879828-69879847 None:intergenic 35.0%
CACCTTCAATTCCTTTCATT+TGG - chr1_1:69879826-69879845 Msa0039890:CDS 35.0%
TCCCAAATGAAAGGAATTGA+AGG + chr1_1:69879831-69879850 None:intergenic 35.0%
!!! GGTTTTGTTTCCCAAATGAA+AGG + chr1_1:69879840-69879859 None:intergenic 35.0%
TTCATTTGGGAAACAAAACC+AGG - chr1_1:69879840-69879859 Msa0039890:CDS 35.0%
! CAATCTTTTATAGGAATGCC+TGG + chr1_1:69879861-69879880 None:intergenic 35.0%
CAGGCATTCCTATAAAAGAT+TGG - chr1_1:69879859-69879878 Msa0039890:CDS 35.0%
!! ACTGGCTTCCAATCTTTTAT+AGG + chr1_1:69879870-69879889 None:intergenic 35.0%
TATAAAAGATTGGAAGCCAG+TGG - chr1_1:69879869-69879888 Msa0039890:CDS 35.0%
! GGTTTTTCTTCCCAAACAAA+GGG + chr1_1:69879948-69879967 None:intergenic 35.0%
! AGGTTTTTCTTCCCAAACAA+AGG + chr1_1:69879949-69879968 None:intergenic 35.0%
TTTGTTTGGGAAGAAAAACC+TGG - chr1_1:69879948-69879967 Msa0039890:intron 35.0%
CATCAACATGTGAGAAACTA+GGG + chr1_1:69879983-69880002 None:intergenic 35.0%
TCATCAACATGTGAGAAACT+AGG + chr1_1:69879984-69880003 None:intergenic 35.0%
AGAGAGTTTGCAAGTAAAGA+AGG + chr1_1:69880077-69880096 None:intergenic 35.0%
AGTATAAGCAGCTATGAAAC+TGG - chr1_1:69880176-69880195 Msa0039890:intron 35.0%
CTTTCAAGAAAACCAGACTT+TGG + chr1_1:69880257-69880276 None:intergenic 35.0%
!!! CAAAGTCTGGTTTTCTTGAA+AGG - chr1_1:69880255-69880274 Msa0039890:CDS 35.0%
! GGTTTTCTTGAAAGGGATAT+TGG - chr1_1:69880263-69880282 Msa0039890:CDS 35.0%
! TTCAAGTTTGGTGGAACTAA+AGG - chr1_1:69880304-69880323 Msa0039890:CDS 35.0%
! TCAAGTTTGGTGGAACTAAA+GGG - chr1_1:69880305-69880324 Msa0039890:CDS 35.0%
TCGTAGTCTGACTTTGTATT+TGG + chr1_1:69880594-69880613 None:intergenic 35.0%
TGAAGCAGAAGAGTAAATGT+TGG + chr1_1:69880730-69880749 None:intergenic 35.0%
TGACAAAATGATGAGTCCAC+TGG + chr1_1:69879888-69879907 None:intergenic 40.0%
TTGCCTCAATTCCCTTTGTT+TGG - chr1_1:69879934-69879953 Msa0039890:intron 40.0%
! TGCCTCAATTCCCTTTGTTT+GGG - chr1_1:69879935-69879954 Msa0039890:intron 40.0%
TTCCCAAACAAAGGGAATTG+AGG + chr1_1:69879940-69879959 None:intergenic 40.0%
AACATGTGAGAAACTAGGGA+GGG + chr1_1:69879979-69879998 None:intergenic 40.0%
GAGTGAAACCATAACTAGCT+TGG - chr1_1:69880004-69880023 Msa0039890:intron 40.0%
TTCTAGGTCCAAGCTAGTTA+TGG + chr1_1:69880015-69880034 None:intergenic 40.0%
TAAGCAGCTATGAAACTGGA+AGG - chr1_1:69880180-69880199 Msa0039890:intron 40.0%
ACTGGAAGGTCAAGTTTAAC+TGG - chr1_1:69880194-69880213 Msa0039890:CDS 40.0%
TCAAGAAAACCAGACTTTGG+TGG + chr1_1:69880254-69880273 None:intergenic 40.0%
TTGCTTCCTTGACATATCAC+AGG + chr1_1:69880357-69880376 None:intergenic 40.0%
ATGGAACAAGTTACCTTTGG+TGG + chr1_1:69880458-69880477 None:intergenic 40.0%
ACAAGCAGCAGTATCATTGA+AGG - chr1_1:69880800-69880819 Msa0039890:CDS 40.0%
CAAGCAGCAGTATCATTGAA+GGG - chr1_1:69880801-69880820 Msa0039890:CDS 40.0%
!! TGAAGAGAAAGTACTACCCT+AGG - chr1_1:69880828-69880847 Msa0039890:CDS 40.0%
TGACAAAATGATGAGTCCAC+TGG + chr1_1:69879888-69879907 None:intergenic 40.0%
TTGCCTCAATTCCCTTTGTT+TGG - chr1_1:69879934-69879953 Msa0039890:intron 40.0%
! TGCCTCAATTCCCTTTGTTT+GGG - chr1_1:69879935-69879954 Msa0039890:intron 40.0%
TTCCCAAACAAAGGGAATTG+AGG + chr1_1:69879940-69879959 None:intergenic 40.0%
AACATGTGAGAAACTAGGGA+GGG + chr1_1:69879979-69879998 None:intergenic 40.0%
GAGTGAAACCATAACTAGCT+TGG - chr1_1:69880004-69880023 Msa0039890:intron 40.0%
TTCTAGGTCCAAGCTAGTTA+TGG + chr1_1:69880015-69880034 None:intergenic 40.0%
TAAGCAGCTATGAAACTGGA+AGG - chr1_1:69880180-69880199 Msa0039890:intron 40.0%
ACTGGAAGGTCAAGTTTAAC+TGG - chr1_1:69880194-69880213 Msa0039890:CDS 40.0%
