Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1078930 | XP_024625178.1 | 97.929 | 338 | 6 | 1 | 1 | 337 | 1 | 338 | 0.0 | 676 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1078930 | sp|Q9ZQC6|IRX9_ARATH | 59.767 | 343 | 123 | 4 | 1 | 328 | 1 | 343 | 1.08e-143 | 412 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1078930 | Q599J6 | 97.929 | 338 | 6 | 1 | 1 | 337 | 1 | 338 | 0.0 | 676 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040660 | Msa1078930 | 0.849651 | 2.819834e-60 | -8.615850e-47 |
| Msa0081250 | Msa1078930 | 0.804610 | 1.988739e-49 | -8.615850e-47 |
| Msa0626450 | Msa1078930 | 0.808101 | 3.655007e-50 | -8.615850e-47 |
| Msa0626490 | Msa1078930 | 0.807250 | 5.539815e-50 | -8.615850e-47 |
| Msa0642950 | Msa1078930 | 0.830621 | 2.649555e-55 | -8.615850e-47 |
| Msa0664600 | Msa1078930 | 0.805226 | 1.478693e-49 | -8.615850e-47 |
| Msa0667370 | Msa1078930 | 0.803501 | 3.382451e-49 | -8.615850e-47 |
| Msa0682500 | Msa1078930 | 0.806728 | 7.145450e-50 | -8.615850e-47 |
| Msa0688820 | Msa1078930 | 0.890562 | 8.809874e-74 | -8.615850e-47 |
| Msa0184680 | Msa1078930 | 0.861476 | 9.991578e-64 | -8.615850e-47 |
| Msa0193850 | Msa1078930 | 0.812959 | 3.260503e-51 | -8.615850e-47 |
| Msa0199960 | Msa1078930 | 0.823009 | 1.744548e-53 | -8.615850e-47 |
| Msa0373310 | Msa1078930 | 0.800873 | 1.175053e-48 | -8.615850e-47 |
| Msa0392380 | Msa1078930 | 0.868752 | 5.170643e-66 | -8.615850e-47 |
| Msa0421890 | Msa1078930 | 0.802499 | 5.450703e-49 | -8.615850e-47 |
| Msa0440320 | Msa1078930 | 0.877739 | 4.934310e-69 | -8.615850e-47 |
| Msa0467770 | Msa1078930 | 0.806279 | 8.886083e-50 | -8.615850e-47 |
| Msa0475290 | Msa1078930 | 0.811146 | 8.098980e-51 | -8.615850e-47 |
| Msa1037550 | Msa1078930 | 0.862986 | 3.436293e-64 | -8.615850e-47 |
| Msa1063500 | Msa1078930 | 0.800441 | 1.439465e-48 | -8.615850e-47 |
| Msa1078930 | Msa1123930 | 0.986420 | 9.980665e-167 | -8.615850e-47 |
| Msa1078930 | Msa1130430 | 0.828067 | 1.104660e-54 | -8.615850e-47 |
| Msa1078930 | Msa1169230 | 0.955862 | 1.136220e-113 | -8.615850e-47 |
| Msa1078930 | Msa1222590 | 0.826842 | 2.172793e-54 | -8.615850e-47 |
| Msa1078930 | Msa1264570 | 0.828496 | 8.704979e-55 | -8.615850e-47 |
| Msa1078930 | Msa1340700 | 0.857833 | 1.246985e-62 | -8.615850e-47 |
| Msa1078930 | Msa1412710 | 0.805775 | 1.134066e-49 | -8.615850e-47 |
| Msa1078930 | Msa1426070 | 0.996514 | 1.660862e-228 | -8.615850e-47 |
| Msa1078930 | Msa1430750 | 0.823860 | 1.103088e-53 | -8.615850e-47 |
| Msa1078930 | Msa1434480 | 0.807096 | 5.973835e-50 | -8.615850e-47 |
| Msa1078930 | Msa1436420 | 0.854028 | 1.616151e-61 | -8.615850e-47 |
| Msa1078930 | Msa1445050 | 0.806501 | 7.979081e-50 | -8.615850e-47 |
| Msa1078930 | Msa1446110 | 0.847789 | 9.258672e-60 | -8.615850e-47 |
| Msa0242490 | Msa1078930 | 0.839287 | 1.733754e-57 | -8.615850e-47 |
| Msa0243600 | Msa1078930 | 0.863756 | 1.983874e-64 | -8.615850e-47 |
| Msa0267660 | Msa1078930 | 0.818750 | 1.665501e-52 | -8.615850e-47 |
| Msa0274440 | Msa1078930 | 0.820851 | 5.512296e-53 | -8.615850e-47 |
| Msa0280690 | Msa1078930 | 0.843610 | 1.260595e-58 | -8.615850e-47 |
| Msa0282220 | Msa1078930 | 0.859579 | 3.752709e-63 | -8.615850e-47 |
| Msa0300210 | Msa1078930 | 0.810986 | 8.775727e-51 | -8.615850e-47 |
| Msa0314170 | Msa1078930 | 0.832528 | 8.978606e-56 | -8.615850e-47 |
| Msa0319940 | Msa1078930 | 0.851023 | 1.162339e-60 | -8.615850e-47 |
| Msa0487500 | Msa1078930 | 0.882029 | 1.466998e-70 | -8.615850e-47 |
| Msa0514170 | Msa1078930 | 0.807215 | 5.634921e-50 | -8.615850e-47 |
