Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514170 | XP_003601793.2 | 97.479 | 595 | 15 | 0 | 1 | 595 | 1 | 595 | 0.0 | 1195 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514170 | sp|Q9C7G0|MA658_ARATH | 62.766 | 564 | 203 | 4 | 1 | 562 | 1 | 559 | 0.0 | 712 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514170 | G7JC01 | 97.479 | 595 | 15 | 0 | 1 | 595 | 1 | 595 | 0.0 | 1195 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0373310 | Msa0514170 | 0.950390 | 1.816844e-108 | -8.615850e-47 |
| Msa0392380 | Msa0514170 | 0.809220 | 2.107313e-50 | -8.615850e-47 |
| Msa0421890 | Msa0514170 | 0.959760 | 8.476335e-118 | -8.615850e-47 |
| Msa0425170 | Msa0514170 | 0.802055 | 6.727186e-49 | -8.615850e-47 |
| Msa0440320 | Msa0514170 | 0.813369 | 2.651160e-51 | -8.615850e-47 |
| Msa0467770 | Msa0514170 | 0.953931 | 9.208019e-112 | -8.615850e-47 |
| Msa0243600 | Msa0514170 | 0.816654 | 4.947410e-52 | -8.615850e-47 |
| Msa0280690 | Msa0514170 | 0.809442 | 1.888132e-50 | -8.615850e-47 |
| Msa0319940 | Msa0514170 | 0.810835 | 9.458435e-51 | -8.615850e-47 |
| Msa0487500 | Msa0514170 | 0.813241 | 2.827344e-51 | -8.615850e-47 |
| Msa0514170 | Msa0968350 | 0.804922 | 1.712156e-49 | -8.615850e-47 |
| Msa0514170 | Msa1078930 | 0.807215 | 5.634921e-50 | -8.615850e-47 |
| Msa0514170 | Msa1123930 | 0.810314 | 1.225896e-50 | -8.615850e-47 |
| Msa0514170 | Msa1340700 | 0.808809 | 2.581098e-50 | -8.615850e-47 |
| Msa0514170 | Msa1426070 | 0.809664 | 1.692107e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514170 | MtrunA17_Chr3g0122591 | 96.186 | 603 | 15 | 1 | 1 | 595 | 1 | 603 | 0.0 | 1187 |
| Msa0514170 | MtrunA17_Chr5g0444881 | 46.167 | 587 | 291 | 8 | 17 | 595 | 13 | 582 | 3.48e-165 | 483 |
| Msa0514170 | MtrunA17_Chr6g0476051 | 45.508 | 512 | 266 | 8 | 17 | 524 | 14 | 516 | 5.00e-140 | 423 |
| Msa0514170 | MtrunA17_Chr1g0188201 | 40.728 | 577 | 318 | 8 | 17 | 588 | 13 | 570 | 2.63e-131 | 401 |
| Msa0514170 | MtrunA17_Chr1g0164981 | 40.614 | 554 | 302 | 8 | 1 | 532 | 1 | 549 | 4.00e-131 | 397 |
| Msa0514170 | MtrunA17_Chr8g0354131 | 40.253 | 554 | 305 | 8 | 18 | 565 | 13 | 546 | 2.88e-126 | 383 |
| Msa0514170 | MtrunA17_Chr7g0245851 | 39.448 | 507 | 297 | 5 | 8 | 512 | 355 | 853 | 5.15e-107 | 345 |
| Msa0514170 | MtrunA17_Chr8g0345241 | 36.981 | 530 | 287 | 12 | 4 | 520 | 7 | 502 | 2.41e-87 | 280 |
| Msa0514170 | MtrunA17_Chr4g0039561 | 57.692 | 52 | 22 | 0 | 28 | 79 | 144 | 195 | 7.04e-14 | 70.9 |
| Msa0514170 | MtrunA17_Chr5g0410361 | 43.023 | 86 | 46 | 2 | 241 | 326 | 11 | 93 | 1.40e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514170 | AT1G27920.1 | 62.766 | 564 | 203 | 4 | 1 | 562 | 1 | 559 | 0.0 | 712 |
| Msa0514170 | AT1G27920.2 | 68.550 | 407 | 125 | 2 | 1 | 405 | 1 | 406 | 0.0 | 575 |
| Msa0514170 | AT4G26760.1 | 46.595 | 558 | 279 | 6 | 15 | 559 | 11 | 562 | 5.87e-161 | 473 |
| Msa0514170 | AT5G55230.3 | 48.519 | 540 | 264 | 6 | 12 | 544 | 8 | 540 | 9.97e-161 | 472 |
| Msa0514170 | AT5G55230.1 | 48.519 | 540 | 264 | 6 | 12 | 544 | 8 | 540 | 9.97e-161 | 472 |
| Msa0514170 | AT5G55230.2 | 46.046 | 569 | 264 | 7 | 12 | 544 | 8 | 569 | 3.29e-154 | 457 |
| Msa0514170 | AT2G01910.1 | 41.734 | 496 | 280 | 4 | 18 | 506 | 16 | 509 | 2.40e-134 | 405 |
| Msa0514170 | AT2G38720.1 | 43.825 | 502 | 272 | 5 | 23 | 522 | 12 | 505 | 2.03e-133 | 401 |
| Msa0514170 | AT1G14690.1 | 39.734 | 526 | 304 | 5 | 18 | 532 | 16 | 539 | 9.09e-130 | 393 |
| Msa0514170 | AT1G14690.2 | 39.734 | 526 | 304 | 5 | 18 | 532 | 16 | 539 | 9.09e-130 | 393 |
| Msa0514170 | AT5G51600.1 | 43.182 | 528 | 286 | 5 | 16 | 538 | 12 | 530 | 1.05e-126 | 389 |
| Msa0514170 | AT2G01910.2 | 41.064 | 470 | 268 | 4 | 44 | 506 | 1 | 468 | 5.62e-124 | 377 |
| Msa0514170 | AT3G60840.1 | 37.643 | 526 | 312 | 7 | 16 | 538 | 12 | 524 | 9.60e-110 | 344 |
| Msa0514170 | AT5G62250.2 | 38.258 | 528 | 313 | 7 | 12 | 530 | 2 | 525 | 3.68e-97 | 307 |
| Msa0514170 | AT5G62250.1 | 38.258 | 528 | 313 | 7 | 12 | 530 | 2 | 525 | 3.68e-97 | 307 |
Find 152 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCAAATTTAGATAATT+TGG | 0.060973 | 3_4:+64850059 | Msa0514170:intron |
| ATTCTTGACAAAGAAATTTA+AGG | 0.140374 | 3_4:-64853908 | None:intergenic |
| CGAGCATGAGTTAATCAATT+TGG | 0.157195 | 3_4:-64854034 | None:intergenic |
| CCAGTTCCTCCTGCTTCTTT+TGG | 0.184387 | 3_4:-64851859 | None:intergenic |
| CTTCCATTTAAGCTTCTATT+TGG | 0.209135 | 3_4:-64853674 | None:intergenic |
| ATCAAATCTTTGGAATCTTA+TGG | 0.243314 | 3_4:+64851596 | Msa0514170:CDS |
| TAGATAATTTGGGATGAAAT+TGG | 0.251538 | 3_4:+64850070 | Msa0514170:intron |
| GCATTCTACTGACCATTATA+CGG | 0.261311 | 3_4:-64852360 | None:intergenic |
| GCAAAACACTATCAAATCTT+TGG | 0.266126 | 3_4:+64851586 | Msa0514170:CDS |
| TCCTCCAGTATTTCCATTAG+AGG | 0.271034 | 3_4:-64853351 | None:intergenic |
| TTGCCTGCAGTTCCTGTAAT+AGG | 0.273628 | 3_4:-64849945 | None:intergenic |
| CTTCCAAATAGAAGCTTAAA+TGG | 0.280847 | 3_4:+64853671 | Msa0514170:CDS |
| TCTATCATGTCCACACATTC+TGG | 0.292323 | 3_4:+64853875 | Msa0514170:CDS |
| AAAGAAATTTAAGGAGAAAA+TGG | 0.296087 | 3_4:-64853899 | None:intergenic |
| AAGAGTGCCTTGAGGTTTAC+AGG | 0.300573 | 3_4:+64850137 | Msa0514170:CDS |
| ATCTCTAGAGTTAGACTTCC+TGG | 0.307135 | 3_4:-64851696 | None:intergenic |
| GATTTGCAGCTTCACCATTT+AGG | 0.323978 | 3_4:+64851564 | Msa0514170:intron |
