Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421890 | XP_003601793.2 | 97.647 | 595 | 14 | 0 | 1 | 595 | 1 | 595 | 0.0 | 1195 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421890 | sp|Q9C7G0|MA658_ARATH | 62.766 | 564 | 203 | 4 | 1 | 562 | 1 | 559 | 0.0 | 711 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421890 | G7JC01 | 97.647 | 595 | 14 | 0 | 1 | 595 | 1 | 595 | 0.0 | 1195 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028620 | Msa0421890 | 0.807934 | 3.965442e-50 | -8.615850e-47 |
| Msa0191020 | Msa0421890 | 0.804716 | 1.889750e-49 | -8.615850e-47 |
| Msa0233320 | Msa0421890 | 0.804565 | 2.032122e-49 | -8.615850e-47 |
| Msa0373310 | Msa0421890 | 0.975939 | 6.994175e-141 | -8.615850e-47 |
| Msa0392380 | Msa0421890 | 0.814932 | 1.197546e-51 | -8.615850e-47 |
| Msa0421890 | Msa0425170 | 0.809658 | 1.696720e-50 | -8.615850e-47 |
| Msa0421890 | Msa0440320 | 0.819036 | 1.433937e-52 | -8.615850e-47 |
| Msa0421890 | Msa0467770 | 0.968363 | 1.431960e-128 | -8.615850e-47 |
| Msa0421890 | Msa0487500 | 0.824272 | 8.831918e-54 | -8.615850e-47 |
| Msa0421890 | Msa0514170 | 0.959760 | 8.476335e-118 | -8.615850e-47 |
| Msa0421890 | Msa0655560 | 0.800951 | 1.132768e-48 | -8.615850e-47 |
| Msa0421890 | Msa0964310 | 0.803364 | 3.611996e-49 | -8.615850e-47 |
| Msa0421890 | Msa1078930 | 0.802499 | 5.450703e-49 | -8.615850e-47 |
| Msa0421890 | Msa1106510 | 0.803980 | 2.690522e-49 | -8.615850e-47 |
| Msa0421890 | Msa1426070 | 0.804081 | 2.563588e-49 | -8.615850e-47 |
| Msa0242490 | Msa0421890 | 0.807787 | 4.262624e-50 | -8.615850e-47 |
| Msa0243600 | Msa0421890 | 0.814257 | 1.688983e-51 | -8.615850e-47 |
| Msa0280690 | Msa0421890 | 0.807767 | 4.303823e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421890 | MtrunA17_Chr3g0122591 | 96.352 | 603 | 14 | 1 | 1 | 595 | 1 | 603 | 0.0 | 1188 |
| Msa0421890 | MtrunA17_Chr5g0444881 | 45.997 | 587 | 292 | 8 | 17 | 595 | 13 | 582 | 1.50e-164 | 481 |
| Msa0421890 | MtrunA17_Chr6g0476051 | 45.312 | 512 | 267 | 8 | 17 | 524 | 14 | 516 | 1.53e-139 | 422 |
| Msa0421890 | MtrunA17_Chr1g0164981 | 41.166 | 549 | 304 | 9 | 1 | 536 | 1 | 543 | 2.99e-131 | 397 |
| Msa0421890 | MtrunA17_Chr1g0188201 | 40.728 | 577 | 318 | 8 | 17 | 588 | 13 | 570 | 8.18e-131 | 400 |
| Msa0421890 | MtrunA17_Chr8g0354131 | 40.253 | 554 | 305 | 8 | 18 | 565 | 13 | 546 | 1.81e-125 | 381 |
| Msa0421890 | MtrunA17_Chr7g0245851 | 39.448 | 507 | 297 | 5 | 8 | 512 | 355 | 853 | 5.54e-107 | 345 |
| Msa0421890 | MtrunA17_Chr8g0345241 | 36.981 | 530 | 287 | 12 | 4 | 520 | 7 | 502 | 4.51e-87 | 279 |
| Msa0421890 | MtrunA17_Chr4g0039561 | 57.692 | 52 | 22 | 0 | 28 | 79 | 144 | 195 | 7.24e-14 | 70.9 |
| Msa0421890 | MtrunA17_Chr5g0410361 | 43.023 | 86 | 46 | 2 | 241 | 326 | 11 | 93 | 1.51e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421890 | AT1G27920.1 | 62.766 | 564 | 203 | 4 | 1 | 562 | 1 | 559 | 0.0 | 711 |
| Msa0421890 | AT1G27920.2 | 68.550 | 407 | 125 | 2 | 1 | 405 | 1 | 406 | 0.0 | 573 |
| Msa0421890 | AT4G26760.1 | 46.595 | 558 | 279 | 6 | 15 | 559 | 11 | 562 | 2.77e-160 | 471 |
| Msa0421890 | AT5G55230.3 | 48.333 | 540 | 265 | 6 | 12 | 544 | 8 | 540 | 8.34e-160 | 470 |