| Msa0528570 | Msa1078930 | 0.803932 | 2.752679e-49 | -8.615850e-47 |
| Msa0547110 | Msa1078930 | 0.805490 | 1.301479e-49 | -8.615850e-47 |
| Msa0601820 | Msa1078930 | 0.868970 | 4.394227e-66 | -8.615850e-47 |
| Msa0968350 | Msa1078930 | 0.992607 | 2.578005e-194 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1078930 | MtrunA17_Chr7g0263751 | 97.929 | 338 | 6 | 1 | 1 | 337 | 1 | 338 | 0.0 | 676 |
| Msa1078930 | MtrunA17_Chr3g0140951 | 48.035 | 229 | 110 | 3 | 103 | 324 | 187 | 413 | 1.44e-70 | 226 |
| Msa1078930 | MtrunA17_Chr3g0140001 | 35.817 | 349 | 195 | 9 | 3 | 328 | 70 | 412 | 9.70e-65 | 211 |
| Msa1078930 | MtrunA17_Chr5g0401811 | 25.362 | 276 | 164 | 8 | 100 | 336 | 147 | 419 | 9.22e-16 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1078930 | AT2G37090.1 | 59.767 | 343 | 123 | 4 | 1 | 328 | 1 | 343 | 1.10e-144 | 412 |
| Msa1078930 | AT1G27600.2 | 40.625 | 320 | 166 | 7 | 14 | 324 | 62 | 366 | 5.91e-74 | 234 |
| Msa1078930 | AT1G27600.1 | 40.625 | 320 | 166 | 7 | 14 | 324 | 62 | 366 | 5.91e-74 | 234 |
| Msa1078930 | AT5G67230.1 | 25.000 | 272 | 160 | 8 | 95 | 324 | 143 | 412 | 3.27e-16 | 79.7 |
Find 61 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTGCTTTCTTCCATAAA+TGG | 0.140314 | 7_2:-77956829 | None:intergenic |
| GAAACGCCATAGCAAGATTT+TGG | 0.205672 | 7_2:-77959759 | None:intergenic |
| TGGCAGCACATATTTGTTAA+TGG | 0.245165 | 7_2:-77956650 | None:intergenic |
| CATTCAATAGCTCCATTCTC+TGG | 0.283106 | 7_2:+77958278 | Msa1078930:CDS |
| AGTGGGATTGTTCACTTTGC+TGG | 0.287605 | 7_2:+77957379 | Msa1078930:CDS |
| TGACAATTGAGCAGGGTCTT+TGG | 0.303432 | 7_2:+77958109 | Msa1078930:intron |
| AATAATAAAGTATATAGTTT+AGG | 0.313120 | 7_2:-77956681 | None:intergenic |
| ACTACTATACATCATATGTT+AGG | 0.313282 | 7_2:+77959824 | Msa1078930:three_prime_UTR |
| ACAAAAGCTAATATTTAGTT+TGG | 0.322846 | 7_2:+77956592 | Msa1078930:five_prime_UTR |
| CAGTGAAGAGTTCATGGACT+TGG | 0.355535 | 7_2:+77957297 | Msa1078930:CDS |
| TGTGACTCTTCTCAAGTCAT+TGG | 0.366016 | 7_2:+77958193 | Msa1078930:CDS |
| CTCTGGCAATTCAGTTGATT+CGG | 0.377196 | 7_2:-77957233 | None:intergenic |
| TTGGAGGTATTTCATATGTA+AGG | 0.398590 | 7_2:-77956569 | None:intergenic |
| CATTGCTTTCTTCCATAAAT+GGG | 0.399629 | 7_2:-77956828 | None:intergenic |
| CCAGAGATATTGAGGAAAAC+TGG | 0.401504 | 7_2:+77957250 | Msa1078930:CDS |
| GAATAAAATTGAGTAATTGT+TGG | 0.406917 | 7_2:-77956729 | None:intergenic |
| TGGCTATGGATTCTAGGTGC+TGG | 0.412979 | 7_2:-77957022 | None:intergenic |
| TTAGGCTTCAATTGAGGTAG+TGG | 0.414050 | 7_2:-77957082 | None:intergenic |
| TTCACAGGTTTAGCTCCAAC+AGG | 0.416327 | 7_2:+77956884 | Msa1078930:CDS |
| TTCTCTGGGACCCTGAGAGA+TGG | 0.425575 | 7_2:+77958293 | Msa1078930:CDS |
| GAAGTTCGACCCCATCTCTC+AGG | 0.437016 | 7_2:-77958304 | None:intergenic |
| TCTCTGGGACCCTGAGAGAT+GGG | 0.437280 | 7_2:+77958294 | Msa1078930:CDS |
| CTACTATACATCATATGTTA+GGG | 0.437935 | 7_2:+77959825 | Msa1078930:three_prime_UTR |
| GGGTCGAACTTCATCAGTTA+AGG | 0.438041 | 7_2:+77958315 | Msa1078930:CDS |
| AATATTAAAGATTTACCTGT+TGG | 0.438372 | 7_2:-77956899 | None:intergenic |
| ATCAGTTAAGGATACTTCTC+AGG | 0.448819 | 7_2:+77958327 | Msa1078930:CDS |
| GGAAAACTGGTATCATGTAT+AGG | 0.455162 | 7_2:+77957263 | Msa1078930:CDS |
| TGAAATGTTGAGGTTATGAT+TGG | 0.461969 | 7_2:-77956620 | None:intergenic |
| TTGTTGATCAACCATTGCTT+TGG | 0.462201 | 7_2:+77957191 | Msa1078930:CDS |
| TAGAAACTAGTGCTTGGAAA+TGG | 0.464267 | 7_2:-77959801 | None:intergenic |
| TCTCTCAGGGTCCCAGAGAA+TGG | 0.466645 | 7_2:-77958290 | None:intergenic |
