AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0180820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0180820 MtrunA17_Chr1g0204471 95.038 262 11 1 1 260 1 262 2.95e-176 485
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0180820 AT5G51680.1 30.294 340 148 9 4 260 10 343 5.28e-23 96.3

Find 57 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCTTCAATTCCTTTCATT+TGG 0.224391 1_4:+68813925 Msa0180820:CDS
AAGAAAGGAAGAAACATATT+AGG 0.233439 1_4:+68813898 Msa0180820:CDS
TTGCCTCAATTCCCTTTGTT+TGG 0.279099 1_4:+68814033 Msa0180820:CDS
ACTGGAAGGTCAAGTTTAAC+TGG 0.341492 1_4:+68814293 Msa0180820:CDS
ACCTTCAATTCCTTTCATTT+GGG 0.345813 1_4:+68813926 Msa0180820:CDS
TATCAAAACTAAATGATTCT+AGG 0.360427 1_4:-68814127 None:intergenic
TGATAAGTTAAGTTCAAGTT+TGG 0.369844 1_4:+68814391 Msa0180820:CDS
ACCACGAGAAAGCAAGCTTT+TGG 0.370273 1_4:+68814860 Msa0180820:CDS
TGCCTCAATTCCCTTTGTTT+GGG 0.372035 1_4:+68814034 Msa0180820:CDS
CCTTTGTTTCCACCAAAGTC+TGG 0.375252 1_4:+68814341 Msa0180820:CDS
AAGCAACTCAAATGAACAAA+TGG 0.378323 1_4:+68814528 Msa0180820:CDS
TTCAAGTTTGGTGGAACTAA+AGG 0.388380 1_4:+68814403 Msa0180820:CDS
AACTGAGTTAAATGATTCAT+TGG 0.396407 1_4:-68814150 None:intergenic
AGTATAAGCAGCTATGAAAC+TGG 0.406907 1_4:+68814275 Msa0180820:CDS
AAACTAGGGAGGGGTATTCC+AGG 0.409764 1_4:-68814065 None:intergenic
TTCTAGGTCCAAGCTAGTTA+TGG 0.418005 1_4:-68814111 None:intergenic
AGAAAGGAAGAAACATATTA+GGG 0.423493 1_4:+68813899 Msa0180820:CDS
ATGGAACAAGTTACCTTTGG+TGG 0.430078 1_4:-68814554 None:intergenic
TCAAGTTTGGTGGAACTAAA+GGG 0.439502 1_4:+68814404 Msa0180820:CDS
CAGGCATTCCTATAAAAGAT+TGG 0.447195 1_4:+68813958 Msa0180820:CDS
CTCTCCAGCTTCGTCGGAGA+TGG 0.451790 1_4:+68814247 Msa0180820:CDS
TAAGTTAAGTTCAAGTTTGG+TGG 0.455647 1_4:+68814394 Msa0180820:CDS
CTTTCAAGAAAACCAGACTT+TGG 0.465296 1_4:-68814353 None:intergenic
TTCCCAAACAAAGGGAATTG+AGG 0.478406 1_4:-68814036 None:intergenic
CTTTAGACTAGTTTCAGCCT+AGG 0.480571 1_4:-68814944 None:intergenic
AGAGAGTTTGCAAGTAAAGA+AGG 0.480592 1_4:-68814173 None:intergenic
CTATCCATCTCCGACGAAGC+TGG 0.483008 1_4:-68814251 None:intergenic
TTTAGACTAGTTTCAGCCTA+GGG 0.498911 1_4:-68814943 None:intergenic
TCCCAAATGAAAGGAATTGA+AGG 0.504204 1_4:-68813927 None:intergenic
AGCAACTCAAATGAACAAAT+GGG 0.509084 1_4:+68814529 Msa0180820:CDS
TCATCAACATGTGAGAAACT+AGG 0.514045 1_4:-68814080 None:intergenic
TCAAGAAAACCAGACTTTGG+TGG 0.518874 1_4:-68814350 None:intergenic
ACAAGCAGCAGTATCATTGA+AGG 0.522761 1_4:+68814899 Msa0180820:CDS