| Msa0421890 | AT5G55230.1 | 48.333 | 540 | 265 | 6 | 12 | 544 | 8 | 540 | 8.34e-160 | 470 |
| Msa0421890 | AT5G55230.2 | 45.870 | 569 | 265 | 7 | 12 | 544 | 8 | 569 | 3.12e-153 | 454 |
| Msa0421890 | AT2G01910.1 | 41.734 | 496 | 280 | 4 | 18 | 506 | 16 | 509 | 3.73e-134 | 405 |
| Msa0421890 | AT2G38720.1 | 43.625 | 502 | 273 | 5 | 23 | 522 | 12 | 505 | 2.11e-132 | 398 |
| Msa0421890 | AT1G14690.1 | 39.734 | 526 | 304 | 5 | 18 | 532 | 16 | 539 | 1.35e-129 | 393 |
| Msa0421890 | AT1G14690.2 | 39.734 | 526 | 304 | 5 | 18 | 532 | 16 | 539 | 1.35e-129 | 393 |
| Msa0421890 | AT5G51600.1 | 43.182 | 528 | 286 | 5 | 16 | 538 | 12 | 530 | 3.26e-126 | 387 |
| Msa0421890 | AT2G01910.2 | 41.064 | 470 | 268 | 4 | 44 | 506 | 1 | 468 | 1.03e-123 | 377 |
| Msa0421890 | AT3G60840.1 | 37.643 | 526 | 312 | 7 | 16 | 538 | 12 | 524 | 2.61e-109 | 343 |
| Msa0421890 | AT5G62250.2 | 38.068 | 528 | 314 | 7 | 12 | 530 | 2 | 525 | 5.33e-96 | 304 |
| Msa0421890 | AT5G62250.1 | 38.068 | 528 | 314 | 7 | 12 | 530 | 2 | 525 | 5.33e-96 | 304 |
Find 151 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCAAATTTAGATAATT+TGG | 0.060973 | 3_2:-70935336 | Msa0421890:intron |
| ATTCTTGACAAAGAAATTTA+AGG | 0.140374 | 3_2:+70931486 | None:intergenic |
| CGAGCATGAGTTAATCAATT+TGG | 0.157195 | 3_2:+70931360 | None:intergenic |
| CCAGTTCCTCCTGCTTCTTT+TGG | 0.184387 | 3_2:+70933536 | None:intergenic |
| CTTCCATTTAAGCTTCTATT+TGG | 0.209135 | 3_2:+70931720 | None:intergenic |
| ATCAAATCTTTGGAATCTTA+TGG | 0.243314 | 3_2:-70933799 | Msa0421890:CDS |
| TAGATAATTTGGGATGAAAT+TGG | 0.251538 | 3_2:-70935325 | Msa0421890:CDS |
| GCATTCTACTGACCATTATA+CGG | 0.261311 | 3_2:+70933035 | None:intergenic |
| GCAAAACACTATCAAATCTT+TGG | 0.266126 | 3_2:-70933809 | Msa0421890:CDS |
| TCCTCCAGTATTTCCATTAG+AGG | 0.271034 | 3_2:+70932043 | None:intergenic |
| TTGCCTGCAGTTCCTGTAAT+AGG | 0.273628 | 3_2:+70935450 | None:intergenic |
| CTTCCAAATAGAAGCTTAAA+TGG | 0.280847 | 3_2:-70931723 | Msa0421890:CDS |
| TCTATCATGTCCACACATTC+TGG | 0.292323 | 3_2:-70931519 | Msa0421890:CDS |
| AAAGAAATTTAAGGAGAAAA+TGG | 0.296087 | 3_2:+70931495 | None:intergenic |
| AAGAGTGCCTTGAGGTTTAC+AGG | 0.300573 | 3_2:-70935258 | Msa0421890:CDS |
| ATCTCTAGAGTTAGACTTCC+TGG | 0.307135 | 3_2:+70933699 | None:intergenic |
| GATTTGCAGCTTCACCATTT+AGG | 0.323978 | 3_2:-70933831 | Msa0421890:intron |
| CTTTCCTCAAGCGCATTTCC+CGG | 0.325728 | 3_2:+70934683 | None:intergenic |
| TCAAGGTATATCCTTCATTA+AGG | 0.332212 | 3_2:-70931616 | Msa0421890:CDS |
| GGAAAAGGTTCTGCTGGATA+TGG | 0.335210 | 3_2:-70935284 | Msa0421890:CDS |
| TTCTCAAATTTAGATAATTT+GGG | 0.339890 | 3_2:-70935335 | Msa0421890:intron |
| TCACTTGCACAGCTCTGAAT+TGG | 0.353675 | 3_2:+70934647 | None:intergenic |
| CCCAATGGGTATCCAACAAC+TGG | 0.354408 | 3_2:-70931664 | Msa0421890:CDS |
| GAATCCATCAACAAGCAAAA+TGG | 0.363080 | 3_2:+70931263 | None:intergenic |
| GAGCATGAGTTAATCAATTT+GGG | 0.364598 | 3_2:+70931361 | None:intergenic |
| ATCTATGTAGGTTCCTCTAA+TGG | 0.370668 | 3_2:-70932056 | Msa0421890:intron |
| ACACAGCTTGTCCACAATCT+TGG | 0.385265 | 3_2:-70934362 | Msa0421890:CDS |
| AGCTGAACGTGCCCGTATAA+TGG | 0.385407 | 3_2:-70933047 | Msa0421890:CDS |
| CTCGTGCGGATTCCTATTAC+AGG | 0.385809 | 3_2:-70935462 | Msa0421890:CDS |
