AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0795320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0795320 MtrunA17_Chr5g0397831 98.729 236 3 0 1 236 1 236 9.14e-173 474
Msa0795320 MtrunA17_Chr8g0386341 55.508 236 92 3 3 236 24 248 3.96e-91 268
Msa0795320 MtrunA17_Chr5g0397821 57.477 214 82 1 23 236 21 225 4.43e-89 263
Msa0795320 MtrunA17_Chr5g0428801 39.147 258 127 7 1 236 1 250 5.90e-55 178
Msa0795320 MtrunA17_Chr3g0142781 42.570 249 114 8 9 236 9 249 8.38e-53 173
Msa0795320 MtrunA17_Chr1g0156711 41.200 250 118 8 8 235 3 245 4.50e-51 169
Msa0795320 MtrunA17_Chr5g0424221 42.460 252 115 9 1 235 1 239 9.40e-51 166
Msa0795320 MtrunA17_Chr8g0352471 40.392 255 125 9 1 236 1 247 2.06e-50 167
Msa0795320 MtrunA17_Chr8g0371771 41.525 236 119 8 11 235 16 243 5.33e-50 165
Msa0795320 MtrunA17_Chr8g0351851 39.600 250 121 9 3 235 1 237 3.52e-49 161
Msa0795320 MtrunA17_Chr8g0357311 38.911 257 126 9 1 236 1 247 7.51e-49 161
Msa0795320 MtrunA17_Chr5g0405611 40.586 239 121 10 9 236 80 308 3.83e-48 162
Msa0795320 MtrunA17_Chr8g0371781 42.324 241 107 8 19 235 21 253 3.84e-48 160
Msa0795320 MtrunA17_Chr8g0392961 39.921 253 124 8 2 236 3 245 5.79e-48 158
Msa0795320 MtrunA17_Chr1g0154591 41.558 231 110 7 23 236 10 232 3.26e-47 156
Msa0795320 MtrunA17_Chr5g0405581 38.610 259 128 9 1 236 1 251 5.36e-47 157
Msa0795320 MtrunA17_Chr6g0482741 38.340 253 123 10 4 236 1 240 7.28e-47 155
Msa0795320 MtrunA17_Chr3g0141341 39.827 231 114 8 23 236 9 231 1.92e-46 154
Msa0795320 MtrunA17_Chr7g0239131 36.694 248 132 8 6 236 3 242 3.40e-46 154
Msa0795320 MtrunA17_Chr3g0112091 36.885 244 128 9 11 236 2 237 6.02e-46 153
Msa0795320 MtrunA17_Chr4g0037331 38.956 249 128 10 1 235 1 239 1.04e-45 155
Msa0795320 MtrunA17_Chr4g0037351 38.710 248 122 9 11 236 9 248 1.22e-45 154
Msa0795320 MtrunA17_Chr8g0386351 46.914 162 79 3 1 161 43 198 1.47e-45 151
Msa0795320 MtrunA17_Chr2g0312181 37.200 250 132 7 5 236 1 243 2.20e-44 149
Msa0795320 MtrunA17_Chr1g0180161 37.719 228 116 8 27 236 23 242 5.10e-43 146
Msa0795320 MtrunA17_Chr2g0311561 38.136 236 119 9 20 236 5 232 1.77e-42 145
Msa0795320 MtrunA17_Chr2g0311521 40.984 244 111 11 15 236 15 247 2.54e-41 150
Msa0795320 MtrunA17_Chr1g0180121 37.008 254 130 10 1 236 1 242 4.68e-41 140
Msa0795320 MtrunA17_Chr7g0265011 34.252 254 140 9 1 236 43 287 8.07e-41 141
Msa0795320 MtrunA17_Chr1g0180231 35.857 251 134 9 4 236 1 242 2.68e-39 136