| CTGAATTGCCAGAGATATTG+AGG | 0.474651 | 7_2:+77957242 | Msa1078930:CDS |
| AGAAGATGGGTTCAGTAGAA+AGG | 0.478029 | 7_2:+77956792 | Msa1078930:exon |
| TGCAAAACTTGAAATATGAA+TGG | 0.482368 | 7_2:-77958257 | None:intergenic |
| AGAAGATGAGGCTAAGTTGA+AGG | 0.485965 | 7_2:+77959718 | Msa1078930:CDS |
| GCAAAACTTGAAATATGAAT+GGG | 0.488014 | 7_2:-77958256 | None:intergenic |
| ATATAGTTTAGGTGCATTTG+TGG | 0.488627 | 7_2:-77956670 | None:intergenic |
| ACTCAATATCTCTAAGCTGT+TGG | 0.489245 | 7_2:-77957432 | None:intergenic |
| ACTTGAGAAGAGTCACAAAC+TGG | 0.500366 | 7_2:-77958187 | None:intergenic |
| TGGAAACGTTTGAAATGTTG+AGG | 0.501044 | 7_2:-77956630 | None:intergenic |
| TATGAAAGCAACTCTTGTAC+TGG | 0.507724 | 7_2:-77959892 | None:intergenic |
| GAAGATCATAAACATTAGAA+AGG | 0.518111 | 7_2:-77957402 | None:intergenic |
| GTTGACATTTGAGAAGGTTG+TGG | 0.518182 | 7_2:-77956971 | None:intergenic |
| TTGGAACAGAATGAAGAGAA+GGG | 0.523187 | 7_2:-77956710 | None:intergenic |
| ATTCAATAGCTCCATTCTCT+GGG | 0.531877 | 7_2:+77958279 | Msa1078930:CDS |
| GTTGGAACAGAATGAAGAGA+AGG | 0.540184 | 7_2:-77956711 | None:intergenic |
| ATTGAGCATCATAGACTAAG+TGG | 0.544865 | 7_2:+77957361 | Msa1078930:CDS |
| AGTAGTTAGAAACTAGTGCT+TGG | 0.546140 | 7_2:-77959807 | None:intergenic |
| TTTGCAAGTAATAATGCCGT+TGG | 0.557119 | 7_2:-77958139 | None:intergenic |
| TGAGCAGGGTCTTTGGAACA+TGG | 0.563420 | 7_2:+77958116 | Msa1078930:intron |
| GCAAGTAGTTCTAGAAGATG+AGG | 0.569238 | 7_2:+77959706 | Msa1078930:CDS |
| ACTCTTCTCAAGTCATTGGA+TGG | 0.578421 | 7_2:+77958197 | Msa1078930:CDS |
| ACTGCTCCAAAATCTTGCTA+TGG | 0.580047 | 7_2:+77959753 | Msa1078930:CDS |
| GAAGATGAGGCTAAGTTGAA+GGG | 0.584310 | 7_2:+77959719 | Msa1078930:CDS |
| AAGTTCGACCCCATCTCTCA+GGG | 0.598644 | 7_2:-77958303 | None:intergenic |
| CTCTGGGACCCTGAGAGATG+GGG | 0.602550 | 7_2:+77958295 | Msa1078930:CDS |
| TCGACAACAATCCAAAGCAA+TGG | 0.628366 | 7_2:-77957202 | None:intergenic |
| TTGAGCATCATAGACTAAGT+GGG | 0.628829 | 7_2:+77957362 | Msa1078930:CDS |
| GGTCTTTGGAACATGGCCAA+CGG | 0.646193 | 7_2:+77958123 | Msa1078930:CDS |
| TACTATACATCATATGTTAG+GGG | 0.651812 | 7_2:+77959826 | Msa1078930:three_prime_UTR |
| TATACGGAAGACAATTACAA+AGG | 0.665200 | 7_2:-77959947 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAAAGTATATAGTTT+AGG | - | chr7_2:77956684-77956703 | None:intergenic | 10.0% |
| !! | ACACTTAAAAAAAATTATAT+TGG | + | chr7_2:77957949-77957968 | Msa1078930:intron | 10.0% |
| !! | ATAAAAATAAAAATAAGTCA+AGG | - | chr7_2:77958465-77958484 | None:intergenic | 10.0% |
| !!! | CTTAATTTTTTTTTTTTTGA+AGG | + | chr7_2:77959086-77959105 | Msa1078930:intron | 10.0% |
| !! | AATAAAAATGTTAAATAGTT+TGG | + | chr7_2:77959139-77959158 | Msa1078930:intron | 10.0% |
| !!! | CAAATAGTTTTTTTTTTTAA+TGG | + | chr7_2:77959185-77959204 | Msa1078930:intron | 10.0% |
| !! | ACACAAATAAAAAATATATA+CGG | - | chr7_2:77959966-77959985 | None:intergenic | 10.0% |
| !!! | TGATTATTTTTTTAACAAAA+AGG | + | chr7_2:77960051-77960070 | Msa1078930:three_prime_UTR | 10.0% |
| !! | AAAAATTTACCAAAAAATTC+AGG | - | chr7_2:77956763-77956782 | None:intergenic | 15.0% |
| !!! | AATAAACAACTTTTTTCAAT+TGG | + | chr7_2:77957620-77957639 | Msa1078930:intron | 15.0% |
| !! | ATATCAAAAACCAAATTTAT+TGG | - | chr7_2:77957752-77957771 | None:intergenic | 15.0% |
| !!! | TTTAATCTTCACAATATTTT+CGG | - | chr7_2:77958505-77958524 | None:intergenic | 15.0% |
| !! | AAAAATTGTCAAGTTTATAA+CGG | + | chr7_2:77958962-77958981 | Msa1078930:intron | 15.0% |
| !!! | ACTAAATATTAGCTTTTGTT+TGG | - | chr7_2:77956591-77956610 | None:intergenic | 20.0% |