TCCGACGAAGCTGGAGAGGA+TGG 0.522845 1_4:-68814242 None:intergenic
ATAATTAACTCTCCAAGTGT+TGG 0.527351 1_4:-68814476 None:intergenic
GAGGATGGAGTTTGCTGTAG+TGG 0.531543 1_4:-68814227 None:intergenic
TCCATCCTCTCCAGCTTCGT+CGG 0.537624 1_4:+68814241 Msa0180820:CDS
TTCATTTGGGAAACAAAACC+AGG 0.538522 1_4:+68813939 Msa0180820:CDS
TCAAGGAAGCAACCAACACT+TGG 0.542435 1_4:+68814464 Msa0180820:CDS
TTGCTTCCTTGACATATCAC+AGG 0.543111 1_4:-68814453 None:intergenic
CCAGACTTTGGTGGAAACAA+AGG 0.545773 1_4:-68814341 None:intergenic
TCCAAAAGCTTGCTTTCTCG+TGG 0.546204 1_4:-68814861 None:intergenic
CATCAACATGTGAGAAACTA+GGG 0.549198 1_4:-68814079 None:intergenic
ATTATACCTGTGATATGTCA+AGG 0.573360 1_4:+68814447 Msa0180820:CDS
GAGTGAAACCATAACTAGCT+TGG 0.574998 1_4:+68814103 Msa0180820:CDS
TGACAAAATGATGAGTCCAC+TGG 0.586915 1_4:-68813984 None:intergenic
TGAAGAGAAAGTACTACCCT+AGG 0.596271 1_4:+68814927 Msa0180820:CDS
CATCTCCGACGAAGCTGGAG+AGG 0.596381 1_4:-68814246 None:intergenic
TGGAGTTTGCTGTAGTGGCA+TGG 0.598354 1_4:-68814222 None:intergenic
CAAATGAAAGGAATTGAAGG+TGG 0.607064 1_4:-68813924 None:intergenic
GAACAAATGGGATCCACCAA+AGG 0.609336 1_4:+68814541 Msa0180820:CDS
ACATGTGAGAAACTAGGGAG+GGG 0.616121 1_4:-68814074 None:intergenic
TAAGCAGCTATGAAACTGGA+AGG 0.618972 1_4:+68814279 Msa0180820:CDS
TATAAAAGATTGGAAGCCAG+TGG 0.619766 1_4:+68813968 Msa0180820:CDS
AACATGTGAGAAACTAGGGA+GGG 0.639709 1_4:-68814075 None:intergenic
CAAGCAGCAGTATCATTGAA+GGG 0.643098 1_4:+68814900 Msa0180820:CDS
CAACATGTGAGAAACTAGGG+AGG 0.699559 1_4:-68814076 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATCAAAACTAAATGATTCT+AGG - chr1_4:68814130-68814149 None:intergenic 20.0%
!! AACGTTTATTGACATAAAAA+TGG - chr1_4:68814576-68814595 None:intergenic 20.0%
!! ATTCAAATTAGCATCTAAAT+TGG + chr1_4:68814735-68814754 Msa0180820:intron 20.0%
!!! AATTGGTTACTTTTTAAGTA+TGG + chr1_4:68814752-68814771 Msa0180820:intron 20.0%
!! TATCAAAACTAAATGATTCT+AGG - chr1_4:68814130-68814149 None:intergenic 20.0%
!! AACGTTTATTGACATAAAAA+TGG - chr1_4:68814576-68814595 None:intergenic 20.0%
!! ATTCAAATTAGCATCTAAAT+TGG + chr1_4:68814735-68814754 Msa0180820:intron 20.0%
!!! AATTGGTTACTTTTTAAGTA+TGG + chr1_4:68814752-68814771 Msa0180820:intron 20.0%
! AAGAAAGGAAGAAACATATT+AGG + chr1_4:68813898-68813917 Msa0180820:CDS 25.0%
! AGAAAGGAAGAAACATATTA+GGG + chr1_4:68813899-68813918 Msa0180820:CDS 25.0%
!!! ATTTGTTTTAGTGGAGTTTT+TGG - chr1_4:68814014-68814033 None:intergenic 25.0%
! AACTGAGTTAAATGATTCAT+TGG - chr1_4:68814153-68814172 None:intergenic 25.0%