Msa0795320 MtrunA17_Chr1g0179871 35.857 251 134 9 4 236 1 242 2.68e-39 136
Msa0795320 MtrunA17_Chr1g0179851 37.719 228 116 8 27 236 20 239 3.97e-39 135
Msa0795320 MtrunA17_Chr1g0179891 36.752 234 122 8 21 236 12 237 4.33e-39 135
Msa0795320 MtrunA17_Chr1g0180221 34.902 255 139 9 1 236 36 282 3.75e-38 134
Msa0795320 MtrunA17_Chr4g0031221 33.471 242 134 8 14 235 17 251 2.28e-37 131
Msa0795320 MtrunA17_Chr2g0311551 40.506 237 112 10 20 236 17 244 2.33e-37 138
Msa0795320 MtrunA17_Chr6g0452331 34.231 260 139 11 1 236 1 252 3.79e-36 128
Msa0795320 MtrunA17_Chr2g0311531 40.000 215 108 8 25 236 26 222 3.49e-35 125
Msa0795320 MtrunA17_Chr2g0311501 39.247 186 92 9 64 236 5 182 2.92e-27 103
Msa0795320 MtrunA17_Chr1g0179911 29.084 251 144 9 3 236 5 238 2.80e-26 102
Msa0795320 MtrunA17_Chr5g0406771 37.037 162 82 6 28 169 15 176 1.48e-23 93.2
Msa0795320 MtrunA17_Chr2g0309611 27.149 221 136 8 30 234 38 249 1.51e-17 79.0
Msa0795320 MtrunA17_Chr1g0180181 42.045 88 39 2 155 236 18 99 2.59e-15 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0795320 AT4G11650.1 57.456 228 87 2 9 236 6 223 1.44e-95 280
Msa0795320 AT1G75050.1 42.105 247 118 7 7 236 5 243 1.01e-53 173
Msa0795320 AT1G75040.1 42.623 244 117 7 7 236 5 239 2.94e-53 172
Msa0795320 AT1G75800.1 42.169 249 113 8 11 236 8 248 4.33e-53 174
Msa0795320 AT1G75030.1 40.486 247 122 7 7 236 5 243 7.05e-53 171
Msa0795320 AT4G38670.3 39.370 254 125 9 5 236 1 247 1.18e-50 166
Msa0795320 AT4G38670.1 39.370 254 125 9 5 236 1 247 1.18e-50 166
Msa0795320 AT1G19320.1 39.764 254 126 8 1 235 1 246 8.28e-50 163
Msa0795320 AT2G17860.1 41.897 253 115 9 8 236 5 249 9.46e-50 163
Msa0795320 AT1G77700.2 41.841 239 116 8 9 235 44 271 1.18e-49 165
Msa0795320 AT1G77700.3 41.841 239 116 8 9 235 44 271 1.65e-49 165
Msa0795320 AT4G36010.1 44.444 234 97 9 28 236 25 250 1.14e-48 162
Msa0795320 AT4G36010.2 44.444 234 97 9 28 236 25 250 1.14e-48 162
Msa0795320 AT4G38660.1 39.184 245 126 9 6 236 10 245 2.45e-48 162
Msa0795320 AT4G38670.2 40.756 238 113 8 20 236 1 231 7.41e-48 159
Msa0795320 AT1G77700.1 42.478 226 107 8 22 235 85 299 8.59e-48 161
Msa0795320 AT1G20030.1 40.260 231 109 7 28 236 5 228 1.19e-47 159
Msa0795320 AT4G38660.2 42.601 223 105 9 28 236 10 223 1.21e-47 160
Msa0795320 AT1G20030.2 40.260 231 109 7 28 236 22 245 1.49e-47 159
Msa0795320 AT5G24620.1 37.698 252 124 9 9 236 9 251 6.51e-46 158