| CTTTCCTCAAGCGCATTTCC+CGG | 0.325728 | 3_4:-64850712 | None:intergenic |
| TCAAGGTATATCCTTCATTA+AGG | 0.332212 | 3_4:+64853778 | Msa0514170:CDS |
| GGAAAAGGTTCTGCTGGATA+TGG | 0.335210 | 3_4:+64850111 | Msa0514170:CDS |
| TCCCTTGCACAGCTCTGAAT+TGG | 0.337961 | 3_4:-64850748 | None:intergenic |
| TTCTCAAATTTAGATAATTT+GGG | 0.339890 | 3_4:+64850060 | Msa0514170:intron |
| CCCAATGGGTATCCAACAAC+TGG | 0.354408 | 3_4:+64853730 | Msa0514170:CDS |
| GAATCCATCAACAAGCAAAA+TGG | 0.363080 | 3_4:-64854131 | None:intergenic |
| GAGCATGAGTTAATCAATTT+GGG | 0.364598 | 3_4:-64854033 | None:intergenic |
| ATCTATGTAGGTTCCTCTAA+TGG | 0.370668 | 3_4:+64853338 | Msa0514170:intron |
| ACACAGCTTGTCCACAATCT+TGG | 0.385265 | 3_4:+64851033 | Msa0514170:CDS |
| AGCTGAACGTGCCCGTATAA+TGG | 0.385407 | 3_4:+64852348 | Msa0514170:CDS |
| CTCGTGCGGATTCCTATTAC+AGG | 0.385809 | 3_4:+64849933 | Msa0514170:CDS |
| TTTGTATGTTCACAACAGTA+TGG | 0.401421 | 3_4:-64853967 | None:intergenic |
| CACTGAAGGGTACCATCAAA+TGG | 0.402116 | 3_4:+64849861 | Msa0514170:exon |
| CTTGGCGAACGATCTCTTCC+TGG | 0.402388 | 3_4:+64850250 | Msa0514170:CDS |
| GGCTCATTCCAGACACCAAT+TGG | 0.407854 | 3_4:+64849883 | Msa0514170:CDS |
| CCAAAAGAAGCAGGAGGAAC+TGG | 0.410765 | 3_4:+64851859 | Msa0514170:CDS |
| GGTTCCTCTAATGGAAATAC+TGG | 0.415098 | 3_4:+64853347 | Msa0514170:intron |
| AGAATTTCTGCAGAAATTGC+AGG | 0.416093 | 3_4:+64850779 | Msa0514170:CDS |
| CTCATTTACTGTAACGATTG+AGG | 0.422856 | 3_4:-64850819 | None:intergenic |
| CACAGCTTGTCCACAATCTT+GGG | 0.424296 | 3_4:+64851034 | Msa0514170:CDS |
| TGTTGTTTGATCCCAGTTGT+TGG | 0.428436 | 3_4:-64853742 | None:intergenic |
| TTCGAGCAGGAAGGCTATAA+TGG | 0.429177 | 3_4:+64852122 | Msa0514170:CDS |
| GTAATGTAAGTGTAAGCTTT+GGG | 0.434845 | 3_4:-64849681 | None:intergenic |
| GGATCAAACAACATAAATTC+AGG | 0.435219 | 3_4:+64853752 | Msa0514170:CDS |
| TTCTCATTCCAATTGGTGTC+TGG | 0.435378 | 3_4:-64849891 | None:intergenic |
| GGTAATGTAAGTGTAAGCTT+TGG | 0.437291 | 3_4:-64849682 | None:intergenic |
| AAGCGCATTTCCCGGAGTGC+TGG | 0.442192 | 3_4:-64850704 | None:intergenic |
| TCAAGCTGGGGTGGAGTTGA+AGG | 0.444352 | 3_4:-64851078 | None:intergenic |
| TAAATTCACCTGCGTTTATG+AGG | 0.449706 | 3_4:-64851946 | None:intergenic |
| ATTTGGAAGGCGTCTACTGC+TGG | 0.453067 | 3_4:-64853657 | None:intergenic |
| TCATTTACTGTAACGATTGA+GGG | 0.470212 | 3_4:-64850818 | None:intergenic |
| AACATAAATTCAGGAAATCA+AGG | 0.473671 | 3_4:+64853761 | Msa0514170:CDS |
| TTCAATCACTCCAGCACTCC+GGG | 0.473685 | 3_4:+64850694 | Msa0514170:CDS |
| ATCCATGCTCATGAGGAGAT+TGG | 0.476554 | 3_4:-64852070 | None:intergenic |
| CCAGTTGTTGGATACCCATT+GGG | 0.477027 | 3_4:-64853730 | None:intergenic |
| AAGTGAAAGGGTACCCGTCC+AGG | 0.477643 | 3_4:-64850268 | None:intergenic |
| CTTCCTTCCATCCTTAATGA+AGG | 0.477715 | 3_4:-64853789 | None:intergenic |
| CCCAGTTGTTGGATACCCAT+TGG | 0.479704 | 3_4:-64853731 | None:intergenic |
| GTGGAGCTTCTCATTCCAAT+TGG | 0.480272 | 3_4:-64849898 | None:intergenic |
| AAGCAAAATCCAATACCAAA+TGG | 0.481519 | 3_4:+64849728 | Msa0514170:five_prime_UTR |
| TCCGCACAAATCATTCAAGC+TGG | 0.482056 | 3_4:-64851092 | None:intergenic |
| CATTTAAGCTTCTATTTGGA+AGG | 0.482390 | 3_4:-64853670 | None:intergenic |
| TAACATACTAAGGCAAGAAA+AGG | 0.486755 | 3_4:+64853377 | Msa0514170:CDS |
| ATTCTCCACACATGAACAAA+AGG | 0.488062 | 3_4:+64853705 | Msa0514170:CDS |
| AACTCTAGAGATTGTCCAGC+AGG | 0.488428 | 3_4:+64851707 | Msa0514170:CDS |
| TGGAGGAATATAACATACTA+AGG | 0.491206 | 3_4:+64853367 | Msa0514170:CDS |
| AGCTAGTCTGCATCAGAAGT+TGG | 0.492163 | 3_4:+64850189 | Msa0514170:CDS |
| CCATGTTATCAATTTGCTGT+CGG | 0.492212 | 3_4:+64851650 | Msa0514170:CDS |
| GAGATCGTTCGCCAAGGGAC+AGG | 0.492757 | 3_4:-64850243 | None:intergenic |
| CCGTGATATTGAGTTTATGT+AGG | 0.502204 | 3_4:-64851141 | None:intergenic |
| TGCAGAAATTGCAGGAAACT+CGG | 0.505191 | 3_4:+64850787 | Msa0514170:CDS |
| AAAGACAAGGGTGGCAGAGG+TGG | 0.506369 | 3_4:-64849704 | None:intergenic |
| TCAGCAGAGGTATCAGATCC+AGG | 0.511058 | 3_4:+64851678 | Msa0514170:CDS |
| CGAGAGGGAAAAGGTTCTGC+TGG | 0.520433 | 3_4:+64850105 | Msa0514170:CDS |
| CCGACAGCAAATTGATAACA+TGG | 0.522933 | 3_4:-64851650 | None:intergenic |
| TTGTTCATTTCTGTCTGTGA+AGG | 0.524722 | 3_4:-64851914 | None:intergenic |
| ACTCACCTACTCCTGTCCCT+TGG | 0.525401 | 3_4:+64850232 | Msa0514170:CDS |
| AGGCGTCTACTGCTGGTGCT+TGG | 0.527547 | 3_4:-64853650 | None:intergenic |
| AGACAAGTTCGAGAGGGAAA+AGG | 0.527902 | 3_4:+64850096 | Msa0514170:CDS |
| GGTATATCCTTCATTAAGGA+TGG | 0.530437 | 3_4:+64853782 | Msa0514170:CDS |
| GGAATCCTTTCCCAAGATTG+TGG | 0.535210 | 3_4:-64851044 | None:intergenic |
| CTAAGTTCAATCTCCACTGA+AGG | 0.536725 | 3_4:+64849847 | Msa0514170:five_prime_UTR |
| TCAGAAGTTGGCTGAAGCAG+AGG | 0.538192 | 3_4:+64850201 | Msa0514170:CDS |
| CCGCACAAATCATTCAAGCT+GGG | 0.539404 | 3_4:-64851091 | None:intergenic |
| TCTGGAATGAGCCCATTTGA+TGG | 0.540651 | 3_4:-64849873 | None:intergenic |
| ACTGAAGGGTACCATCAAAT+GGG | 0.548310 | 3_4:+64849862 | Msa0514170:exon |
| CACTCCGGGAAATGCGCTTG+AGG | 0.548570 | 3_4:+64850708 | Msa0514170:CDS |
| CAAAAGAAGAGGCTTCGAGC+AGG | 0.554081 | 3_4:+64852109 | Msa0514170:CDS |
| CGAACGATCTCTTCCTGGAC+GGG | 0.556832 | 3_4:+64850255 | Msa0514170:CDS |
| ATTCAATCACTCCAGCACTC+CGG | 0.557459 | 3_4:+64850693 | Msa0514170:CDS |
| TTCCAATCTCCTCATGAGCA+TGG | 0.558030 | 3_4:+64852068 | Msa0514170:CDS |