!! TGATAAGTTAAGTTCAAGTT+TGG + chr1_4:68814391-68814410 Msa0180820:CDS 25.0%
! TATGTCAATAAACGTTTCTT+TGG + chr1_4:68814580-68814599 Msa0180820:intron 25.0%
! CTAAAACGTTGAATTAAGAT+CGG + chr1_4:68814634-68814653 Msa0180820:intron 25.0%
! ATAATCTCATCGAGAAAAAT+TGG - chr1_4:68814717-68814736 None:intergenic 25.0%
! AAGAAAGGAAGAAACATATT+AGG + chr1_4:68813898-68813917 Msa0180820:CDS 25.0%
! AGAAAGGAAGAAACATATTA+GGG + chr1_4:68813899-68813918 Msa0180820:CDS 25.0%
!!! ATTTGTTTTAGTGGAGTTTT+TGG - chr1_4:68814014-68814033 None:intergenic 25.0%
! AACTGAGTTAAATGATTCAT+TGG - chr1_4:68814153-68814172 None:intergenic 25.0%
!! TGATAAGTTAAGTTCAAGTT+TGG + chr1_4:68814391-68814410 Msa0180820:CDS 25.0%
! TATGTCAATAAACGTTTCTT+TGG + chr1_4:68814580-68814599 Msa0180820:intron 25.0%
! CTAAAACGTTGAATTAAGAT+CGG + chr1_4:68814634-68814653 Msa0180820:intron 25.0%
! ATAATCTCATCGAGAAAAAT+TGG - chr1_4:68814717-68814736 None:intergenic 25.0%
ACCTTCAATTCCTTTCATTT+GGG + chr1_4:68813926-68813945 Msa0180820:CDS 30.0%
!!! ATTGAGGCAATTTGTTTTAG+TGG - chr1_4:68814023-68814042 None:intergenic 30.0%
!!! TTTAACTGGTTCTGCTTTTT+TGG + chr1_4:68814307-68814326 Msa0180820:CDS 30.0%
!!! AAAGTCTGGTTTTCTTGAAA+GGG + chr1_4:68814355-68814374 Msa0180820:CDS 30.0%
! TAAGTTAAGTTCAAGTTTGG+TGG + chr1_4:68814394-68814413 Msa0180820:CDS 30.0%
ATTATACCTGTGATATGTCA+AGG + chr1_4:68814447-68814466 Msa0180820:CDS 30.0%
ATAATTAACTCTCCAAGTGT+TGG - chr1_4:68814479-68814498 None:intergenic 30.0%
AAGCAACTCAAATGAACAAA+TGG + chr1_4:68814528-68814547 Msa0180820:CDS 30.0%
AGCAACTCAAATGAACAAAT+GGG + chr1_4:68814529-68814548 Msa0180820:CDS 30.0%
AAAATGGAACAAGTTACCTT+TGG - chr1_4:68814560-68814579 None:intergenic 30.0%
! GACTTTGTATTTGGAATACT+TGG - chr1_4:68814684-68814703 None:intergenic 30.0%
TGAAGCAAAAGAGTAAATGT+TGG - chr1_4:68814829-68814848 None:intergenic 30.0%
ACCTTCAATTCCTTTCATTT+GGG + chr1_4:68813926-68813945 Msa0180820:CDS 30.0%
!!! ATTGAGGCAATTTGTTTTAG+TGG - chr1_4:68814023-68814042 None:intergenic 30.0%
!!! TTTAACTGGTTCTGCTTTTT+TGG + chr1_4:68814307-68814326 Msa0180820:CDS 30.0%
!!! AAAGTCTGGTTTTCTTGAAA+GGG + chr1_4:68814355-68814374 Msa0180820:CDS 30.0%
! TAAGTTAAGTTCAAGTTTGG+TGG + chr1_4:68814394-68814413 Msa0180820:CDS 30.0%
ATTATACCTGTGATATGTCA+AGG + chr1_4:68814447-68814466 Msa0180820:CDS 30.0%
ATAATTAACTCTCCAAGTGT+TGG - chr1_4:68814479-68814498 None:intergenic 30.0%
AAGCAACTCAAATGAACAAA+TGG + chr1_4:68814528-68814547 Msa0180820:CDS 30.0%
AGCAACTCAAATGAACAAAT+GGG + chr1_4:68814529-68814548 Msa0180820:CDS 30.0%