Msa0795320 AT5G38280.1 37.097 248 127 7 11 236 10 250 9.23e-46 161
Msa0795320 AT5G24620.4 37.698 252 124 9 9 236 64 306 9.52e-46 159
Msa0795320 AT5G24620.3 37.698 252 124 9 9 236 85 327 1.01e-45 159
Msa0795320 AT5G38280.2 37.097 248 127 7 11 236 10 250 1.15e-45 161
Msa0795320 AT1G73620.1 38.362 232 115 8 23 236 39 260 1.04e-42 145
Msa0795320 AT1G18250.2 37.931 232 118 7 22 236 18 240 1.88e-42 144
Msa0795320 AT1G18250.1 38.095 231 117 7 23 236 18 239 1.89e-42 144
Msa0795320 AT4G24180.5 34.601 263 126 11 4 236 5 251 4.56e-42 144
Msa0795320 AT4G24180.6 35.827 254 118 10 12 236 19 256 9.37e-42 143
Msa0795320 AT4G24180.2 34.601 263 126 11 4 236 5 251 1.19e-41 144
Msa0795320 AT4G24180.1 35.827 254 118 10 12 236 19 256 2.52e-41 143
Msa0795320 AT5G02140.2 36.000 250 133 10 5 236 1 241 1.17e-40 140
Msa0795320 AT5G02140.1 36.000 250 133 10 5 236 1 241 1.33e-40 141
Msa0795320 AT4G24180.4 33.198 247 120 10 4 220 5 236 5.18e-36 130
Msa0795320 AT4G24180.3 34.454 238 112 9 12 220 19 241 7.80e-36 129
Msa0795320 AT5G40020.1 33.921 227 124 8 28 236 30 248 1.16e-34 124
Msa0795320 AT2G28790.1 31.373 255 145 8 4 235 1 248 5.80e-33 120
Msa0795320 AT1G70250.1 33.778 225 129 6 28 236 147 367 6.96e-33 126
Msa0795320 AT2G28790.2 31.373 255 145 8 4 235 26 273 8.80e-33 120
Msa0795320 AT4G36000.2 44.521 146 70 5 94 236 1 138 3.50e-32 117
Msa0795320 AT4G36000.1 44.521 146 70 5 94 236 1 138 3.50e-32 117
Msa0795320 AT4G18253.1 31.967 244 135 9 11 236 8 238 3.29e-29 110
Msa0795320 AT4G18250.1 34.545 220 123 7 30 236 61 272 3.50e-24 100
Msa0795320 AT5G24620.2 38.583 127 57 4 124 236 15 134 6.62e-18 81.3
Msa0795320 AT2G24810.1 25.926 243 121 8 1 235 1 192 2.67e-14 69.3

Find 62 sgRNAs with CRISPR-Local

Find 64 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTATTCTAAGTTCTTTA+AGG 0.109038 5_3:+7264664 Msa0795320:CDS
GTGCTGGTTGCATCATCTTT+AGG 0.231896 5_3:-7264713 None:intergenic
TGCTGGTTGCATCATCTTTA+GGG 0.281050 5_3:-7264712 None:intergenic
GTACAAGTAACGCAAGAATC+TGG 0.345424 5_3:+7264261 Msa0795320:CDS
AATTGTACTGCCGATATTAA+CGG 0.362766 5_3:+7264506 Msa0795320:CDS
TCCTGCTTGTGCTGCAGCTA+TGG 0.386772 5_3:-7264129 None:intergenic
AATTGCACTTTCGACAATTC+AGG 0.390196 5_3:+7264293 Msa0795320:CDS
TGCTGCAGCTATGGATGTTA+TGG 0.396488 5_3:-7264120 None:intergenic
AAGAACTTAGAATAAGTTGT+TGG 0.409578 5_3:-7264659 None:intergenic