| !! | ACAAAAGCTAATATTTAGTT+TGG | + | chr7_2:77956592-77956611 | Msa1078930:five_prime_UTR | 20.0% |
| !! | GAATAAAATTGAGTAATTGT+TGG | - | chr7_2:77956732-77956751 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTATGTTTTGTGA+TGG | + | chr7_2:77956856-77956875 | Msa1078930:CDS | 20.0% |
| !!! | TTTTCTTTATGTTTTGTGAT+GGG | + | chr7_2:77956857-77956876 | Msa1078930:CDS | 20.0% |
| !! | AATATTAAAGATTTACCTGT+TGG | - | chr7_2:77956902-77956921 | None:intergenic | 20.0% |
| !!! | CTCAAAAAAACATTTTGATA+AGG | - | chr7_2:77957148-77957167 | None:intergenic | 20.0% |
| !!! | AAATGTTTTTTTGAGAAGAT+TGG | + | chr7_2:77957153-77957172 | Msa1078930:CDS | 20.0% |
| !!! | AATTAGTTTAGCAAATAGAA+GGG | - | chr7_2:77957470-77957489 | None:intergenic | 20.0% |
| !!! | AAATTAGTTTAGCAAATAGA+AGG | - | chr7_2:77957471-77957490 | None:intergenic | 20.0% |
| !!! | TGTTAATTTGTTATGTCTAA+TGG | + | chr7_2:77957521-77957540 | Msa1078930:intron | 20.0% |
| !! | TTAAAAAAAATGTAGCTAGT+AGG | + | chr7_2:77957584-77957603 | Msa1078930:intron | 20.0% |
| !! | AGTGTAGATATTTAACAATT+TGG | - | chr7_2:77957934-77957953 | None:intergenic | 20.0% |
| !! | AATGTTATAATTACACATCA+TGG | + | chr7_2:77958352-77958371 | Msa1078930:intron | 20.0% |
| !! | ACAGTTAAATATATGAGTAA+TGG | - | chr7_2:77958912-77958931 | None:intergenic | 20.0% |
| !! | AAAATTGTCAAGTTTATAAC+GGG | + | chr7_2:77958963-77958982 | Msa1078930:intron | 20.0% |
| !!! | AAGCAATTTATTTGAGTTTA+GGG | - | chr7_2:77959011-77959030 | None:intergenic | 20.0% |
| !! | TCAAATACACTTATAAAGTT+AGG | + | chr7_2:77959030-77959049 | Msa1078930:intron | 20.0% |
| !! | AAAATGTTAAATAGTTTGGT+TGG | + | chr7_2:77959143-77959162 | Msa1078930:intron | 20.0% |
| !!! | TTTTTCCTTTTTAAAGTAGT+TGG | - | chr7_2:77959322-77959341 | None:intergenic | 20.0% |
| !!! | AATTGAGATATATCTAAAGT+AGG | - | chr7_2:77959505-77959524 | None:intergenic | 20.0% |
| !!! | AAATATTAGCTTTTGTTTGG+AGG | - | chr7_2:77956588-77956607 | None:intergenic | 25.0% |
| ! | ATTTACCAAAAAATTCAGGT+TGG | - | chr7_2:77956759-77956778 | None:intergenic | 25.0% |
| !!! | TTTTTTGCTTCTTTAGAAGA+TGG | + | chr7_2:77956778-77956797 | Msa1078930:exon | 25.0% |
| !!! | TTTTTGCTTCTTTAGAAGAT+GGG | + | chr7_2:77956779-77956798 | Msa1078930:exon | 25.0% |
| ! | CAAAGAAAAAAACCCATTTA+TGG | + | chr7_2:77956816-77956835 | Msa1078930:CDS | 25.0% |
| !!! | TTTTTTGTTGACATTTGAGA+AGG | - | chr7_2:77956980-77956999 | None:intergenic | 25.0% |
| ! | TCTCAAATGTCAACAAAAAA+TGG | + | chr7_2:77956980-77956999 | Msa1078930:CDS | 25.0% |
| ! | CAAAAAATGGTAACAAAAGT+TGG | + | chr7_2:77956993-77957012 | Msa1078930:CDS | 25.0% |
| !! | ACTATGATTAGAAGTCTTTT+AGG | - | chr7_2:77957103-77957122 | None:intergenic | 25.0% |
| ! | GAAGATCATAAACATTAGAA+AGG | - | chr7_2:77957405-77957424 | None:intergenic | 25.0% |
| !! | ATTAGTTTAGCAAATAGAAG+GGG | - | chr7_2:77957469-77957488 | None:intergenic | 25.0% |
| ! | CTACTAGCTACATTAAAATT+AGG | - | chr7_2:77957560-77957579 | None:intergenic | 25.0% |
| !!! | CTAATTTTAATGTAGCTAGT+AGG | + | chr7_2:77957558-77957577 | Msa1078930:intron | 25.0% |
| !!! | AACAACTTTTTTCAATTGGA+TGG | + | chr7_2:77957624-77957643 | Msa1078930:intron | 25.0% |
| !! | TTTTCAATTGGATGGAAAAA+AGG | + | chr7_2:77957632-77957651 | Msa1078930:intron | 25.0% |
| ! | TTTAGTGACACCAATAAATT+TGG | + | chr7_2:77957739-77957758 | Msa1078930:intron | 25.0% |
| !! | AATCATTCTAAAAACATCTC+AGG | + | chr7_2:77957820-77957839 | Msa1078930:intron | 25.0% |
| !!! | ATCACTTTAGTCTTTTTGAA+TGG | - | chr7_2:77957856-77957875 | None:intergenic | 25.0% |