| TTTGTATGTTCACAACAGTA+TGG | 0.401421 | 3_2:+70931427 | None:intergenic |
| CACTGAAGGGTACCATCAAA+TGG | 0.402116 | 3_2:-70935534 | Msa0421890:exon |
| CTTGGCGAACGATCTCTTCC+TGG | 0.402388 | 3_2:-70935145 | Msa0421890:CDS |
| CTCATTTACTGTAACGATTG+AGG | 0.405166 | 3_2:+70934576 | None:intergenic |
| GGCTCATTCCAGACACCAAT+TGG | 0.407854 | 3_2:-70935512 | Msa0421890:CDS |
| CCAAAAGAAGCAGGAGGAAC+TGG | 0.410765 | 3_2:-70933536 | Msa0421890:CDS |
| GGTTCCTCTAATGGAAATAC+TGG | 0.415098 | 3_2:-70932047 | Msa0421890:CDS |
| AGAATTTCTGCAGAAATTGC+AGG | 0.416093 | 3_2:-70934616 | Msa0421890:CDS |
| CACAGCTTGTCCACAATCTT+GGG | 0.424296 | 3_2:-70934361 | Msa0421890:CDS |
| TGTTGTTTGATCCCAGTTGT+TGG | 0.428436 | 3_2:+70931652 | None:intergenic |
| TTCGAGCAGGAAGGCTATAA+TGG | 0.429177 | 3_2:-70933273 | Msa0421890:CDS |
| GTAATGTAAGTGTAAGCTTT+GGG | 0.434845 | 3_2:+70935714 | None:intergenic |
| GGATCAAACAACATAAATTC+AGG | 0.435219 | 3_2:-70931642 | Msa0421890:CDS |
| TTCTCATTCCAATTGGTGTC+TGG | 0.435378 | 3_2:+70935504 | None:intergenic |
| GGTAATGTAAGTGTAAGCTT+TGG | 0.437291 | 3_2:+70935713 | None:intergenic |
| AAGCGCATTTCCCGGAGTGC+TGG | 0.442192 | 3_2:+70934691 | None:intergenic |
| TCAAGCTGGGGTGGAGTTGA+AGG | 0.444352 | 3_2:+70934317 | None:intergenic |
| TAAATTCACCTGCGTTTATG+AGG | 0.449706 | 3_2:+70933449 | None:intergenic |
| ATTTGGAAGGCGTCTACTGC+TGG | 0.453067 | 3_2:+70931737 | None:intergenic |
| TCATTTACTGTAACGATTGA+GGG | 0.455769 | 3_2:+70934577 | None:intergenic |
| AACATAAATTCAGGAAATCA+AGG | 0.473671 | 3_2:-70931633 | Msa0421890:CDS |
| TTCAATCACTCCAGCACTCC+GGG | 0.473685 | 3_2:-70934701 | Msa0421890:CDS |
| ATCCATGCTCATGAGGAGAT+TGG | 0.476554 | 3_2:+70933325 | None:intergenic |
| CCAGTTGTTGGATACCCATT+GGG | 0.477027 | 3_2:+70931664 | None:intergenic |
| AAGTGAAAGGGTACCCGTCC+AGG | 0.477643 | 3_2:+70935127 | None:intergenic |
| CTTCCTTCCATCCTTAATGA+AGG | 0.477715 | 3_2:+70931605 | None:intergenic |
| CCCAGTTGTTGGATACCCAT+TGG | 0.479704 | 3_2:+70931663 | None:intergenic |
| GTGGAGCTTCTCATTCCAAT+TGG | 0.480272 | 3_2:+70935497 | None:intergenic |
| AAGCAAAATCCAATACCAAA+TGG | 0.481519 | 3_2:-70935667 | Msa0421890:five_prime_UTR |
| TCCGCACAAATCATTCAAGC+TGG | 0.482056 | 3_2:+70934303 | None:intergenic |
| CATTTAAGCTTCTATTTGGA+AGG | 0.482390 | 3_2:+70931724 | None:intergenic |
| TAACATACTAAGGCAAGAAA+AGG | 0.486755 | 3_2:-70932017 | Msa0421890:CDS |
| ATTCTCCACACATGAACAAA+AGG | 0.488062 | 3_2:-70931689 | Msa0421890:CDS |
| AACTCTAGAGATTGTCCAGC+AGG | 0.488428 | 3_2:-70933688 | Msa0421890:intron |
| TGGAGGAATATAACATACTA+AGG | 0.491206 | 3_2:-70932027 | Msa0421890:CDS |
| AGCTAGTCTGCATCAGAAGT+TGG | 0.492163 | 3_2:-70935206 | Msa0421890:CDS |
| CCATGTTATCAATTTGCTGT+CGG | 0.492212 | 3_2:-70933745 | Msa0421890:CDS |
| GAGATCGTTCGCCAAGGGAC+AGG | 0.492757 | 3_2:+70935152 | None:intergenic |
| CCGTGATATTGAGTTTATGT+AGG | 0.502204 | 3_2:+70934254 | None:intergenic |
| TGCAGAAATTGCAGGAAACT+CGG | 0.505191 | 3_2:-70934608 | Msa0421890:CDS |
| AAAGACAAGGGTGGCAGAGG+TGG | 0.506369 | 3_2:+70935691 | None:intergenic |
| TCAGCAGAGGTATCAGATCC+AGG | 0.511058 | 3_2:-70933717 | Msa0421890:CDS |
| CGAGAGGGAAAAGGTTCTGC+TGG | 0.520433 | 3_2:-70935290 | Msa0421890:CDS |
