Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373310 | XP_003601793.2 | 97.647 | 595 | 14 | 0 | 1 | 595 | 1 | 595 | 0.0 | 1195 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373310 | sp|Q9C7G0|MA658_ARATH | 62.766 | 564 | 203 | 4 | 1 | 562 | 1 | 559 | 0.0 | 711 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373310 | G7JC01 | 97.647 | 595 | 14 | 0 | 1 | 595 | 1 | 595 | 0.0 | 1195 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0373310 | Msa0392380 | 0.805720 | 1.164830e-49 | -8.615850e-47 |
| Msa0373310 | Msa0421890 | 0.975939 | 6.994175e-141 | -8.615850e-47 |
| Msa0373310 | Msa0425170 | 0.807441 | 5.046098e-50 | -8.615850e-47 |
| Msa0373310 | Msa0440320 | 0.811536 | 6.665065e-51 | -8.615850e-47 |
| Msa0373310 | Msa0467770 | 0.947431 | 6.812526e-106 | -8.615850e-47 |
| Msa0373310 | Msa0487500 | 0.813857 | 2.069717e-51 | -8.615850e-47 |
| Msa0373310 | Msa0514170 | 0.950390 | 1.816844e-108 | -8.615850e-47 |
| Msa0373310 | Msa1078930 | 0.800873 | 1.175053e-48 | -8.615850e-47 |
| Msa0373310 | Msa1123930 | 0.802044 | 6.761675e-49 | -8.615850e-47 |
| Msa0373310 | Msa1426070 | 0.807309 | 5.382252e-50 | -8.615850e-47 |
| Msa0373310 | Msa1436420 | 0.801776 | 7.674857e-49 | -8.615850e-47 |
| Msa0242490 | Msa0373310 | 0.815671 | 8.203221e-52 | -8.615850e-47 |
| Msa0243600 | Msa0373310 | 0.826026 | 3.399667e-54 | -8.615850e-47 |
| Msa0280690 | Msa0373310 | 0.808358 | 3.220423e-50 | -8.615850e-47 |
| Msa0282220 | Msa0373310 | 0.800414 | 1.457444e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373310 | MtrunA17_Chr3g0122591 | 96.352 | 603 | 14 | 1 | 1 | 595 | 1 | 603 | 0.0 | 1188 |
| Msa0373310 | MtrunA17_Chr5g0444881 | 45.997 | 587 | 292 | 8 | 17 | 595 | 13 | 582 | 1.50e-164 | 481 |
| Msa0373310 | MtrunA17_Chr6g0476051 | 45.312 | 512 | 267 | 8 | 17 | 524 | 14 | 516 | 1.53e-139 | 422 |
| Msa0373310 | MtrunA17_Chr1g0164981 | 41.166 | 549 | 304 | 9 | 1 | 536 | 1 | 543 | 2.99e-131 | 397 |
| Msa0373310 | MtrunA17_Chr1g0188201 | 40.728 | 577 | 318 | 8 | 17 | 588 | 13 | 570 | 8.18e-131 | 400 |
| Msa0373310 | MtrunA17_Chr8g0354131 | 40.253 | 554 | 305 | 8 | 18 | 565 | 13 | 546 | 1.81e-125 | 381 |
| Msa0373310 | MtrunA17_Chr7g0245851 | 39.448 | 507 | 297 | 5 | 8 | 512 | 355 | 853 | 5.54e-107 | 345 |
| Msa0373310 | MtrunA17_Chr8g0345241 | 36.981 | 530 | 287 | 12 | 4 | 520 | 7 | 502 | 4.51e-87 | 279 |
| Msa0373310 | MtrunA17_Chr4g0039561 | 57.692 | 52 | 22 | 0 | 28 | 79 | 144 | 195 | 7.24e-14 | 70.9 |
| Msa0373310 | MtrunA17_Chr5g0410361 | 43.023 | 86 | 46 | 2 | 241 | 326 | 11 | 93 | 1.51e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373310 | AT1G27920.1 | 62.766 | 564 | 203 | 4 | 1 | 562 | 1 | 559 | 0.0 | 711 |
| Msa0373310 | AT1G27920.2 | 68.550 | 407 | 125 | 2 | 1 | 405 | 1 | 406 | 0.0 | 573 |
| Msa0373310 | AT4G26760.1 | 46.595 | 558 | 279 | 6 | 15 | 559 | 11 | 562 | 2.77e-160 | 471 |
| Msa0373310 | AT5G55230.3 | 48.333 | 540 | 265 | 6 | 12 | 544 | 8 | 540 | 8.34e-160 | 470 |
| Msa0373310 | AT5G55230.1 | 48.333 | 540 | 265 | 6 | 12 | 544 | 8 | 540 | 8.34e-160 | 470 |
| Msa0373310 | AT5G55230.2 | 45.870 | 569 | 265 | 7 | 12 | 544 | 8 | 569 | 3.12e-153 | 454 |
| Msa0373310 | AT2G01910.1 | 41.734 | 496 | 280 | 4 | 18 | 506 | 16 | 509 | 3.73e-134 | 405 |
| Msa0373310 | AT2G38720.1 | 43.625 | 502 | 273 | 5 | 23 | 522 | 12 | 505 | 2.11e-132 | 398 |
| Msa0373310 | AT1G14690.1 | 39.734 | 526 | 304 | 5 | 18 | 532 | 16 | 539 | 1.35e-129 | 393 |
| Msa0373310 | AT1G14690.2 | 39.734 | 526 | 304 | 5 | 18 | 532 | 16 | 539 | 1.35e-129 | 393 |
| Msa0373310 | AT5G51600.1 | 43.182 | 528 | 286 | 5 | 16 | 538 | 12 | 530 | 3.26e-126 | 387 |
| Msa0373310 | AT2G01910.2 | 41.064 | 470 | 268 | 4 | 44 | 506 | 1 | 468 | 1.03e-123 | 377 |
| Msa0373310 | AT3G60840.1 | 37.643 | 526 | 312 | 7 | 16 | 538 | 12 | 524 | 2.61e-109 | 343 |
| Msa0373310 | AT5G62250.2 | 38.068 | 528 | 314 | 7 | 12 | 530 | 2 | 525 | 5.33e-96 | 304 |
| Msa0373310 | AT5G62250.1 | 38.068 | 528 | 314 | 7 | 12 | 530 | 2 | 525 | 5.33e-96 | 304 |
Find 151 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCAAATTTAGATAATT+TGG | 0.060973 | 3_1:-72338777 | Msa0373310:intron |
| ATTCTTGACAAAGAAATTTA+AGG | 0.140374 | 3_1:+72334928 | None:intergenic |
| CGAGCATGAGTTAATCAATT+TGG | 0.157195 | 3_1:+72334802 | None:intergenic |
| CCAGTTCCTCCTGCTTCTTT+TGG | 0.184387 | 3_1:+72336978 | None:intergenic |
| CTTCCATTTAAGCTTCTATT+TGG | 0.209135 | 3_1:+72335162 | None:intergenic |
| ATCAAATCTTTGGAATCTTA+TGG | 0.243314 | 3_1:-72337241 | Msa0373310:CDS |
| TAGATAATTTGGGATGAAAT+TGG | 0.251538 | 3_1:-72338766 | Msa0373310:CDS |
| GCATTCTACTGACCATTATA+CGG | 0.261311 | 3_1:+72336477 | None:intergenic |
| GCAAAACACTATCAAATCTT+TGG | 0.266126 | 3_1:-72337251 | Msa0373310:CDS |
| TCCTCCAGTATTTCCATTAG+AGG | 0.271034 | 3_1:+72335485 | None:intergenic |
| TTGCCTGCAGTTCCTGTAAT+AGG | 0.273628 | 3_1:+72338891 | None:intergenic |
| CTTCCAAATAGAAGCTTAAA+TGG | 0.280847 | 3_1:-72335165 | Msa0373310:CDS |
| TCTATCATGTCCACACATTC+TGG | 0.292323 | 3_1:-72334961 | Msa0373310:CDS |
| AAAGAAATTTAAGGAGAAAA+TGG | 0.296087 | 3_1:+72334937 | None:intergenic |
| AAGAGTGCCTTGAGGTTTAC+AGG | 0.300573 | 3_1:-72338699 | Msa0373310:CDS |
| ATCTCTAGAGTTAGACTTCC+TGG | 0.307135 | 3_1:+72337141 | None:intergenic |
| GATTTGCAGCTTCACCATTT+AGG | 0.323978 | 3_1:-72337273 | Msa0373310:intron |
| CTTTCCTCAAGCGCATTTCC+CGG | 0.325728 | 3_1:+72338125 | None:intergenic |