GCAAATTCCATGATTGTGTT+TGG 0.415246 5_3:-7264380 None:intergenic
TTAGGGTAACTATAAGCATA+AGG 0.421618 5_3:-7264695 None:intergenic
ACACTAGAGTGTCAAACAAT+AGG 0.437709 5_3:+7264350 Msa0795320:CDS
TGAATTGTCGAAAGTGCAAT+TGG 0.451662 5_3:-7264291 None:intergenic
TTGAGTTTCATGCCACCGCC+GGG 0.462414 5_3:-7264203 None:intergenic
GCCACCGCCGGGGAAGGCTG+CGG 0.464024 5_3:-7264192 None:intergenic
GTTGAGTTTCATGCCACCGC+CGG 0.464550 5_3:-7264204 None:intergenic
GCCGCAGCCTTCCCCGGCGG+TGG 0.465884 5_3:+7264191 Msa0795320:CDS
ACTTTCGACAATTCAGGTCT+CGG 0.467109 5_3:+7264299 Msa0795320:CDS
ATTCTAAGTTCTTTAAGGAT+AGG 0.468720 5_3:+7264669 Msa0795320:CDS
TTTCATGCCACCGCCGGGGA+AGG 0.472855 5_3:-7264198 None:intergenic
AGGACACTCTCCGTTAATAT+CGG 0.474742 5_3:-7264516 None:intergenic
ACAAATGCAACTACACCGTA+TGG 0.475606 5_3:+7264168 Msa0795320:CDS
TCTTGCGTTACTTGTACCAT+TGG 0.482280 5_3:-7264255 None:intergenic
TACAAGTAACGCAAGAATCT+GGG 0.482336 5_3:+7264262 Msa0795320:CDS
AACTCAACACAGGTGAATCA+TGG 0.485867 5_3:+7264219 Msa0795320:CDS
GGGGAAGGCTGCGGCCCATA+CGG 0.488521 5_3:-7264183 None:intergenic
GCGAAACATCATAGAAATCA+AGG 0.493251 5_3:-7264421 None:intergenic
TACACCACCAAACACAATCA+TGG 0.514809 5_3:+7264373 Msa0795320:CDS
TATGATGTTTCGCTTGTACA+AGG 0.516071 5_3:+7264431 Msa0795320:CDS
AACCAGCACATTCTCTTGTA+CGG 0.516261 5_3:+7264727 Msa0795320:CDS
GTATGGGCCGCAGCCTTCCC+CGG 0.524947 5_3:+7264185 Msa0795320:CDS
ACCACACGTGGCAGAGGCAT+TGG 0.525682 5_3:-7264636 None:intergenic
AGAGTGTCCTACTCCGCTTA+AGG 0.527835 5_3:+7264529 Msa0795320:CDS
AAACCGTCTTTAAATTCTTG+TGG 0.529244 5_3:+7264476 Msa0795320:CDS
GGTCTCGGAAAGTGTCAAAC+CGG 0.530011 5_3:+7264314 Msa0795320:CDS
TAGTGTTCCGTTACAATCAC+CGG 0.530720 5_3:-7264333 None:intergenic
AATATCGGCAGTACAATTAA+CGG 0.535596 5_3:-7264501 None:intergenic
CCTACTCCGCTTAAGGTACC+AGG 0.535696 5_3:+7264536 Msa0795320:CDS
CATCCACCTGGTACCTTAAG+CGG 0.538175 5_3:-7264542 None:intergenic
ACCAGCACATTCTCTTGTAC+GGG 0.539521 5_3:+7264728 Msa0795320:CDS
AATTCCATGATTGTGTTTGG+TGG 0.543379 5_3:-7264377 None:intergenic
TAGGGTAACTATAAGCATAA+GGG 0.543431 5_3:-7264694 None:intergenic
CTATGAGAAGGAAGATTGAG+AGG 0.547342 5_3:-7264097 None:intergenic
TCCATAGCTGCAGCACAAGC+AGG 0.551144 5_3:+7264128 Msa0795320:CDS
TGTTGGACCACACGTGGCAG+AGG 0.556682 5_3:-7264642 None:intergenic
CCTGGTACCTTAAGCGGAGT+AGG 0.559484 5_3:-7264536 None:intergenic
GTTGTATCAAACGTAGTACA+AGG 0.567408 5_3:-7264572 None:intergenic