AAAATGGAACAAGTTACCTT+TGG - chr1_4:68814560-68814579 None:intergenic 30.0%
! GACTTTGTATTTGGAATACT+TGG - chr1_4:68814684-68814703 None:intergenic 30.0%
TGAAGCAAAAGAGTAAATGT+TGG - chr1_4:68814829-68814848 None:intergenic 30.0%
CAAATGAAAGGAATTGAAGG+TGG - chr1_4:68813927-68813946 None:intergenic 35.0%
CACCTTCAATTCCTTTCATT+TGG + chr1_4:68813925-68813944 Msa0180820:CDS 35.0%
TCCCAAATGAAAGGAATTGA+AGG - chr1_4:68813930-68813949 None:intergenic 35.0%
!!! GGTTTTGTTTCCCAAATGAA+AGG - chr1_4:68813939-68813958 None:intergenic 35.0%
TTCATTTGGGAAACAAAACC+AGG + chr1_4:68813939-68813958 Msa0180820:CDS 35.0%
! CAATCTTTTATAGGAATGCC+TGG - chr1_4:68813960-68813979 None:intergenic 35.0%
CAGGCATTCCTATAAAAGAT+TGG + chr1_4:68813958-68813977 Msa0180820:CDS 35.0%
!! ACTGGCTTCCAATCTTTTAT+AGG - chr1_4:68813969-68813988 None:intergenic 35.0%
TATAAAAGATTGGAAGCCAG+TGG + chr1_4:68813968-68813987 Msa0180820:CDS 35.0%
! GGTTTTTCTTCCCAAACAAA+GGG - chr1_4:68814047-68814066 None:intergenic 35.0%
! AGGTTTTTCTTCCCAAACAA+AGG - chr1_4:68814048-68814067 None:intergenic 35.0%
TTTGTTTGGGAAGAAAAACC+TGG + chr1_4:68814047-68814066 Msa0180820:CDS 35.0%
CATCAACATGTGAGAAACTA+GGG - chr1_4:68814082-68814101 None:intergenic 35.0%
TCATCAACATGTGAGAAACT+AGG - chr1_4:68814083-68814102 None:intergenic 35.0%
AGAGAGTTTGCAAGTAAAGA+AGG - chr1_4:68814176-68814195 None:intergenic 35.0%
AGTATAAGCAGCTATGAAAC+TGG + chr1_4:68814275-68814294 Msa0180820:CDS 35.0%
CTTTCAAGAAAACCAGACTT+TGG - chr1_4:68814356-68814375 None:intergenic 35.0%
!!! CAAAGTCTGGTTTTCTTGAA+AGG + chr1_4:68814354-68814373 Msa0180820:CDS 35.0%
! GGTTTTCTTGAAAGGGATAT+TGG + chr1_4:68814362-68814381 Msa0180820:CDS 35.0%
! TTCAAGTTTGGTGGAACTAA+AGG + chr1_4:68814403-68814422 Msa0180820:CDS 35.0%
! TCAAGTTTGGTGGAACTAAA+GGG + chr1_4:68814404-68814423 Msa0180820:CDS 35.0%
TCGTAGTCTGACTTTGTATT+TGG - chr1_4:68814693-68814712 None:intergenic 35.0%
CAAATGAAAGGAATTGAAGG+TGG - chr1_4:68813927-68813946 None:intergenic 35.0%
CACCTTCAATTCCTTTCATT+TGG + chr1_4:68813925-68813944 Msa0180820:CDS 35.0%
TCCCAAATGAAAGGAATTGA+AGG - chr1_4:68813930-68813949 None:intergenic 35.0%
!!! GGTTTTGTTTCCCAAATGAA+AGG - chr1_4:68813939-68813958 None:intergenic 35.0%
TTCATTTGGGAAACAAAACC+AGG + chr1_4:68813939-68813958 Msa0180820:CDS 35.0%
! CAATCTTTTATAGGAATGCC+TGG - chr1_4:68813960-68813979 None:intergenic 35.0%
CAGGCATTCCTATAAAAGAT+TGG + chr1_4:68813958-68813977 Msa0180820:CDS 35.0%
!! ACTGGCTTCCAATCTTTTAT+AGG - chr1_4:68813969-68813988 None:intergenic 35.0%