TCAAGAAAACCAGACTTTGG+TGG + chr1_1:69880254-69880273 None:intergenic 40.0%
TTGCTTCCTTGACATATCAC+AGG + chr1_1:69880357-69880376 None:intergenic 40.0%
ATGGAACAAGTTACCTTTGG+TGG + chr1_1:69880458-69880477 None:intergenic 40.0%
ACAAGCAGCAGTATCATTGA+AGG - chr1_1:69880800-69880819 Msa0039890:CDS 40.0%
CAAGCAGCAGTATCATTGAA+GGG - chr1_1:69880801-69880820 Msa0039890:CDS 40.0%
!! TGAAGAGAAAGTACTACCCT+AGG - chr1_1:69880828-69880847 Msa0039890:CDS 40.0%
ACATGTGAGAAACTAGGGAG+GGG + chr1_1:69879978-69879997 None:intergenic 45.0%
CAACATGTGAGAAACTAGGG+AGG + chr1_1:69879980-69879999 None:intergenic 45.0%
CCAGACTTTGGTGGAAACAA+AGG + chr1_1:69880245-69880264 None:intergenic 45.0%
! CCTTTGTTTCCACCAAAGTC+TGG - chr1_1:69880242-69880261 Msa0039890:CDS 45.0%
TCAAGGAAGCAACCAACACT+TGG - chr1_1:69880365-69880384 Msa0039890:CDS 45.0%
GAACAAATGGGATCCACCAA+AGG - chr1_1:69880442-69880461 Msa0039890:CDS 45.0%
! ACCACGAGAAAGCAAGCTTT+TGG - chr1_1:69880761-69880780 Msa0039890:CDS 45.0%
! TCCAAAAGCTTGCTTTCTCG+TGG + chr1_1:69880765-69880784 None:intergenic 45.0%
ACATGTGAGAAACTAGGGAG+GGG + chr1_1:69879978-69879997 None:intergenic 45.0%
CAACATGTGAGAAACTAGGG+AGG + chr1_1:69879980-69879999 None:intergenic 45.0%
CCAGACTTTGGTGGAAACAA+AGG + chr1_1:69880245-69880264 None:intergenic 45.0%
! CCTTTGTTTCCACCAAAGTC+TGG - chr1_1:69880242-69880261 Msa0039890:CDS 45.0%
TCAAGGAAGCAACCAACACT+TGG - chr1_1:69880365-69880384 Msa0039890:CDS 45.0%
GAACAAATGGGATCCACCAA+AGG - chr1_1:69880442-69880461 Msa0039890:CDS 45.0%
! ACCACGAGAAAGCAAGCTTT+TGG - chr1_1:69880761-69880780 Msa0039890:CDS 45.0%
! TCCAAAAGCTTGCTTTCTCG+TGG + chr1_1:69880765-69880784 None:intergenic 45.0%
!! AAACTAGGGAGGGGTATTCC+AGG + chr1_1:69879969-69879988 None:intergenic 50.0%
!! TGGAGTTTGCTGTAGTGGCA+TGG + chr1_1:69880126-69880145 None:intergenic 50.0%
!! GAGGATGGAGTTTGCTGTAG+TGG + chr1_1:69880131-69880150 None:intergenic 50.0%
!! AAACTAGGGAGGGGTATTCC+AGG + chr1_1:69879969-69879988 None:intergenic 50.0%
!! TGGAGTTTGCTGTAGTGGCA+TGG + chr1_1:69880126-69880145 None:intergenic 50.0%
!! GAGGATGGAGTTTGCTGTAG+TGG + chr1_1:69880131-69880150 None:intergenic 50.0%
TCCATCCTCTCCAGCTTCGT+CGG - chr1_1:69880142-69880161 Msa0039890:intron 55.0%
CTATCCATCTCCGACGAAGC+TGG + chr1_1:69880155-69880174 None:intergenic 55.0%
TCCATCCTCTCCAGCTTCGT+CGG - chr1_1:69880142-69880161 Msa0039890:intron 55.0%
CTATCCATCTCCGACGAAGC+TGG + chr1_1:69880155-69880174 None:intergenic 55.0%
TCCGACGAAGCTGGAGAGGA+TGG + chr1_1:69880146-69880165 None:intergenic 60.0%
CATCTCCGACGAAGCTGGAG+AGG + chr1_1:69880150-69880169 None:intergenic 60.0%
CTCTCCAGCTTCGTCGGAGA+TGG - chr1_1:69880148-69880167 Msa0039890:intron 60.0%
TCCGACGAAGCTGGAGAGGA+TGG + chr1_1:69880146-69880165 None:intergenic 60.0%
CATCTCCGACGAAGCTGGAG+AGG + chr1_1:69880150-69880169 None:intergenic 60.0%
CTCTCCAGCTTCGTCGGAGA+TGG - chr1_1:69880148-69880167 Msa0039890:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 69879789 69880865 69879789 ID=Msa0039890;Name=Msa0039890
chr1_1 mRNA 69879789 69880865 69879789 ID=Msa0039890-mRNA-1;Parent=Msa0039890;Name=Msa0039890-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|260
chr1_1 exon 69880191 69880865 69880191 ID=Msa0039890-mRNA-1:exon:22879;Parent=Msa0039890-mRNA-1
chr1_1 exon 69879789 69879896 69879789 ID=Msa0039890-mRNA-1:exon:22878;Parent=Msa0039890-mRNA-1
chr1_1 CDS 69880191 69880865 69880191 ID=Msa0039890-mRNA-1:cds;Parent=Msa0039890-mRNA-1
chr1_1 CDS 69879789 69879896 69879789 ID=Msa0039890-mRNA-1:cds;Parent=Msa0039890-mRNA-1
Gene Sequence