| CTCTTGCGGATTCCTATTAC+AGG | 0.331927 | 3_1:-72338903 | Msa0373310:CDS |
| TCAAGGTATATCCTTCATTA+AGG | 0.332212 | 3_1:-72335058 | Msa0373310:CDS |
| GGAAAAGGTTCTGCTGGATA+TGG | 0.335210 | 3_1:-72338725 | Msa0373310:CDS |
| TTCTCAAATTTAGATAATTT+GGG | 0.339890 | 3_1:-72338776 | Msa0373310:intron |
| TCACTTGCACAGCTCTGAAT+TGG | 0.353675 | 3_1:+72338089 | None:intergenic |
| CCCAATGGGTATCCAACAAC+TGG | 0.354408 | 3_1:-72335106 | Msa0373310:CDS |
| GAATCCATCAACAAGCAAAA+TGG | 0.363080 | 3_1:+72334705 | None:intergenic |
| GAGCATGAGTTAATCAATTT+GGG | 0.364598 | 3_1:+72334803 | None:intergenic |
| ATCTATGTAGGTTCCTCTAA+TGG | 0.370668 | 3_1:-72335498 | Msa0373310:intron |
| ACACAGCTTGTCCACAATCT+TGG | 0.385265 | 3_1:-72337804 | Msa0373310:CDS |
| AGCTGAACGTGCCCGTATAA+TGG | 0.385407 | 3_1:-72336489 | Msa0373310:CDS |
| TTTGTATGTTCACAACAGTA+TGG | 0.401421 | 3_1:+72334869 | None:intergenic |
| CACTGAAGGGTACCATCAAA+TGG | 0.402116 | 3_1:-72338975 | Msa0373310:exon |
| CTTGGCGAACGATCTCTTCC+TGG | 0.402388 | 3_1:-72338586 | Msa0373310:CDS |
| CTCATTTACTGTAACGATTG+AGG | 0.405166 | 3_1:+72338018 | None:intergenic |
| GGCTCATTCCAGACACCAAT+TGG | 0.407854 | 3_1:-72338953 | Msa0373310:CDS |
| CCAAAAGAAGCAGGAGGAAC+TGG | 0.410765 | 3_1:-72336978 | Msa0373310:CDS |
| GGTTCCTCTAATGGAAATAC+TGG | 0.415098 | 3_1:-72335489 | Msa0373310:CDS |
| AGAATTTCTGCAGAAATTGC+AGG | 0.416093 | 3_1:-72338058 | Msa0373310:CDS |
| CACAGCTTGTCCACAATCTT+GGG | 0.424296 | 3_1:-72337803 | Msa0373310:CDS |
| TGTTGTTTGATCCCAGTTGT+TGG | 0.428436 | 3_1:+72335094 | None:intergenic |
| TTCGAGCAGGAAGGCTATAA+TGG | 0.429177 | 3_1:-72336715 | Msa0373310:CDS |
| GTAATGTAAGTGTAAGCTTT+GGG | 0.434845 | 3_1:+72339155 | None:intergenic |
| GGATCAAACAACATAAATTC+AGG | 0.435219 | 3_1:-72335084 | Msa0373310:CDS |
| TTCTCATTCCAATTGGTGTC+TGG | 0.435378 | 3_1:+72338945 | None:intergenic |
| GGTAATGTAAGTGTAAGCTT+TGG | 0.437291 | 3_1:+72339154 | None:intergenic |
| AAGCGCATTTCCCGGAGTGC+TGG | 0.442192 | 3_1:+72338133 | None:intergenic |
| TCAAGCTGGGGTGGAGTTGA+AGG | 0.444352 | 3_1:+72337759 | None:intergenic |
| TAAATTCACCTGCGTTTATG+AGG | 0.449706 | 3_1:+72336891 | None:intergenic |
| ATTTGGAAGGCGTCTACTGC+TGG | 0.453067 | 3_1:+72335179 | None:intergenic |
| TCATTTACTGTAACGATTGA+GGG | 0.455769 | 3_1:+72338019 | None:intergenic |
| AACATAAATTCAGGAAATCA+AGG | 0.473671 | 3_1:-72335075 | Msa0373310:CDS |
| TTCAATCACTCCAGCACTCC+GGG | 0.473685 | 3_1:-72338143 | Msa0373310:CDS |
| ATCCATGCTCATGAGGAGAT+TGG | 0.476554 | 3_1:+72336767 | None:intergenic |
| CCAGTTGTTGGATACCCATT+GGG | 0.477027 | 3_1:+72335106 | None:intergenic |
| AAGTGAAAGGGTACCCGTCC+AGG | 0.477643 | 3_1:+72338568 | None:intergenic |
| CTTCCTTCCATCCTTAATGA+AGG | 0.477715 | 3_1:+72335047 | None:intergenic |
| CCCAGTTGTTGGATACCCAT+TGG | 0.479704 | 3_1:+72335105 | None:intergenic |
| GTGGAGCTTCTCATTCCAAT+TGG | 0.480272 | 3_1:+72338938 | None:intergenic |
| AAGCAAAATCCAATACCAAA+TGG | 0.481519 | 3_1:-72339108 | Msa0373310:five_prime_UTR |
| TCCGCACAAATCATTCAAGC+TGG | 0.482056 | 3_1:+72337745 | None:intergenic |
| CATTTAAGCTTCTATTTGGA+AGG | 0.482390 | 3_1:+72335166 | None:intergenic |
| TAACATACTAAGGCAAGAAA+AGG | 0.486755 | 3_1:-72335459 | Msa0373310:CDS |
| ATTCTCCACACATGAACAAA+AGG | 0.488062 | 3_1:-72335131 | Msa0373310:CDS |
| AACTCTAGAGATTGTCCAGC+AGG | 0.488428 | 3_1:-72337130 | Msa0373310:intron |
| TGGAGGAATATAACATACTA+AGG | 0.491206 | 3_1:-72335469 | Msa0373310:CDS |
| AGCTAGTCTGCATCAGAAGT+TGG | 0.492163 | 3_1:-72338647 | Msa0373310:CDS |
| CCATGTTATCAATTTGCTGT+CGG | 0.492212 | 3_1:-72337187 | Msa0373310:CDS |
| GAGATCGTTCGCCAAGGGAC+AGG | 0.492757 | 3_1:+72338593 | None:intergenic |
| CCGTGATATTGAGTTTATGT+AGG | 0.502204 | 3_1:+72337696 | None:intergenic |
| TGCAGAAATTGCAGGAAACT+CGG | 0.505191 | 3_1:-72338050 | Msa0373310:CDS |
| AAAGACAAGGGTGGCAGAGG+TGG | 0.506369 | 3_1:+72339132 | None:intergenic |
| TCAGCAGAGGTATCAGATCC+AGG | 0.511058 | 3_1:-72337159 | Msa0373310:CDS |
| CGAGAGGGAAAAGGTTCTGC+TGG | 0.520433 | 3_1:-72338731 | Msa0373310:CDS |
| CCGACAGCAAATTGATAACA+TGG | 0.522933 | 3_1:+72337187 | None:intergenic |
| ACTCACCTACTCCTGTCCCT+TGG | 0.525401 | 3_1:-72338604 | Msa0373310:CDS |
| AGGCGTCTACTGCTGGTGCT+TGG | 0.527547 | 3_1:+72335186 | None:intergenic |
| AGACAAGTTCGAGAGGGAAA+AGG | 0.527902 | 3_1:-72338740 | Msa0373310:CDS |
| GGTATATCCTTCATTAAGGA+TGG | 0.530437 | 3_1:-72335054 | Msa0373310:CDS |
| GGAATCCTTTCCCAAGATTG+TGG | 0.535210 | 3_1:+72337793 | None:intergenic |
| CTAAGTTCAATCTCCACTGA+AGG | 0.536725 | 3_1:-72338989 | Msa0373310:five_prime_UTR |
| TCAGAAGTTGGCTGAAGCAG+AGG | 0.538192 | 3_1:-72338635 | Msa0373310:CDS |
| CCGCACAAATCATTCAAGCT+GGG | 0.539404 | 3_1:+72337746 | None:intergenic |
| TCTGGAATGAGCCCATTTGA+TGG | 0.540651 | 3_1:+72338963 | None:intergenic |
| ACTGAAGGGTACCATCAAAT+GGG | 0.548310 | 3_1:-72338974 | Msa0373310:exon |
| CACTCCGGGAAATGCGCTTG+AGG | 0.548570 | 3_1:-72338129 | Msa0373310:CDS |
| CAAAAGAAGAGGCTTCGAGC+AGG | 0.554081 | 3_1:-72336728 | Msa0373310:CDS |
| CGAACGATCTCTTCCTGGAC+GGG | 0.556832 | 3_1:-72338581 | Msa0373310:intron |
| ATTCAATCACTCCAGCACTC+CGG | 0.557459 | 3_1:-72338144 | Msa0373310:CDS |
| TTCCAATCTCCTCATGAGCA+TGG | 0.558030 | 3_1:-72336769 | Msa0373310:CDS |
| TTGTTCATTTCTGTCCGTGA+AGG | 0.559381 | 3_1:+72336923 | None:intergenic |
| CATTTGATGGTACCCTTCAG+TGG | 0.559511 | 3_1:+72338976 | None:intergenic |