| !! | TTTTTCTTTTCAAATCACCT+AGG | - | chr7_2:77958049-77958068 | None:intergenic | 25.0% |
| ! | AGAAAAAGAGTGATAATTGA+AGG | + | chr7_2:77958163-77958182 | Msa1078930:CDS | 25.0% |
| ! | GCAAAACTTGAAATATGAAT+GGG | - | chr7_2:77958259-77958278 | None:intergenic | 25.0% |
| ! | TGCAAAACTTGAAATATGAA+TGG | - | chr7_2:77958260-77958279 | None:intergenic | 25.0% |
| ! | TATCAAAACCAAACTTCAAT+TGG | + | chr7_2:77958398-77958417 | Msa1078930:intron | 25.0% |
| ! | AACATATACCAATTGAAGTT+TGG | - | chr7_2:77958409-77958428 | None:intergenic | 25.0% |
| ! | ATTTGAAGAAAAGTTGTATG+CGG | + | chr7_2:77958525-77958544 | Msa1078930:intron | 25.0% |
| ! | TTGCTTCAATAATAAAACTC+TGG | + | chr7_2:77958680-77958699 | Msa1078930:intron | 25.0% |
| ! | TGCTTCAATAATAAAACTCT+GGG | + | chr7_2:77958681-77958700 | Msa1078930:intron | 25.0% |
| !!! | TTCGCTTTTTTCAAATTTTG+AGG | - | chr7_2:77958746-77958765 | None:intergenic | 25.0% |
| ! | GTAAATTCCTATTTGTCTAT+GGG | + | chr7_2:77958869-77958888 | Msa1078930:intron | 25.0% |
| ! | TATGAGTAATGGCTTAAATA+GGG | - | chr7_2:77958901-77958920 | None:intergenic | 25.0% |
| ! | ATATGAGTAATGGCTTAAAT+AGG | - | chr7_2:77958902-77958921 | None:intergenic | 25.0% |
| ! | AAATTGTCAAGTTTATAACG+GGG | + | chr7_2:77958964-77958983 | Msa1078930:intron | 25.0% |
| !! | GAAGCAATTTATTTGAGTTT+AGG | - | chr7_2:77959012-77959031 | None:intergenic | 25.0% |
| ! | ATACACTTATAAAGTTAGGT+TGG | + | chr7_2:77959034-77959053 | Msa1078930:intron | 25.0% |
| ! | TTTGGTTGGATATATCTATT+TGG | + | chr7_2:77959157-77959176 | Msa1078930:intron | 25.0% |
| ! | AATAAAATTTCAAGCAGTGA+AGG | - | chr7_2:77959269-77959288 | None:intergenic | 25.0% |
| ! | TACGCAAGAATAAAAAAACT+AGG | + | chr7_2:77959345-77959364 | Msa1078930:intron | 25.0% |
| ! | ACTACTATACATCATATGTT+AGG | + | chr7_2:77959824-77959843 | Msa1078930:three_prime_UTR | 25.0% |
| ! | CTACTATACATCATATGTTA+GGG | + | chr7_2:77959825-77959844 | Msa1078930:three_prime_UTR | 25.0% |
| ! | TACTATACATCATATGTTAG+GGG | + | chr7_2:77959826-77959845 | Msa1078930:three_prime_UTR | 25.0% |
| !!! | ATTTTGTTAGCTTACGTAAA+AGG | + | chr7_2:77959992-77960011 | Msa1078930:three_prime_UTR | 25.0% |
| !! | TTGGAGGTATTTCATATGTA+AGG | - | chr7_2:77956572-77956591 | None:intergenic | 30.0% |
| TGAAATGTTGAGGTTATGAT+TGG | - | chr7_2:77956623-77956642 | None:intergenic | 30.0% | |
| ATATAGTTTAGGTGCATTTG+TGG | - | chr7_2:77956673-77956692 | None:intergenic | 30.0% | |
| CATTGCTTTCTTCCATAAAT+GGG | - | chr7_2:77956831-77956850 | None:intergenic | 30.0% | |
| AAAAAAATGTAGCTAGTAGG+TGG | + | chr7_2:77957587-77957606 | Msa1078930:intron | 30.0% | |
| AGGCTAGTAAGAAAATCTTT+AGG | + | chr7_2:77957652-77957671 | Msa1078930:intron | 30.0% | |
| TAATCATCATCACTAGTGTT+AGG | - | chr7_2:77957682-77957701 | None:intergenic | 30.0% | |
| AGTGTGAAATAAAATCACCT+AGG | - | chr7_2:77958025-77958044 | None:intergenic | 30.0% | |
| !! | GATTTTATTTCACACTTCCT+AGG | + | chr7_2:77958029-77958048 | Msa1078930:intron | 30.0% |
| TATTCATTTGACAATTGAGC+AGG | + | chr7_2:77958101-77958120 | Msa1078930:intron | 30.0% | |
| ATTCATTTGACAATTGAGCA+GGG | + | chr7_2:77958102-77958121 | Msa1078930:intron | 30.0% | |
| GCTTCAATAATAAAACTCTG+GGG | + | chr7_2:77958682-77958701 | Msa1078930:intron | 30.0% | |
| CGAAAAAAAACTTGTACCTA+CGG | + | chr7_2:77958762-77958781 | Msa1078930:intron | 30.0% | |
| !! | AGATATTTAGTGACGGATTT+CGG | - | chr7_2:77958788-77958807 | None:intergenic | 30.0% |
| CGGAAATAGATATTTAGTGA+CGG | - | chr7_2:77958795-77958814 | None:intergenic | 30.0% | |