| CATTTGATGGTACCCTTCAG+TGG | 0.559511 | 3_4:-64849860 | None:intergenic |
| ATTCCTATTACAGGAACTGC+AGG | 0.560645 | 3_4:+64849942 | Msa0514170:CDS |
| GGAGCTATTCCAAAAGAAGC+AGG | 0.561788 | 3_4:+64851850 | Msa0514170:CDS |
| TTAAAAGACAAGGGTGGCAG+AGG | 0.562239 | 3_4:-64849707 | None:intergenic |
| CTTGTCCACAATCTTGGGAA+AGG | 0.564387 | 3_4:+64851039 | Msa0514170:CDS |
| GTCTTGCATATGAAAAGTAA+AGG | 0.564831 | 3_4:-64853843 | None:intergenic |
| GAATGAAAGACTACAGCAAG+TGG | 0.564847 | 3_4:+64850991 | Msa0514170:intron |
| AAAGATTGTCTATCACGGTA+AGG | 0.567215 | 3_4:-64851624 | None:intergenic |
| ATGAACAAAAGGCTCCCAAT+GGG | 0.571218 | 3_4:+64853716 | Msa0514170:CDS |
| CATGAACAAAAGGCTCCCAA+TGG | 0.571401 | 3_4:+64853715 | Msa0514170:CDS |
| ATCTGATACCTCTGCTGATG+AGG | 0.572829 | 3_4:-64851673 | None:intergenic |
| CATTCTACTGACCATTATAC+GGG | 0.573420 | 3_4:-64852359 | None:intergenic |
| ATTATCAGAATGAGTTGCAA+AGG | 0.573617 | 3_4:+64850870 | Msa0514170:CDS |
| AAATGATGTGAAAGAAGTGT+TGG | 0.574676 | 3_4:-64849774 | None:intergenic |
| GGAGGATAAGAAAAGACAGC+AGG | 0.576273 | 3_4:+64853401 | Msa0514170:CDS |
| GCAGTCATGGGAAAAGAAGA+AGG | 0.577231 | 3_4:+64853580 | Msa0514170:intron |
| GTTCGCCAAGGGACAGGAGT+AGG | 0.579437 | 3_4:-64850237 | None:intergenic |
| AGGATGGAAGGAAGATACAA+AGG | 0.580566 | 3_4:+64853798 | Msa0514170:CDS |
| CATACTAAGGCAAGAAAAGG+AGG | 0.580847 | 3_4:+64853380 | Msa0514170:CDS |
| TATCCTTCATTAAGGATGGA+AGG | 0.581539 | 3_4:+64853786 | Msa0514170:CDS |
| ATAATGGTCAGTAGAATGCC+AGG | 0.582209 | 3_4:+64852364 | Msa0514170:CDS |
| AACCAATTCAGAGCTGTGCA+AGG | 0.584214 | 3_4:+64850746 | Msa0514170:CDS |
| GCGAACGATCTCTTCCTGGA+CGG | 0.585459 | 3_4:+64850254 | Msa0514170:CDS |
| AAAACAAAATCGGCTGGACA+AGG | 0.586347 | 3_4:+64851183 | Msa0514170:CDS |
| TGCATATGAAAAGTAAAGGT+AGG | 0.587797 | 3_4:-64853839 | None:intergenic |
| AAGACAAGGGTGGCAGAGGT+GGG | 0.593428 | 3_4:-64849703 | None:intergenic |
| TCCTCTAATGGAAATACTGG+AGG | 0.594082 | 3_4:+64853350 | Msa0514170:CDS |
| CAGGAAGAGATCGTTCGCCA+AGG | 0.594511 | 3_4:-64850249 | None:intergenic |
| GAAAGAAGTGTTGGTGTCAG+TGG | 0.596764 | 3_4:-64849765 | None:intergenic |
| GATATCAAGAGCAAAAGAAG+AGG | 0.598084 | 3_4:+64852098 | Msa0514170:CDS |
| AGAAAATGGTCCAGAATGTG+TGG | 0.598316 | 3_4:-64853885 | None:intergenic |
| TAGCACGCGATGAGGAGCGC+TGG | 0.599164 | 3_4:+64852166 | Msa0514170:CDS |
| ACCAATTCAGAGCTGTGCAA+GGG | 0.606025 | 3_4:+64850747 | Msa0514170:CDS |
| TAAGTTCAATCTCCACTGAA+GGG | 0.607846 | 3_4:+64849848 | Msa0514170:five_prime_UTR |
| ATTGAACTTAGATAATGCTA+AGG | 0.612112 | 3_4:-64849835 | None:intergenic |
| AGAAGAGGCTTCGAGCAGGA+AGG | 0.616810 | 3_4:+64852113 | Msa0514170:CDS |
| AGGAAGAGATCGTTCGCCAA+GGG | 0.618807 | 3_4:-64850248 | None:intergenic |
| GCAAAGGCTGTACAATGAGA+AGG | 0.620234 | 3_4:+64850886 | Msa0514170:CDS |
| CGACAGCAAATTGATAACAT+GGG | 0.621693 | 3_4:-64851649 | None:intergenic |
| AGAAGTGTTGGTGTCAGTGG+AGG | 0.621803 | 3_4:-64849762 | None:intergenic |
| CCAATGGGTATCCAACAACT+GGG | 0.627456 | 3_4:+64853731 | Msa0514170:CDS |
| CGCACAAATCATTCAAGCTG+GGG | 0.628853 | 3_4:-64851090 | None:intergenic |
| ACTAAGGCAAGAAAAGGAGG+AGG | 0.629609 | 3_4:+64853383 | Msa0514170:CDS |
| ACAAATCATTCAAGCTGGGG+TGG | 0.629680 | 3_4:-64851087 | None:intergenic |
| TGCTCATGAGGAGATTGGAA+TGG | 0.629793 | 3_4:-64852065 | None:intergenic |
| CTGTAATAGGAATCCGCACG+AGG | 0.629927 | 3_4:-64849932 | None:intergenic |
| AATCGATACTCAGTCAGTAG+AGG | 0.634619 | 3_4:+64852304 | Msa0514170:CDS |
| TGGAGAAGACAAGTTCGAGA+GGG | 0.635498 | 3_4:+64850090 | Msa0514170:CDS |
| GCACGAGGTTTCTAGCAATG+TGG | 0.647778 | 3_4:-64849917 | None:intergenic |
| CCTACATAAACTCAATATCA+CGG | 0.648283 | 3_4:+64851141 | Msa0514170:CDS |
| CCCAGCTTGAATGATTTGTG+CGG | 0.650581 | 3_4:+64851091 | Msa0514170:CDS |
| ATAATTAGCCTCATAAACGC+AGG | 0.650670 | 3_4:+64851938 | Msa0514170:CDS |
| GAGTTGAAGGATGATTGAAG+AGG | 0.652754 | 3_4:-64851065 | None:intergenic |
| TTGGAGAAGACAAGTTCGAG+AGG | 0.661670 | 3_4:+64850089 | Msa0514170:CDS |
| TCTGTTCATCCATGCTCATG+AGG | 0.663751 | 3_4:-64852077 | None:intergenic |
| GCTGTCGGCCTCATCAGCAG+AGG | 0.684776 | 3_4:+64851665 | Msa0514170:CDS |
| GCTATTCCAAAAGAAGCAGG+AGG | 0.686349 | 3_4:+64851853 | Msa0514170:CDS |
| GTGGATGTTAGCACGCGATG+AGG | 0.690361 | 3_4:+64852158 | Msa0514170:CDS |
| CTGGCTAGAAGAATACAGCA+TGG | 0.700880 | 3_4:+64852185 | Msa0514170:CDS |
| TATGGAGCAAGAGTGCCTTG+AGG | 0.711477 | 3_4:+64850129 | Msa0514170:CDS |
| ACATTGCTAGAAACCTCGTG+CGG | 0.751338 | 3_4:+64849919 | Msa0514170:CDS |
| GATATGCAAGAAATCACACG+TGG | 0.775049 | 3_4:+64851886 | Msa0514170:CDS |
| ACATAAACTCAATATCACGG+TGG | 0.787284 | 3_4:+64851144 | Msa0514170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTATTAGTACTTTTATT+TGG | + | chr3_4:64850397-64850416 | Msa0514170:intron | 10.0% |
| !!! | ATACATATTCATTTTTAAAA+TGG | - | chr3_4:64851987-64852006 | None:intergenic | 10.0% |
| !! | ATATATGTATAAATATATAG+GGG | - | chr3_4:64852688-64852707 | None:intergenic | 10.0% |
| !! | CAATATATGTATAAATATAT+AGG | - | chr3_4:64852690-64852709 | None:intergenic | 10.0% |
| !! | TTATACATATATTGTTATAA+AGG | + | chr3_4:64852696-64852715 | Msa0514170:intron | 10.0% |
| !!! | TTAAATTTTTTTGTTATCTT+GGG | - | chr3_4:64853148-64853167 | None:intergenic | 10.0% |
| !! | TTTCTCAAATTTAGATAATT+TGG | + | chr3_4:64850059-64850078 | Msa0514170:intron | 15.0% |