ACCAATGCCTCTGCCACGTG+TGG 0.578890 5_3:+7264635 Msa0795320:CDS
GTACCACAAGAATTTAAAGA+CGG 0.598224 5_3:-7264479 None:intergenic
TCCCGTACAAGAGAATGTGC+TGG 0.600307 5_3:-7264729 None:intergenic
CAAGGATTGTTACATCCACC+TGG 0.601793 5_3:-7264554 None:intergenic
CAAATGCAACTACACCGTAT+GGG 0.615897 5_3:+7264169 Msa0795320:CDS
TGTCAAACCGGTGATTGTAA+CGG 0.616265 5_3:+7264326 Msa0795320:CDS
TGGAACATGAACATAACCAA+TGG 0.633971 5_3:+7264239 Msa0795320:CDS
TGGATGTTATGGCTATGAGA+AGG 0.634571 5_3:-7264109 None:intergenic
AGCACATTCTCTTGTACGGG+AGG 0.640577 5_3:+7264731 Msa0795320:CDS
ATAAGTTGTTGGACCACACG+TGG 0.652976 5_3:-7264648 None:intergenic
ACAAGTAACGCAAGAATCTG+GGG 0.665144 5_3:+7264263 Msa0795320:CDS
TGAGTTTCATGCCACCGCCG+GGG 0.679603 5_3:-7264202 None:intergenic
TGGGCCGCAGCCTTCCCCGG+CGG 0.703292 5_3:+7264188 Msa0795320:CDS
GGTGGCATGAAACTCAACAC+AGG 0.727771 5_3:+7264209 Msa0795320:CDS
ACTCCGCTTAAGGTACCAGG+TGG 0.736474 5_3:+7264539 Msa0795320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTTATTCTAAGTTCTTTA+AGG + chr5_3:7264664-7264683 Msa0795320:CDS 20.0%
! AAGAACTTAGAATAAGTTGT+TGG - chr5_3:7264662-7264681 None:intergenic 25.0%
!! ATTCTAAGTTCTTTAAGGAT+AGG + chr5_3:7264669-7264688 Msa0795320:CDS 25.0%
!! AAAGACGGTTTTAACAGAAT+TGG - chr5_3:7264467-7264486 None:intergenic 30.0%
AAACCGTCTTTAAATTCTTG+TGG + chr5_3:7264476-7264495 Msa0795320:CDS 30.0%
GTACCACAAGAATTTAAAGA+CGG - chr5_3:7264482-7264501 None:intergenic 30.0%
AATATCGGCAGTACAATTAA+CGG - chr5_3:7264504-7264523 None:intergenic 30.0%
AATTGTACTGCCGATATTAA+CGG + chr5_3:7264506-7264525 Msa0795320:CDS 30.0%
TAGGGTAACTATAAGCATAA+GGG - chr5_3:7264697-7264716 None:intergenic 30.0%
TTAGGGTAACTATAAGCATA+AGG - chr5_3:7264698-7264717 None:intergenic 30.0%
!! GAGGTTTGTTTTCATGATGA+TGG - chr5_3:7264081-7264100 None:intergenic 35.0%
TGGAACATGAACATAACCAA+TGG + chr5_3:7264239-7264258 Msa0795320:CDS 35.0%
TACAAGTAACGCAAGAATCT+GGG + chr5_3:7264262-7264281 Msa0795320:CDS 35.0%
! TGAATTGTCGAAAGTGCAAT+TGG - chr5_3:7264294-7264313 None:intergenic 35.0%
AATTGCACTTTCGACAATTC+AGG + chr5_3:7264293-7264312 Msa0795320:CDS 35.0%
! ACACTAGAGTGTCAAACAAT+AGG + chr5_3:7264350-7264369 Msa0795320:CDS 35.0%
AATTCCATGATTGTGTTTGG+TGG - chr5_3:7264380-7264399 None:intergenic 35.0%
GCAAATTCCATGATTGTGTT+TGG - chr5_3:7264383-7264402 None:intergenic 35.0%
GCGAAACATCATAGAAATCA+AGG - chr5_3:7264424-7264443 None:intergenic 35.0%
