Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467770 | XP_003601793.2 | 97.815 | 595 | 13 | 0 | 1 | 595 | 1 | 595 | 0.0 | 1198 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467770 | sp|Q9C7G0|MA658_ARATH | 62.943 | 564 | 202 | 4 | 1 | 562 | 1 | 559 | 0.0 | 713 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467770 | G7JC01 | 97.815 | 595 | 13 | 0 | 1 | 595 | 1 | 595 | 0.0 | 1198 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028620 | Msa0467770 | 0.813623 | 2.331232e-51 | -8.615850e-47 |
| Msa0191020 | Msa0467770 | 0.801244 | 9.864136e-49 | -8.615850e-47 |
| Msa0373310 | Msa0467770 | 0.947431 | 6.812526e-106 | -8.615850e-47 |
| Msa0392380 | Msa0467770 | 0.819580 | 1.077917e-52 | -8.615850e-47 |
| Msa0421890 | Msa0467770 | 0.968363 | 1.431960e-128 | -8.615850e-47 |
| Msa0425170 | Msa0467770 | 0.800517 | 1.388820e-48 | -8.615850e-47 |
| Msa0440320 | Msa0467770 | 0.828082 | 1.095623e-54 | -8.615850e-47 |
| Msa0467770 | Msa0487500 | 0.830798 | 2.397045e-55 | -8.615850e-47 |
| Msa0467770 | Msa0514170 | 0.953931 | 9.208019e-112 | -8.615850e-47 |
| Msa0467770 | Msa0968350 | 0.801575 | 8.439356e-49 | -8.615850e-47 |
| Msa0467770 | Msa1078930 | 0.806279 | 8.886083e-50 | -8.615850e-47 |
| Msa0467770 | Msa1123930 | 0.800311 | 1.529858e-48 | -8.615850e-47 |
| Msa0467770 | Msa1353470 | 0.804527 | 2.069636e-49 | -8.615850e-47 |
| Msa0467770 | Msa1426070 | 0.810107 | 1.358595e-50 | -8.615850e-47 |
| Msa0243600 | Msa0467770 | 0.816033 | 6.811253e-52 | -8.615850e-47 |
| Msa0244940 | Msa0467770 | 0.804877 | 1.748958e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467770 | MtrunA17_Chr3g0122591 | 96.517 | 603 | 13 | 1 | 1 | 595 | 1 | 603 | 0.0 | 1192 |
| Msa0467770 | MtrunA17_Chr5g0444881 | 45.997 | 587 | 292 | 8 | 17 | 595 | 13 | 582 | 1.13e-164 | 482 |
| Msa0467770 | MtrunA17_Chr6g0476051 | 45.312 | 512 | 267 | 8 | 17 | 524 | 14 | 516 | 1.04e-139 | 422 |
| Msa0467770 | MtrunA17_Chr1g0164981 | 40.614 | 554 | 302 | 8 | 1 | 532 | 1 | 549 | 5.71e-131 | 396 |
| Msa0467770 | MtrunA17_Chr1g0188201 | 40.728 | 577 | 318 | 8 | 17 | 588 | 13 | 570 | 8.45e-131 | 400 |
| Msa0467770 | MtrunA17_Chr8g0354131 | 40.253 | 554 | 305 | 8 | 18 | 565 | 13 | 546 | 1.35e-125 | 381 |
| Msa0467770 | MtrunA17_Chr7g0245851 | 39.448 | 507 | 297 | 5 | 8 | 512 | 355 | 853 | 3.55e-107 | 346 |
| Msa0467770 | MtrunA17_Chr8g0345241 | 36.981 | 530 | 287 | 12 | 4 | 520 | 7 | 502 | 2.22e-87 | 280 |
| Msa0467770 | MtrunA17_Chr4g0039561 | 57.692 | 52 | 22 | 0 | 28 | 79 | 144 | 195 | 7.24e-14 | 70.9 |
| Msa0467770 | MtrunA17_Chr5g0410361 | 43.023 | 86 | 46 | 2 | 241 | 326 | 11 | 93 | 1.41e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467770 | AT1G27920.1 | 62.943 | 564 | 202 | 4 | 1 | 562 | 1 | 559 | 0.0 | 713 |
| Msa0467770 | AT1G27920.2 | 68.796 | 407 | 124 | 2 | 1 | 405 | 1 | 406 | 0.0 | 577 |
| Msa0467770 | AT4G26760.1 | 46.595 | 558 | 279 | 6 | 15 | 559 | 11 | 562 | 1.32e-160 | 472 |
| Msa0467770 | AT5G55230.3 | 48.333 | 540 | 265 | 6 | 12 | 544 | 8 | 540 | 5.23e-160 | 470 |
| Msa0467770 | AT5G55230.1 | 48.333 | 540 | 265 | 6 | 12 | 544 | 8 | 540 | 5.23e-160 | 470 |
| Msa0467770 | AT5G55230.2 | 45.870 | 569 | 265 | 7 | 12 | 544 | 8 | 569 | 1.89e-153 | 455 |
| Msa0467770 | AT2G01910.1 | 41.734 | 496 | 280 | 4 | 18 | 506 | 16 | 509 | 2.94e-134 | 405 |
| Msa0467770 | AT2G38720.1 | 43.625 | 502 | 273 | 5 | 23 | 522 | 12 | 505 | 9.48e-133 | 399 |
| Msa0467770 | AT1G14690.1 | 39.734 | 526 | 304 | 5 | 18 | 532 | 16 | 539 | 9.80e-130 | 393 |
| Msa0467770 | AT1G14690.2 | 39.734 | 526 | 304 | 5 | 18 | 532 | 16 | 539 | 9.80e-130 | 393 |
| Msa0467770 | AT5G51600.1 | 43.182 | 528 | 286 | 5 | 16 | 538 | 12 | 530 | 2.63e-126 | 388 |
| Msa0467770 | AT2G01910.2 | 41.064 | 470 | 268 | 4 | 44 | 506 | 1 | 468 | 6.74e-124 | 377 |
| Msa0467770 | AT3G60840.1 | 37.643 | 526 | 312 | 7 | 16 | 538 | 12 | 524 | 1.57e-109 | 343 |
| Msa0467770 | AT5G62250.2 | 38.068 | 528 | 314 | 7 | 12 | 530 | 2 | 525 | 2.02e-96 | 305 |
| Msa0467770 | AT5G62250.1 | 38.068 | 528 | 314 | 7 | 12 | 530 | 2 | 525 | 2.02e-96 | 305 |
Find 153 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCAAATTTAGATAATT+TGG | 0.060973 | 3_3:+69197888 | Msa0467770:intron |
| ATTCTTGACAAAGAAATTTA+AGG | 0.140374 | 3_3:-69201738 | None:intergenic |
| CGAGCATGAGTTAATCAATT+TGG | 0.157195 | 3_3:-69201864 | None:intergenic |
| CCAGTTCCTCCTGCTTCTTT+TGG | 0.184387 | 3_3:-69199688 | None:intergenic |
| CTTCCATTTAAGCTTCTATT+TGG | 0.209135 | 3_3:-69201504 | None:intergenic |
| ATCAAATCTTTGGAATCTTA+TGG | 0.243314 | 3_3:+69199425 | Msa0467770:CDS |
| TAGATAATTTGGGATGAAAT+TGG | 0.251538 | 3_3:+69197899 | Msa0467770:intron |
| GCATTCTACTGACCATTATA+CGG | 0.261311 | 3_3:-69200189 | None:intergenic |
| GCAAAACACTATCAAATCTT+TGG | 0.266126 | 3_3:+69199415 | Msa0467770:CDS |
| TCCTCCAGTATTTCCATTAG+AGG | 0.271034 | 3_3:-69201181 | None:intergenic |
| TTGCCTGCAGTTCCTGTAAT+AGG | 0.273628 | 3_3:-69197774 | None:intergenic |
| CTTCCAAATAGAAGCTTAAA+TGG | 0.280847 | 3_3:+69201501 | Msa0467770:CDS |
| TCTATCATGTCCACACATTC+TGG | 0.292323 | 3_3:+69201705 | Msa0467770:CDS |
| AAAGAAATTTAAGGAGAAAA+TGG | 0.296087 | 3_3:-69201729 | None:intergenic |
| AAGAGTGCCTTGAGGTTTAC+AGG | 0.300573 | 3_3:+69197966 | Msa0467770:CDS |
| ATCTCTAGAGTTAGACTTCC+TGG | 0.307135 | 3_3:-69199525 | None:intergenic |
| GATTTGCAGCTTCACCATTT+AGG | 0.323978 | 3_3:+69199393 | Msa0467770:intron |