| !! | TTCTCAAATTTAGATAATTT+GGG | + | chr3_4:64850060-64850079 | Msa0514170:intron | 15.0% |
| !! | TTTATGAAGAAAAACAAAAT+CGG | + | chr3_4:64851173-64851192 | Msa0514170:CDS | 15.0% |
| !!! | ATATATGTAAGTCAATTTTT+AGG | - | chr3_4:64852030-64852049 | None:intergenic | 15.0% |
| !!! | AATTGACTTACATATATAAA+AGG | + | chr3_4:64852033-64852052 | Msa0514170:intron | 15.0% |
| !!! | ATTGACTTACATATATAAAA+GGG | + | chr3_4:64852034-64852053 | Msa0514170:intron | 15.0% |
| !! | AGTCTATATAATTCTTAAAA+GGG | + | chr3_4:64852632-64852651 | Msa0514170:intron | 15.0% |
| !!! | CTTAAATTTTTTTGTTATCT+TGG | - | chr3_4:64853149-64853168 | None:intergenic | 15.0% |
| !! | TGATGTAAAAATATTGAAAA+CGG | - | chr3_4:64853198-64853217 | None:intergenic | 15.0% |
| !!! | TTCAATATTTTTACATCAAA+TGG | + | chr3_4:64853200-64853219 | Msa0514170:intron | 15.0% |
| !!! | TGAAATTTTTAATGATGAAG+AGG | - | chr3_4:64849813-64849832 | None:intergenic | 20.0% |
| !!! | ATACTTTGAAAAATAAGACA+TGG | - | chr3_4:64850436-64850455 | None:intergenic | 20.0% |
| !!! | TTTTCATCAAAATAACATTC+TGG | + | chr3_4:64851368-64851387 | Msa0514170:intron | 20.0% |
| !! | TTGACTTACATATATAAAAG+GGG | + | chr3_4:64852035-64852054 | Msa0514170:intron | 20.0% |
| !! | AAGATCAAAACATTATACTT+TGG | + | chr3_4:64852397-64852416 | Msa0514170:intron | 20.0% |
| !! | CTAGAAAATATGTACTTAAA+AGG | + | chr3_4:64852597-64852616 | Msa0514170:intron | 20.0% |
| !! | CAGTCTATATAATTCTTAAA+AGG | + | chr3_4:64852631-64852650 | Msa0514170:intron | 20.0% |
| !!! | TTATTGACTTAATAAAAGCA+TGG | - | chr3_4:64853301-64853320 | None:intergenic | 20.0% |
| !!! | CAGTTTTAAAATATCCTTAA+TGG | + | chr3_4:64853522-64853541 | Msa0514170:intron | 20.0% |
| !! | TAAGAATAAAGATACCATTA+AGG | - | chr3_4:64853539-64853558 | None:intergenic | 20.0% |
| !! | AAAGAAATTTAAGGAGAAAA+TGG | - | chr3_4:64853902-64853921 | None:intergenic | 20.0% |
| !! | ATTCTTGACAAAGAAATTTA+AGG | - | chr3_4:64853911-64853930 | None:intergenic | 20.0% |
| ! | ATTGAACTTAGATAATGCTA+AGG | - | chr3_4:64849838-64849857 | None:intergenic | 25.0% |
| ! | AACATGAGTAGATTATCTTA+TGG | - | chr3_4:64850029-64850048 | None:intergenic | 25.0% |
| !! | TAGATAATTTGGGATGAAAT+TGG | + | chr3_4:64850070-64850089 | Msa0514170:intron | 25.0% |
| ! | GAAAAACATCAATTTCTGTT+AGG | - | chr3_4:64850914-64850933 | None:intergenic | 25.0% |
| ! | GTAACAAAAAATATAAGCGA+CGG | + | chr3_4:64851115-64851134 | Msa0514170:CDS | 25.0% |
| ! | TATAAATTTCACTACACGAA+AGG | + | chr3_4:64851400-64851419 | Msa0514170:intron | 25.0% |
| !!! | ATCAAATCTTTGGAATCTTA+TGG | + | chr3_4:64851596-64851615 | Msa0514170:CDS | 25.0% |
| ! | TTGATCTTATCATATATACC+TGG | - | chr3_4:64852385-64852404 | None:intergenic | 25.0% |
| ! | TAGTAAAAATGACTAGTAGT+TGG | + | chr3_4:64852489-64852508 | Msa0514170:CDS | 25.0% |
| ! | AGTAAAAATGACTAGTAGTT+GGG | + | chr3_4:64852490-64852509 | Msa0514170:CDS | 25.0% |
| !! | TAAAGTTTTCTTGTATGATC+AGG | + | chr3_4:64852526-64852545 | Msa0514170:CDS | 25.0% |
| !! | CATTAGTGTTTTGTATACTA+CGG | - | chr3_4:64852754-64852773 | None:intergenic | 25.0% |
| !! | GTTTTGTCTTCTTTTATATG+CGG | - | chr3_4:64852818-64852837 | None:intergenic | 25.0% |
| ! | TAAAAGAAGACAAAACTTGA+AGG | + | chr3_4:64852822-64852841 | Msa0514170:intron | 25.0% |
| !!! | TAACATTACTTGTTTTACAG+AGG | - | chr3_4:64853066-64853085 | None:intergenic | 25.0% |
| !! | TATTCCTTTAAAAACCATAC+GGG | - | chr3_4:64853098-64853117 | None:intergenic | 25.0% |
| !! | GTATTCCTTTAAAAACCATA+CGG | - | chr3_4:64853099-64853118 | None:intergenic | 25.0% |
| ! | AACATAAATTCAGGAAATCA+AGG | + | chr3_4:64853761-64853780 | Msa0514170:CDS | 25.0% |
| ! | CAAAAAACAAAACTAGAGTT+TGG | - | chr3_4:64854002-64854021 | None:intergenic | 25.0% |
| GTAATGTAAGTGTAAGCTTT+GGG | - | chr3_4:64849684-64849703 | None:intergenic | 30.0% | |
| ! | GGATTTTGCTTAAAAGACAA+GGG | - | chr3_4:64849719-64849738 | None:intergenic | 30.0% |
| ! | TGGATTTTGCTTAAAAGACA+AGG | - | chr3_4:64849720-64849739 | None:intergenic | 30.0% |
| AAGCAAAATCCAATACCAAA+TGG | + | chr3_4:64849728-64849747 | Msa0514170:five_prime_UTR | 30.0% | |
| !! | GTATTTTTGCCATTTGGTAT+TGG | - | chr3_4:64849740-64849759 | None:intergenic | 30.0% |
| ! | AAATGATGTGAAAGAAGTGT+TGG | - | chr3_4:64849777-64849796 | None:intergenic | 30.0% |
| !! | CTATTGCTTGTTATTATTCC+TGG | - | chr3_4:64850333-64850352 | None:intergenic | 30.0% |
| AGTATAAAACAGATAAGTCG+AGG | + | chr3_4:64850501-64850520 | Msa0514170:intron | 30.0% | |
| TCATTTACTGTAACGATTGA+GGG | - | chr3_4:64850821-64850840 | None:intergenic | 30.0% | |
| ATTATCAGAATGAGTTGCAA+AGG | + | chr3_4:64850870-64850889 | Msa0514170:CDS | 30.0% | |
| CCTACATAAACTCAATATCA+CGG | + | chr3_4:64851141-64851160 | Msa0514170:CDS | 30.0% | |
| ACTAGATTACTCCTTATGAA+GGG | - | chr3_4:64851288-64851307 | None:intergenic | 30.0% | |
| TACTAGATTACTCCTTATGA+AGG | - | chr3_4:64851289-64851308 | None:intergenic | 30.0% | |
| !!! | CAGATGTTTTTAAGTTCCTT+TGG | - | chr3_4:64851313-64851332 | None:intergenic | 30.0% |
| TGTATCACTGTCATAAGAAT+TGG | - | chr3_4:64851342-64851361 | None:intergenic | 30.0% | |
| !!! | TTGATAGTGTTTTGCCTAAA+TGG | - | chr3_4:64851581-64851600 | None:intergenic | 30.0% |
| GCAAAACACTATCAAATCTT+TGG | + | chr3_4:64851586-64851605 | Msa0514170:CDS | 30.0% | |
| ! | TTCAGTCTTGTAAAAAGTTG+AGG | - | chr3_4:64851786-64851805 | None:intergenic | 30.0% |