| CCGACAGCAAATTGATAACA+TGG | 0.522933 | 3_2:+70933745 | None:intergenic |
| ACTCACCTACTCCTGTCCCT+TGG | 0.525401 | 3_2:-70935163 | Msa0421890:CDS |
| AGGCGTCTACTGCTGGTGCT+TGG | 0.527547 | 3_2:+70931744 | None:intergenic |
| AGACAAGTTCGAGAGGGAAA+AGG | 0.527902 | 3_2:-70935299 | Msa0421890:CDS |
| GGTATATCCTTCATTAAGGA+TGG | 0.530437 | 3_2:-70931612 | Msa0421890:CDS |
| GGAATCCTTTCCCAAGATTG+TGG | 0.535210 | 3_2:+70934351 | None:intergenic |
| CTAAGTTCAATCTCCACTGA+AGG | 0.536725 | 3_2:-70935548 | Msa0421890:five_prime_UTR |
| TCAGAAGTTGGCTGAAGCAG+AGG | 0.538192 | 3_2:-70935194 | Msa0421890:CDS |
| CCGCACAAATCATTCAAGCT+GGG | 0.539404 | 3_2:+70934304 | None:intergenic |
| TCTGGAATGAGCCCATTTGA+TGG | 0.540651 | 3_2:+70935522 | None:intergenic |
| ACTGAAGGGTACCATCAAAT+GGG | 0.548310 | 3_2:-70935533 | Msa0421890:exon |
| CACTCCGGGAAATGCGCTTG+AGG | 0.548570 | 3_2:-70934687 | Msa0421890:CDS |
| CAAAAGAAGAGGCTTCGAGC+AGG | 0.554081 | 3_2:-70933286 | Msa0421890:CDS |
| CGAACGATCTCTTCCTGGAC+GGG | 0.556832 | 3_2:-70935140 | Msa0421890:intron |
| ATTCAATCACTCCAGCACTC+CGG | 0.557459 | 3_2:-70934702 | Msa0421890:CDS |
| TTCCAATCTCCTCATGAGCA+TGG | 0.558030 | 3_2:-70933327 | Msa0421890:CDS |
| TTGTTCATTTCTGTCCGTGA+AGG | 0.559381 | 3_2:+70933481 | None:intergenic |
| CATTTGATGGTACCCTTCAG+TGG | 0.559511 | 3_2:+70935535 | None:intergenic |
| ATTCCTATTACAGGAACTGC+AGG | 0.560645 | 3_2:-70935453 | Msa0421890:intron |
| GGAGCTATTCCAAAAGAAGC+AGG | 0.561788 | 3_2:-70933545 | Msa0421890:CDS |
| TTAAAAGACAAGGGTGGCAG+AGG | 0.562239 | 3_2:+70935688 | None:intergenic |
| CTTGTCCACAATCTTGGGAA+AGG | 0.564387 | 3_2:-70934356 | Msa0421890:CDS |
| GTCTTGCATATGAAAAGTAA+AGG | 0.564831 | 3_2:+70931551 | None:intergenic |
| GAATGAAAGACTACAGCAAG+TGG | 0.564847 | 3_2:-70934404 | Msa0421890:CDS |
| AAAGATTGTCTATCACGGTA+AGG | 0.567215 | 3_2:+70933771 | None:intergenic |
| ATGAACAAAAGGCTCCCAAT+GGG | 0.571218 | 3_2:-70931678 | Msa0421890:CDS |
| CATGAACAAAAGGCTCCCAA+TGG | 0.571401 | 3_2:-70931679 | Msa0421890:CDS |
| ATCTGATACCTCTGCTGATG+AGG | 0.572829 | 3_2:+70933722 | None:intergenic |
| CATTCTACTGACCATTATAC+GGG | 0.573420 | 3_2:+70933036 | None:intergenic |
| ATTATCAGAATGAGTTGCAA+AGG | 0.573617 | 3_2:-70934525 | Msa0421890:CDS |
| AAATGATGTGAAAGAAGTGT+TGG | 0.574676 | 3_2:+70935621 | None:intergenic |
| GGAGGATAAGAAAAGACAGC+AGG | 0.576273 | 3_2:-70931993 | Msa0421890:intron |
| GCAGTCATGGGAAAAGAAGA+AGG | 0.577231 | 3_2:-70931814 | Msa0421890:intron |
| CACACGTGGAGATTCCTTCA+CGG | 0.578207 | 3_2:-70933495 | Msa0421890:CDS |
| GTTCGCCAAGGGACAGGAGT+AGG | 0.579437 | 3_2:+70935158 | None:intergenic |
| AGGATGGAAGGAAGATACAA+AGG | 0.580566 | 3_2:-70931596 | Msa0421890:CDS |
| CATACTAAGGCAAGAAAAGG+AGG | 0.580847 | 3_2:-70932014 | Msa0421890:CDS |
| TATCCTTCATTAAGGATGGA+AGG | 0.581539 | 3_2:-70931608 | Msa0421890:CDS |
| ATAATGGTCAGTAGAATGCC+AGG | 0.582209 | 3_2:-70933031 | Msa0421890:intron |
| GCGAACGATCTCTTCCTGGA+CGG | 0.585459 | 3_2:-70935141 | Msa0421890:CDS |
| AAAACAAAATCGGCTGGACA+AGG | 0.586347 | 3_2:-70934212 | Msa0421890:intron |
| TGCATATGAAAAGTAAAGGT+AGG | 0.587797 | 3_2:+70931555 | None:intergenic |