| CACTAAATATCTATTTCCGT+AGG | + | chr7_2:77958796-77958815 | Msa1078930:intron | 30.0% | |
| GTCAATTATGCATTATCCAT+AGG | + | chr7_2:77958847-77958866 | Msa1078930:intron | 30.0% | |
| GACAAATAGGAATTTACCTA+TGG | - | chr7_2:77958866-77958885 | None:intergenic | 30.0% | |
| GGTAAATTCCTATTTGTCTA+TGG | + | chr7_2:77958868-77958887 | Msa1078930:intron | 30.0% | |
| !!! | CTTTTTAAAGTAGTTGGATG+AGG | - | chr7_2:77959316-77959335 | None:intergenic | 30.0% |
| ! | CTCATCCAACTACTTTAAAA+AGG | + | chr7_2:77959314-77959333 | Msa1078930:intron | 30.0% |
| ! | ATGACATGTGATAATGCATT+TGG | + | chr7_2:77959456-77959475 | Msa1078930:intron | 30.0% |
| ! | ATCTAAAGTAGGTTCTATCT+TGG | - | chr7_2:77959494-77959513 | None:intergenic | 30.0% |
| AAAATAGCAACAAAGCTCTT+AGG | - | chr7_2:77959628-77959647 | None:intergenic | 30.0% | |
| !!! | TGCTATTTTGTCCTAATTTG+AGG | + | chr7_2:77959639-77959658 | Msa1078930:intron | 30.0% |
| AAAAGAAGTAGCCTCAAATT+AGG | - | chr7_2:77959653-77959672 | None:intergenic | 30.0% | |
| TATACGGAAGACAATTACAA+AGG | - | chr7_2:77959950-77959969 | None:intergenic | 30.0% | |
| ! | CTTCAAATGTTTTGCTTCAT+AGG | - | chr7_2:77960025-77960044 | None:intergenic | 30.0% |
| ! | TGGAAACGTTTGAAATGTTG+AGG | - | chr7_2:77956633-77956652 | None:intergenic | 35.0% |
| ! | TGGCAGCACATATTTGTTAA+TGG | - | chr7_2:77956653-77956672 | None:intergenic | 35.0% |
| TTGGAACAGAATGAAGAGAA+GGG | - | chr7_2:77956713-77956732 | None:intergenic | 35.0% | |
| !! | CCAAAAAATTCAGGTTGGAA+TGG | - | chr7_2:77956754-77956773 | None:intergenic | 35.0% |
| !!! | CCATTCCAACCTGAATTTTT+TGG | + | chr7_2:77956751-77956770 | Msa1078930:five_prime_UTR | 35.0% |
| GCATTGCTTTCTTCCATAAA+TGG | - | chr7_2:77956832-77956851 | None:intergenic | 35.0% | |
| !!! | TTTGTGATGGGTTTTTTCAC+AGG | + | chr7_2:77956869-77956888 | Msa1078930:CDS | 35.0% |
| !!! | GTTTTTTGGCTATGGATTCT+AGG | - | chr7_2:77957031-77957050 | None:intergenic | 35.0% |
| !!! | TTGTTGCTGCTGTTGTTTTT+TGG | - | chr7_2:77957045-77957064 | None:intergenic | 35.0% |
| ! | AGTCTTTTAGGCTTCAATTG+AGG | - | chr7_2:77957091-77957110 | None:intergenic | 35.0% |
| !!! | TAAGGTAGTTTTGTGCTTGT+TGG | - | chr7_2:77957130-77957149 | None:intergenic | 35.0% |
| TTGTTGATCAACCATTGCTT+TGG | + | chr7_2:77957191-77957210 | Msa1078930:CDS | 35.0% | |
| GGAAAACTGGTATCATGTAT+AGG | + | chr7_2:77957263-77957282 | Msa1078930:CDS | 35.0% | |
| ! | TGTTTTCAGTGAAGAGTTCA+TGG | + | chr7_2:77957291-77957310 | Msa1078930:CDS | 35.0% |
| ATTGAGCATCATAGACTAAG+TGG | + | chr7_2:77957361-77957380 | Msa1078930:CDS | 35.0% | |
| TTGAGCATCATAGACTAAGT+GGG | + | chr7_2:77957362-77957381 | Msa1078930:CDS | 35.0% | |
| ACTCAATATCTCTAAGCTGT+TGG | - | chr7_2:77957435-77957454 | None:intergenic | 35.0% | |
| !! | TTGGTGTCACTAAAATTCGA+GGG | - | chr7_2:77957733-77957752 | None:intergenic | 35.0% |
| !! | ATTGGTGTCACTAAAATTCG+AGG | - | chr7_2:77957734-77957753 | None:intergenic | 35.0% |
| CATGATATTTCACACTTCCT+AGG | + | chr7_2:77958005-77958024 | Msa1078930:intron | 35.0% | |
| TTTGCAAGTAATAATGCCGT+TGG | - | chr7_2:77958142-77958161 | None:intergenic | 35.0% | |
| ATTCAATAGCTCCATTCTCT+GGG | + | chr7_2:77958279-77958298 | Msa1078930:CDS | 35.0% | |
| ATCAGTTAAGGATACTTCTC+AGG | + | chr7_2:77958327-77958346 | Msa1078930:CDS | 35.0% | |
| TCTATCATTTACGCTCTGAT+AGG | + | chr7_2:77958646-77958665 | Msa1078930:intron | 35.0% | |
| ! | TCAATAATAAAACTCTGGGG+AGG | + | chr7_2:77958685-77958704 | Msa1078930:intron | 35.0% |
| ! | GTCTTTCAGACTTTTACCTA+CGG | - | chr7_2:77958815-77958834 | None:intergenic | 35.0% |