| !! | ATGTAAGTCAATTTTTAGGC+TGG | - | chr3_4:64852026-64852045 | None:intergenic | 30.0% |
| TAATGGAAAAAGTTGAGAAG+TGG | + | chr3_4:64852139-64852158 | Msa0514170:CDS | 30.0% | |
| CGTAGTATACAAAACACTAA+TGG | + | chr3_4:64852752-64852771 | Msa0514170:intron | 30.0% | |
| ! | ACTAATGGACCAAAAATTCA+CGG | + | chr3_4:64852767-64852786 | Msa0514170:intron | 30.0% |
| ATGCAAAATGTTTCTTACAG+TGG | - | chr3_4:64852983-64853002 | None:intergenic | 30.0% | |
| GTATCATAAGATATGCTTCT+GGG | - | chr3_4:64853176-64853195 | None:intergenic | 30.0% | |
| ! | ATGATCTGATGTGTATTTTC+TGG | + | chr3_4:64853254-64853273 | Msa0514170:intron | 30.0% |
| !! | AACCTACATAGATGTCATTT+TGG | - | chr3_4:64853331-64853350 | None:intergenic | 30.0% |
| TGGAGGAATATAACATACTA+AGG | + | chr3_4:64853367-64853386 | Msa0514170:CDS | 30.0% | |
| TAACATACTAAGGCAAGAAA+AGG | + | chr3_4:64853377-64853396 | Msa0514170:CDS | 30.0% | |
| TCTTACTTCCTCTTTATGTT+TGG | + | chr3_4:64853554-64853573 | Msa0514170:intron | 30.0% | |
| CATTTAAGCTTCTATTTGGA+AGG | - | chr3_4:64853673-64853692 | None:intergenic | 30.0% | |
| CTTCCAAATAGAAGCTTAAA+TGG | + | chr3_4:64853671-64853690 | Msa0514170:CDS | 30.0% | |
| CTTCCATTTAAGCTTCTATT+TGG | - | chr3_4:64853677-64853696 | None:intergenic | 30.0% | |
| GGATCAAACAACATAAATTC+AGG | + | chr3_4:64853752-64853771 | Msa0514170:CDS | 30.0% | |
| TCAAGGTATATCCTTCATTA+AGG | + | chr3_4:64853778-64853797 | Msa0514170:CDS | 30.0% | |
| TGCATATGAAAAGTAAAGGT+AGG | - | chr3_4:64853842-64853861 | None:intergenic | 30.0% | |
| GTCTTGCATATGAAAAGTAA+AGG | - | chr3_4:64853846-64853865 | None:intergenic | 30.0% | |
| TTTGTATGTTCACAACAGTA+TGG | - | chr3_4:64853970-64853989 | None:intergenic | 30.0% | |
| GAGCATGAGTTAATCAATTT+GGG | - | chr3_4:64854036-64854055 | None:intergenic | 30.0% | |
| GGTAATGTAAGTGTAAGCTT+TGG | - | chr3_4:64849685-64849704 | None:intergenic | 35.0% | |
| ! | TTTTGCTTAAAAGACAAGGG+TGG | - | chr3_4:64849716-64849735 | None:intergenic | 35.0% |
| !! | GAGGTAGTATTTTTGCCATT+TGG | - | chr3_4:64849746-64849765 | None:intergenic | 35.0% |
| TAAGTTCAATCTCCACTGAA+GGG | + | chr3_4:64849848-64849867 | Msa0514170:five_prime_UTR | 35.0% | |
| !!! | CTTTTTTCCTGTAAACCTCA+AGG | - | chr3_4:64850147-64850166 | None:intergenic | 35.0% |
| TATCGAGTACTAACTGGATA+TGG | - | chr3_4:64850296-64850315 | None:intergenic | 35.0% | |
| GTTTACTATCGAGTACTAAC+TGG | - | chr3_4:64850302-64850321 | None:intergenic | 35.0% | |
| TAATGTGTTAGCTGTGAGAA+AGG | + | chr3_4:64850477-64850496 | Msa0514170:intron | 35.0% | |
| TAACTGTACAGCCAGAAAAA+AGG | + | chr3_4:64850645-64850664 | Msa0514170:intron | 35.0% | |
| AGAATTTCTGCAGAAATTGC+AGG | + | chr3_4:64850779-64850798 | Msa0514170:CDS | 35.0% | |
| CTCATTTACTGTAACGATTG+AGG | - | chr3_4:64850822-64850841 | None:intergenic | 35.0% | |
| TCTGTCACTAAAAAAACTCG+AGG | + | chr3_4:64850847-64850866 | Msa0514170:CDS | 35.0% | |
| GAAGAATACTAACCCCTTAA+TGG | - | chr3_4:64850943-64850962 | None:intergenic | 35.0% | |
| CCGTGATATTGAGTTTATGT+AGG | - | chr3_4:64851144-64851163 | None:intergenic | 35.0% | |
| ACATAAACTCAATATCACGG+TGG | + | chr3_4:64851144-64851163 | Msa0514170:CDS | 35.0% | |
| TGAAGAAAAACAAAATCGGC+TGG | + | chr3_4:64851177-64851196 | Msa0514170:CDS | 35.0% | |
| CTAGATTACTCCTTATGAAG+GGG | - | chr3_4:64851287-64851306 | None:intergenic | 35.0% | |
| ATCACTGTCATAAGAATTGG+AGG | - | chr3_4:64851339-64851358 | None:intergenic | 35.0% | |
| TGCTTATTTAGTCTCGTGAT+AGG | - | chr3_4:64851466-64851485 | None:intergenic | 35.0% | |
| TATCACGAGACTAAATAAGC+AGG | + | chr3_4:64851465-64851484 | Msa0514170:intron | 35.0% | |
| ATCACGAGACTAAATAAGCA+GGG | + | chr3_4:64851466-64851485 | Msa0514170:intron | 35.0% | |
| ACACAGTACTTGAAGCTTAA+AGG | - | chr3_4:64851492-64851511 | None:intergenic | 35.0% | |
| AAAGATTGTCTATCACGGTA+AGG | - | chr3_4:64851627-64851646 | None:intergenic | 35.0% | |
| GGGAAAAAGATTGTCTATCA+CGG | - | chr3_4:64851632-64851651 | None:intergenic | 35.0% | |
| ! | CGACAGCAAATTGATAACAT+GGG | - | chr3_4:64851652-64851671 | None:intergenic | 35.0% |
| !! | CCATGTTATCAATTTGCTGT+CGG | + | chr3_4:64851650-64851669 | Msa0514170:CDS | 35.0% |
| TTGTTCATTTCTGTCTGTGA+AGG | - | chr3_4:64851917-64851936 | None:intergenic | 35.0% | |
| ! | ATAATTAGCCTCATAAACGC+AGG | + | chr3_4:64851938-64851957 | Msa0514170:CDS | 35.0% |
| TAAATTCACCTGCGTTTATG+AGG | - | chr3_4:64851949-64851968 | None:intergenic | 35.0% | |
| GATATCAAGAGCAAAAGAAG+AGG | + | chr3_4:64852098-64852117 | Msa0514170:CDS | 35.0% | |
| CATTCTACTGACCATTATAC+GGG | - | chr3_4:64852362-64852381 | None:intergenic | 35.0% | |
| GCATTCTACTGACCATTATA+CGG | - | chr3_4:64852363-64852382 | None:intergenic | 35.0% | |
| ACATTATACTTTGGACCAAC+TGG | + | chr3_4:64852406-64852425 | Msa0514170:intron | 35.0% | |
| CTGTTCAATGTTGAATGAGA+AGG | - | chr3_4:64852882-64852901 | None:intergenic | 35.0% | |
| !! | CTTGACAATTTGCTACACAA+TGG | + | chr3_4:64852926-64852945 | Msa0514170:intron | 35.0% |
| TTCTTACAGTGGCTTACAAT+AGG | - | chr3_4:64852972-64852991 | None:intergenic | 35.0% | |
| TGTTATAAACTACTCCCGTA+TGG | + | chr3_4:64853081-64853100 | Msa0514170:intron | 35.0% | |
| ! | TACTCCCGTATGGTTTTTAA+AGG | + | chr3_4:64853091-64853110 | Msa0514170:intron | 35.0% |
| GGTATCATAAGATATGCTTC+TGG | - | chr3_4:64853177-64853196 | None:intergenic | 35.0% | |
| AGCATGGCATCTACTATAAA+AGG | - | chr3_4:64853285-64853304 | None:intergenic | 35.0% | |