| ATTCCTATTACAGGAACTGC+AGG | 0.560645 | 3_1:-72338894 | Msa0373310:intron |
| GGAGCTATTCCAAAAGAAGC+AGG | 0.561788 | 3_1:-72336987 | Msa0373310:CDS |
| TTAAAAGACAAGGGTGGCAG+AGG | 0.562239 | 3_1:+72339129 | None:intergenic |
| CTTGTCCACAATCTTGGGAA+AGG | 0.564387 | 3_1:-72337798 | Msa0373310:CDS |
| GTCTTGCATATGAAAAGTAA+AGG | 0.564831 | 3_1:+72334993 | None:intergenic |
| GAATGAAAGACTACAGCAAG+TGG | 0.564847 | 3_1:-72337846 | Msa0373310:CDS |
| AAAGATTGTCTATCACGGTA+AGG | 0.567215 | 3_1:+72337213 | None:intergenic |
| ATGAACAAAAGGCTCCCAAT+GGG | 0.571218 | 3_1:-72335120 | Msa0373310:CDS |
| CATGAACAAAAGGCTCCCAA+TGG | 0.571401 | 3_1:-72335121 | Msa0373310:CDS |
| ATCTGATACCTCTGCTGATG+AGG | 0.572829 | 3_1:+72337164 | None:intergenic |
| CATTCTACTGACCATTATAC+GGG | 0.573420 | 3_1:+72336478 | None:intergenic |
| ATTATCAGAATGAGTTGCAA+AGG | 0.573617 | 3_1:-72337967 | Msa0373310:CDS |
| AAATGATGTGAAAGAAGTGT+TGG | 0.574676 | 3_1:+72339062 | None:intergenic |
| GGAGGATAAGAAAAGACAGC+AGG | 0.576273 | 3_1:-72335435 | Msa0373310:intron |
| GCAGTCATGGGAAAAGAAGA+AGG | 0.577231 | 3_1:-72335256 | Msa0373310:intron |
| CACACGTGGAGATTCCTTCA+CGG | 0.578207 | 3_1:-72336937 | Msa0373310:CDS |
| GTTCGCCAAGGGACAGGAGT+AGG | 0.579437 | 3_1:+72338599 | None:intergenic |
| AGGATGGAAGGAAGATACAA+AGG | 0.580566 | 3_1:-72335038 | Msa0373310:CDS |
| CATACTAAGGCAAGAAAAGG+AGG | 0.580847 | 3_1:-72335456 | Msa0373310:CDS |
| TATCCTTCATTAAGGATGGA+AGG | 0.581539 | 3_1:-72335050 | Msa0373310:CDS |
| ATAATGGTCAGTAGAATGCC+AGG | 0.582209 | 3_1:-72336473 | Msa0373310:intron |
| GCGAACGATCTCTTCCTGGA+CGG | 0.585459 | 3_1:-72338582 | Msa0373310:CDS |
| AAAACAAAATCGGCTGGACA+AGG | 0.586347 | 3_1:-72337654 | Msa0373310:intron |
| TGCATATGAAAAGTAAAGGT+AGG | 0.587797 | 3_1:+72334997 | None:intergenic |
| AAGACAAGGGTGGCAGAGGT+GGG | 0.593428 | 3_1:+72339133 | None:intergenic |
| TCCTCTAATGGAAATACTGG+AGG | 0.594082 | 3_1:-72335486 | Msa0373310:CDS |
| CAGGAAGAGATCGTTCGCCA+AGG | 0.594511 | 3_1:+72338587 | None:intergenic |
| GAAAGAAGTGTTGGTGTCAG+TGG | 0.596764 | 3_1:+72339071 | None:intergenic |
| GATATCAAGAGCAAAAGAAG+AGG | 0.598084 | 3_1:-72336739 | Msa0373310:CDS |
| AGAAAATGGTCCAGAATGTG+TGG | 0.598316 | 3_1:+72334951 | None:intergenic |
| TAGCACGCGATGAGGAGCGC+TGG | 0.599164 | 3_1:-72336671 | Msa0373310:CDS |
| TAAGTTCAATCTCCACTGAA+GGG | 0.607846 | 3_1:-72338988 | Msa0373310:five_prime_UTR |
| CTGTAATAGGAATCCGCAAG+AGG | 0.611580 | 3_1:+72338904 | None:intergenic |
| ATTGAACTTAGATAATGCTA+AGG | 0.612112 | 3_1:+72339001 | None:intergenic |
| AGAAGAGGCTTCGAGCAGGA+AGG | 0.616810 | 3_1:-72336724 | Msa0373310:CDS |
| AGGAAGAGATCGTTCGCCAA+GGG | 0.618807 | 3_1:+72338588 | None:intergenic |
| GCAAAGGCTGTACAATGAGA+AGG | 0.620234 | 3_1:-72337951 | Msa0373310:intron |
| CGACAGCAAATTGATAACAT+GGG | 0.621693 | 3_1:+72337188 | None:intergenic |
| AGAAGTGTTGGTGTCAGTGG+AGG | 0.621803 | 3_1:+72339074 | None:intergenic |
| CCAATGGGTATCCAACAACT+GGG | 0.627456 | 3_1:-72335105 | Msa0373310:CDS |
| CGCACAAATCATTCAAGCTG+GGG | 0.628853 | 3_1:+72337747 | None:intergenic |
| ACTAAGGCAAGAAAAGGAGG+AGG | 0.629609 | 3_1:-72335453 | Msa0373310:CDS |
| ACAAATCATTCAAGCTGGGG+TGG | 0.629680 | 3_1:+72337750 | None:intergenic |
| TGCTCATGAGGAGATTGGAA+TGG | 0.629793 | 3_1:+72336772 | None:intergenic |
| AATCGATACTCAGTCAGTAG+AGG | 0.634619 | 3_1:-72336533 | Msa0373310:CDS |
| TGGAGAAGACAAGTTCGAGA+GGG | 0.635498 | 3_1:-72338746 | Msa0373310:CDS |
| CCTACATAAACTCAATATCA+CGG | 0.648283 | 3_1:-72337696 | Msa0373310:CDS |
| CCCAGCTTGAATGATTTGTG+CGG | 0.650581 | 3_1:-72337746 | Msa0373310:CDS |
| ATAATTAGCCTCATAAACGC+AGG | 0.650670 | 3_1:-72336899 | Msa0373310:intron |
| GAGTTGAAGGATGATTGAAG+AGG | 0.652754 | 3_1:+72337772 | None:intergenic |
| ACATTGCTAGAAACCTCTTG+CGG | 0.655487 | 3_1:-72338917 | Msa0373310:CDS |
| TTGGAGAAGACAAGTTCGAG+AGG | 0.661670 | 3_1:-72338747 | Msa0373310:CDS |
| TCTGTTCATCCATGCTCATG+AGG | 0.663751 | 3_1:+72336760 | None:intergenic |
| GCAAGAGGTTTCTAGCAATG+TGG | 0.670973 | 3_1:+72338919 | None:intergenic |
| GCTGTCGGCCTCATCAGCAG+AGG | 0.684776 | 3_1:-72337172 | Msa0373310:CDS |
| GCTATTCCAAAAGAAGCAGG+AGG | 0.686349 | 3_1:-72336984 | Msa0373310:CDS |
| GTGGATGTTAGCACGCGATG+AGG | 0.690361 | 3_1:-72336679 | Msa0373310:CDS |
| CTGGCTAGAAGAATACAGCA+TGG | 0.700880 | 3_1:-72336652 | Msa0373310:intron |
| TATGGAGCAAGAGTGCCTTG+AGG | 0.711477 | 3_1:-72338707 | Msa0373310:CDS |
| GATATGCAAGAAATCACACG+TGG | 0.775049 | 3_1:-72336951 | Msa0373310:CDS |
| ACATAAACTCAATATCACGG+TGG | 0.787284 | 3_1:-72337693 | Msa0373310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTATTAGTACTTTTATT+TGG | - | chr3_1:72335447-72335466 | Msa0373310:CDS | 10.0% |
| !!! | AATTATTAGTACTTTTATTT+GGG | - | chr3_1:72335448-72335467 | Msa0373310:CDS | 10.0% |
| !!! | ATACATATTCATTTTTAAAA+TGG | + | chr3_1:72337036-72337055 | None:intergenic | 10.0% |
| !! | ATATATGTATAAATATATAG+GGG | + | chr3_1:72337737-72337756 | None:intergenic | 10.0% |
| !! | CAATATATGTATAAATATAT+AGG | + | chr3_1:72337739-72337758 | None:intergenic | 10.0% |
| !! | TTATACATATATTGTTATAA+AGG | - | chr3_1:72337745-72337764 | Msa0373310:CDS | 10.0% |
| !!! | TTAAATTTTTTTGTTATCTT+GGG | + | chr3_1:72338198-72338217 | None:intergenic | 10.0% |
| !! | TTTCTCAAATTTAGATAATT+TGG | - | chr3_1:72335109-72335128 | Msa0373310:CDS | 15.0% |