| TCCTATTTGTCTATGGGTAA+AGG | + | chr7_2:77958875-77958894 | Msa1078930:intron | 35.0% | |
| !! | AGTTAGGTTGGATATCTTGT+TGG | + | chr7_2:77959046-77959065 | Msa1078930:intron | 35.0% |
| TAAAGTAGTTGGATGAGGTT+GGG | - | chr7_2:77959311-77959330 | None:intergenic | 35.0% | |
| TTAAAGTAGTTGGATGAGGT+TGG | - | chr7_2:77959312-77959331 | None:intergenic | 35.0% | |
| CACATGTCATAGACATTATG+CGG | - | chr7_2:77959446-77959465 | None:intergenic | 35.0% | |
| AGGTTCTATCTTGGAGTAAA+AGG | - | chr7_2:77959485-77959504 | None:intergenic | 35.0% | |
| !! | TTGTCACTTTGCATTTCATG+TGG | - | chr7_2:77959540-77959559 | None:intergenic | 35.0% |
| !! | ATTTGAGGCTACTTCTTTTG+TGG | + | chr7_2:77959654-77959673 | Msa1078930:intron | 35.0% |
| CACAAACTTGATTGAGTTCT+AGG | - | chr7_2:77959684-77959703 | None:intergenic | 35.0% | |
| TAGAAACTAGTGCTTGGAAA+TGG | - | chr7_2:77959804-77959823 | None:intergenic | 35.0% | |
| AGTAGTTAGAAACTAGTGCT+TGG | - | chr7_2:77959810-77959829 | None:intergenic | 35.0% | |
| TATGAAAGCAACTCTTGTAC+TGG | - | chr7_2:77959895-77959914 | None:intergenic | 35.0% | |
| GTTGGAACAGAATGAAGAGA+AGG | - | chr7_2:77956714-77956733 | None:intergenic | 40.0% | |
| ! | AGAAGATGGGTTCAGTAGAA+AGG | + | chr7_2:77956792-77956811 | Msa1078930:exon | 40.0% |
| GTTGACATTTGAGAAGGTTG+TGG | - | chr7_2:77956974-77956993 | None:intergenic | 40.0% | |
| !!! | CTGCTGTTGTTTTTTGGCTA+TGG | - | chr7_2:77957039-77957058 | None:intergenic | 40.0% |
| TTAGGCTTCAATTGAGGTAG+TGG | - | chr7_2:77957085-77957104 | None:intergenic | 40.0% | |
| TCGACAACAATCCAAAGCAA+TGG | - | chr7_2:77957205-77957224 | None:intergenic | 40.0% | |
| CTCTGGCAATTCAGTTGATT+CGG | - | chr7_2:77957236-77957255 | None:intergenic | 40.0% | |
| CTGAATTGCCAGAGATATTG+AGG | + | chr7_2:77957242-77957261 | Msa1078930:CDS | 40.0% | |
| ! | CCAGTTTTCCTCAATATCTC+TGG | - | chr7_2:77957253-77957272 | None:intergenic | 40.0% |
| CCAGAGATATTGAGGAAAAC+TGG | + | chr7_2:77957250-77957269 | Msa1078930:CDS | 40.0% | |
| AGCAAATAGAAGGGGTAGAA+AGG | - | chr7_2:77957461-77957480 | None:intergenic | 40.0% | |
| ACTTGAGAAGAGTCACAAAC+TGG | - | chr7_2:77958190-77958209 | None:intergenic | 40.0% | |
| TGTGACTCTTCTCAAGTCAT+TGG | + | chr7_2:77958193-77958212 | Msa1078930:CDS | 40.0% | |
| ACTCTTCTCAAGTCATTGGA+TGG | + | chr7_2:77958197-77958216 | Msa1078930:CDS | 40.0% | |
| CATTCAATAGCTCCATTCTC+TGG | + | chr7_2:77958278-77958297 | Msa1078930:CDS | 40.0% | |
| GCCTTTACCCATAGACAAAT+AGG | - | chr7_2:77958879-77958898 | None:intergenic | 40.0% | |
| AAAGCTCTTAGGTAGAGTAG+AGG | - | chr7_2:77959617-77959636 | None:intergenic | 40.0% | |
| !! | GCAAGTAGTTCTAGAAGATG+AGG | + | chr7_2:77959706-77959725 | Msa1078930:CDS | 40.0% |
| ! | AGAAGATGAGGCTAAGTTGA+AGG | + | chr7_2:77959718-77959737 | Msa1078930:CDS | 40.0% |
| ! | GAAGATGAGGCTAAGTTGAA+GGG | + | chr7_2:77959719-77959738 | Msa1078930:CDS | 40.0% |
| !!! | AGCAAGATTTTGGAGCAGTA+CGG | - | chr7_2:77959752-77959771 | None:intergenic | 40.0% |
| ACTGCTCCAAAATCTTGCTA+TGG | + | chr7_2:77959753-77959772 | Msa1078930:CDS | 40.0% | |
| ! | GAAACGCCATAGCAAGATTT+TGG | - | chr7_2:77959762-77959781 | None:intergenic | 40.0% |
| ! | TTCACAGGTTTAGCTCCAAC+AGG | + | chr7_2:77956884-77956903 | Msa1078930:CDS | 45.0% |
| CAGTGAAGAGTTCATGGACT+TGG | + | chr7_2:77957297-77957316 | Msa1078930:CDS | 45.0% | |
| AGTGGGATTGTTCACTTTGC+TGG | + | chr7_2:77957379-77957398 | Msa1078930:CDS | 45.0% | |
| TGACAATTGAGCAGGGTCTT+TGG | + | chr7_2:77958109-77958128 | Msa1078930:intron | 45.0% | |
| GGGTCGAACTTCATCAGTTA+AGG | + | chr7_2:77958315-77958334 | Msa1078930:CDS | 45.0% | |