| AGCCAAAATGACATCTATGT+AGG | + | chr3_4:64853326-64853345 | Msa0514170:intron | 35.0% | |
| ATCTATGTAGGTTCCTCTAA+TGG | + | chr3_4:64853338-64853357 | Msa0514170:intron | 35.0% | |
| ACTGCAAACCAAACATAAAG+AGG | - | chr3_4:64853565-64853584 | None:intergenic | 35.0% | |
| !! | TTATGTTTGGTTTGCAGTCA+TGG | + | chr3_4:64853567-64853586 | Msa0514170:intron | 35.0% |
| !! | TATGTTTGGTTTGCAGTCAT+GGG | + | chr3_4:64853568-64853587 | Msa0514170:intron | 35.0% |
| TATCTCGCTCAAAAACTACT+TGG | - | chr3_4:64853613-64853632 | None:intergenic | 35.0% | |
| ATTCTCCACACATGAACAAA+AGG | + | chr3_4:64853705-64853724 | Msa0514170:CDS | 35.0% | |
| GGTATATCCTTCATTAAGGA+TGG | + | chr3_4:64853782-64853801 | Msa0514170:CDS | 35.0% | |
| TATCCTTCATTAAGGATGGA+AGG | + | chr3_4:64853786-64853805 | Msa0514170:CDS | 35.0% | |
| ! | TACTTTTCATATGCAAGACG+AGG | + | chr3_4:64853847-64853866 | Msa0514170:CDS | 35.0% |
| CGAGCATGAGTTAATCAATT+TGG | - | chr3_4:64854037-64854056 | None:intergenic | 35.0% | |
| !! | GTTTCTCTTTTAGTTGATGC+TGG | - | chr3_4:64854112-64854131 | None:intergenic | 35.0% |
| CTAAGTTCAATCTCCACTGA+AGG | + | chr3_4:64849847-64849866 | Msa0514170:five_prime_UTR | 40.0% | |
| !! | ACTGAAGGGTACCATCAAAT+GGG | + | chr3_4:64849862-64849881 | Msa0514170:exon | 40.0% |
| ! | TTCTCATTCCAATTGGTGTC+TGG | - | chr3_4:64849894-64849913 | None:intergenic | 40.0% |
| ATTCCTATTACAGGAACTGC+AGG | + | chr3_4:64849942-64849961 | Msa0514170:CDS | 40.0% | |
| CTGGATATGGCTAAGTGAAA+GGG | - | chr3_4:64850283-64850302 | None:intergenic | 40.0% | |
| ACTGGATATGGCTAAGTGAA+AGG | - | chr3_4:64850284-64850303 | None:intergenic | 40.0% | |
| GATAGTAAACAATCAGCACC+AGG | + | chr3_4:64850312-64850331 | Msa0514170:intron | 40.0% | |
| TGTACAGCCAGAAAAAAGGA+CGG | + | chr3_4:64850649-64850668 | Msa0514170:intron | 40.0% | |
| TGCAGAAATTGCAGGAAACT+CGG | + | chr3_4:64850787-64850806 | Msa0514170:CDS | 40.0% | |
| ! | TGTTTTTCACCGCTCCATTA+AGG | + | chr3_4:64850926-64850945 | Msa0514170:intron | 40.0% |
| ! | GTTTTTCACCGCTCCATTAA+GGG | + | chr3_4:64850927-64850946 | Msa0514170:intron | 40.0% |
| ! | TTTTTCACCGCTCCATTAAG+GGG | + | chr3_4:64850928-64850947 | Msa0514170:intron | 40.0% |
| ATACTAACCCCTTAATGGAG+CGG | - | chr3_4:64850938-64850957 | None:intergenic | 40.0% | |
| GAATGAAAGACTACAGCAAG+TGG | + | chr3_4:64850991-64851010 | Msa0514170:intron | 40.0% | |
| GAGTTGAAGGATGATTGAAG+AGG | - | chr3_4:64851068-64851087 | None:intergenic | 40.0% | |
| AAAACAAAATCGGCTGGACA+AGG | + | chr3_4:64851183-64851202 | Msa0514170:CDS | 40.0% | |
| CATACTTACTCCCCTTCATA+AGG | + | chr3_4:64851274-64851293 | Msa0514170:intron | 40.0% | |
| AGGAGTAATCTAGTAGCCAA+AGG | + | chr3_4:64851294-64851313 | Msa0514170:intron | 40.0% | |
| GATTTGCAGCTTCACCATTT+AGG | + | chr3_4:64851564-64851583 | Msa0514170:intron | 40.0% | |
| ! | CCGACAGCAAATTGATAACA+TGG | - | chr3_4:64851653-64851672 | None:intergenic | 40.0% |
| !! | ATCTCTAGAGTTAGACTTCC+TGG | - | chr3_4:64851699-64851718 | None:intergenic | 40.0% |
| TAAGTTAGATACGTACCTGC+TGG | - | chr3_4:64851725-64851744 | None:intergenic | 40.0% | |
| ACAAAAAGCGAGCAAGATGA+AGG | + | chr3_4:64851829-64851848 | Msa0514170:CDS | 40.0% | |
| GATATGCAAGAAATCACACG+TGG | + | chr3_4:64851886-64851905 | Msa0514170:CDS | 40.0% | |
| CATAATCCAAGTGTGCTATC+AGG | + | chr3_4:64852276-64852295 | Msa0514170:intron | 40.0% | |
| AATCGATACTCAGTCAGTAG+AGG | + | chr3_4:64852304-64852323 | Msa0514170:CDS | 40.0% | |
| ATAATGGTCAGTAGAATGCC+AGG | + | chr3_4:64852364-64852383 | Msa0514170:CDS | 40.0% | |
| !!! | TTGCTGCTATTTTTCAGCTC+TGG | + | chr3_4:64852457-64852476 | Msa0514170:intron | 40.0% |
| ATGTGTCTGGTGACATTAGT+GGG | - | chr3_4:64852730-64852749 | None:intergenic | 40.0% | |
| GAAGACAAAACTTGAAGGTG+TGG | + | chr3_4:64852827-64852846 | Msa0514170:intron | 40.0% | |
| GGTTCCTCTAATGGAAATAC+TGG | + | chr3_4:64853347-64853366 | Msa0514170:intron | 40.0% | |
| TCCTCTAATGGAAATACTGG+AGG | + | chr3_4:64853350-64853369 | Msa0514170:CDS | 40.0% | |
| TCCTCCAGTATTTCCATTAG+AGG | - | chr3_4:64853354-64853373 | None:intergenic | 40.0% | |
| CATACTAAGGCAAGAAAAGG+AGG | + | chr3_4:64853380-64853399 | Msa0514170:CDS | 40.0% | |
| ATGAACAAAAGGCTCCCAAT+GGG | + | chr3_4:64853716-64853735 | Msa0514170:CDS | 40.0% | |
| ! | TGTTGTTTGATCCCAGTTGT+TGG | - | chr3_4:64853745-64853764 | None:intergenic | 40.0% |
| CTTCCTTCCATCCTTAATGA+AGG | - | chr3_4:64853792-64853811 | None:intergenic | 40.0% | |
| AGGATGGAAGGAAGATACAA+AGG | + | chr3_4:64853798-64853817 | Msa0514170:CDS | 40.0% | |
| TCTATCATGTCCACACATTC+TGG | + | chr3_4:64853875-64853894 | Msa0514170:CDS | 40.0% | |
| AGAAAATGGTCCAGAATGTG+TGG | - | chr3_4:64853888-64853907 | None:intergenic | 40.0% | |
| TTAAAAGACAAGGGTGGCAG+AGG | - | chr3_4:64849710-64849729 | None:intergenic | 45.0% | |
| !! | GAAAGAAGTGTTGGTGTCAG+TGG | - | chr3_4:64849768-64849787 | None:intergenic | 45.0% |
| ! | CATTTGATGGTACCCTTCAG+TGG | - | chr3_4:64849863-64849882 | None:intergenic | 45.0% |
| !! | CACTGAAGGGTACCATCAAA+TGG | + | chr3_4:64849861-64849880 | Msa0514170:exon | 45.0% |
| ! | TCTGGAATGAGCCCATTTGA+TGG | - | chr3_4:64849876-64849895 | None:intergenic | 45.0% |
| GTGGAGCTTCTCATTCCAAT+TGG | - | chr3_4:64849901-64849920 | None:intergenic | 45.0% | |
| ACATTGCTAGAAACCTCGTG+CGG | + | chr3_4:64849919-64849938 | Msa0514170:CDS | 45.0% | |