| !! | TTCTCAAATTTAGATAATTT+GGG | - | chr3_1:72335110-72335129 | Msa0373310:CDS | 15.0% |
| !!! | ATTATTAGTACTTTTATTTG+GGG | - | chr3_1:72335449-72335468 | Msa0373310:CDS | 15.0% |
| !! | TTTATGAAGAAAAACAAAAT+CGG | - | chr3_1:72336222-72336241 | Msa0373310:intron | 15.0% |
| !!! | ATATATGTAAGTCAATTTTT+AGG | + | chr3_1:72337079-72337098 | None:intergenic | 15.0% |
| !!! | AATTGACTTACATATATAAA+AGG | - | chr3_1:72337082-72337101 | Msa0373310:intron | 15.0% |
| !!! | ATTGACTTACATATATAAAA+GGG | - | chr3_1:72337083-72337102 | Msa0373310:intron | 15.0% |
| !!! | CTTAAATTTTTTTGTTATCT+TGG | + | chr3_1:72338199-72338218 | None:intergenic | 15.0% |
| !! | TGATGTAAAAATATTGAAAA+CGG | + | chr3_1:72338248-72338267 | None:intergenic | 15.0% |
| !!! | TTCAATATTTTTACATCAAA+TGG | - | chr3_1:72338250-72338269 | Msa0373310:intron | 15.0% |
| !!! | TGAAATTTTTAATGATGAAG+AGG | + | chr3_1:72334863-72334882 | None:intergenic | 20.0% |
| !!! | ATACTTTGAAAAATAAGACA+TGG | + | chr3_1:72335485-72335504 | None:intergenic | 20.0% |
| !!! | TTTTCATCAAAATAACATTC+TGG | - | chr3_1:72336417-72336436 | Msa0373310:intron | 20.0% |
| !! | TTGACTTACATATATAAAAG+GGG | - | chr3_1:72337084-72337103 | Msa0373310:intron | 20.0% |
| !! | AAGATCAAAACATTATACTT+TGG | - | chr3_1:72337446-72337465 | Msa0373310:intron | 20.0% |
| !! | CTAGAAAATATGTACTTAAA+AGG | - | chr3_1:72337646-72337665 | Msa0373310:intron | 20.0% |
| !! | AGTCTATATAATTCTTCAAA+GGG | - | chr3_1:72337681-72337700 | Msa0373310:CDS | 20.0% |
| !!! | TTATTGACTTAATAAAAGCA+TGG | + | chr3_1:72338351-72338370 | None:intergenic | 20.0% |
| !!! | CAGTTTTAAAATATCCTTAA+TGG | - | chr3_1:72338572-72338591 | Msa0373310:intron | 20.0% |
| !! | TAAGAATAAAGATACCATTA+AGG | + | chr3_1:72338589-72338608 | None:intergenic | 20.0% |
| !! | AAAGAAATTTAAGGAGAAAA+TGG | + | chr3_1:72338952-72338971 | None:intergenic | 20.0% |
| !! | ATTCTTGACAAAGAAATTTA+AGG | + | chr3_1:72338961-72338980 | None:intergenic | 20.0% |
| ! | ATTGAACTTAGATAATGCTA+AGG | + | chr3_1:72334888-72334907 | None:intergenic | 25.0% |
| ! | AACATGAGTAGATTATCTTA+TGG | + | chr3_1:72335079-72335098 | None:intergenic | 25.0% |
| !! | TAGATAATTTGGGATGAAAT+TGG | - | chr3_1:72335120-72335139 | Msa0373310:CDS | 25.0% |
| ! | GAAAAACATCAATTTCTGTT+AGG | + | chr3_1:72335963-72335982 | None:intergenic | 25.0% |
| ! | GTAACAAAAAATATAAGCGA+CGG | - | chr3_1:72336164-72336183 | Msa0373310:intron | 25.0% |
| ! | TATAAATTTCACTACACGAA+AGG | - | chr3_1:72336449-72336468 | Msa0373310:intron | 25.0% |
| !!! | ATCAAATCTTTGGAATCTTA+TGG | - | chr3_1:72336645-72336664 | Msa0373310:intron | 25.0% |
| ! | TTGATCTTATCATATATACC+TGG | + | chr3_1:72337434-72337453 | None:intergenic | 25.0% |
| ! | TAGTAAAAATGACTAGTAGT+TGG | - | chr3_1:72337538-72337557 | Msa0373310:intron | 25.0% |
| ! | AGTAAAAATGACTAGTAGTT+GGG | - | chr3_1:72337539-72337558 | Msa0373310:intron | 25.0% |
| !! | TAAAGTTTTCTTGTATGATC+AGG | - | chr3_1:72337575-72337594 | Msa0373310:intron | 25.0% |
| ! | CAGTCTATATAATTCTTCAA+AGG | - | chr3_1:72337680-72337699 | Msa0373310:CDS | 25.0% |
| !! | CATTAGTGTTTTGTATACTA+CGG | + | chr3_1:72337803-72337822 | None:intergenic | 25.0% |
| !! | GTTTTGTCTTCTTTTATATG+CGG | + | chr3_1:72337868-72337887 | None:intergenic | 25.0% |
| ! | TAAAAGAAGACAAAACTTGA+AGG | - | chr3_1:72337872-72337891 | Msa0373310:intron | 25.0% |
| !!! | TAACATTACTTGTTTTACAG+AGG | + | chr3_1:72338116-72338135 | None:intergenic | 25.0% |
| !! | TATTCCTTTAAAAACCATAC+GGG | + | chr3_1:72338148-72338167 | None:intergenic | 25.0% |
| !! | GTATTCCTTTAAAAACCATA+CGG | + | chr3_1:72338149-72338168 | None:intergenic | 25.0% |
| ! | AACATAAATTCAGGAAATCA+AGG | - | chr3_1:72338811-72338830 | Msa0373310:intron | 25.0% |
| ! | CAAAAAACAAAACTAGAGTT+TGG | + | chr3_1:72339052-72339071 | None:intergenic | 25.0% |
| GTAATGTAAGTGTAAGCTTT+GGG | + | chr3_1:72334734-72334753 | None:intergenic | 30.0% | |
| ! | GGATTTTGCTTAAAAGACAA+GGG | + | chr3_1:72334769-72334788 | None:intergenic | 30.0% |
| ! | TGGATTTTGCTTAAAAGACA+AGG | + | chr3_1:72334770-72334789 | None:intergenic | 30.0% |
| AAGCAAAATCCAATACCAAA+TGG | - | chr3_1:72334778-72334797 | Msa0373310:three_prime_UTR | 30.0% | |
| !! | GTATTTTTGCCATTTGGTAT+TGG | + | chr3_1:72334790-72334809 | None:intergenic | 30.0% |
| ! | AAATGATGTGAAAGAAGTGT+TGG | + | chr3_1:72334827-72334846 | None:intergenic | 30.0% |
| !! | CTATTGCTTGTTATTATTCC+TGG | + | chr3_1:72335383-72335402 | None:intergenic | 30.0% |
| AGTATAAAACAGATAAGTCG+AGG | - | chr3_1:72335550-72335569 | Msa0373310:intron | 30.0% | |
| TCATTTACTGTAACGATTGA+GGG | + | chr3_1:72335870-72335889 | None:intergenic | 30.0% | |
| ATTATCAGAATGAGTTGCAA+AGG | - | chr3_1:72335919-72335938 | Msa0373310:intron | 30.0% | |
| CCTACATAAACTCAATATCA+CGG | - | chr3_1:72336190-72336209 | Msa0373310:intron | 30.0% | |
| ACTAGATTACTCCTTATGAA+GGG | + | chr3_1:72336337-72336356 | None:intergenic | 30.0% | |
| TACTAGATTACTCCTTATGA+AGG | + | chr3_1:72336338-72336357 | None:intergenic | 30.0% | |
| !!! | CAGATGTTTTTAAGTTCCTT+TGG | + | chr3_1:72336362-72336381 | None:intergenic | 30.0% |
| TGTATCACTGTCATAAGAAT+TGG | + | chr3_1:72336391-72336410 | None:intergenic | 30.0% | |
| !!! | TTGATAGTGTTTTGCCTAAA+TGG | + | chr3_1:72336630-72336649 | None:intergenic | 30.0% |
| GCAAAACACTATCAAATCTT+TGG | - | chr3_1:72336635-72336654 | Msa0373310:intron | 30.0% | |
| ! | TTCAGTCTTGTAAAAAGTTG+AGG | + | chr3_1:72336835-72336854 | None:intergenic | 30.0% |