| CTTTCCTCAAGCGCATTTCC+CGG | 0.325728 | 3_3:-69198541 | None:intergenic |
| TCAAGGTATATCCTTCATTA+AGG | 0.332212 | 3_3:+69201608 | Msa0467770:CDS |
| GGAAAAGGTTCTGCTGGATA+TGG | 0.335210 | 3_3:+69197940 | Msa0467770:CDS |
| TCCCTTGCACAGCTCTGAAT+TGG | 0.337961 | 3_3:-69198577 | None:intergenic |
| TTCTCAAATTTAGATAATTT+GGG | 0.339890 | 3_3:+69197889 | Msa0467770:intron |
| CCCAATGGGTATCCAACAAC+TGG | 0.354408 | 3_3:+69201560 | Msa0467770:CDS |
| GAATCCATCAACAAGCAAAA+TGG | 0.363080 | 3_3:-69201961 | None:intergenic |
| GAGCATGAGTTAATCAATTT+GGG | 0.364598 | 3_3:-69201863 | None:intergenic |
| ATCTATGTAGGTTCCTCTAA+TGG | 0.370668 | 3_3:+69201168 | Msa0467770:intron |
| ACACAGCTTGTCCACAATCT+TGG | 0.385265 | 3_3:+69198862 | Msa0467770:CDS |
| AGCTGAACGTGCCCGTATAA+TGG | 0.385407 | 3_3:+69200177 | Msa0467770:CDS |
| CTCGTGCGGATTCCTATTAC+AGG | 0.385809 | 3_3:+69197762 | Msa0467770:CDS |
| TTTGTATGTTCACAACAGTA+TGG | 0.401421 | 3_3:-69201797 | None:intergenic |
| CACTGAAGGGTACCATCAAA+TGG | 0.402116 | 3_3:+69197690 | Msa0467770:exon |
| CTTGGCGAACGATCTCTTCC+TGG | 0.402388 | 3_3:+69198079 | Msa0467770:CDS |
| CTCATTTACTGTAACGATTG+AGG | 0.405166 | 3_3:-69198648 | None:intergenic |
| GGCTCATTCCAGACACCAAT+TGG | 0.407854 | 3_3:+69197712 | Msa0467770:CDS |
| CCAAAAGAAGCAGGAGGAAC+TGG | 0.410765 | 3_3:+69199688 | Msa0467770:CDS |
| GGTTCCTCTAATGGAAATAC+TGG | 0.415098 | 3_3:+69201177 | Msa0467770:intron |
| AGAATTTCTGCAGAAATTGC+AGG | 0.416093 | 3_3:+69198608 | Msa0467770:CDS |
| CACAGCTTGTCCACAATCTT+GGG | 0.424296 | 3_3:+69198863 | Msa0467770:CDS |
| TGTTGTTTGATCCCAGTTGT+TGG | 0.428436 | 3_3:-69201572 | None:intergenic |
| TTCGAGCAGGAAGGCTATAA+TGG | 0.429177 | 3_3:+69199951 | Msa0467770:CDS |
| GTAATGTAAGTGTAAGCTTT+GGG | 0.434845 | 3_3:-69197510 | None:intergenic |
| GGATCAAACAACATAAATTC+AGG | 0.435219 | 3_3:+69201582 | Msa0467770:CDS |
| TTCTCATTCCAATTGGTGTC+TGG | 0.435378 | 3_3:-69197720 | None:intergenic |
| GGTAATGTAAGTGTAAGCTT+TGG | 0.437291 | 3_3:-69197511 | None:intergenic |
| AAGCGCATTTCCCGGAGTGC+TGG | 0.442192 | 3_3:-69198533 | None:intergenic |
| TCAAGCTGGGGTGGAGTTGA+AGG | 0.444352 | 3_3:-69198907 | None:intergenic |
| TAAATTCACCTGCGTTTATG+AGG | 0.449706 | 3_3:-69199775 | None:intergenic |
| ATTTGGAAGGCGTCTACTGC+TGG | 0.453067 | 3_3:-69201487 | None:intergenic |
| TCATTTACTGTAACGATTGA+GGG | 0.455769 | 3_3:-69198647 | None:intergenic |
| AACATAAATTCAGGAAATCA+AGG | 0.473671 | 3_3:+69201591 | Msa0467770:CDS |
| TTCAATCACTCCAGCACTCC+GGG | 0.473685 | 3_3:+69198523 | Msa0467770:CDS |
| ATCCATGCTCATGAGGAGAT+TGG | 0.476554 | 3_3:-69199899 | None:intergenic |
| CCAGTTGTTGGATACCCATT+GGG | 0.477027 | 3_3:-69201560 | None:intergenic |
| AAGTGAAAGGGTACCCGTCC+AGG | 0.477643 | 3_3:-69198097 | None:intergenic |
| CTTCCTTCCATCCTTAATGA+AGG | 0.477715 | 3_3:-69201619 | None:intergenic |
| CCCAGTTGTTGGATACCCAT+TGG | 0.479704 | 3_3:-69201561 | None:intergenic |
| GTGGAGCTTCTCATTCCAAT+TGG | 0.480272 | 3_3:-69197727 | None:intergenic |
| AAGCAAAATCCAATACCAAA+TGG | 0.481519 | 3_3:+69197557 | Msa0467770:five_prime_UTR |
| TCCGCACAAATCATTCAAGC+TGG | 0.482056 | 3_3:-69198921 | None:intergenic |
| CATTTAAGCTTCTATTTGGA+AGG | 0.482390 | 3_3:-69201500 | None:intergenic |
| TAACATACTAAGGCAAGAAA+AGG | 0.486755 | 3_3:+69201207 | Msa0467770:CDS |
| ATTCTCCACACATGAACAAA+AGG | 0.488062 | 3_3:+69201535 | Msa0467770:CDS |
| AACTCTAGAGATTGTCCAGC+AGG | 0.488428 | 3_3:+69199536 | Msa0467770:CDS |
| TGGAGGAATATAACATACTA+AGG | 0.491206 | 3_3:+69201197 | Msa0467770:CDS |
| AGCTAGTCTGCATCAGAAGT+TGG | 0.492163 | 3_3:+69198018 | Msa0467770:CDS |
| CCATGTTATCAATTTGCTGT+CGG | 0.492212 | 3_3:+69199479 | Msa0467770:CDS |
| GAGATCGTTCGCCAAGGGAC+AGG | 0.492757 | 3_3:-69198072 | None:intergenic |
| CCGTGATATTGAGTTTATGT+AGG | 0.502204 | 3_3:-69198970 | None:intergenic |
| TGCAGAAATTGCAGGAAACT+CGG | 0.505191 | 3_3:+69198616 | Msa0467770:CDS |
| AAAGACAAGGGTGGCAGAGG+TGG | 0.506369 | 3_3:-69197533 | None:intergenic |
| TCAGCAGAGGTATCAGATCC+AGG | 0.511058 | 3_3:+69199507 | Msa0467770:CDS |
| CGAGAGGGAAAAGGTTCTGC+TGG | 0.520433 | 3_3:+69197934 | Msa0467770:CDS |
| CCGACAGCAAATTGATAACA+TGG | 0.522933 | 3_3:-69199479 | None:intergenic |
| ACTCACCTACTCCTGTCCCT+TGG | 0.525401 | 3_3:+69198061 | Msa0467770:CDS |
| AGGCGTCTACTGCTGGTGCT+TGG | 0.527547 | 3_3:-69201480 | None:intergenic |
| AGACAAGTTCGAGAGGGAAA+AGG | 0.527902 | 3_3:+69197925 | Msa0467770:CDS |
| GGTATATCCTTCATTAAGGA+TGG | 0.530437 | 3_3:+69201612 | Msa0467770:CDS |
| GGAATCCTTTCCCAAGATTG+TGG | 0.535210 | 3_3:-69198873 | None:intergenic |
| CTAAGTTCAATCTCCACTGA+AGG | 0.536725 | 3_3:+69197676 | Msa0467770:five_prime_UTR |
| TCAGAAGTTGGCTGAAGCAG+AGG | 0.538192 | 3_3:+69198030 | Msa0467770:CDS |
| CCGCACAAATCATTCAAGCT+GGG | 0.539404 | 3_3:-69198920 | None:intergenic |
| TCTGGAATGAGCCCATTTGA+TGG | 0.540651 | 3_3:-69197702 | None:intergenic |
| ACTGAAGGGTACCATCAAAT+GGG | 0.548310 | 3_3:+69197691 | Msa0467770:exon |
| CACTCCGGGAAATGCGCTTG+AGG | 0.548570 | 3_3:+69198537 | Msa0467770:CDS |
| CAAAAGAAGAGGCTTCGAGC+AGG | 0.554081 | 3_3:+69199938 | Msa0467770:CDS |
| CGAACGATCTCTTCCTGGAC+GGG | 0.556832 | 3_3:+69198084 | Msa0467770:CDS |
| ATTCAATCACTCCAGCACTC+CGG | 0.557459 | 3_3:+69198522 | Msa0467770:CDS |
| TTCCAATCTCCTCATGAGCA+TGG | 0.558030 | 3_3:+69199897 | Msa0467770:CDS |
| TTGTTCATTTCTGTCCGTGA+AGG | 0.559381 | 3_3:-69199743 | None:intergenic |