| TTGCCTGCAGTTCCTGTAAT+AGG | - | chr3_4:64849948-64849967 | None:intergenic | 45.0% | |
| TTGGAGAAGACAAGTTCGAG+AGG | + | chr3_4:64850089-64850108 | Msa0514170:CDS | 45.0% | |
| TGGAGAAGACAAGTTCGAGA+GGG | + | chr3_4:64850090-64850109 | Msa0514170:CDS | 45.0% | |
| AGACAAGTTCGAGAGGGAAA+AGG | + | chr3_4:64850096-64850115 | Msa0514170:CDS | 45.0% | |
| GGAAAAGGTTCTGCTGGATA+TGG | + | chr3_4:64850111-64850130 | Msa0514170:CDS | 45.0% | |
| !! | AAGAGTGCCTTGAGGTTTAC+AGG | + | chr3_4:64850137-64850156 | Msa0514170:CDS | 45.0% |
| ! | AGCTAGTCTGCATCAGAAGT+TGG | + | chr3_4:64850189-64850208 | Msa0514170:CDS | 45.0% |
| GTACAGCCAGAAAAAAGGAC+GGG | + | chr3_4:64850650-64850669 | Msa0514170:intron | 45.0% | |
| ATTCAATCACTCCAGCACTC+CGG | + | chr3_4:64850693-64850712 | Msa0514170:CDS | 45.0% | |
| AACCAATTCAGAGCTGTGCA+AGG | + | chr3_4:64850746-64850765 | Msa0514170:CDS | 45.0% | |
| ACCAATTCAGAGCTGTGCAA+GGG | + | chr3_4:64850747-64850766 | Msa0514170:CDS | 45.0% | |
| GCAAAGGCTGTACAATGAGA+AGG | + | chr3_4:64850886-64850905 | Msa0514170:CDS | 45.0% | |
| ACACAGCTTGTCCACAATCT+TGG | + | chr3_4:64851033-64851052 | Msa0514170:CDS | 45.0% | |
| CACAGCTTGTCCACAATCTT+GGG | + | chr3_4:64851034-64851053 | Msa0514170:CDS | 45.0% | |
| CTTGTCCACAATCTTGGGAA+AGG | + | chr3_4:64851039-64851058 | Msa0514170:CDS | 45.0% | |
| GGAATCCTTTCCCAAGATTG+TGG | - | chr3_4:64851047-64851066 | None:intergenic | 45.0% | |
| ACAAATCATTCAAGCTGGGG+TGG | - | chr3_4:64851090-64851109 | None:intergenic | 45.0% | |
| CGCACAAATCATTCAAGCTG+GGG | - | chr3_4:64851093-64851112 | None:intergenic | 45.0% | |
| CCGCACAAATCATTCAAGCT+GGG | - | chr3_4:64851094-64851113 | None:intergenic | 45.0% | |
| ! | CCCAGCTTGAATGATTTGTG+CGG | + | chr3_4:64851091-64851110 | Msa0514170:CDS | 45.0% |
| TCCGCACAAATCATTCAAGC+TGG | - | chr3_4:64851095-64851114 | None:intergenic | 45.0% | |
| ATCTGATACCTCTGCTGATG+AGG | - | chr3_4:64851676-64851695 | None:intergenic | 45.0% | |
| ! | AACTCTAGAGATTGTCCAGC+AGG | + | chr3_4:64851707-64851726 | Msa0514170:CDS | 45.0% |
| GGAGCTATTCCAAAAGAAGC+AGG | + | chr3_4:64851850-64851869 | Msa0514170:CDS | 45.0% | |
| GCTATTCCAAAAGAAGCAGG+AGG | + | chr3_4:64851853-64851872 | Msa0514170:CDS | 45.0% | |
| TGCTCATGAGGAGATTGGAA+TGG | - | chr3_4:64852068-64852087 | None:intergenic | 45.0% | |
| TTCCAATCTCCTCATGAGCA+TGG | + | chr3_4:64852068-64852087 | Msa0514170:CDS | 45.0% | |
| ATCCATGCTCATGAGGAGAT+TGG | - | chr3_4:64852073-64852092 | None:intergenic | 45.0% | |
| TCTGTTCATCCATGCTCATG+AGG | - | chr3_4:64852080-64852099 | None:intergenic | 45.0% | |
| TTCGAGCAGGAAGGCTATAA+TGG | + | chr3_4:64852122-64852141 | Msa0514170:CDS | 45.0% | |
| CTGGCTAGAAGAATACAGCA+TGG | + | chr3_4:64852185-64852204 | Msa0514170:CDS | 45.0% | |
| TCTCATCCTGATAGCACACT+TGG | - | chr3_4:64852285-64852304 | None:intergenic | 45.0% | |
| TGTGTCTGGTGACATTAGTG+GGG | - | chr3_4:64852729-64852748 | None:intergenic | 45.0% | |
| CATGTGTCTGGTGACATTAG+TGG | - | chr3_4:64852731-64852750 | None:intergenic | 45.0% | |
| TGTATACTACGGCATGTGTC+TGG | - | chr3_4:64852743-64852762 | None:intergenic | 45.0% | |
| !! | GAGCTTGCTCCGTGAATTTT+TGG | - | chr3_4:64852779-64852798 | None:intergenic | 45.0% |
| !! | TGTTATCTTGGGAAGTGCTG+AGG | - | chr3_4:64853137-64853156 | None:intergenic | 45.0% |
| ACTAAGGCAAGAAAAGGAGG+AGG | + | chr3_4:64853383-64853402 | Msa0514170:CDS | 45.0% | |
| GGAGGATAAGAAAAGACAGC+AGG | + | chr3_4:64853401-64853420 | Msa0514170:CDS | 45.0% | |
| GCAGTCATGGGAAAAGAAGA+AGG | + | chr3_4:64853580-64853599 | Msa0514170:intron | 45.0% | |
| GCTCAAAAACTACTTGGCTC+TGG | - | chr3_4:64853607-64853626 | None:intergenic | 45.0% | |
| CATGAACAAAAGGCTCCCAA+TGG | + | chr3_4:64853715-64853734 | Msa0514170:CDS | 45.0% | |
| CCAGTTGTTGGATACCCATT+GGG | - | chr3_4:64853733-64853752 | None:intergenic | 45.0% | |
| CCAATGGGTATCCAACAACT+GGG | + | chr3_4:64853731-64853750 | Msa0514170:CDS | 45.0% | |
| !! | AATATATGTATAAATATATA+GGG | - | chr3_4:64852689-64852708 | None:intergenic | 5.0% |
| !! | AGAAGTGTTGGTGTCAGTGG+AGG | - | chr3_4:64849765-64849784 | None:intergenic | 50.0% |
| GGCTCATTCCAGACACCAAT+TGG | + | chr3_4:64849883-64849902 | Msa0514170:CDS | 50.0% | |
| !! | GCACGAGGTTTCTAGCAATG+TGG | - | chr3_4:64849920-64849939 | None:intergenic | 50.0% |
| CTGTAATAGGAATCCGCACG+AGG | - | chr3_4:64849935-64849954 | None:intergenic | 50.0% | |
| CTCGTGCGGATTCCTATTAC+AGG | + | chr3_4:64849933-64849952 | Msa0514170:CDS | 50.0% | |
| !! | TATGGAGCAAGAGTGCCTTG+AGG | + | chr3_4:64850129-64850148 | Msa0514170:CDS | 50.0% |
| TCAGAAGTTGGCTGAAGCAG+AGG | + | chr3_4:64850201-64850220 | Msa0514170:CDS | 50.0% | |
| AGGAAGAGATCGTTCGCCAA+GGG | - | chr3_4:64850251-64850270 | None:intergenic | 50.0% | |
| !!! | AGCGTACCCGTCCTTTTTTC+TGG | - | chr3_4:64850659-64850678 | None:intergenic | 50.0% |
| TTCAATCACTCCAGCACTCC+GGG | + | chr3_4:64850694-64850713 | Msa0514170:CDS | 50.0% | |
| CTTTCCTCAAGCGCATTTCC+CGG | - | chr3_4:64850715-64850734 | None:intergenic | 50.0% | |
| !! | TCCCTTGCACAGCTCTGAAT+TGG | - | chr3_4:64850751-64850770 | None:intergenic | 50.0% |
| !! | TCAGCAGAGGTATCAGATCC+AGG | + | chr3_4:64851678-64851697 | Msa0514170:CDS | 50.0% |
| ! | CCAGTTCCTCCTGCTTCTTT+TGG | - | chr3_4:64851862-64851881 | None:intergenic | 50.0% |
| CCAAAAGAAGCAGGAGGAAC+TGG | + | chr3_4:64851859-64851878 | Msa0514170:CDS | 50.0% | |
| CAAAAGAAGAGGCTTCGAGC+AGG | + | chr3_4:64852109-64852128 | Msa0514170:CDS | 50.0% | |