| !! | ATGTAAGTCAATTTTTAGGC+TGG | + | chr3_1:72337075-72337094 | None:intergenic | 30.0% |
| TAATGGAAAAAGTTGAGAAG+TGG | - | chr3_1:72337188-72337207 | Msa0373310:CDS | 30.0% | |
| CGTAGTATACAAAACACTAA+TGG | - | chr3_1:72337801-72337820 | Msa0373310:CDS | 30.0% | |
| ! | ACTAATGGACCAAAAATTCA+CGG | - | chr3_1:72337816-72337835 | Msa0373310:CDS | 30.0% |
| ATGCAAAATGTTTCTTACAG+TGG | + | chr3_1:72338033-72338052 | None:intergenic | 30.0% | |
| GTATCATAAGATATGCTTCT+GGG | + | chr3_1:72338226-72338245 | None:intergenic | 30.0% | |
| ! | ATGATCTGATGTGTATTTTC+TGG | - | chr3_1:72338304-72338323 | Msa0373310:intron | 30.0% |
| !! | AACCTACATAGATGTCATTT+TGG | + | chr3_1:72338381-72338400 | None:intergenic | 30.0% |
| TGGAGGAATATAACATACTA+AGG | - | chr3_1:72338417-72338436 | Msa0373310:intron | 30.0% | |
| TAACATACTAAGGCAAGAAA+AGG | - | chr3_1:72338427-72338446 | Msa0373310:intron | 30.0% | |
| TCTTACTTCCTCTTTATGTT+TGG | - | chr3_1:72338604-72338623 | Msa0373310:CDS | 30.0% | |
| CATTTAAGCTTCTATTTGGA+AGG | + | chr3_1:72338723-72338742 | None:intergenic | 30.0% | |
| CTTCCAAATAGAAGCTTAAA+TGG | - | chr3_1:72338721-72338740 | Msa0373310:CDS | 30.0% | |
| CTTCCATTTAAGCTTCTATT+TGG | + | chr3_1:72338727-72338746 | None:intergenic | 30.0% | |
| GGATCAAACAACATAAATTC+AGG | - | chr3_1:72338802-72338821 | Msa0373310:intron | 30.0% | |
| TCAAGGTATATCCTTCATTA+AGG | - | chr3_1:72338828-72338847 | Msa0373310:intron | 30.0% | |
| TGCATATGAAAAGTAAAGGT+AGG | + | chr3_1:72338892-72338911 | None:intergenic | 30.0% | |
| GTCTTGCATATGAAAAGTAA+AGG | + | chr3_1:72338896-72338915 | None:intergenic | 30.0% | |
| TTTGTATGTTCACAACAGTA+TGG | + | chr3_1:72339020-72339039 | None:intergenic | 30.0% | |
| GAGCATGAGTTAATCAATTT+GGG | + | chr3_1:72339086-72339105 | None:intergenic | 30.0% | |
| GGTAATGTAAGTGTAAGCTT+TGG | + | chr3_1:72334735-72334754 | None:intergenic | 35.0% | |
| ! | TTTTGCTTAAAAGACAAGGG+TGG | + | chr3_1:72334766-72334785 | None:intergenic | 35.0% |
| !! | GAGGTAGTATTTTTGCCATT+TGG | + | chr3_1:72334796-72334815 | None:intergenic | 35.0% |
| TAAGTTCAATCTCCACTGAA+GGG | - | chr3_1:72334898-72334917 | Msa0373310:three_prime_UTR | 35.0% | |
| !!! | CTTTTTTCCTGTAAACCTCA+AGG | + | chr3_1:72335197-72335216 | None:intergenic | 35.0% |
| TATCGAGTACTAACTGGATA+TGG | + | chr3_1:72335346-72335365 | None:intergenic | 35.0% | |
| GTTTACTATCGAGTACTAAC+TGG | + | chr3_1:72335352-72335371 | None:intergenic | 35.0% | |
| TAATGTGTTAGCTGTGAGAA+AGG | - | chr3_1:72335526-72335545 | Msa0373310:intron | 35.0% | |
| TAACTGTACAGCCAGAAAAA+AGG | - | chr3_1:72335694-72335713 | Msa0373310:intron | 35.0% | |
| AGAATTTCTGCAGAAATTGC+AGG | - | chr3_1:72335828-72335847 | Msa0373310:intron | 35.0% | |
| CTCATTTACTGTAACGATTG+AGG | + | chr3_1:72335871-72335890 | None:intergenic | 35.0% | |
| TCTGTCACTAAAAAAACTCG+AGG | - | chr3_1:72335896-72335915 | Msa0373310:intron | 35.0% | |
| GAAGAATACTAACCCCTTAA+TGG | + | chr3_1:72335992-72336011 | None:intergenic | 35.0% | |
| CCGTGATATTGAGTTTATGT+AGG | + | chr3_1:72336193-72336212 | None:intergenic | 35.0% | |
| ACATAAACTCAATATCACGG+TGG | - | chr3_1:72336193-72336212 | Msa0373310:intron | 35.0% | |
| TGAAGAAAAACAAAATCGGC+TGG | - | chr3_1:72336226-72336245 | Msa0373310:intron | 35.0% | |
| CTAGATTACTCCTTATGAAG+GGG | + | chr3_1:72336336-72336355 | None:intergenic | 35.0% | |
| ATCACTGTCATAAGAATTGG+AGG | + | chr3_1:72336388-72336407 | None:intergenic | 35.0% | |
| TGCTTATTTAGTCTCGTGAT+AGG | + | chr3_1:72336515-72336534 | None:intergenic | 35.0% | |
| TATCACGAGACTAAATAAGC+AGG | - | chr3_1:72336514-72336533 | Msa0373310:CDS | 35.0% | |
| ATCACGAGACTAAATAAGCA+GGG | - | chr3_1:72336515-72336534 | Msa0373310:CDS | 35.0% | |
| ACACAGTACTTGAAGCTTAA+AGG | + | chr3_1:72336541-72336560 | None:intergenic | 35.0% | |
| AAAGATTGTCTATCACGGTA+AGG | + | chr3_1:72336676-72336695 | None:intergenic | 35.0% | |
| GGGAAAAAGATTGTCTATCA+CGG | + | chr3_1:72336681-72336700 | None:intergenic | 35.0% | |
| ! | CGACAGCAAATTGATAACAT+GGG | + | chr3_1:72336701-72336720 | None:intergenic | 35.0% |
| !! | CCATGTTATCAATTTGCTGT+CGG | - | chr3_1:72336699-72336718 | Msa0373310:CDS | 35.0% |
| ! | ATAATTAGCCTCATAAACGC+AGG | - | chr3_1:72336987-72337006 | Msa0373310:CDS | 35.0% |
| TAAATTCACCTGCGTTTATG+AGG | + | chr3_1:72336998-72337017 | None:intergenic | 35.0% | |
| GATATCAAGAGCAAAAGAAG+AGG | - | chr3_1:72337147-72337166 | Msa0373310:CDS | 35.0% | |
| CATTCTACTGACCATTATAC+GGG | + | chr3_1:72337411-72337430 | None:intergenic | 35.0% | |
| GCATTCTACTGACCATTATA+CGG | + | chr3_1:72337412-72337431 | None:intergenic | 35.0% | |
| ACATTATACTTTGGACCAAC+TGG | - | chr3_1:72337455-72337474 | Msa0373310:intron | 35.0% | |
| CTGTTCAATGTTGAATGAGA+AGG | + | chr3_1:72337932-72337951 | None:intergenic | 35.0% | |
| !! | CTTGACAATTTGCTACACAA+TGG | - | chr3_1:72337976-72337995 | Msa0373310:CDS | 35.0% |
| TTCTTACAGTGGCTTACAAT+AGG | + | chr3_1:72338022-72338041 | None:intergenic | 35.0% | |
| TGTTATAAACTACTCCCGTA+TGG | - | chr3_1:72338131-72338150 | Msa0373310:CDS | 35.0% | |
| ! | TACTCCCGTATGGTTTTTAA+AGG | - | chr3_1:72338141-72338160 | Msa0373310:CDS | 35.0% |
| GGTATCATAAGATATGCTTC+TGG | + | chr3_1:72338227-72338246 | None:intergenic | 35.0% | |
| AGCATGGCATCTACTATAAA+AGG | + | chr3_1:72338335-72338354 | None:intergenic | 35.0% | |