| CATTTGATGGTACCCTTCAG+TGG | 0.559511 | 3_3:-69197689 | None:intergenic |
| ATTCCTATTACAGGAACTGC+AGG | 0.560645 | 3_3:+69197771 | Msa0467770:CDS |
| GGAGCTATTCCAAAAGAAGC+AGG | 0.561788 | 3_3:+69199679 | Msa0467770:CDS |
| TTAAAAGACAAGGGTGGCAG+AGG | 0.562239 | 3_3:-69197536 | None:intergenic |
| CTTGTCCACAATCTTGGGAA+AGG | 0.564387 | 3_3:+69198868 | Msa0467770:CDS |
| GTCTTGCATATGAAAAGTAA+AGG | 0.564831 | 3_3:-69201673 | None:intergenic |
| GAATGAAAGACTACAGCAAG+TGG | 0.564847 | 3_3:+69198820 | Msa0467770:intron |
| AAAGATTGTCTATCACGGTA+AGG | 0.567215 | 3_3:-69199453 | None:intergenic |
| ATGAACAAAAGGCTCCCAAT+GGG | 0.571218 | 3_3:+69201546 | Msa0467770:CDS |
| CATGAACAAAAGGCTCCCAA+TGG | 0.571401 | 3_3:+69201545 | Msa0467770:CDS |
| ATCTGATACCTCTGCTGATG+AGG | 0.572829 | 3_3:-69199502 | None:intergenic |
| AAATGATGTGAAAGAAGTGC+TGG | 0.573070 | 3_3:-69197603 | None:intergenic |
| CATTCTACTGACCATTATAC+GGG | 0.573420 | 3_3:-69200188 | None:intergenic |
| ATTATCAGAATGAGTTGCAA+AGG | 0.573617 | 3_3:+69198699 | Msa0467770:CDS |
| GGAGGATAAGAAAAGACAGC+AGG | 0.576273 | 3_3:+69201231 | Msa0467770:CDS |
| GCAGTCATGGGAAAAGAAGA+AGG | 0.577231 | 3_3:+69201410 | Msa0467770:intron |
| CACACGTGGAGATTCCTTCA+CGG | 0.578207 | 3_3:+69199729 | Msa0467770:CDS |
| GTTCGCCAAGGGACAGGAGT+AGG | 0.579437 | 3_3:-69198066 | None:intergenic |
| AGGATGGAAGGAAGATACAA+AGG | 0.580566 | 3_3:+69201628 | Msa0467770:CDS |
| CATACTAAGGCAAGAAAAGG+AGG | 0.580847 | 3_3:+69201210 | Msa0467770:CDS |
| TATCCTTCATTAAGGATGGA+AGG | 0.581539 | 3_3:+69201616 | Msa0467770:CDS |
| ATAATGGTCAGTAGAATGCC+AGG | 0.582209 | 3_3:+69200193 | Msa0467770:CDS |
| AACCAATTCAGAGCTGTGCA+AGG | 0.584214 | 3_3:+69198575 | Msa0467770:CDS |
| GCGAACGATCTCTTCCTGGA+CGG | 0.585459 | 3_3:+69198083 | Msa0467770:CDS |
| AAAACAAAATCGGCTGGACA+AGG | 0.586347 | 3_3:+69199012 | Msa0467770:CDS |
| TGCATATGAAAAGTAAAGGT+AGG | 0.587797 | 3_3:-69201669 | None:intergenic |
| AAGACAAGGGTGGCAGAGGT+GGG | 0.593428 | 3_3:-69197532 | None:intergenic |
| TCCTCTAATGGAAATACTGG+AGG | 0.594082 | 3_3:+69201180 | Msa0467770:CDS |
| CAGGAAGAGATCGTTCGCCA+AGG | 0.594511 | 3_3:-69198078 | None:intergenic |
| GAAAGAAGTGCTGGTGTCAG+TGG | 0.596237 | 3_3:-69197594 | None:intergenic |
| GATATCAAGAGCAAAAGAAG+AGG | 0.598084 | 3_3:+69199927 | Msa0467770:CDS |
| AGAAAATGGTCCAGAATGTG+TGG | 0.598316 | 3_3:-69201715 | None:intergenic |
| TAGCACGCGATGAGGAGCGC+TGG | 0.599164 | 3_3:+69199995 | Msa0467770:CDS |
| ACCAATTCAGAGCTGTGCAA+GGG | 0.606025 | 3_3:+69198576 | Msa0467770:CDS |
| TAAGTTCAATCTCCACTGAA+GGG | 0.607846 | 3_3:+69197677 | Msa0467770:five_prime_UTR |
| ATTGAACTTAGATAATGCTA+AGG | 0.612112 | 3_3:-69197664 | None:intergenic |
| AGAAGAGGCTTCGAGCAGGA+AGG | 0.616810 | 3_3:+69199942 | Msa0467770:CDS |
| AGGAAGAGATCGTTCGCCAA+GGG | 0.618807 | 3_3:-69198077 | None:intergenic |
| GCAAAGGCTGTACAATGAGA+AGG | 0.620234 | 3_3:+69198715 | Msa0467770:CDS |
| CGACAGCAAATTGATAACAT+GGG | 0.621693 | 3_3:-69199478 | None:intergenic |
| CCAATGGGTATCCAACAACT+GGG | 0.627456 | 3_3:+69201561 | Msa0467770:CDS |
| CGCACAAATCATTCAAGCTG+GGG | 0.628853 | 3_3:-69198919 | None:intergenic |
| ACTAAGGCAAGAAAAGGAGG+AGG | 0.629609 | 3_3:+69201213 | Msa0467770:CDS |
| ACAAATCATTCAAGCTGGGG+TGG | 0.629680 | 3_3:-69198916 | None:intergenic |
| TGCTCATGAGGAGATTGGAA+TGG | 0.629793 | 3_3:-69199894 | None:intergenic |
| CTGTAATAGGAATCCGCACG+AGG | 0.629927 | 3_3:-69197761 | None:intergenic |
| AATCGATACTCAGTCAGTAG+AGG | 0.634619 | 3_3:+69200133 | Msa0467770:CDS |
| TGGAGAAGACAAGTTCGAGA+GGG | 0.635498 | 3_3:+69197919 | Msa0467770:CDS |
| GCACGAGGTTTCTAGCAATG+TGG | 0.647778 | 3_3:-69197746 | None:intergenic |
| CCTACATAAACTCAATATCA+CGG | 0.648283 | 3_3:+69198970 | Msa0467770:CDS |
| CCCAGCTTGAATGATTTGTG+CGG | 0.650581 | 3_3:+69198920 | Msa0467770:CDS |
| ATAATTAGCCTCATAAACGC+AGG | 0.650670 | 3_3:+69199767 | Msa0467770:CDS |
| GAGTTGAAGGATGATTGAAG+AGG | 0.652754 | 3_3:-69198894 | None:intergenic |
| TTGGAGAAGACAAGTTCGAG+AGG | 0.661670 | 3_3:+69197918 | Msa0467770:CDS |
| TCTGTTCATCCATGCTCATG+AGG | 0.663751 | 3_3:-69199906 | None:intergenic |
| GCTGTCGGCCTCATCAGCAG+AGG | 0.684776 | 3_3:+69199494 | Msa0467770:CDS |
| GCTATTCCAAAAGAAGCAGG+AGG | 0.686349 | 3_3:+69199682 | Msa0467770:CDS |
| AGAAGTGCTGGTGTCAGTGG+AGG | 0.687534 | 3_3:-69197591 | None:intergenic |
| GTGGATGTTAGCACGCGATG+AGG | 0.690361 | 3_3:+69199987 | Msa0467770:CDS |
| CTGGCTAGAAGAATACAGCA+TGG | 0.700880 | 3_3:+69200014 | Msa0467770:CDS |
| TATGGAGCAAGAGTGCCTTG+AGG | 0.711477 | 3_3:+69197958 | Msa0467770:CDS |
| ACATTGCTAGAAACCTCGTG+CGG | 0.751338 | 3_3:+69197748 | Msa0467770:CDS |
| GATATGCAAGAAATCACACG+TGG | 0.775049 | 3_3:+69199715 | Msa0467770:CDS |
| ACATAAACTCAATATCACGG+TGG | 0.787284 | 3_3:+69198973 | Msa0467770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTATTAGTACTTTTATT+TGG | + | chr3_3:69198226-69198245 | Msa0467770:intron | 10.0% |
| !!! | ATACATATTCATTTTTAAAA+TGG | - | chr3_3:69199816-69199835 | None:intergenic | 10.0% |
| !! | ATATATGTATAAATATATAG+GGG | - | chr3_3:69200517-69200536 | None:intergenic | 10.0% |
| !! | CAATATATGTATAAATATAT+AGG | - | chr3_3:69200519-69200538 | None:intergenic | 10.0% |
| !! | TTATACATATATTGTTATAA+AGG | + | chr3_3:69200525-69200544 | Msa0467770:intron | 10.0% |
| !!! | TTAAATTTTTTTGTTATCTT+GGG | - | chr3_3:69200978-69200997 | None:intergenic | 10.0% |
| !! | TTTCTCAAATTTAGATAATT+TGG | + | chr3_3:69197888-69197907 | Msa0467770:intron | 15.0% |