TATGATGTTTCGCTTGTACA+AGG + chr5_3:7264431-7264450 Msa0795320:CDS 35.0%
GTTGTATCAAACGTAGTACA+AGG - chr5_3:7264575-7264594 None:intergenic 35.0%
CTATGAGAAGGAAGATTGAG+AGG - chr5_3:7264100-7264119 None:intergenic 40.0%
TGGATGTTATGGCTATGAGA+AGG - chr5_3:7264112-7264131 None:intergenic 40.0%
ACAAATGCAACTACACCGTA+TGG + chr5_3:7264168-7264187 Msa0795320:CDS 40.0%
CAAATGCAACTACACCGTAT+GGG + chr5_3:7264169-7264188 Msa0795320:CDS 40.0%
AACTCAACACAGGTGAATCA+TGG + chr5_3:7264219-7264238 Msa0795320:CDS 40.0%
TCTTGCGTTACTTGTACCAT+TGG - chr5_3:7264258-7264277 None:intergenic 40.0%
GTACAAGTAACGCAAGAATC+TGG + chr5_3:7264261-7264280 Msa0795320:CDS 40.0%
ACAAGTAACGCAAGAATCTG+GGG + chr5_3:7264263-7264282 Msa0795320:CDS 40.0%
ACTTTCGACAATTCAGGTCT+CGG + chr5_3:7264299-7264318 Msa0795320:CDS 40.0%
TGTCAAACCGGTGATTGTAA+CGG + chr5_3:7264326-7264345 Msa0795320:CDS 40.0%
TAGTGTTCCGTTACAATCAC+CGG - chr5_3:7264336-7264355 None:intergenic 40.0%
TACACCACCAAACACAATCA+TGG + chr5_3:7264373-7264392 Msa0795320:CDS 40.0%
AGGACACTCTCCGTTAATAT+CGG - chr5_3:7264519-7264538 None:intergenic 40.0%
! TGCTGGTTGCATCATCTTTA+GGG - chr5_3:7264715-7264734 None:intergenic 40.0%
AACCAGCACATTCTCTTGTA+CGG + chr5_3:7264727-7264746 Msa0795320:CDS 40.0%
TGCTGCAGCTATGGATGTTA+TGG - chr5_3:7264123-7264142 None:intergenic 45.0%
CAAGGATTGTTACATCCACC+TGG - chr5_3:7264557-7264576 None:intergenic 45.0%
ATAAGTTGTTGGACCACACG+TGG - chr5_3:7264651-7264670 None:intergenic 45.0%
!! GTGCTGGTTGCATCATCTTT+AGG - chr5_3:7264716-7264735 None:intergenic 45.0%
ACCAGCACATTCTCTTGTAC+GGG + chr5_3:7264728-7264747 Msa0795320:CDS 45.0%
GGTGGCATGAAACTCAACAC+AGG + chr5_3:7264209-7264228 Msa0795320:CDS 50.0%
!! GGTCTCGGAAAGTGTCAAAC+CGG + chr5_3:7264314-7264333 Msa0795320:CDS 50.0%
! AGAGTGTCCTACTCCGCTTA+AGG + chr5_3:7264529-7264548 Msa0795320:CDS 50.0%
CATCCACCTGGTACCTTAAG+CGG - chr5_3:7264545-7264564 None:intergenic 50.0%
TCCCGTACAAGAGAATGTGC+TGG - chr5_3:7264732-7264751 None:intergenic 50.0%
AGCACATTCTCTTGTACGGG+AGG + chr5_3:7264731-7264750 Msa0795320:CDS 50.0%
TCCATAGCTGCAGCACAAGC+AGG + chr5_3:7264128-7264147 Msa0795320:CDS 55.0%
TCCTGCTTGTGCTGCAGCTA+TGG - chr5_3:7264132-7264151 None:intergenic 55.0%
TTGAGTTTCATGCCACCGCC+GGG - chr5_3:7264206-7264225 None:intergenic 55.0%
GTTGAGTTTCATGCCACCGC+CGG - chr5_3:7264207-7264226 None:intergenic 55.0%
CCTGGTACCTTAAGCGGAGT+AGG - chr5_3:7264539-7264558 None:intergenic 55.0%