TATAAAAGATTGGAAGCCAG+TGG + chr1_4:68813968-68813987 Msa0180820:CDS 35.0%
! GGTTTTTCTTCCCAAACAAA+GGG - chr1_4:68814047-68814066 None:intergenic 35.0%
! AGGTTTTTCTTCCCAAACAA+AGG - chr1_4:68814048-68814067 None:intergenic 35.0%
TTTGTTTGGGAAGAAAAACC+TGG + chr1_4:68814047-68814066 Msa0180820:CDS 35.0%
CATCAACATGTGAGAAACTA+GGG - chr1_4:68814082-68814101 None:intergenic 35.0%
TCATCAACATGTGAGAAACT+AGG - chr1_4:68814083-68814102 None:intergenic 35.0%
AGAGAGTTTGCAAGTAAAGA+AGG - chr1_4:68814176-68814195 None:intergenic 35.0%
AGTATAAGCAGCTATGAAAC+TGG + chr1_4:68814275-68814294 Msa0180820:CDS 35.0%
CTTTCAAGAAAACCAGACTT+TGG - chr1_4:68814356-68814375 None:intergenic 35.0%
!!! CAAAGTCTGGTTTTCTTGAA+AGG + chr1_4:68814354-68814373 Msa0180820:CDS 35.0%
! GGTTTTCTTGAAAGGGATAT+TGG + chr1_4:68814362-68814381 Msa0180820:CDS 35.0%
! TTCAAGTTTGGTGGAACTAA+AGG + chr1_4:68814403-68814422 Msa0180820:CDS 35.0%
! TCAAGTTTGGTGGAACTAAA+GGG + chr1_4:68814404-68814423 Msa0180820:CDS 35.0%
TCGTAGTCTGACTTTGTATT+TGG - chr1_4:68814693-68814712 None:intergenic 35.0%
TGACAAAATGATGAGTCCAC+TGG - chr1_4:68813987-68814006 None:intergenic 40.0%
TTGCCTCAATTCCCTTTGTT+TGG + chr1_4:68814033-68814052 Msa0180820:CDS 40.0%
! TGCCTCAATTCCCTTTGTTT+GGG + chr1_4:68814034-68814053 Msa0180820:CDS 40.0%
TTCCCAAACAAAGGGAATTG+AGG - chr1_4:68814039-68814058 None:intergenic 40.0%
AACATGTGAGAAACTAGGGA+GGG - chr1_4:68814078-68814097 None:intergenic 40.0%
GAGTGAAACCATAACTAGCT+TGG + chr1_4:68814103-68814122 Msa0180820:CDS 40.0%
TTCTAGGTCCAAGCTAGTTA+TGG - chr1_4:68814114-68814133 None:intergenic 40.0%
TAAGCAGCTATGAAACTGGA+AGG + chr1_4:68814279-68814298 Msa0180820:CDS 40.0%
ACTGGAAGGTCAAGTTTAAC+TGG + chr1_4:68814293-68814312 Msa0180820:CDS 40.0%
TCAAGAAAACCAGACTTTGG+TGG - chr1_4:68814353-68814372 None:intergenic 40.0%
TTGCTTCCTTGACATATCAC+AGG - chr1_4:68814456-68814475 None:intergenic 40.0%
ATGGAACAAGTTACCTTTGG+TGG - chr1_4:68814557-68814576 None:intergenic 40.0%
ACAAGCAGCAGTATCATTGA+AGG + chr1_4:68814899-68814918 Msa0180820:CDS 40.0%
CAAGCAGCAGTATCATTGAA+GGG + chr1_4:68814900-68814919 Msa0180820:CDS 40.0%
!! TGAAGAGAAAGTACTACCCT+AGG + chr1_4:68814927-68814946 Msa0180820:CDS 40.0%
TGACAAAATGATGAGTCCAC+TGG - chr1_4:68813987-68814006 None:intergenic 40.0%
TTGCCTCAATTCCCTTTGTT+TGG + chr1_4:68814033-68814052 Msa0180820:CDS 40.0%
! TGCCTCAATTCCCTTTGTTT+GGG + chr1_4:68814034-68814053 Msa0180820:CDS 40.0%
TTCCCAAACAAAGGGAATTG+AGG - chr1_4:68814039-68814058 None:intergenic 40.0%