| !! | TTCTCAAATTTAGATAATTT+GGG | + | chr3_3:69197889-69197908 | Msa0467770:intron | 15.0% |
| !! | TTTATGAAGAAAAACAAAAT+CGG | + | chr3_3:69199002-69199021 | Msa0467770:CDS | 15.0% |
| !!! | ATATATGTAAGTCAATTTTT+AGG | - | chr3_3:69199859-69199878 | None:intergenic | 15.0% |
| !!! | AATTGACTTACATATATAAA+AGG | + | chr3_3:69199862-69199881 | Msa0467770:intron | 15.0% |
| !!! | ATTGACTTACATATATAAAA+GGG | + | chr3_3:69199863-69199882 | Msa0467770:intron | 15.0% |
| !!! | CTTAAATTTTTTTGTTATCT+TGG | - | chr3_3:69200979-69200998 | None:intergenic | 15.0% |
| !! | TGATGTAAAAATATTGAAAA+CGG | - | chr3_3:69201028-69201047 | None:intergenic | 15.0% |
| !!! | TTCAATATTTTTACATCAAA+TGG | + | chr3_3:69201030-69201049 | Msa0467770:intron | 15.0% |
| !!! | TGAAATTTTTAATGATGAAG+AGG | - | chr3_3:69197642-69197661 | None:intergenic | 20.0% |
| !!! | ATACTTTGAAAAATAAGACA+TGG | - | chr3_3:69198265-69198284 | None:intergenic | 20.0% |
| !!! | TTTTCATCAAAATAACATTC+TGG | + | chr3_3:69199197-69199216 | Msa0467770:intron | 20.0% |
| !! | TTGACTTACATATATAAAAG+GGG | + | chr3_3:69199864-69199883 | Msa0467770:intron | 20.0% |
| !! | AAGATCAAAACATTATACTT+TGG | + | chr3_3:69200226-69200245 | Msa0467770:intron | 20.0% |
| !! | CTAGAAAATATGTACTTAAA+AGG | + | chr3_3:69200426-69200445 | Msa0467770:intron | 20.0% |
| !! | AGTCTATATAATTCTTCAAA+GGG | + | chr3_3:69200461-69200480 | Msa0467770:intron | 20.0% |
| !!! | TTATTGACTTAATAAAAGCA+TGG | - | chr3_3:69201131-69201150 | None:intergenic | 20.0% |
| !!! | CAGTTTTAAAATATCCTTAA+TGG | + | chr3_3:69201352-69201371 | Msa0467770:intron | 20.0% |
| !! | TAAGAATAAAGATACCATTA+AGG | - | chr3_3:69201369-69201388 | None:intergenic | 20.0% |
| !! | AAAGAAATTTAAGGAGAAAA+TGG | - | chr3_3:69201732-69201751 | None:intergenic | 20.0% |
| !! | ATTCTTGACAAAGAAATTTA+AGG | - | chr3_3:69201741-69201760 | None:intergenic | 20.0% |
| ! | ATTGAACTTAGATAATGCTA+AGG | - | chr3_3:69197667-69197686 | None:intergenic | 25.0% |
| ! | AACATGAGTAGATTATCTTA+TGG | - | chr3_3:69197858-69197877 | None:intergenic | 25.0% |
| !! | TAGATAATTTGGGATGAAAT+TGG | + | chr3_3:69197899-69197918 | Msa0467770:intron | 25.0% |
| ! | GAAAAACATCAATTTCTGTT+AGG | - | chr3_3:69198743-69198762 | None:intergenic | 25.0% |
| ! | GTAACAAAAAATATAAGCGA+CGG | + | chr3_3:69198944-69198963 | Msa0467770:CDS | 25.0% |
| ! | TATAAATTTCACTACACGAA+AGG | + | chr3_3:69199229-69199248 | Msa0467770:intron | 25.0% |
| !!! | ATCAAATCTTTGGAATCTTA+TGG | + | chr3_3:69199425-69199444 | Msa0467770:CDS | 25.0% |
| ! | TTGATCTTATCATATATACC+TGG | - | chr3_3:69200214-69200233 | None:intergenic | 25.0% |
| ! | TAGTAAAAATGACTAGTAGT+TGG | + | chr3_3:69200318-69200337 | Msa0467770:CDS | 25.0% |
| ! | AGTAAAAATGACTAGTAGTT+GGG | + | chr3_3:69200319-69200338 | Msa0467770:CDS | 25.0% |
| !! | TAAAGTTTTCTTGTATGATC+AGG | + | chr3_3:69200355-69200374 | Msa0467770:CDS | 25.0% |
| ! | CAGTCTATATAATTCTTCAA+AGG | + | chr3_3:69200460-69200479 | Msa0467770:intron | 25.0% |
| !! | CATTAGTGTTTTGTATACTA+CGG | - | chr3_3:69200583-69200602 | None:intergenic | 25.0% |
| !! | GTTTTGTCTTCTTTTATATG+CGG | - | chr3_3:69200648-69200667 | None:intergenic | 25.0% |
| ! | TAAAAGAAGACAAAACTTGA+AGG | + | chr3_3:69200652-69200671 | Msa0467770:intron | 25.0% |
| !!! | TAACATTACTTGTTTTACAG+AGG | - | chr3_3:69200896-69200915 | None:intergenic | 25.0% |
| !! | TATTCCTTTAAAAACCATAC+GGG | - | chr3_3:69200928-69200947 | None:intergenic | 25.0% |
| !! | GTATTCCTTTAAAAACCATA+CGG | - | chr3_3:69200929-69200948 | None:intergenic | 25.0% |
| ! | AACATAAATTCAGGAAATCA+AGG | + | chr3_3:69201591-69201610 | Msa0467770:CDS | 25.0% |
| ! | CAAAAAACAAAACTAGAGTT+TGG | - | chr3_3:69201832-69201851 | None:intergenic | 25.0% |
| GTAATGTAAGTGTAAGCTTT+GGG | - | chr3_3:69197513-69197532 | None:intergenic | 30.0% | |
| ! | GGATTTTGCTTAAAAGACAA+GGG | - | chr3_3:69197548-69197567 | None:intergenic | 30.0% |
| ! | TGGATTTTGCTTAAAAGACA+AGG | - | chr3_3:69197549-69197568 | None:intergenic | 30.0% |
| AAGCAAAATCCAATACCAAA+TGG | + | chr3_3:69197557-69197576 | Msa0467770:five_prime_UTR | 30.0% | |
| !! | GTATTTTTGCCATTTGGTAT+TGG | - | chr3_3:69197569-69197588 | None:intergenic | 30.0% |
| !! | CTATTGCTTGTTATTATTCC+TGG | - | chr3_3:69198162-69198181 | None:intergenic | 30.0% |
| AGTATAAAACAGATAAGTCG+AGG | + | chr3_3:69198330-69198349 | Msa0467770:intron | 30.0% | |
| TCATTTACTGTAACGATTGA+GGG | - | chr3_3:69198650-69198669 | None:intergenic | 30.0% | |
| ATTATCAGAATGAGTTGCAA+AGG | + | chr3_3:69198699-69198718 | Msa0467770:CDS | 30.0% | |
| CCTACATAAACTCAATATCA+CGG | + | chr3_3:69198970-69198989 | Msa0467770:CDS | 30.0% | |
| ACTAGATTACTCCTTATGAA+GGG | - | chr3_3:69199117-69199136 | None:intergenic | 30.0% | |
| TACTAGATTACTCCTTATGA+AGG | - | chr3_3:69199118-69199137 | None:intergenic | 30.0% | |
| !!! | CAGATGTTTTTAAGTTCCTT+TGG | - | chr3_3:69199142-69199161 | None:intergenic | 30.0% |
| TGTATCACTGTCATAAGAAT+TGG | - | chr3_3:69199171-69199190 | None:intergenic | 30.0% | |
| !!! | TTGATAGTGTTTTGCCTAAA+TGG | - | chr3_3:69199410-69199429 | None:intergenic | 30.0% |
| GCAAAACACTATCAAATCTT+TGG | + | chr3_3:69199415-69199434 | Msa0467770:CDS | 30.0% | |
| ! | TTCAGTCTTGTAAAAAGTTG+AGG | - | chr3_3:69199615-69199634 | None:intergenic | 30.0% |
| !! | ATGTAAGTCAATTTTTAGGC+TGG | - | chr3_3:69199855-69199874 | None:intergenic | 30.0% |