| AAGACAAGGGTGGCAGAGGT+GGG | 0.593428 | 3_2:+70935692 | None:intergenic |
| TCCTCTAATGGAAATACTGG+AGG | 0.594082 | 3_2:-70932044 | Msa0421890:CDS |
| CAGGAAGAGATCGTTCGCCA+AGG | 0.594511 | 3_2:+70935146 | None:intergenic |
| GAAAGAAGTGTTGGTGTCAG+TGG | 0.596764 | 3_2:+70935630 | None:intergenic |
| GATATCAAGAGCAAAAGAAG+AGG | 0.598084 | 3_2:-70933297 | Msa0421890:CDS |
| AGAAAATGGTCCAGAATGTG+TGG | 0.598316 | 3_2:+70931509 | None:intergenic |
| TAGCACGCGATGAGGAGCGC+TGG | 0.599164 | 3_2:-70933229 | Msa0421890:CDS |
| TAAGTTCAATCTCCACTGAA+GGG | 0.607846 | 3_2:-70935547 | Msa0421890:five_prime_UTR |
| ATTGAACTTAGATAATGCTA+AGG | 0.612112 | 3_2:+70935560 | None:intergenic |
| AGAAGAGGCTTCGAGCAGGA+AGG | 0.616810 | 3_2:-70933282 | Msa0421890:CDS |
| AGGAAGAGATCGTTCGCCAA+GGG | 0.618807 | 3_2:+70935147 | None:intergenic |
| GCAAAGGCTGTACAATGAGA+AGG | 0.620234 | 3_2:-70934509 | Msa0421890:intron |
| CGACAGCAAATTGATAACAT+GGG | 0.621693 | 3_2:+70933746 | None:intergenic |
| AGAAGTGTTGGTGTCAGTGG+AGG | 0.621803 | 3_2:+70935633 | None:intergenic |
| CCAATGGGTATCCAACAACT+GGG | 0.627456 | 3_2:-70931663 | Msa0421890:CDS |
| CGCACAAATCATTCAAGCTG+GGG | 0.628853 | 3_2:+70934305 | None:intergenic |
| ACTAAGGCAAGAAAAGGAGG+AGG | 0.629609 | 3_2:-70932011 | Msa0421890:CDS |
| ACAAATCATTCAAGCTGGGG+TGG | 0.629680 | 3_2:+70934308 | None:intergenic |
| TGCTCATGAGGAGATTGGAA+TGG | 0.629793 | 3_2:+70933330 | None:intergenic |
| CTGTAATAGGAATCCGCACG+AGG | 0.629927 | 3_2:+70935463 | None:intergenic |
| AATCGATACTCAGTCAGTAG+AGG | 0.634619 | 3_2:-70933091 | Msa0421890:CDS |
| TGGAGAAGACAAGTTCGAGA+GGG | 0.635498 | 3_2:-70935305 | Msa0421890:CDS |
| GCACGAGGTTTCTAGCAATG+TGG | 0.647778 | 3_2:+70935478 | None:intergenic |
| CCTACATAAACTCAATATCA+CGG | 0.648283 | 3_2:-70934254 | Msa0421890:CDS |
| CCCAGCTTGAATGATTTGTG+CGG | 0.650581 | 3_2:-70934304 | Msa0421890:CDS |
| ATAATTAGCCTCATAAACGC+AGG | 0.650670 | 3_2:-70933457 | Msa0421890:intron |
| GAGTTGAAGGATGATTGAAG+AGG | 0.652754 | 3_2:+70934330 | None:intergenic |
| TTGGAGAAGACAAGTTCGAG+AGG | 0.661670 | 3_2:-70935306 | Msa0421890:CDS |
| TCTGTTCATCCATGCTCATG+AGG | 0.663751 | 3_2:+70933318 | None:intergenic |
| GCTGTCGGCCTCATCAGCAG+AGG | 0.684776 | 3_2:-70933730 | Msa0421890:CDS |
| GCTATTCCAAAAGAAGCAGG+AGG | 0.686349 | 3_2:-70933542 | Msa0421890:CDS |
| GTGGATGTTAGCACGCGATG+AGG | 0.690361 | 3_2:-70933237 | Msa0421890:CDS |
| CTGGCTAGAAGAATACAGCA+TGG | 0.700880 | 3_2:-70933210 | Msa0421890:intron |
| TATGGAGCAAGAGTGCCTTG+AGG | 0.711477 | 3_2:-70935266 | Msa0421890:CDS |
| ACATTGCTAGAAACCTCGTG+CGG | 0.751338 | 3_2:-70935476 | Msa0421890:CDS |
| GATATGCAAGAAATCACACG+TGG | 0.775049 | 3_2:-70933509 | Msa0421890:CDS |
| ACATAAACTCAATATCACGG+TGG | 0.787284 | 3_2:-70934251 | Msa0421890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTATTAGTACTTTTATT+TGG | - | chr3_2:70932005-70932024 | Msa0421890:CDS | 10.0% |
| !!! | ATACATATTCATTTTTAAAA+TGG | + | chr3_2:70933595-70933614 | None:intergenic | 10.0% |
| !! | ATATATGTATAAATATATAG+GGG | + | chr3_2:70934296-70934315 | None:intergenic | 10.0% |
| !! | CAATATATGTATAAATATAT+AGG | + | chr3_2:70934298-70934317 | None:intergenic | 10.0% |
| !! | TTATACATATATTGTTATAA+AGG | - | chr3_2:70934304-70934323 | Msa0421890:CDS | 10.0% |