AACATGTGAGAAACTAGGGA+GGG - chr1_4:68814078-68814097 None:intergenic 40.0%
GAGTGAAACCATAACTAGCT+TGG + chr1_4:68814103-68814122 Msa0180820:CDS 40.0%
TTCTAGGTCCAAGCTAGTTA+TGG - chr1_4:68814114-68814133 None:intergenic 40.0%
TAAGCAGCTATGAAACTGGA+AGG + chr1_4:68814279-68814298 Msa0180820:CDS 40.0%
ACTGGAAGGTCAAGTTTAAC+TGG + chr1_4:68814293-68814312 Msa0180820:CDS 40.0%
TCAAGAAAACCAGACTTTGG+TGG - chr1_4:68814353-68814372 None:intergenic 40.0%
TTGCTTCCTTGACATATCAC+AGG - chr1_4:68814456-68814475 None:intergenic 40.0%
ATGGAACAAGTTACCTTTGG+TGG - chr1_4:68814557-68814576 None:intergenic 40.0%
ACAAGCAGCAGTATCATTGA+AGG + chr1_4:68814899-68814918 Msa0180820:CDS 40.0%
CAAGCAGCAGTATCATTGAA+GGG + chr1_4:68814900-68814919 Msa0180820:CDS 40.0%
!! TGAAGAGAAAGTACTACCCT+AGG + chr1_4:68814927-68814946 Msa0180820:CDS 40.0%
ACATGTGAGAAACTAGGGAG+GGG - chr1_4:68814077-68814096 None:intergenic 45.0%
CAACATGTGAGAAACTAGGG+AGG - chr1_4:68814079-68814098 None:intergenic 45.0%
CCAGACTTTGGTGGAAACAA+AGG - chr1_4:68814344-68814363 None:intergenic 45.0%
! CCTTTGTTTCCACCAAAGTC+TGG + chr1_4:68814341-68814360 Msa0180820:CDS 45.0%
TCAAGGAAGCAACCAACACT+TGG + chr1_4:68814464-68814483 Msa0180820:CDS 45.0%
GAACAAATGGGATCCACCAA+AGG + chr1_4:68814541-68814560 Msa0180820:CDS 45.0%
! ACCACGAGAAAGCAAGCTTT+TGG + chr1_4:68814860-68814879 Msa0180820:CDS 45.0%
! TCCAAAAGCTTGCTTTCTCG+TGG - chr1_4:68814864-68814883 None:intergenic 45.0%
ACATGTGAGAAACTAGGGAG+GGG - chr1_4:68814077-68814096 None:intergenic 45.0%
CAACATGTGAGAAACTAGGG+AGG - chr1_4:68814079-68814098 None:intergenic 45.0%
CCAGACTTTGGTGGAAACAA+AGG - chr1_4:68814344-68814363 None:intergenic 45.0%
! CCTTTGTTTCCACCAAAGTC+TGG + chr1_4:68814341-68814360 Msa0180820:CDS 45.0%
TCAAGGAAGCAACCAACACT+TGG + chr1_4:68814464-68814483 Msa0180820:CDS 45.0%
GAACAAATGGGATCCACCAA+AGG + chr1_4:68814541-68814560 Msa0180820:CDS 45.0%
! ACCACGAGAAAGCAAGCTTT+TGG + chr1_4:68814860-68814879 Msa0180820:CDS 45.0%
! TCCAAAAGCTTGCTTTCTCG+TGG - chr1_4:68814864-68814883 None:intergenic 45.0%
!! AAACTAGGGAGGGGTATTCC+AGG - chr1_4:68814068-68814087 None:intergenic 50.0%
!! TGGAGTTTGCTGTAGTGGCA+TGG - chr1_4:68814225-68814244 None:intergenic 50.0%
!! GAGGATGGAGTTTGCTGTAG+TGG - chr1_4:68814230-68814249 None:intergenic 50.0%
!! AAACTAGGGAGGGGTATTCC+AGG - chr1_4:68814068-68814087 None:intergenic 50.0%
!! TGGAGTTTGCTGTAGTGGCA+TGG - chr1_4:68814225-68814244 None:intergenic 50.0%
!! GAGGATGGAGTTTGCTGTAG+TGG - chr1_4:68814230-68814249 None:intergenic 50.0%