| AGCCAAAATGACATCTATGT+AGG | - | chr3_1:72338376-72338395 | Msa0373310:intron | 35.0% | |
| ATCTATGTAGGTTCCTCTAA+TGG | - | chr3_1:72338388-72338407 | Msa0373310:intron | 35.0% | |
| ACTGCAAACCAAACATAAAG+AGG | + | chr3_1:72338615-72338634 | None:intergenic | 35.0% | |
| !! | TTATGTTTGGTTTGCAGTCA+TGG | - | chr3_1:72338617-72338636 | Msa0373310:CDS | 35.0% |
| !! | TATGTTTGGTTTGCAGTCAT+GGG | - | chr3_1:72338618-72338637 | Msa0373310:CDS | 35.0% |
| TATCTCGCTCAAAAACTACT+TGG | + | chr3_1:72338663-72338682 | None:intergenic | 35.0% | |
| ATTCTCCACACATGAACAAA+AGG | - | chr3_1:72338755-72338774 | Msa0373310:CDS | 35.0% | |
| GGTATATCCTTCATTAAGGA+TGG | - | chr3_1:72338832-72338851 | Msa0373310:intron | 35.0% | |
| TATCCTTCATTAAGGATGGA+AGG | - | chr3_1:72338836-72338855 | Msa0373310:intron | 35.0% | |
| ! | TACTTTTCATATGCAAGACG+AGG | - | chr3_1:72338897-72338916 | Msa0373310:CDS | 35.0% |
| CGAGCATGAGTTAATCAATT+TGG | + | chr3_1:72339087-72339106 | None:intergenic | 35.0% | |
| !! | GTTTCTCTTTTAGTTGATGC+TGG | + | chr3_1:72339162-72339181 | None:intergenic | 35.0% |
| CTAAGTTCAATCTCCACTGA+AGG | - | chr3_1:72334897-72334916 | Msa0373310:three_prime_UTR | 40.0% | |
| !! | ACTGAAGGGTACCATCAAAT+GGG | - | chr3_1:72334912-72334931 | Msa0373310:three_prime_UTR | 40.0% |
| ! | TTCTCATTCCAATTGGTGTC+TGG | + | chr3_1:72334944-72334963 | None:intergenic | 40.0% |
| ACATTGCTAGAAACCTCTTG+CGG | - | chr3_1:72334969-72334988 | Msa0373310:CDS | 40.0% | |
| ATTCCTATTACAGGAACTGC+AGG | - | chr3_1:72334992-72335011 | Msa0373310:CDS | 40.0% | |
| CTGGATATGGCTAAGTGAAA+GGG | + | chr3_1:72335333-72335352 | None:intergenic | 40.0% | |
| ACTGGATATGGCTAAGTGAA+AGG | + | chr3_1:72335334-72335353 | None:intergenic | 40.0% | |
| GATAGTAAACAATCAGCACC+AGG | - | chr3_1:72335362-72335381 | Msa0373310:intron | 40.0% | |
| TGTACAGCCAGAAAAAAGGA+CGG | - | chr3_1:72335698-72335717 | Msa0373310:intron | 40.0% | |
| TGCAGAAATTGCAGGAAACT+CGG | - | chr3_1:72335836-72335855 | Msa0373310:intron | 40.0% | |
| ! | TGTTTTTCACCGCACCATTA+AGG | - | chr3_1:72335975-72335994 | Msa0373310:intron | 40.0% |
| ! | GTTTTTCACCGCACCATTAA+GGG | - | chr3_1:72335976-72335995 | Msa0373310:intron | 40.0% |
| ! | TTTTTCACCGCACCATTAAG+GGG | - | chr3_1:72335977-72335996 | Msa0373310:intron | 40.0% |
| ATACTAACCCCTTAATGGTG+CGG | + | chr3_1:72335987-72336006 | None:intergenic | 40.0% | |
| GAATGAAAGACTACAGCAAG+TGG | - | chr3_1:72336040-72336059 | Msa0373310:intron | 40.0% | |
| GAGTTGAAGGATGATTGAAG+AGG | + | chr3_1:72336117-72336136 | None:intergenic | 40.0% | |
| AAAACAAAATCGGCTGGACA+AGG | - | chr3_1:72336232-72336251 | Msa0373310:intron | 40.0% | |
| CATACTTACTCCCCTTCATA+AGG | - | chr3_1:72336323-72336342 | Msa0373310:CDS | 40.0% | |
| AGGAGTAATCTAGTAGCCAA+AGG | - | chr3_1:72336343-72336362 | Msa0373310:CDS | 40.0% | |
| GATTTGCAGCTTCACCATTT+AGG | - | chr3_1:72336613-72336632 | Msa0373310:intron | 40.0% | |
| ! | CCGACAGCAAATTGATAACA+TGG | + | chr3_1:72336702-72336721 | None:intergenic | 40.0% |
| !! | ATCTCTAGAGTTAGACTTCC+TGG | + | chr3_1:72336748-72336767 | None:intergenic | 40.0% |
| TAAGTTAGATACGTACCTGC+TGG | + | chr3_1:72336774-72336793 | None:intergenic | 40.0% | |
| ACAAAAAGCGAGCAAGATGA+AGG | - | chr3_1:72336878-72336897 | Msa0373310:intron | 40.0% | |
| GATATGCAAGAAATCACACG+TGG | - | chr3_1:72336935-72336954 | Msa0373310:CDS | 40.0% | |
| TTGTTCATTTCTGTCCGTGA+AGG | + | chr3_1:72336966-72336985 | None:intergenic | 40.0% | |
| CATAATCCAAGTGTGCTATC+AGG | - | chr3_1:72337325-72337344 | Msa0373310:intron | 40.0% | |
| AATCGATACTCAGTCAGTAG+AGG | - | chr3_1:72337353-72337372 | Msa0373310:intron | 40.0% | |
| ATAATGGTCAGTAGAATGCC+AGG | - | chr3_1:72337413-72337432 | Msa0373310:intron | 40.0% | |
| ATGTGTCTGGTGACATTAGT+GGG | + | chr3_1:72337779-72337798 | None:intergenic | 40.0% | |
| GAAGACAAAACTTGAAGGTG+TGG | - | chr3_1:72337877-72337896 | Msa0373310:intron | 40.0% | |
| GGTTCCTCTAATGGAAATAC+TGG | - | chr3_1:72338397-72338416 | Msa0373310:intron | 40.0% | |
| TCCTCTAATGGAAATACTGG+AGG | - | chr3_1:72338400-72338419 | Msa0373310:intron | 40.0% | |
| TCCTCCAGTATTTCCATTAG+AGG | + | chr3_1:72338404-72338423 | None:intergenic | 40.0% | |
| CATACTAAGGCAAGAAAAGG+AGG | - | chr3_1:72338430-72338449 | Msa0373310:intron | 40.0% | |
| ATGAACAAAAGGCTCCCAAT+GGG | - | chr3_1:72338766-72338785 | Msa0373310:CDS | 40.0% | |
| ! | TGTTGTTTGATCCCAGTTGT+TGG | + | chr3_1:72338795-72338814 | None:intergenic | 40.0% |
| CTTCCTTCCATCCTTAATGA+AGG | + | chr3_1:72338842-72338861 | None:intergenic | 40.0% | |
| AGGATGGAAGGAAGATACAA+AGG | - | chr3_1:72338848-72338867 | Msa0373310:intron | 40.0% | |
| TCTATCATGTCCACACATTC+TGG | - | chr3_1:72338925-72338944 | Msa0373310:CDS | 40.0% | |
| AGAAAATGGTCCAGAATGTG+TGG | + | chr3_1:72338938-72338957 | None:intergenic | 40.0% | |
| TTAAAAGACAAGGGTGGCAG+AGG | + | chr3_1:72334760-72334779 | None:intergenic | 45.0% | |
| !! | GAAAGAAGTGTTGGTGTCAG+TGG | + | chr3_1:72334818-72334837 | None:intergenic | 45.0% |
| ! | CATTTGATGGTACCCTTCAG+TGG | + | chr3_1:72334913-72334932 | None:intergenic | 45.0% |
| !! | CACTGAAGGGTACCATCAAA+TGG | - | chr3_1:72334911-72334930 | Msa0373310:three_prime_UTR | 45.0% |
| ! | TCTGGAATGAGCCCATTTGA+TGG | + | chr3_1:72334926-72334945 | None:intergenic | 45.0% |
| GTGGAGCTTCTCATTCCAAT+TGG | + | chr3_1:72334951-72334970 | None:intergenic | 45.0% | |
| !! | GCAAGAGGTTTCTAGCAATG+TGG | + | chr3_1:72334970-72334989 | None:intergenic | 45.0% |