! CCTACTCCGCTTAAGGTACC+AGG + chr5_3:7264536-7264555 Msa0795320:CDS 55.0%
! ACTCCGCTTAAGGTACCAGG+TGG + chr5_3:7264539-7264558 Msa0795320:CDS 55.0%
TGAGTTTCATGCCACCGCCG+GGG - chr5_3:7264205-7264224 None:intergenic 60.0%
ACCAATGCCTCTGCCACGTG+TGG + chr5_3:7264635-7264654 Msa0795320:CDS 60.0%
! ACCACACGTGGCAGAGGCAT+TGG - chr5_3:7264639-7264658 None:intergenic 60.0%
TGTTGGACCACACGTGGCAG+AGG - chr5_3:7264645-7264664 None:intergenic 60.0%
TTTCATGCCACCGCCGGGGA+AGG - chr5_3:7264201-7264220 None:intergenic 65.0%
GGGGAAGGCTGCGGCCCATA+CGG - chr5_3:7264186-7264205 None:intergenic 70.0%
GTATGGGCCGCAGCCTTCCC+CGG + chr5_3:7264185-7264204 Msa0795320:CDS 70.0%
! TGGGCCGCAGCCTTCCCCGG+CGG + chr5_3:7264188-7264207 Msa0795320:CDS 80.0%
! GCCACCGCCGGGGAAGGCTG+CGG - chr5_3:7264195-7264214 None:intergenic 80.0%
! GCCGCAGCCTTCCCCGGCGG+TGG + chr5_3:7264191-7264210 Msa0795320:CDS 85.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 7264074 7264784 7264074 ID=Msa0795320;Name=Msa0795320
chr5_3 mRNA 7264074 7264784 7264074 ID=Msa0795320-mRNA-1;Parent=Msa0795320;Name=Msa0795320-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|-1|0|1|-1|1|1|0|236
chr5_3 exon 7264074 7264784 7264074 ID=Msa0795320-mRNA-1:exon:2945;Parent=Msa0795320-mRNA-1
chr5_3 CDS 7264074 7264784 7264074 ID=Msa0795320-mRNA-1:cds;Parent=Msa0795320-mRNA-1
Gene Sequence

>Msa0795320

ATGGCCATCATCATGAAAACAAACCTCTCAATCTTCCTTCTCATAGCCATAACATCCATAGCTGCAGCACAAGCAGGAAGATTCAATATCACAAACAAATGCAACTACACCGTATGGGCCGCAGCCTTCCCCGGCGGTGGCATGAAACTCAACACAGGTGAATCATGGAACATGAACATAACCAATGGTACAAGTAACGCAAGAATCTGGGGTCGAACCAATTGCACTTTCGACAATTCAGGTCTCGGAAAGTGTCAAACCGGTGATTGTAACGGAACACTAGAGTGTCAAACAATAGGTACACCACCAAACACAATCATGGAATTTGCTTTGAACATGTACAACGACCTTGATTTCTATGATGTTTCGCTTGTACAAGGTTTCAATATTCCAATTCTGTTAAAACCGTCTTTAAATTCTTGTGGTACCGTTAATTGTACTGCCGATATTAACGGAGAGTGTCCTACTCCGCTTAAGGTACCAGGTGGATGTAACAATCCTTGTACTACGTTTGATACAACTGAATATTGTTGCAACTCTGATTCTGCTAGATCTGCAGCTACCAATGCCTCTGCCACGTGTGGTCCAACAACTTATTCTAAGTTCTTTAAGGATAGGTGCCCTTATGCTTATAGTTACCCTAAAGATGATGCAACCAGCACATTCTCTTGTACGGGAGGAACAACTTATGATGTTGTCTTTTGTCCTTAA

Protein sequence

>Msa0795320

MAIIMKTNLSIFLLIAITSIAAAQAGRFNITNKCNYTVWAAAFPGGGMKLNTGESWNMNITNGTSNARIWGRTNCTFDNSGLGKCQTGDCNGTLECQTIGTPPNTIMEFALNMYNDLDFYDVSLVQGFNIPILLKPSLNSCGTVNCTADINGECPTPLKVPGGCNNPCTTFDTTEYCCNSDSARSAATNASATCGPTTYSKFFKDRCPYAYSYPKDDATSTFSCTGGTTYDVVFCP*