| !!! | TTAAATTTTTTTGTTATCTT+GGG | + | chr3_2:70934757-70934776 | None:intergenic | 10.0% |
| !! | TTTCTCAAATTTAGATAATT+TGG | - | chr3_2:70931667-70931686 | Msa0421890:CDS | 15.0% |
| !! | TTCTCAAATTTAGATAATTT+GGG | - | chr3_2:70931668-70931687 | Msa0421890:CDS | 15.0% |
| !! | TTTATGAAGAAAAACAAAAT+CGG | - | chr3_2:70932781-70932800 | Msa0421890:intron | 15.0% |
| !!! | ATATATGTAAGTCAATTTTT+AGG | + | chr3_2:70933638-70933657 | None:intergenic | 15.0% |
| !!! | AATTGACTTACATATATAAA+AGG | - | chr3_2:70933641-70933660 | Msa0421890:intron | 15.0% |
| !!! | ATTGACTTACATATATAAAA+GGG | - | chr3_2:70933642-70933661 | Msa0421890:intron | 15.0% |
| !!! | CTTAAATTTTTTTGTTATCT+TGG | + | chr3_2:70934758-70934777 | None:intergenic | 15.0% |
| !! | TGATGTAAAAATATTGAAAA+CGG | + | chr3_2:70934807-70934826 | None:intergenic | 15.0% |
| !!! | TTCAATATTTTTACATCAAA+TGG | - | chr3_2:70934809-70934828 | Msa0421890:intron | 15.0% |
| !!! | TGAAATTTTTAATGATGAAG+AGG | + | chr3_2:70931421-70931440 | None:intergenic | 20.0% |
| !!! | ATACTTTGAAAAATAAGACA+TGG | + | chr3_2:70932044-70932063 | None:intergenic | 20.0% |
| !!! | TTTTCATCAAAATAACATTC+TGG | - | chr3_2:70932976-70932995 | Msa0421890:intron | 20.0% |
| !! | TTGACTTACATATATAAAAG+GGG | - | chr3_2:70933643-70933662 | Msa0421890:intron | 20.0% |
| !! | AAGATCAAAACATTATACTT+TGG | - | chr3_2:70934005-70934024 | Msa0421890:intron | 20.0% |
| !! | CTAGAAAATATGTACTTAAA+AGG | - | chr3_2:70934205-70934224 | Msa0421890:intron | 20.0% |
| !! | AGTCTATATAATTCTTCAAA+GGG | - | chr3_2:70934240-70934259 | Msa0421890:CDS | 20.0% |
| !!! | TTATTGACTTAATAAAAGCA+TGG | + | chr3_2:70934910-70934929 | None:intergenic | 20.0% |
| !!! | CAGTTTTAAAATATCCTTAA+TGG | - | chr3_2:70935131-70935150 | Msa0421890:intron | 20.0% |
| !! | TAAGAATAAAGATACCATTA+AGG | + | chr3_2:70935148-70935167 | None:intergenic | 20.0% |
| !! | AAAGAAATTTAAGGAGAAAA+TGG | + | chr3_2:70935511-70935530 | None:intergenic | 20.0% |
| !! | ATTCTTGACAAAGAAATTTA+AGG | + | chr3_2:70935520-70935539 | None:intergenic | 20.0% |
| ! | ATTGAACTTAGATAATGCTA+AGG | + | chr3_2:70931446-70931465 | None:intergenic | 25.0% |
| ! | AACATGAGTAGATTATCTTA+TGG | + | chr3_2:70931637-70931656 | None:intergenic | 25.0% |
| !! | TAGATAATTTGGGATGAAAT+TGG | - | chr3_2:70931678-70931697 | Msa0421890:CDS | 25.0% |
| ! | GAAAAACATCAATTTCTGTT+AGG | + | chr3_2:70932522-70932541 | None:intergenic | 25.0% |
| ! | GTAACAAAAAATATAAGCGA+CGG | - | chr3_2:70932723-70932742 | Msa0421890:intron | 25.0% |
| ! | TATAAATTTCACTACACGAA+AGG | - | chr3_2:70933008-70933027 | Msa0421890:intron | 25.0% |
| !!! | ATCAAATCTTTGGAATCTTA+TGG | - | chr3_2:70933204-70933223 | Msa0421890:intron | 25.0% |
| ! | TTGATCTTATCATATATACC+TGG | + | chr3_2:70933993-70934012 | None:intergenic | 25.0% |
| ! | TAGTAAAAATGACTAGTAGT+TGG | - | chr3_2:70934097-70934116 | Msa0421890:intron | 25.0% |
| ! | AGTAAAAATGACTAGTAGTT+GGG | - | chr3_2:70934098-70934117 | Msa0421890:intron | 25.0% |
| !! | TAAAGTTTTCTTGTATGATC+AGG | - | chr3_2:70934134-70934153 | Msa0421890:intron | 25.0% |
| ! | CAGTCTATATAATTCTTCAA+AGG | - | chr3_2:70934239-70934258 | Msa0421890:CDS | 25.0% |