| !!! | AAGATTTTGGAGCAGTACGG+TGG | - | chr7_2:77959749-77959768 | None:intergenic | 45.0% |
| TGGCTATGGATTCTAGGTGC+TGG | - | chr7_2:77957025-77957044 | None:intergenic | 50.0% | |
| !! | TGAGCAGGGTCTTTGGAACA+TGG | + | chr7_2:77958116-77958135 | Msa1078930:intron | 50.0% |
| !! | GGTCTTTGGAACATGGCCAA+CGG | + | chr7_2:77958123-77958142 | Msa1078930:CDS | 50.0% |
| AAGTTCGACCCCATCTCTCA+GGG | - | chr7_2:77958306-77958325 | None:intergenic | 50.0% | |
| TCTCTCAGGGTCCCAGAGAA+TGG | - | chr7_2:77958293-77958312 | None:intergenic | 55.0% | |
| !! | TTCTCTGGGACCCTGAGAGA+TGG | + | chr7_2:77958293-77958312 | Msa1078930:CDS | 55.0% |
| !! | TCTCTGGGACCCTGAGAGAT+GGG | + | chr7_2:77958294-77958313 | Msa1078930:CDS | 55.0% |
| GAAGTTCGACCCCATCTCTC+AGG | - | chr7_2:77958307-77958326 | None:intergenic | 55.0% | |
| GGCCTTGATGCACTTGCACA+GGG | - | chr7_2:77958711-77958730 | None:intergenic | 55.0% | |
| TGCAAGTGCATCAAGGCCCT+TGG | + | chr7_2:77958713-77958732 | Msa1078930:intron | 55.0% | |
| !!! | ATTTTGAGGCCCCGTGCCAA+GGG | - | chr7_2:77958732-77958751 | None:intergenic | 55.0% |
| !!! | AATTTTGAGGCCCCGTGCCA+AGG | - | chr7_2:77958733-77958752 | None:intergenic | 55.0% |
| !! | TAGTGACGGATTTCGGCCGT+AGG | - | chr7_2:77958781-77958800 | None:intergenic | 55.0% |
| TAACGGGGCCTCCGAATTGT+CGG | + | chr7_2:77958979-77958998 | Msa1078930:intron | 55.0% | |
| !! | CTCTGGGACCCTGAGAGATG+GGG | + | chr7_2:77958295-77958314 | Msa1078930:CDS | 60.0% |
| GGCCCTGTGCAAGTGCATCA+AGG | + | chr7_2:77958706-77958725 | Msa1078930:intron | 60.0% | |
| GGGCCTTGATGCACTTGCAC+AGG | - | chr7_2:77958712-77958731 | None:intergenic | 60.0% | |
| GTGCATCAAGGCCCTTGGCA+CGG | + | chr7_2:77958718-77958737 | Msa1078930:intron | 60.0% | |
| TGCATCAAGGCCCTTGGCAC+GGG | + | chr7_2:77958719-77958738 | Msa1078930:intron | 60.0% | |
| AACGGGGCCTCCGAATTGTC+GGG | + | chr7_2:77958980-77958999 | Msa1078930:intron | 60.0% | |
| TAGGGCCGTCCCCGACAATT+CGG | - | chr7_2:77958993-77959012 | None:intergenic | 60.0% | |
| GCATCAAGGCCCTTGGCACG+GGG | + | chr7_2:77958720-77958739 | Msa1078930:intron | 65.0% | |
| ACGGGGCCTCCGAATTGTCG+GGG | + | chr7_2:77958981-77959000 | Msa1078930:intron | 65.0% | |
| GGCCTCCGAATTGTCGGGGA+CGG | + | chr7_2:77958985-77959004 | Msa1078930:intron | 65.0% | |
| GGCCGTCCCCGACAATTCGG+AGG | - | chr7_2:77958990-77959009 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 77956558 | 77960089 | 77956558 | ID=Msa1078930;Name=Msa1078930 |
| chr7_2 | mRNA | 77956558 | 77960089 | 77956558 | ID=Msa1078930-mRNA-1;Parent=Msa1078930;Name=Msa1078930-mRNA-1;_AED=0.00;_eAED=0.00;_QI=239|1|1|1|1|1|3|272|337 |
| chr7_2 | exon | 77956558 | 77957452 | 77956558 | ID=Msa1078930-mRNA-1:exon:19275;Parent=Msa1078930-mRNA-1 |
| chr7_2 | exon | 77958123 | 77958348 | 77958123 | ID=Msa1078930-mRNA-1:exon:19276;Parent=Msa1078930-mRNA-1 |
| chr7_2 | exon | 77959686 | 77960089 | 77959686 | ID=Msa1078930-mRNA-1:exon:19277;Parent=Msa1078930-mRNA-1 |
| chr7_2 | five_prime_UTR | 77956558 | 77956796 | 77956558 | ID=Msa1078930-mRNA-1:five_prime_utr;Parent=Msa1078930-mRNA-1 |
| chr7_2 | CDS | 77956797 | 77957452 | 77956797 | ID=Msa1078930-mRNA-1:cds;Parent=Msa1078930-mRNA-1 |
| chr7_2 | CDS | 77958123 | 77958348 | 77958123 | ID=Msa1078930-mRNA-1:cds;Parent=Msa1078930-mRNA-1 |
| chr7_2 | CDS | 77959686 | 77959817 | 77959686 | ID=Msa1078930-mRNA-1:cds;Parent=Msa1078930-mRNA-1 |
| chr7_2 | three_prime_UTR | 77959818 | 77960089 | 77959818 | ID=Msa1078930-mRNA-1:three_prime_utr;Parent=Msa1078930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