| TAATGGAAAAAGTTGAGAAG+TGG | + | chr3_3:69199968-69199987 | Msa0467770:CDS | 30.0% | |
| CGTAGTATACAAAACACTAA+TGG | + | chr3_3:69200581-69200600 | Msa0467770:intron | 30.0% | |
| ! | ACTAATGGACCAAAAATTCA+CGG | + | chr3_3:69200596-69200615 | Msa0467770:intron | 30.0% |
| ATGCAAAATGTTTCTTACAG+TGG | - | chr3_3:69200813-69200832 | None:intergenic | 30.0% | |
| GTATCATAAGATATGCTTCT+GGG | - | chr3_3:69201006-69201025 | None:intergenic | 30.0% | |
| !! | AACCTACATAGATGTCATTT+TGG | - | chr3_3:69201161-69201180 | None:intergenic | 30.0% |
| TGGAGGAATATAACATACTA+AGG | + | chr3_3:69201197-69201216 | Msa0467770:CDS | 30.0% | |
| TAACATACTAAGGCAAGAAA+AGG | + | chr3_3:69201207-69201226 | Msa0467770:CDS | 30.0% | |
| TCTTACTTCCTCTTTATGTT+TGG | + | chr3_3:69201384-69201403 | Msa0467770:intron | 30.0% | |
| CATTTAAGCTTCTATTTGGA+AGG | - | chr3_3:69201503-69201522 | None:intergenic | 30.0% | |
| CTTCCAAATAGAAGCTTAAA+TGG | + | chr3_3:69201501-69201520 | Msa0467770:CDS | 30.0% | |
| CTTCCATTTAAGCTTCTATT+TGG | - | chr3_3:69201507-69201526 | None:intergenic | 30.0% | |
| GGATCAAACAACATAAATTC+AGG | + | chr3_3:69201582-69201601 | Msa0467770:CDS | 30.0% | |
| TCAAGGTATATCCTTCATTA+AGG | + | chr3_3:69201608-69201627 | Msa0467770:CDS | 30.0% | |
| TGCATATGAAAAGTAAAGGT+AGG | - | chr3_3:69201672-69201691 | None:intergenic | 30.0% | |
| GTCTTGCATATGAAAAGTAA+AGG | - | chr3_3:69201676-69201695 | None:intergenic | 30.0% | |
| TTTGTATGTTCACAACAGTA+TGG | - | chr3_3:69201800-69201819 | None:intergenic | 30.0% | |
| GAGCATGAGTTAATCAATTT+GGG | - | chr3_3:69201866-69201885 | None:intergenic | 30.0% | |
| GGTAATGTAAGTGTAAGCTT+TGG | - | chr3_3:69197514-69197533 | None:intergenic | 35.0% | |
| ! | TTTTGCTTAAAAGACAAGGG+TGG | - | chr3_3:69197545-69197564 | None:intergenic | 35.0% |
| !! | GAGGTAGTATTTTTGCCATT+TGG | - | chr3_3:69197575-69197594 | None:intergenic | 35.0% |
| ! | AAATGATGTGAAAGAAGTGC+TGG | - | chr3_3:69197606-69197625 | None:intergenic | 35.0% |
| TAAGTTCAATCTCCACTGAA+GGG | + | chr3_3:69197677-69197696 | Msa0467770:five_prime_UTR | 35.0% | |
| !!! | CTTTTTTCCTGTAAACCTCA+AGG | - | chr3_3:69197976-69197995 | None:intergenic | 35.0% |
| TATCGAGTACTAACTGGATA+TGG | - | chr3_3:69198125-69198144 | None:intergenic | 35.0% | |
| GTTTACTATCGAGTACTAAC+TGG | - | chr3_3:69198131-69198150 | None:intergenic | 35.0% | |
| TAATGTGTTAGCTGTGAGAA+AGG | + | chr3_3:69198306-69198325 | Msa0467770:intron | 35.0% | |
| TAACTGTACAGCCAGAAAAA+AGG | + | chr3_3:69198474-69198493 | Msa0467770:intron | 35.0% | |
| AGAATTTCTGCAGAAATTGC+AGG | + | chr3_3:69198608-69198627 | Msa0467770:CDS | 35.0% | |
| CTCATTTACTGTAACGATTG+AGG | - | chr3_3:69198651-69198670 | None:intergenic | 35.0% | |
| TCTGTCACTAAAAAAACTCG+AGG | + | chr3_3:69198676-69198695 | Msa0467770:CDS | 35.0% | |
| GAAGAATACTAACCCCTTAA+TGG | - | chr3_3:69198772-69198791 | None:intergenic | 35.0% | |
| CCGTGATATTGAGTTTATGT+AGG | - | chr3_3:69198973-69198992 | None:intergenic | 35.0% | |
| ACATAAACTCAATATCACGG+TGG | + | chr3_3:69198973-69198992 | Msa0467770:CDS | 35.0% | |
| TGAAGAAAAACAAAATCGGC+TGG | + | chr3_3:69199006-69199025 | Msa0467770:CDS | 35.0% | |
| CTAGATTACTCCTTATGAAG+GGG | - | chr3_3:69199116-69199135 | None:intergenic | 35.0% | |
| ATCACTGTCATAAGAATTGG+AGG | - | chr3_3:69199168-69199187 | None:intergenic | 35.0% | |
| TGCTTATTTAGTCTCGTGAT+AGG | - | chr3_3:69199295-69199314 | None:intergenic | 35.0% | |
| TATCACGAGACTAAATAAGC+AGG | + | chr3_3:69199294-69199313 | Msa0467770:intron | 35.0% | |
| ATCACGAGACTAAATAAGCA+GGG | + | chr3_3:69199295-69199314 | Msa0467770:intron | 35.0% | |
| ACACAGTACTTGAAGCTTAA+AGG | - | chr3_3:69199321-69199340 | None:intergenic | 35.0% | |
| AAAGATTGTCTATCACGGTA+AGG | - | chr3_3:69199456-69199475 | None:intergenic | 35.0% | |
| GGGAAAAAGATTGTCTATCA+CGG | - | chr3_3:69199461-69199480 | None:intergenic | 35.0% | |
| ! | CGACAGCAAATTGATAACAT+GGG | - | chr3_3:69199481-69199500 | None:intergenic | 35.0% |
| !! | CCATGTTATCAATTTGCTGT+CGG | + | chr3_3:69199479-69199498 | Msa0467770:CDS | 35.0% |
| ! | ATAATTAGCCTCATAAACGC+AGG | + | chr3_3:69199767-69199786 | Msa0467770:CDS | 35.0% |
| TAAATTCACCTGCGTTTATG+AGG | - | chr3_3:69199778-69199797 | None:intergenic | 35.0% | |
| GATATCAAGAGCAAAAGAAG+AGG | + | chr3_3:69199927-69199946 | Msa0467770:CDS | 35.0% | |
| CATTCTACTGACCATTATAC+GGG | - | chr3_3:69200191-69200210 | None:intergenic | 35.0% | |
| GCATTCTACTGACCATTATA+CGG | - | chr3_3:69200192-69200211 | None:intergenic | 35.0% | |
| ACATTATACTTTGGACCAAC+TGG | + | chr3_3:69200235-69200254 | Msa0467770:intron | 35.0% | |
| CTGTTCAATGTTGAATGAGA+AGG | - | chr3_3:69200712-69200731 | None:intergenic | 35.0% | |
| !! | CTTGACAATTTGCTACACAA+TGG | + | chr3_3:69200756-69200775 | Msa0467770:intron | 35.0% |
| TTCTTACAGTGGCTTACAAT+AGG | - | chr3_3:69200802-69200821 | None:intergenic | 35.0% | |
| TGTTATAAACTACTCCCGTA+TGG | + | chr3_3:69200911-69200930 | Msa0467770:intron | 35.0% | |
| ! | TACTCCCGTATGGTTTTTAA+AGG | + | chr3_3:69200921-69200940 | Msa0467770:intron | 35.0% |
| GGTATCATAAGATATGCTTC+TGG | - | chr3_3:69201007-69201026 | None:intergenic | 35.0% | |
| ! | ATGGTCTGATGTGTATTTTC+TGG | + | chr3_3:69201084-69201103 | Msa0467770:intron | 35.0% |
| AGCATGGCATCTACTATAAA+AGG | - | chr3_3:69201115-69201134 | None:intergenic | 35.0% | |
| AGCCAAAATGACATCTATGT+AGG | + | chr3_3:69201156-69201175 | Msa0467770:intron | 35.0% | |
| ATCTATGTAGGTTCCTCTAA+TGG | + | chr3_3:69201168-69201187 | Msa0467770:intron | 35.0% | |