| !! | CATTAGTGTTTTGTATACTA+CGG | + | chr3_2:70934362-70934381 | None:intergenic | 25.0% |
| !! | GTTTTGTCTTCTTTTATATG+CGG | + | chr3_2:70934427-70934446 | None:intergenic | 25.0% |
| ! | TAAAAGAAGACAAAACTTGA+AGG | - | chr3_2:70934431-70934450 | Msa0421890:intron | 25.0% |
| !!! | TAACATTACTTGTTTTACAG+AGG | + | chr3_2:70934675-70934694 | None:intergenic | 25.0% |
| !! | TATTCCTTTAAAAACCATAC+GGG | + | chr3_2:70934707-70934726 | None:intergenic | 25.0% |
| !! | GTATTCCTTTAAAAACCATA+CGG | + | chr3_2:70934708-70934727 | None:intergenic | 25.0% |
| ! | AACATAAATTCAGGAAATCA+AGG | - | chr3_2:70935370-70935389 | Msa0421890:intron | 25.0% |
| ! | CAAAAAACAAAACTAGAGTT+TGG | + | chr3_2:70935611-70935630 | None:intergenic | 25.0% |
| GTAATGTAAGTGTAAGCTTT+GGG | + | chr3_2:70931292-70931311 | None:intergenic | 30.0% | |
| ! | GGATTTTGCTTAAAAGACAA+GGG | + | chr3_2:70931327-70931346 | None:intergenic | 30.0% |
| ! | TGGATTTTGCTTAAAAGACA+AGG | + | chr3_2:70931328-70931347 | None:intergenic | 30.0% |
| AAGCAAAATCCAATACCAAA+TGG | - | chr3_2:70931336-70931355 | Msa0421890:three_prime_UTR | 30.0% | |
| !! | GTATTTTTGCCATTTGGTAT+TGG | + | chr3_2:70931348-70931367 | None:intergenic | 30.0% |
| ! | AAATGATGTGAAAGAAGTGT+TGG | + | chr3_2:70931385-70931404 | None:intergenic | 30.0% |
| !! | CTATTGCTTGTTATTATTCC+TGG | + | chr3_2:70931941-70931960 | None:intergenic | 30.0% |
| AGTATAAAACAGATAAGTCG+AGG | - | chr3_2:70932109-70932128 | Msa0421890:intron | 30.0% | |
| TCATTTACTGTAACGATTGA+GGG | + | chr3_2:70932429-70932448 | None:intergenic | 30.0% | |
| ATTATCAGAATGAGTTGCAA+AGG | - | chr3_2:70932478-70932497 | Msa0421890:intron | 30.0% | |
| CCTACATAAACTCAATATCA+CGG | - | chr3_2:70932749-70932768 | Msa0421890:intron | 30.0% | |
| ACTAGATTACTCCTTATGAA+GGG | + | chr3_2:70932896-70932915 | None:intergenic | 30.0% | |
| TACTAGATTACTCCTTATGA+AGG | + | chr3_2:70932897-70932916 | None:intergenic | 30.0% | |
| !!! | CAGATGTTTTTAAGTTCCTT+TGG | + | chr3_2:70932921-70932940 | None:intergenic | 30.0% |
| TGTATCACTGTCATAAGAAT+TGG | + | chr3_2:70932950-70932969 | None:intergenic | 30.0% | |
| !!! | TTGATAGTGTTTTGCCTAAA+TGG | + | chr3_2:70933189-70933208 | None:intergenic | 30.0% |
| GCAAAACACTATCAAATCTT+TGG | - | chr3_2:70933194-70933213 | Msa0421890:intron | 30.0% | |
| ! | TTCAGTCTTGTAAAAAGTTG+AGG | + | chr3_2:70933394-70933413 | None:intergenic | 30.0% |
| !! | ATGTAAGTCAATTTTTAGGC+TGG | + | chr3_2:70933634-70933653 | None:intergenic | 30.0% |
| TAATGGAAAAAGTTGAGAAG+TGG | - | chr3_2:70933747-70933766 | Msa0421890:CDS | 30.0% | |
| CGTAGTATACAAAACACTAA+TGG | - | chr3_2:70934360-70934379 | Msa0421890:CDS | 30.0% | |
| ! | ACTAATGGACCAAAAATTCA+CGG | - | chr3_2:70934375-70934394 | Msa0421890:CDS | 30.0% |
| ATGCAAAATGTTTCTTACAG+TGG | + | chr3_2:70934592-70934611 | None:intergenic | 30.0% | |
| GTATCATAAGATATGCTTCT+GGG | + | chr3_2:70934785-70934804 | None:intergenic | 30.0% | |
| ! | ATGATCTGATGTGTATTTTC+TGG | - | chr3_2:70934863-70934882 | Msa0421890:intron | 30.0% |
| !! | AACCTACATAGATGTCATTT+TGG | + | chr3_2:70934940-70934959 | None:intergenic | 30.0% |
| TGGAGGAATATAACATACTA+AGG | - | chr3_2:70934976-70934995 | Msa0421890:intron | 30.0% | |