>Msa0039890

ATGAATGAAAAAGAAAGGAAGAAACATATTAGGGAACCACCTTCAATTCCTTTCATTTGGGAAACAAAACCAGGCATTCCTATAAAAGATTGGAAGCCAGTGGACTCATCATTTTGTCAATTACCAAAAACTCCACTAAAACAAATTGCCTCAATTCCCTTTGTTTGGGAAGAAAAACCTGGAATACCCCTCCCTAGTTTCTCACATGTTGATGAGAGTGAAACCATAACTAGCTTGGACCTAGAATCATTTAGTTTTGATACCAATGAATCATTTAACTCAGTTCCTTCTTTACTTGCAAACTCTCTTGTATCATCAACTAAACTCTCTACAGCCATGCCACTACAGCAAACTCCATCCTCTCCAGCTTCGTCGGAGATGGATAGTAGTATAAGCAGCTATGAAACTGGAAGGTCAAGTTTAACTGGTTCTGCTTTTTTGGAATGTCTATTTCCTTTGTTTCCACCAAAGTCTGGTTTTCTTGAAAGGGATATTGGTTACAATGAAAAGTTAAGTTCAAGTTTGGTGGAACTAAAGGGAAATGATTTTGAGAATGAAGATTATACCTGTGATATGTCAAGGAAGCAACCAACACTTGGAGAGTTAATTATGATGAGCAGAAGAAGAAGCTGCATAAGAAAAGCAACTCAAATGAACAAATGGGATCCACCAAAGAAAACCACGAGAAAGCAAGCTTTTGGATGCTTCTCAGTTGTAACAAGCAGCAGTATCATTGAAGGGCTGTTGAAGAGAAAGTACTACCCTAGGCTGAAACTAGTCTAA

Protein sequence

>Msa0039890

MNEKERKKHIREPPSIPFIWETKPGIPIKDWKPVDSSFCQLPKTPLKQIASIPFVWEEKPGIPLPSFSHVDESETITSLDLESFSFDTNESFNSVPSLLANSLVSSTKLSTAMPLQQTPSSPASSEMDSSISSYETGRSSLTGSAFLECLFPLFPPKSGFLERDIGYNEKLSSSLVELKGNDFENEDYTCDMSRKQPTLGELIMMSRRRSCIRKATQMNKWDPPKKTTRKQAFGCFSVVTSSSIIEGLLKRKYYPRLKLV*