| AGCTGAACGTGCCCGTATAA+TGG | + | chr3_4:64852348-64852367 | Msa0514170:CDS | 50.0% | |
| CTGTGTGATTGCTCTCCAGT+TGG | - | chr3_4:64852424-64852443 | None:intergenic | 50.0% | |
| GTGTCTGGTGACATTAGTGG+GGG | - | chr3_4:64852728-64852747 | None:intergenic | 50.0% | |
| !! | ATTTGGAAGGCGTCTACTGC+TGG | - | chr3_4:64853660-64853679 | None:intergenic | 50.0% |
| ! | GGGAGCCTTTTGTTCATGTG+TGG | - | chr3_4:64853713-64853732 | None:intergenic | 50.0% |
| CCCAATGGGTATCCAACAAC+TGG | + | chr3_4:64853730-64853749 | Msa0514170:CDS | 50.0% | |
| CCCAGTTGTTGGATACCCAT+TGG | - | chr3_4:64853734-64853753 | None:intergenic | 50.0% | |
| AAGACAAGGGTGGCAGAGGT+GGG | - | chr3_4:64849706-64849725 | None:intergenic | 55.0% | |
| AAAGACAAGGGTGGCAGAGG+TGG | - | chr3_4:64849707-64849726 | None:intergenic | 55.0% | |
| CGAGAGGGAAAAGGTTCTGC+TGG | + | chr3_4:64850105-64850124 | Msa0514170:CDS | 55.0% | |
| ACTCACCTACTCCTGTCCCT+TGG | + | chr3_4:64850232-64850251 | Msa0514170:CDS | 55.0% | |
| CAGGAAGAGATCGTTCGCCA+AGG | - | chr3_4:64850252-64850271 | None:intergenic | 55.0% | |
| CTTGGCGAACGATCTCTTCC+TGG | + | chr3_4:64850250-64850269 | Msa0514170:CDS | 55.0% | |
| GCGAACGATCTCTTCCTGGA+CGG | + | chr3_4:64850254-64850273 | Msa0514170:CDS | 55.0% | |
| CGAACGATCTCTTCCTGGAC+GGG | + | chr3_4:64850255-64850274 | Msa0514170:CDS | 55.0% | |
| !! | AAGTGAAAGGGTACCCGTCC+AGG | - | chr3_4:64850271-64850290 | None:intergenic | 55.0% |
| TCAAGCTGGGGTGGAGTTGA+AGG | - | chr3_4:64851081-64851100 | None:intergenic | 55.0% | |
| AGAAGAGGCTTCGAGCAGGA+AGG | + | chr3_4:64852113-64852132 | Msa0514170:CDS | 55.0% | |
| GTGGATGTTAGCACGCGATG+AGG | + | chr3_4:64852158-64852177 | Msa0514170:CDS | 55.0% | |
| TGGTGACATTAGTGGGGGCT+AGG | - | chr3_4:64852723-64852742 | None:intergenic | 55.0% | |
| GTTCGCCAAGGGACAGGAGT+AGG | - | chr3_4:64850240-64850259 | None:intergenic | 60.0% | |
| GAGATCGTTCGCCAAGGGAC+AGG | - | chr3_4:64850246-64850265 | None:intergenic | 60.0% | |
| AAGCGCATTTCCCGGAGTGC+TGG | - | chr3_4:64850707-64850726 | None:intergenic | 60.0% | |
| CACTCCGGGAAATGCGCTTG+AGG | + | chr3_4:64850708-64850727 | Msa0514170:CDS | 60.0% | |
| AGGCGTCTACTGCTGGTGCT+TGG | - | chr3_4:64853653-64853672 | None:intergenic | 60.0% | |
| GCTGTCGGCCTCATCAGCAG+AGG | + | chr3_4:64851665-64851684 | Msa0514170:CDS | 65.0% | |
| ! | TAGCACGCGATGAGGAGCGC+TGG | + | chr3_4:64852166-64852185 | Msa0514170:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 64849659 | 64854149 | 64849659 | ID=Msa0514170;Name=Msa0514170 |
| chr3_4 | mRNA | 64849659 | 64854149 | 64849659 | ID=Msa0514170-mRNA-1;Parent=Msa0514170;Name=Msa0514170-mRNA-1;_AED=0.08;_eAED=0.08;_QI=221|1|1|1|1|1|11|236|595 |
| chr3_4 | exon | 64849659 | 64849963 | 64849659 | ID=Msa0514170-mRNA-1:exon:16341;Parent=Msa0514170-mRNA-1 |
| chr3_4 | exon | 64850073 | 64850276 | 64850073 | ID=Msa0514170-mRNA-1:exon:16342;Parent=Msa0514170-mRNA-1 |
| chr3_4 | exon | 64850656 | 64850907 | 64850656 | ID=Msa0514170-mRNA-1:exon:16343;Parent=Msa0514170-mRNA-1 |
| chr3_4 | exon | 64850992 | 64851204 | 64850992 | ID=Msa0514170-mRNA-1:exon:16344;Parent=Msa0514170-mRNA-1 |
| chr3_4 | exon | 64851573 | 64851728 | 64851573 | ID=Msa0514170-mRNA-1:exon:16345;Parent=Msa0514170-mRNA-1 |
| chr3_4 | exon | 64851800 | 64851959 | 64851800 | ID=Msa0514170-mRNA-1:exon:16346;Parent=Msa0514170-mRNA-1 |
| chr3_4 | exon | 64852055 | 64852206 | 64852055 | ID=Msa0514170-mRNA-1:exon:16347;Parent=Msa0514170-mRNA-1 |
| chr3_4 | exon | 64852298 | 64852385 | 64852298 | ID=Msa0514170-mRNA-1:exon:16348;Parent=Msa0514170-mRNA-1 |
| chr3_4 | exon | 64852474 | 64852547 | 64852474 | ID=Msa0514170-mRNA-1:exon:16349;Parent=Msa0514170-mRNA-1 |
| chr3_4 | exon | 64853348 | 64853422 | 64853348 | ID=Msa0514170-mRNA-1:exon:16350;Parent=Msa0514170-mRNA-1 |
| chr3_4 | exon | 64853584 | 64854149 | 64853584 | ID=Msa0514170-mRNA-1:exon:16351;Parent=Msa0514170-mRNA-1 |
| chr3_4 | five_prime_UTR | 64849659 | 64849879 | 64849659 | ID=Msa0514170-mRNA-1:five_prime_utr;Parent=Msa0514170-mRNA-1 |
| chr3_4 | CDS | 64849880 | 64849963 | 64849880 | ID=Msa0514170-mRNA-1:cds;Parent=Msa0514170-mRNA-1 |
| chr3_4 | CDS | 64850073 | 64850276 | 64850073 | ID=Msa0514170-mRNA-1:cds;Parent=Msa0514170-mRNA-1 |
| chr3_4 | CDS | 64850656 | 64850907 | 64850656 | ID=Msa0514170-mRNA-1:cds;Parent=Msa0514170-mRNA-1 |
| chr3_4 | CDS | 64850992 | 64851204 | 64850992 | ID=Msa0514170-mRNA-1:cds;Parent=Msa0514170-mRNA-1 |
| chr3_4 | CDS | 64851573 | 64851728 | 64851573 | ID=Msa0514170-mRNA-1:cds;Parent=Msa0514170-mRNA-1 |
| chr3_4 | CDS | 64851800 | 64851959 | 64851800 | ID=Msa0514170-mRNA-1:cds;Parent=Msa0514170-mRNA-1 |
| chr3_4 | CDS | 64852055 | 64852206 | 64852055 | ID=Msa0514170-mRNA-1:cds;Parent=Msa0514170-mRNA-1 |
| chr3_4 | CDS | 64852298 | 64852385 | 64852298 | ID=Msa0514170-mRNA-1:cds;Parent=Msa0514170-mRNA-1 |
| chr3_4 | CDS | 64852474 | 64852547 | 64852474 | ID=Msa0514170-mRNA-1:cds;Parent=Msa0514170-mRNA-1 |
| chr3_4 | CDS | 64853348 | 64853422 | 64853348 | ID=Msa0514170-mRNA-1:cds;Parent=Msa0514170-mRNA-1 |
| chr3_4 | CDS | 64853584 | 64853913 | 64853584 | ID=Msa0514170-mRNA-1:cds;Parent=Msa0514170-mRNA-1 |
| chr3_4 | three_prime_UTR | 64853914 | 64854149 | 64853914 | ID=Msa0514170-mRNA-1:three_prime_utr;Parent=Msa0514170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