| ACTGCAAACCAAACATAAAG+AGG | - | chr3_3:69201395-69201414 | None:intergenic | 35.0% | |
| !! | TTATGTTTGGTTTGCAGTCA+TGG | + | chr3_3:69201397-69201416 | Msa0467770:intron | 35.0% |
| !! | TATGTTTGGTTTGCAGTCAT+GGG | + | chr3_3:69201398-69201417 | Msa0467770:intron | 35.0% |
| TATCTCGCTCAAAAACTACT+TGG | - | chr3_3:69201443-69201462 | None:intergenic | 35.0% | |
| ATTCTCCACACATGAACAAA+AGG | + | chr3_3:69201535-69201554 | Msa0467770:CDS | 35.0% | |
| GGTATATCCTTCATTAAGGA+TGG | + | chr3_3:69201612-69201631 | Msa0467770:CDS | 35.0% | |
| TATCCTTCATTAAGGATGGA+AGG | + | chr3_3:69201616-69201635 | Msa0467770:CDS | 35.0% | |
| ! | TACTTTTCATATGCAAGACG+AGG | + | chr3_3:69201677-69201696 | Msa0467770:CDS | 35.0% |
| CGAGCATGAGTTAATCAATT+TGG | - | chr3_3:69201867-69201886 | None:intergenic | 35.0% | |
| !! | GTTTCTCTTTTAGTTGATGC+TGG | - | chr3_3:69201942-69201961 | None:intergenic | 35.0% |
| CTAAGTTCAATCTCCACTGA+AGG | + | chr3_3:69197676-69197695 | Msa0467770:five_prime_UTR | 40.0% | |
| !! | ACTGAAGGGTACCATCAAAT+GGG | + | chr3_3:69197691-69197710 | Msa0467770:exon | 40.0% |
| ! | TTCTCATTCCAATTGGTGTC+TGG | - | chr3_3:69197723-69197742 | None:intergenic | 40.0% |
| ATTCCTATTACAGGAACTGC+AGG | + | chr3_3:69197771-69197790 | Msa0467770:CDS | 40.0% | |
| CTGGATATGGCTAAGTGAAA+GGG | - | chr3_3:69198112-69198131 | None:intergenic | 40.0% | |
| ACTGGATATGGCTAAGTGAA+AGG | - | chr3_3:69198113-69198132 | None:intergenic | 40.0% | |
| GATAGTAAACAATCAGCACC+AGG | + | chr3_3:69198141-69198160 | Msa0467770:intron | 40.0% | |
| TGTACAGCCAGAAAAAAGGA+CGG | + | chr3_3:69198478-69198497 | Msa0467770:intron | 40.0% | |
| TGCAGAAATTGCAGGAAACT+CGG | + | chr3_3:69198616-69198635 | Msa0467770:CDS | 40.0% | |
| ! | TGTTTTTCACCGCACCATTA+AGG | + | chr3_3:69198755-69198774 | Msa0467770:intron | 40.0% |
| ! | GTTTTTCACCGCACCATTAA+GGG | + | chr3_3:69198756-69198775 | Msa0467770:intron | 40.0% |
| ! | TTTTTCACCGCACCATTAAG+GGG | + | chr3_3:69198757-69198776 | Msa0467770:intron | 40.0% |
| ATACTAACCCCTTAATGGTG+CGG | - | chr3_3:69198767-69198786 | None:intergenic | 40.0% | |
| GAATGAAAGACTACAGCAAG+TGG | + | chr3_3:69198820-69198839 | Msa0467770:intron | 40.0% | |
| GAGTTGAAGGATGATTGAAG+AGG | - | chr3_3:69198897-69198916 | None:intergenic | 40.0% | |
| AAAACAAAATCGGCTGGACA+AGG | + | chr3_3:69199012-69199031 | Msa0467770:CDS | 40.0% | |
| CATACTTACTCCCCTTCATA+AGG | + | chr3_3:69199103-69199122 | Msa0467770:intron | 40.0% | |
| AGGAGTAATCTAGTAGCCAA+AGG | + | chr3_3:69199123-69199142 | Msa0467770:intron | 40.0% | |
| GATTTGCAGCTTCACCATTT+AGG | + | chr3_3:69199393-69199412 | Msa0467770:intron | 40.0% | |
| ! | CCGACAGCAAATTGATAACA+TGG | - | chr3_3:69199482-69199501 | None:intergenic | 40.0% |
| !! | ATCTCTAGAGTTAGACTTCC+TGG | - | chr3_3:69199528-69199547 | None:intergenic | 40.0% |
| TAAGTTAGATACGTACCTGC+TGG | - | chr3_3:69199554-69199573 | None:intergenic | 40.0% | |
| ACAAAAAGCGAGCAAGATGA+AGG | + | chr3_3:69199658-69199677 | Msa0467770:CDS | 40.0% | |
| GATATGCAAGAAATCACACG+TGG | + | chr3_3:69199715-69199734 | Msa0467770:CDS | 40.0% | |
| TTGTTCATTTCTGTCCGTGA+AGG | - | chr3_3:69199746-69199765 | None:intergenic | 40.0% | |
| CATAATCCAAGTGTGCTATC+AGG | + | chr3_3:69200105-69200124 | Msa0467770:intron | 40.0% | |
| AATCGATACTCAGTCAGTAG+AGG | + | chr3_3:69200133-69200152 | Msa0467770:CDS | 40.0% | |
| ATAATGGTCAGTAGAATGCC+AGG | + | chr3_3:69200193-69200212 | Msa0467770:CDS | 40.0% | |
| !!! | TTGCTGCTATTTTTCAGCTC+TGG | + | chr3_3:69200286-69200305 | Msa0467770:intron | 40.0% |
| ATGTGTCTGGTGACATTAGT+GGG | - | chr3_3:69200559-69200578 | None:intergenic | 40.0% | |
| GAAGACAAAACTTGAAGGTG+TGG | + | chr3_3:69200657-69200676 | Msa0467770:intron | 40.0% | |
| TACACTCGCAGTTTCTTTCA+TGG | + | chr3_3:69201065-69201084 | Msa0467770:intron | 40.0% | |
| GGTTCCTCTAATGGAAATAC+TGG | + | chr3_3:69201177-69201196 | Msa0467770:intron | 40.0% | |
| TCCTCTAATGGAAATACTGG+AGG | + | chr3_3:69201180-69201199 | Msa0467770:CDS | 40.0% | |
| TCCTCCAGTATTTCCATTAG+AGG | - | chr3_3:69201184-69201203 | None:intergenic | 40.0% | |
| CATACTAAGGCAAGAAAAGG+AGG | + | chr3_3:69201210-69201229 | Msa0467770:CDS | 40.0% | |
| ATGAACAAAAGGCTCCCAAT+GGG | + | chr3_3:69201546-69201565 | Msa0467770:CDS | 40.0% | |
| ! | TGTTGTTTGATCCCAGTTGT+TGG | - | chr3_3:69201575-69201594 | None:intergenic | 40.0% |
| CTTCCTTCCATCCTTAATGA+AGG | - | chr3_3:69201622-69201641 | None:intergenic | 40.0% | |
| AGGATGGAAGGAAGATACAA+AGG | + | chr3_3:69201628-69201647 | Msa0467770:CDS | 40.0% | |
| TCTATCATGTCCACACATTC+TGG | + | chr3_3:69201705-69201724 | Msa0467770:CDS | 40.0% | |
| AGAAAATGGTCCAGAATGTG+TGG | - | chr3_3:69201718-69201737 | None:intergenic | 40.0% | |
| TTAAAAGACAAGGGTGGCAG+AGG | - | chr3_3:69197539-69197558 | None:intergenic | 45.0% | |
| ! | CATTTGATGGTACCCTTCAG+TGG | - | chr3_3:69197692-69197711 | None:intergenic | 45.0% |
| !! | CACTGAAGGGTACCATCAAA+TGG | + | chr3_3:69197690-69197709 | Msa0467770:exon | 45.0% |
| ! | TCTGGAATGAGCCCATTTGA+TGG | - | chr3_3:69197705-69197724 | None:intergenic | 45.0% |
| GTGGAGCTTCTCATTCCAAT+TGG | - | chr3_3:69197730-69197749 | None:intergenic | 45.0% | |
| ACATTGCTAGAAACCTCGTG+CGG | + | chr3_3:69197748-69197767 | Msa0467770:CDS | 45.0% | |
| TTGCCTGCAGTTCCTGTAAT+AGG | - | chr3_3:69197777-69197796 | None:intergenic | 45.0% | |
| TTGGAGAAGACAAGTTCGAG+AGG | + | chr3_3:69197918-69197937 | Msa0467770:CDS | 45.0% | |