TCCATCCTCTCCAGCTTCGT+CGG + chr1_4:68814241-68814260 Msa0180820:CDS 55.0%
CTATCCATCTCCGACGAAGC+TGG - chr1_4:68814254-68814273 None:intergenic 55.0%
TCCATCCTCTCCAGCTTCGT+CGG + chr1_4:68814241-68814260 Msa0180820:CDS 55.0%
CTATCCATCTCCGACGAAGC+TGG - chr1_4:68814254-68814273 None:intergenic 55.0%
TCCGACGAAGCTGGAGAGGA+TGG - chr1_4:68814245-68814264 None:intergenic 60.0%
CATCTCCGACGAAGCTGGAG+AGG - chr1_4:68814249-68814268 None:intergenic 60.0%
CTCTCCAGCTTCGTCGGAGA+TGG + chr1_4:68814247-68814266 Msa0180820:CDS 60.0%
TCCGACGAAGCTGGAGAGGA+TGG - chr1_4:68814245-68814264 None:intergenic 60.0%
CATCTCCGACGAAGCTGGAG+AGG - chr1_4:68814249-68814268 None:intergenic 60.0%
CTCTCCAGCTTCGTCGGAGA+TGG + chr1_4:68814247-68814266 Msa0180820:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 68813888 68814964 68813888 ID=Msa0180820;Name=Msa0180820
chr1_4 mRNA 68813888 68814964 68813888 ID=Msa0180820-mRNA-1;Parent=Msa0180820;Name=Msa0180820-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|260
chr1_4 exon 68813888 68814562 68813888 ID=Msa0180820-mRNA-1:exon:22794;Parent=Msa0180820-mRNA-1
chr1_4 exon 68814857 68814964 68814857 ID=Msa0180820-mRNA-1:exon:22795;Parent=Msa0180820-mRNA-1
chr1_4 CDS 68813888 68814562 68813888 ID=Msa0180820-mRNA-1:cds;Parent=Msa0180820-mRNA-1
chr1_4 CDS 68814857 68814964 68814857 ID=Msa0180820-mRNA-1:cds;Parent=Msa0180820-mRNA-1
Gene Sequence

>Msa0180820

ATGAATGAAAAAGAAAGGAAGAAACATATTAGGGAACCACCTTCAATTCCTTTCATTTGGGAAACAAAACCAGGCATTCCTATAAAAGATTGGAAGCCAGTGGACTCATCATTTTGTCAATTACCAAAAACTCCACTAAAACAAATTGCCTCAATTCCCTTTGTTTGGGAAGAAAAACCTGGAATACCCCTCCCTAGTTTCTCACATGTTGATGAGAGTGAAACCATAACTAGCTTGGACCTAGAATCATTTAGTTTTGATACCAATGAATCATTTAACTCAGTTCCTTCTTTACTTGCAAACTCTCTTGTATCATCAACTAAACTCTCTACAGCCATGCCACTACAGCAAACTCCATCCTCTCCAGCTTCGTCGGAGATGGATAGTAGTATAAGCAGCTATGAAACTGGAAGGTCAAGTTTAACTGGTTCTGCTTTTTTGGAATGTCTATTTCCTTTGTTTCCACCAAAGTCTGGTTTTCTTGAAAGGGATATTGGTTACAATGATAAGTTAAGTTCAAGTTTGGTGGAACTAAAGGGAAATGATTTTGAGAATGAAGATTATACCTGTGATATGTCAAGGAAGCAACCAACACTTGGAGAGTTAATTATGATGAGCAGAAGAAGAAGCTGCATAAGAAAAGCAACTCAAATGAACAAATGGGATCCACCAAAGAAAACCACGAGAAAGCAAGCTTTTGGATGCTTCTCAGTTGTAACAAGCAGCAGTATCATTGAAGGGCTGTTGAAGAGAAAGTACTACCCTAGGCTGAAACTAGTCTAA

Protein sequence

>Msa0180820

MNEKERKKHIREPPSIPFIWETKPGIPIKDWKPVDSSFCQLPKTPLKQIASIPFVWEEKPGIPLPSFSHVDESETITSLDLESFSFDTNESFNSVPSLLANSLVSSTKLSTAMPLQQTPSSPASSEMDSSISSYETGRSSLTGSAFLECLFPLFPPKSGFLERDIGYNDKLSSSLVELKGNDFENEDYTCDMSRKQPTLGELIMMSRRRSCIRKATQMNKWDPPKKTTRKQAFGCFSVVTSSSIIEGLLKRKYYPRLKLV*