| CTGTAATAGGAATCCGCAAG+AGG | + | chr3_1:72334985-72335004 | None:intergenic | 45.0% | |
| CTCTTGCGGATTCCTATTAC+AGG | - | chr3_1:72334983-72335002 | Msa0373310:CDS | 45.0% | |
| TTGCCTGCAGTTCCTGTAAT+AGG | + | chr3_1:72334998-72335017 | None:intergenic | 45.0% | |
| TTGGAGAAGACAAGTTCGAG+AGG | - | chr3_1:72335139-72335158 | Msa0373310:CDS | 45.0% | |
| TGGAGAAGACAAGTTCGAGA+GGG | - | chr3_1:72335140-72335159 | Msa0373310:CDS | 45.0% | |
| AGACAAGTTCGAGAGGGAAA+AGG | - | chr3_1:72335146-72335165 | Msa0373310:CDS | 45.0% | |
| GGAAAAGGTTCTGCTGGATA+TGG | - | chr3_1:72335161-72335180 | Msa0373310:CDS | 45.0% | |
| !! | AAGAGTGCCTTGAGGTTTAC+AGG | - | chr3_1:72335187-72335206 | Msa0373310:CDS | 45.0% |
| ! | AGCTAGTCTGCATCAGAAGT+TGG | - | chr3_1:72335239-72335258 | Msa0373310:CDS | 45.0% |
| GTACAGCCAGAAAAAAGGAC+GGG | - | chr3_1:72335699-72335718 | Msa0373310:intron | 45.0% | |
| ATTCAATCACTCCAGCACTC+CGG | - | chr3_1:72335742-72335761 | Msa0373310:intron | 45.0% | |
| !! | TCACTTGCACAGCTCTGAAT+TGG | + | chr3_1:72335800-72335819 | None:intergenic | 45.0% |
| GCAAAGGCTGTACAATGAGA+AGG | - | chr3_1:72335935-72335954 | Msa0373310:intron | 45.0% | |
| ACACAGCTTGTCCACAATCT+TGG | - | chr3_1:72336082-72336101 | Msa0373310:intron | 45.0% | |
| CACAGCTTGTCCACAATCTT+GGG | - | chr3_1:72336083-72336102 | Msa0373310:intron | 45.0% | |
| CTTGTCCACAATCTTGGGAA+AGG | - | chr3_1:72336088-72336107 | Msa0373310:intron | 45.0% | |
| GGAATCCTTTCCCAAGATTG+TGG | + | chr3_1:72336096-72336115 | None:intergenic | 45.0% | |
| ACAAATCATTCAAGCTGGGG+TGG | + | chr3_1:72336139-72336158 | None:intergenic | 45.0% | |
| CGCACAAATCATTCAAGCTG+GGG | + | chr3_1:72336142-72336161 | None:intergenic | 45.0% | |
| CCGCACAAATCATTCAAGCT+GGG | + | chr3_1:72336143-72336162 | None:intergenic | 45.0% | |
| ! | CCCAGCTTGAATGATTTGTG+CGG | - | chr3_1:72336140-72336159 | Msa0373310:intron | 45.0% |
| TCCGCACAAATCATTCAAGC+TGG | + | chr3_1:72336144-72336163 | None:intergenic | 45.0% | |
| ATCTGATACCTCTGCTGATG+AGG | + | chr3_1:72336725-72336744 | None:intergenic | 45.0% | |
| ! | AACTCTAGAGATTGTCCAGC+AGG | - | chr3_1:72336756-72336775 | Msa0373310:CDS | 45.0% |
| GGAGCTATTCCAAAAGAAGC+AGG | - | chr3_1:72336899-72336918 | Msa0373310:intron | 45.0% | |
| GCTATTCCAAAAGAAGCAGG+AGG | - | chr3_1:72336902-72336921 | Msa0373310:CDS | 45.0% | |
| TGCTCATGAGGAGATTGGAA+TGG | + | chr3_1:72337117-72337136 | None:intergenic | 45.0% | |
| TTCCAATCTCCTCATGAGCA+TGG | - | chr3_1:72337117-72337136 | Msa0373310:intron | 45.0% | |
| ATCCATGCTCATGAGGAGAT+TGG | + | chr3_1:72337122-72337141 | None:intergenic | 45.0% | |
| TCTGTTCATCCATGCTCATG+AGG | + | chr3_1:72337129-72337148 | None:intergenic | 45.0% | |
| TTCGAGCAGGAAGGCTATAA+TGG | - | chr3_1:72337171-72337190 | Msa0373310:CDS | 45.0% | |
| CTGGCTAGAAGAATACAGCA+TGG | - | chr3_1:72337234-72337253 | Msa0373310:CDS | 45.0% | |
| TCTCATCCTGATAGCACACT+TGG | + | chr3_1:72337334-72337353 | None:intergenic | 45.0% | |
| !!! | CTGCTGCTATTTTTCAGCTC+TGG | - | chr3_1:72337506-72337525 | Msa0373310:intron | 45.0% |
| TGTGTCTGGTGACATTAGTG+GGG | + | chr3_1:72337778-72337797 | None:intergenic | 45.0% | |
| CATGTGTCTGGTGACATTAG+TGG | + | chr3_1:72337780-72337799 | None:intergenic | 45.0% | |
| TGTATACTACGGCATGTGTC+TGG | + | chr3_1:72337792-72337811 | None:intergenic | 45.0% | |
| !! | GAGCTTGCTCCGTGAATTTT+TGG | + | chr3_1:72337828-72337847 | None:intergenic | 45.0% |
| !! | TGTTATCTTGGGAAGTGCTG+AGG | + | chr3_1:72338187-72338206 | None:intergenic | 45.0% |
| ACTAAGGCAAGAAAAGGAGG+AGG | - | chr3_1:72338433-72338452 | Msa0373310:intron | 45.0% | |
| GGAGGATAAGAAAAGACAGC+AGG | - | chr3_1:72338451-72338470 | Msa0373310:intron | 45.0% | |
| GCAGTCATGGGAAAAGAAGA+AGG | - | chr3_1:72338630-72338649 | Msa0373310:CDS | 45.0% | |
| GCTCAAAAACTACTTGGCTC+TGG | + | chr3_1:72338657-72338676 | None:intergenic | 45.0% | |
| CATGAACAAAAGGCTCCCAA+TGG | - | chr3_1:72338765-72338784 | Msa0373310:CDS | 45.0% | |
| CCAGTTGTTGGATACCCATT+GGG | + | chr3_1:72338783-72338802 | None:intergenic | 45.0% | |
| CCAATGGGTATCCAACAACT+GGG | - | chr3_1:72338781-72338800 | Msa0373310:intron | 45.0% | |
| !! | AATATATGTATAAATATATA+GGG | + | chr3_1:72337738-72337757 | None:intergenic | 5.0% |
| !! | AGAAGTGTTGGTGTCAGTGG+AGG | + | chr3_1:72334815-72334834 | None:intergenic | 50.0% |
| GGCTCATTCCAGACACCAAT+TGG | - | chr3_1:72334933-72334952 | Msa0373310:exon | 50.0% | |
| !! | TATGGAGCAAGAGTGCCTTG+AGG | - | chr3_1:72335179-72335198 | Msa0373310:CDS | 50.0% |
| TCAGAAGTTGGCTGAAGCAG+AGG | - | chr3_1:72335251-72335270 | Msa0373310:CDS | 50.0% | |
| AGGAAGAGATCGTTCGCCAA+GGG | + | chr3_1:72335301-72335320 | None:intergenic | 50.0% | |
| !!! | AGCGTACCCGTCCTTTTTTC+TGG | + | chr3_1:72335708-72335727 | None:intergenic | 50.0% |
| TTCAATCACTCCAGCACTCC+GGG | - | chr3_1:72335743-72335762 | Msa0373310:intron | 50.0% | |
| CTTTCCTCAAGCGCATTTCC+CGG | + | chr3_1:72335764-72335783 | None:intergenic | 50.0% | |
| !! | TCAGCAGAGGTATCAGATCC+AGG | - | chr3_1:72336727-72336746 | Msa0373310:CDS | 50.0% |
| ! | CCAGTTCCTCCTGCTTCTTT+TGG | + | chr3_1:72336911-72336930 | None:intergenic | 50.0% |
| CCAAAAGAAGCAGGAGGAAC+TGG | - | chr3_1:72336908-72336927 | Msa0373310:CDS | 50.0% | |
| CACACGTGGAGATTCCTTCA+CGG | - | chr3_1:72336949-72336968 | Msa0373310:CDS | 50.0% | |
| CAAAAGAAGAGGCTTCGAGC+AGG | - | chr3_1:72337158-72337177 | Msa0373310:CDS | 50.0% | |