| TGGAGAAGACAAGTTCGAGA+GGG | + | chr3_3:69197919-69197938 | Msa0467770:CDS | 45.0% | |
| AGACAAGTTCGAGAGGGAAA+AGG | + | chr3_3:69197925-69197944 | Msa0467770:CDS | 45.0% | |
| GGAAAAGGTTCTGCTGGATA+TGG | + | chr3_3:69197940-69197959 | Msa0467770:CDS | 45.0% | |
| !! | AAGAGTGCCTTGAGGTTTAC+AGG | + | chr3_3:69197966-69197985 | Msa0467770:CDS | 45.0% |
| ! | AGCTAGTCTGCATCAGAAGT+TGG | + | chr3_3:69198018-69198037 | Msa0467770:CDS | 45.0% |
| GTACAGCCAGAAAAAAGGAC+GGG | + | chr3_3:69198479-69198498 | Msa0467770:intron | 45.0% | |
| ATTCAATCACTCCAGCACTC+CGG | + | chr3_3:69198522-69198541 | Msa0467770:CDS | 45.0% | |
| AACCAATTCAGAGCTGTGCA+AGG | + | chr3_3:69198575-69198594 | Msa0467770:CDS | 45.0% | |
| ACCAATTCAGAGCTGTGCAA+GGG | + | chr3_3:69198576-69198595 | Msa0467770:CDS | 45.0% | |
| GCAAAGGCTGTACAATGAGA+AGG | + | chr3_3:69198715-69198734 | Msa0467770:CDS | 45.0% | |
| ACACAGCTTGTCCACAATCT+TGG | + | chr3_3:69198862-69198881 | Msa0467770:CDS | 45.0% | |
| CACAGCTTGTCCACAATCTT+GGG | + | chr3_3:69198863-69198882 | Msa0467770:CDS | 45.0% | |
| CTTGTCCACAATCTTGGGAA+AGG | + | chr3_3:69198868-69198887 | Msa0467770:CDS | 45.0% | |
| GGAATCCTTTCCCAAGATTG+TGG | - | chr3_3:69198876-69198895 | None:intergenic | 45.0% | |
| ACAAATCATTCAAGCTGGGG+TGG | - | chr3_3:69198919-69198938 | None:intergenic | 45.0% | |
| CGCACAAATCATTCAAGCTG+GGG | - | chr3_3:69198922-69198941 | None:intergenic | 45.0% | |
| CCGCACAAATCATTCAAGCT+GGG | - | chr3_3:69198923-69198942 | None:intergenic | 45.0% | |
| ! | CCCAGCTTGAATGATTTGTG+CGG | + | chr3_3:69198920-69198939 | Msa0467770:CDS | 45.0% |
| TCCGCACAAATCATTCAAGC+TGG | - | chr3_3:69198924-69198943 | None:intergenic | 45.0% | |
| ATCTGATACCTCTGCTGATG+AGG | - | chr3_3:69199505-69199524 | None:intergenic | 45.0% | |
| ! | AACTCTAGAGATTGTCCAGC+AGG | + | chr3_3:69199536-69199555 | Msa0467770:CDS | 45.0% |
| GGAGCTATTCCAAAAGAAGC+AGG | + | chr3_3:69199679-69199698 | Msa0467770:CDS | 45.0% | |
| GCTATTCCAAAAGAAGCAGG+AGG | + | chr3_3:69199682-69199701 | Msa0467770:CDS | 45.0% | |
| TGCTCATGAGGAGATTGGAA+TGG | - | chr3_3:69199897-69199916 | None:intergenic | 45.0% | |
| TTCCAATCTCCTCATGAGCA+TGG | + | chr3_3:69199897-69199916 | Msa0467770:CDS | 45.0% | |
| ATCCATGCTCATGAGGAGAT+TGG | - | chr3_3:69199902-69199921 | None:intergenic | 45.0% | |
| TCTGTTCATCCATGCTCATG+AGG | - | chr3_3:69199909-69199928 | None:intergenic | 45.0% | |
| TTCGAGCAGGAAGGCTATAA+TGG | + | chr3_3:69199951-69199970 | Msa0467770:CDS | 45.0% | |
| CTGGCTAGAAGAATACAGCA+TGG | + | chr3_3:69200014-69200033 | Msa0467770:CDS | 45.0% | |
| TCTCATCCTGATAGCACACT+TGG | - | chr3_3:69200114-69200133 | None:intergenic | 45.0% | |
| TGTGTCTGGTGACATTAGTG+GGG | - | chr3_3:69200558-69200577 | None:intergenic | 45.0% | |
| CATGTGTCTGGTGACATTAG+TGG | - | chr3_3:69200560-69200579 | None:intergenic | 45.0% | |
| TGTATACTACGGCATGTGTC+TGG | - | chr3_3:69200572-69200591 | None:intergenic | 45.0% | |
| !! | GAGCTTGCTCCGTGAATTTT+TGG | - | chr3_3:69200608-69200627 | None:intergenic | 45.0% |
| !! | TGTTATCTTGGGAAGTGCTG+AGG | - | chr3_3:69200967-69200986 | None:intergenic | 45.0% |
| ACTAAGGCAAGAAAAGGAGG+AGG | + | chr3_3:69201213-69201232 | Msa0467770:CDS | 45.0% | |
| GGAGGATAAGAAAAGACAGC+AGG | + | chr3_3:69201231-69201250 | Msa0467770:CDS | 45.0% | |
| GCAGTCATGGGAAAAGAAGA+AGG | + | chr3_3:69201410-69201429 | Msa0467770:intron | 45.0% | |
| GCTCAAAAACTACTTGGCTC+TGG | - | chr3_3:69201437-69201456 | None:intergenic | 45.0% | |
| CATGAACAAAAGGCTCCCAA+TGG | + | chr3_3:69201545-69201564 | Msa0467770:CDS | 45.0% | |
| CCAGTTGTTGGATACCCATT+GGG | - | chr3_3:69201563-69201582 | None:intergenic | 45.0% | |
| CCAATGGGTATCCAACAACT+GGG | + | chr3_3:69201561-69201580 | Msa0467770:CDS | 45.0% | |
| !! | AATATATGTATAAATATATA+GGG | - | chr3_3:69200518-69200537 | None:intergenic | 5.0% |
| !! | GAAAGAAGTGCTGGTGTCAG+TGG | - | chr3_3:69197597-69197616 | None:intergenic | 50.0% |
| GGCTCATTCCAGACACCAAT+TGG | + | chr3_3:69197712-69197731 | Msa0467770:CDS | 50.0% | |
| !! | GCACGAGGTTTCTAGCAATG+TGG | - | chr3_3:69197749-69197768 | None:intergenic | 50.0% |
| CTGTAATAGGAATCCGCACG+AGG | - | chr3_3:69197764-69197783 | None:intergenic | 50.0% | |
| CTCGTGCGGATTCCTATTAC+AGG | + | chr3_3:69197762-69197781 | Msa0467770:CDS | 50.0% | |
| !! | TATGGAGCAAGAGTGCCTTG+AGG | + | chr3_3:69197958-69197977 | Msa0467770:CDS | 50.0% |
| TCAGAAGTTGGCTGAAGCAG+AGG | + | chr3_3:69198030-69198049 | Msa0467770:CDS | 50.0% | |
| AGGAAGAGATCGTTCGCCAA+GGG | - | chr3_3:69198080-69198099 | None:intergenic | 50.0% | |
| !!! | AGCGTACCCGTCCTTTTTTC+TGG | - | chr3_3:69198488-69198507 | None:intergenic | 50.0% |
| TTCAATCACTCCAGCACTCC+GGG | + | chr3_3:69198523-69198542 | Msa0467770:CDS | 50.0% | |
| CTTTCCTCAAGCGCATTTCC+CGG | - | chr3_3:69198544-69198563 | None:intergenic | 50.0% | |
| !! | TCCCTTGCACAGCTCTGAAT+TGG | - | chr3_3:69198580-69198599 | None:intergenic | 50.0% |
| !! | TCAGCAGAGGTATCAGATCC+AGG | + | chr3_3:69199507-69199526 | Msa0467770:CDS | 50.0% |
| ! | CCAGTTCCTCCTGCTTCTTT+TGG | - | chr3_3:69199691-69199710 | None:intergenic | 50.0% |
| CCAAAAGAAGCAGGAGGAAC+TGG | + | chr3_3:69199688-69199707 | Msa0467770:CDS | 50.0% | |
| CACACGTGGAGATTCCTTCA+CGG | + | chr3_3:69199729-69199748 | Msa0467770:CDS | 50.0% | |
| CAAAAGAAGAGGCTTCGAGC+AGG | + | chr3_3:69199938-69199957 | Msa0467770:CDS | 50.0% | |
| AGCTGAACGTGCCCGTATAA+TGG | + | chr3_3:69200177-69200196 | Msa0467770:CDS | 50.0% | |
| CTGTGTGATTGCTCTCCAGT+TGG | - | chr3_3:69200253-69200272 | None:intergenic | 50.0% | |
| GTGTCTGGTGACATTAGTGG+GGG | - | chr3_3:69200557-69200576 | None:intergenic | 50.0% | |
| !! | ATTTGGAAGGCGTCTACTGC+TGG | - | chr3_3:69201490-69201509 | None:intergenic | 50.0% |
| ! | GGGAGCCTTTTGTTCATGTG+TGG | - | chr3_3:69201543-69201562 | None:intergenic | 50.0% |
| CCCAATGGGTATCCAACAAC+TGG | + | chr3_3:69201560-69201579 | Msa0467770:CDS | 50.0% | |
| CCCAGTTGTTGGATACCCAT+TGG | - | chr3_3:69201564-69201583 | None:intergenic | 50.0% | |
| AAGACAAGGGTGGCAGAGGT+GGG | - | chr3_3:69197535-69197554 | None:intergenic | 55.0% | |
| AAAGACAAGGGTGGCAGAGG+TGG | - | chr3_3:69197536-69197555 | None:intergenic | 55.0% | |
| !! | AGAAGTGCTGGTGTCAGTGG+AGG | - | chr3_3:69197594-69197613 | None:intergenic | 55.0% |
| CGAGAGGGAAAAGGTTCTGC+TGG | + | chr3_3:69197934-69197953 | Msa0467770:CDS | 55.0% | |
| ACTCACCTACTCCTGTCCCT+TGG | + | chr3_3:69198061-69198080 | Msa0467770:CDS | 55.0% | |
| CAGGAAGAGATCGTTCGCCA+AGG | - | chr3_3:69198081-69198100 | None:intergenic | 55.0% | |
| CTTGGCGAACGATCTCTTCC+TGG | + | chr3_3:69198079-69198098 | Msa0467770:CDS | 55.0% | |
| GCGAACGATCTCTTCCTGGA+CGG | + | chr3_3:69198083-69198102 | Msa0467770:CDS | 55.0% | |
| CGAACGATCTCTTCCTGGAC+GGG | + | chr3_3:69198084-69198103 | Msa0467770:CDS | 55.0% | |
| !! | AAGTGAAAGGGTACCCGTCC+AGG | - | chr3_3:69198100-69198119 | None:intergenic | 55.0% |
| TCAAGCTGGGGTGGAGTTGA+AGG | - | chr3_3:69198910-69198929 | None:intergenic | 55.0% | |
| AGAAGAGGCTTCGAGCAGGA+AGG | + | chr3_3:69199942-69199961 | Msa0467770:CDS | 55.0% | |
| GTGGATGTTAGCACGCGATG+AGG | + | chr3_3:69199987-69200006 | Msa0467770:CDS | 55.0% | |
| TGGTGACATTAGTGGGGGCT+AGG | - | chr3_3:69200552-69200571 | None:intergenic | 55.0% | |
| GTTCGCCAAGGGACAGGAGT+AGG | - | chr3_3:69198069-69198088 | None:intergenic | 60.0% | |
| GAGATCGTTCGCCAAGGGAC+AGG | - | chr3_3:69198075-69198094 | None:intergenic | 60.0% | |
| AAGCGCATTTCCCGGAGTGC+TGG | - | chr3_3:69198536-69198555 | None:intergenic | 60.0% | |
| CACTCCGGGAAATGCGCTTG+AGG | + | chr3_3:69198537-69198556 | Msa0467770:CDS | 60.0% | |
| AGGCGTCTACTGCTGGTGCT+TGG | - | chr3_3:69201483-69201502 | None:intergenic | 60.0% | |
| GCTGTCGGCCTCATCAGCAG+AGG | + | chr3_3:69199494-69199513 | Msa0467770:CDS | 65.0% | |
| ! | TAGCACGCGATGAGGAGCGC+TGG | + | chr3_3:69199995-69200014 | Msa0467770:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 69197488 | 69201979 | 69197488 | ID=Msa0467770;Name=Msa0467770 |
| chr3_3 | mRNA | 69197488 | 69201979 | 69197488 | ID=Msa0467770-mRNA-1;Parent=Msa0467770;Name=Msa0467770-mRNA-1;_AED=0.09;_eAED=0.09;_QI=221|1|1|1|1|1|11|236|595 |
| chr3_3 | exon | 69197488 | 69197792 | 69197488 | ID=Msa0467770-mRNA-1:exon:16302;Parent=Msa0467770-mRNA-1 |
| chr3_3 | exon | 69197902 | 69198105 | 69197902 | ID=Msa0467770-mRNA-1:exon:16303;Parent=Msa0467770-mRNA-1 |
| chr3_3 | exon | 69198485 | 69198736 | 69198485 | ID=Msa0467770-mRNA-1:exon:16304;Parent=Msa0467770-mRNA-1 |
| chr3_3 | exon | 69198821 | 69199033 | 69198821 | ID=Msa0467770-mRNA-1:exon:16305;Parent=Msa0467770-mRNA-1 |
| chr3_3 | exon | 69199402 | 69199557 | 69199402 | ID=Msa0467770-mRNA-1:exon:16306;Parent=Msa0467770-mRNA-1 |
| chr3_3 | exon | 69199629 | 69199788 | 69199629 | ID=Msa0467770-mRNA-1:exon:16307;Parent=Msa0467770-mRNA-1 |
| chr3_3 | exon | 69199884 | 69200035 | 69199884 | ID=Msa0467770-mRNA-1:exon:16308;Parent=Msa0467770-mRNA-1 |
| chr3_3 | exon | 69200127 | 69200214 | 69200127 | ID=Msa0467770-mRNA-1:exon:16309;Parent=Msa0467770-mRNA-1 |
| chr3_3 | exon | 69200303 | 69200376 | 69200303 | ID=Msa0467770-mRNA-1:exon:16310;Parent=Msa0467770-mRNA-1 |
| chr3_3 | exon | 69201178 | 69201252 | 69201178 | ID=Msa0467770-mRNA-1:exon:16311;Parent=Msa0467770-mRNA-1 |
| chr3_3 | exon | 69201414 | 69201979 | 69201414 | ID=Msa0467770-mRNA-1:exon:16312;Parent=Msa0467770-mRNA-1 |
| chr3_3 | five_prime_UTR | 69197488 | 69197708 | 69197488 | ID=Msa0467770-mRNA-1:five_prime_utr;Parent=Msa0467770-mRNA-1 |
| chr3_3 | CDS | 69197709 | 69197792 | 69197709 | ID=Msa0467770-mRNA-1:cds;Parent=Msa0467770-mRNA-1 |
| chr3_3 | CDS | 69197902 | 69198105 | 69197902 | ID=Msa0467770-mRNA-1:cds;Parent=Msa0467770-mRNA-1 |
| chr3_3 | CDS | 69198485 | 69198736 | 69198485 | ID=Msa0467770-mRNA-1:cds;Parent=Msa0467770-mRNA-1 |
| chr3_3 | CDS | 69198821 | 69199033 | 69198821 | ID=Msa0467770-mRNA-1:cds;Parent=Msa0467770-mRNA-1 |
| chr3_3 | CDS | 69199402 | 69199557 | 69199402 | ID=Msa0467770-mRNA-1:cds;Parent=Msa0467770-mRNA-1 |
| chr3_3 | CDS | 69199629 | 69199788 | 69199629 | ID=Msa0467770-mRNA-1:cds;Parent=Msa0467770-mRNA-1 |
| chr3_3 | CDS | 69199884 | 69200035 | 69199884 | ID=Msa0467770-mRNA-1:cds;Parent=Msa0467770-mRNA-1 |
| chr3_3 | CDS | 69200127 | 69200214 | 69200127 | ID=Msa0467770-mRNA-1:cds;Parent=Msa0467770-mRNA-1 |
| chr3_3 | CDS | 69200303 | 69200376 | 69200303 | ID=Msa0467770-mRNA-1:cds;Parent=Msa0467770-mRNA-1 |
| chr3_3 | CDS | 69201178 | 69201252 | 69201178 | ID=Msa0467770-mRNA-1:cds;Parent=Msa0467770-mRNA-1 |
| chr3_3 | CDS | 69201414 | 69201743 | 69201414 | ID=Msa0467770-mRNA-1:cds;Parent=Msa0467770-mRNA-1 |
| chr3_3 | three_prime_UTR | 69201744 | 69201979 | 69201744 | ID=Msa0467770-mRNA-1:three_prime_utr;Parent=Msa0467770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