| AGCTGAACGTGCCCGTATAA+TGG | - | chr3_1:72337397-72337416 | Msa0373310:intron | 50.0% | |
| CTGTGTGATTGCTCTCCAGT+TGG | + | chr3_1:72337473-72337492 | None:intergenic | 50.0% | |
| GTGTCTGGTGACATTAGTGG+GGG | + | chr3_1:72337777-72337796 | None:intergenic | 50.0% | |
| !! | ATTTGGAAGGCGTCTACTGC+TGG | + | chr3_1:72338710-72338729 | None:intergenic | 50.0% |
| ! | GGGAGCCTTTTGTTCATGTG+TGG | + | chr3_1:72338763-72338782 | None:intergenic | 50.0% |
| CCCAATGGGTATCCAACAAC+TGG | - | chr3_1:72338780-72338799 | Msa0373310:intron | 50.0% | |
| CCCAGTTGTTGGATACCCAT+TGG | + | chr3_1:72338784-72338803 | None:intergenic | 50.0% | |
| AAGACAAGGGTGGCAGAGGT+GGG | + | chr3_1:72334756-72334775 | None:intergenic | 55.0% | |
| AAAGACAAGGGTGGCAGAGG+TGG | + | chr3_1:72334757-72334776 | None:intergenic | 55.0% | |
| CGAGAGGGAAAAGGTTCTGC+TGG | - | chr3_1:72335155-72335174 | Msa0373310:CDS | 55.0% | |
| ACTCACCTACTCCTGTCCCT+TGG | - | chr3_1:72335282-72335301 | Msa0373310:intron | 55.0% | |
| CAGGAAGAGATCGTTCGCCA+AGG | + | chr3_1:72335302-72335321 | None:intergenic | 55.0% | |
| CTTGGCGAACGATCTCTTCC+TGG | - | chr3_1:72335300-72335319 | Msa0373310:intron | 55.0% | |
| GCGAACGATCTCTTCCTGGA+CGG | - | chr3_1:72335304-72335323 | Msa0373310:intron | 55.0% | |
| CGAACGATCTCTTCCTGGAC+GGG | - | chr3_1:72335305-72335324 | Msa0373310:intron | 55.0% | |
| !! | AAGTGAAAGGGTACCCGTCC+AGG | + | chr3_1:72335321-72335340 | None:intergenic | 55.0% |
| TCAAGCTGGGGTGGAGTTGA+AGG | + | chr3_1:72336130-72336149 | None:intergenic | 55.0% | |
| AGAAGAGGCTTCGAGCAGGA+AGG | - | chr3_1:72337162-72337181 | Msa0373310:CDS | 55.0% | |
| GTGGATGTTAGCACGCGATG+AGG | - | chr3_1:72337207-72337226 | Msa0373310:CDS | 55.0% | |
| TGGTGACATTAGTGGGGGCT+AGG | + | chr3_1:72337772-72337791 | None:intergenic | 55.0% | |
| GTTCGCCAAGGGACAGGAGT+AGG | + | chr3_1:72335290-72335309 | None:intergenic | 60.0% | |
| GAGATCGTTCGCCAAGGGAC+AGG | + | chr3_1:72335296-72335315 | None:intergenic | 60.0% | |
| AAGCGCATTTCCCGGAGTGC+TGG | + | chr3_1:72335756-72335775 | None:intergenic | 60.0% | |
| CACTCCGGGAAATGCGCTTG+AGG | - | chr3_1:72335757-72335776 | Msa0373310:intron | 60.0% | |
| AGGCGTCTACTGCTGGTGCT+TGG | + | chr3_1:72338703-72338722 | None:intergenic | 60.0% | |
| GCTGTCGGCCTCATCAGCAG+AGG | - | chr3_1:72336714-72336733 | Msa0373310:CDS | 65.0% | |
| ! | TAGCACGCGATGAGGAGCGC+TGG | - | chr3_1:72337215-72337234 | Msa0373310:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 72334709 | 72339199 | 72334709 | ID=Msa0373310;Name=Msa0373310 |
| chr3_1 | mRNA | 72334709 | 72339199 | 72334709 | ID=Msa0373310-mRNA-1;Parent=Msa0373310;Name=Msa0373310-mRNA-1;_AED=0.09;_eAED=0.09;_QI=221|1|1|1|1|1|11|236|595 |
| chr3_1 | exon | 72334709 | 72335274 | 72334709 | ID=Msa0373310-mRNA-1:exon:16097;Parent=Msa0373310-mRNA-1 |
| chr3_1 | exon | 72335436 | 72335510 | 72335436 | ID=Msa0373310-mRNA-1:exon:16096;Parent=Msa0373310-mRNA-1 |
| chr3_1 | exon | 72336312 | 72336385 | 72336312 | ID=Msa0373310-mRNA-1:exon:16095;Parent=Msa0373310-mRNA-1 |
| chr3_1 | exon | 72336474 | 72336561 | 72336474 | ID=Msa0373310-mRNA-1:exon:16094;Parent=Msa0373310-mRNA-1 |
| chr3_1 | exon | 72336653 | 72336804 | 72336653 | ID=Msa0373310-mRNA-1:exon:16093;Parent=Msa0373310-mRNA-1 |
| chr3_1 | exon | 72336900 | 72337059 | 72336900 | ID=Msa0373310-mRNA-1:exon:16092;Parent=Msa0373310-mRNA-1 |
| chr3_1 | exon | 72337131 | 72337286 | 72337131 | ID=Msa0373310-mRNA-1:exon:16091;Parent=Msa0373310-mRNA-1 |
| chr3_1 | exon | 72337655 | 72337867 | 72337655 | ID=Msa0373310-mRNA-1:exon:16090;Parent=Msa0373310-mRNA-1 |
| chr3_1 | exon | 72337952 | 72338203 | 72337952 | ID=Msa0373310-mRNA-1:exon:16089;Parent=Msa0373310-mRNA-1 |
| chr3_1 | exon | 72338582 | 72338785 | 72338582 | ID=Msa0373310-mRNA-1:exon:16088;Parent=Msa0373310-mRNA-1 |
| chr3_1 | exon | 72338895 | 72339199 | 72338895 | ID=Msa0373310-mRNA-1:exon:16087;Parent=Msa0373310-mRNA-1 |
| chr3_1 | five_prime_UTR | 72338979 | 72339199 | 72338979 | ID=Msa0373310-mRNA-1:five_prime_utr;Parent=Msa0373310-mRNA-1 |
| chr3_1 | CDS | 72338895 | 72338978 | 72338895 | ID=Msa0373310-mRNA-1:cds;Parent=Msa0373310-mRNA-1 |
| chr3_1 | CDS | 72338582 | 72338785 | 72338582 | ID=Msa0373310-mRNA-1:cds;Parent=Msa0373310-mRNA-1 |
| chr3_1 | CDS | 72337952 | 72338203 | 72337952 | ID=Msa0373310-mRNA-1:cds;Parent=Msa0373310-mRNA-1 |
| chr3_1 | CDS | 72337655 | 72337867 | 72337655 | ID=Msa0373310-mRNA-1:cds;Parent=Msa0373310-mRNA-1 |
| chr3_1 | CDS | 72337131 | 72337286 | 72337131 | ID=Msa0373310-mRNA-1:cds;Parent=Msa0373310-mRNA-1 |
| chr3_1 | CDS | 72336900 | 72337059 | 72336900 | ID=Msa0373310-mRNA-1:cds;Parent=Msa0373310-mRNA-1 |
| chr3_1 | CDS | 72336653 | 72336804 | 72336653 | ID=Msa0373310-mRNA-1:cds;Parent=Msa0373310-mRNA-1 |
| chr3_1 | CDS | 72336474 | 72336561 | 72336474 | ID=Msa0373310-mRNA-1:cds;Parent=Msa0373310-mRNA-1 |
| chr3_1 | CDS | 72336312 | 72336385 | 72336312 | ID=Msa0373310-mRNA-1:cds;Parent=Msa0373310-mRNA-1 |
| chr3_1 | CDS | 72335436 | 72335510 | 72335436 | ID=Msa0373310-mRNA-1:cds;Parent=Msa0373310-mRNA-1 |
| chr3_1 | CDS | 72334945 | 72335274 | 72334945 | ID=Msa0373310-mRNA-1:cds;Parent=Msa0373310-mRNA-1 |
| chr3_1 | three_prime_UTR | 72334709 | 72334944 | 72334709 | ID=Msa0373310-mRNA-1:three_prime_utr;Parent=Msa0373310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