| TAACATACTAAGGCAAGAAA+AGG | - | chr3_2:70934986-70935005 | Msa0421890:intron | 30.0% | |
| TCTTACTTCCTCTTTATGTT+TGG | - | chr3_2:70935163-70935182 | Msa0421890:CDS | 30.0% | |
| CATTTAAGCTTCTATTTGGA+AGG | + | chr3_2:70935282-70935301 | None:intergenic | 30.0% | |
| CTTCCAAATAGAAGCTTAAA+TGG | - | chr3_2:70935280-70935299 | Msa0421890:CDS | 30.0% | |
| CTTCCATTTAAGCTTCTATT+TGG | + | chr3_2:70935286-70935305 | None:intergenic | 30.0% | |
| GGATCAAACAACATAAATTC+AGG | - | chr3_2:70935361-70935380 | Msa0421890:intron | 30.0% | |
| TCAAGGTATATCCTTCATTA+AGG | - | chr3_2:70935387-70935406 | Msa0421890:intron | 30.0% | |
| TGCATATGAAAAGTAAAGGT+AGG | + | chr3_2:70935451-70935470 | None:intergenic | 30.0% | |
| GTCTTGCATATGAAAAGTAA+AGG | + | chr3_2:70935455-70935474 | None:intergenic | 30.0% | |
| TTTGTATGTTCACAACAGTA+TGG | + | chr3_2:70935579-70935598 | None:intergenic | 30.0% | |
| GAGCATGAGTTAATCAATTT+GGG | + | chr3_2:70935645-70935664 | None:intergenic | 30.0% | |
| GGTAATGTAAGTGTAAGCTT+TGG | + | chr3_2:70931293-70931312 | None:intergenic | 35.0% | |
| ! | TTTTGCTTAAAAGACAAGGG+TGG | + | chr3_2:70931324-70931343 | None:intergenic | 35.0% |
| !! | GAGGTAGTATTTTTGCCATT+TGG | + | chr3_2:70931354-70931373 | None:intergenic | 35.0% |
| TAAGTTCAATCTCCACTGAA+GGG | - | chr3_2:70931456-70931475 | Msa0421890:three_prime_UTR | 35.0% | |
| !!! | CTTTTTTCCTGTAAACCTCA+AGG | + | chr3_2:70931755-70931774 | None:intergenic | 35.0% |
| TATCGAGTACTAACTGGATA+TGG | + | chr3_2:70931904-70931923 | None:intergenic | 35.0% | |
| GTTTACTATCGAGTACTAAC+TGG | + | chr3_2:70931910-70931929 | None:intergenic | 35.0% | |
| TAATGTGTTAGCTGTGAGAA+AGG | - | chr3_2:70932085-70932104 | Msa0421890:intron | 35.0% | |
| TAACTGTACAGCCAGAAAAA+AGG | - | chr3_2:70932253-70932272 | Msa0421890:intron | 35.0% | |
| AGAATTTCTGCAGAAATTGC+AGG | - | chr3_2:70932387-70932406 | Msa0421890:intron | 35.0% | |
| CTCATTTACTGTAACGATTG+AGG | + | chr3_2:70932430-70932449 | None:intergenic | 35.0% | |
| TCTGTCACTAAAAAAACTCG+AGG | - | chr3_2:70932455-70932474 | Msa0421890:intron | 35.0% | |
| GAAGAATACTAACCCCTTAA+TGG | + | chr3_2:70932551-70932570 | None:intergenic | 35.0% | |
| CCGTGATATTGAGTTTATGT+AGG | + | chr3_2:70932752-70932771 | None:intergenic | 35.0% | |
| ACATAAACTCAATATCACGG+TGG | - | chr3_2:70932752-70932771 | Msa0421890:intron | 35.0% | |
| TGAAGAAAAACAAAATCGGC+TGG | - | chr3_2:70932785-70932804 | Msa0421890:intron | 35.0% | |
| CTAGATTACTCCTTATGAAG+GGG | + | chr3_2:70932895-70932914 | None:intergenic | 35.0% | |
| ATCACTGTCATAAGAATTGG+AGG | + | chr3_2:70932947-70932966 | None:intergenic | 35.0% | |
| TGCTTATTTAGTCTCGTGAT+AGG | + | chr3_2:70933074-70933093 | None:intergenic | 35.0% | |
| TATCACGAGACTAAATAAGC+AGG | - | chr3_2:70933073-70933092 | Msa0421890:CDS | 35.0% | |
| ATCACGAGACTAAATAAGCA+GGG | - | chr3_2:70933074-70933093 | Msa0421890:CDS | 35.0% | |
| ACACAGTACTTGAAGCTTAA+AGG | + | chr3_2:70933100-70933119 | None:intergenic | 35.0% | |
| AAAGATTGTCTATCACGGTA+AGG | + | chr3_2:70933235-70933254 | None:intergenic | 35.0% | |
| GGGAAAAAGATTGTCTATCA+CGG | + | chr3_2:70933240-70933259 | None:intergenic | 35.0% | |
| ! | CGACAGCAAATTGATAACAT+GGG | + | chr3_2:70933260-70933279 | None:intergenic | 35.0% |
| !! | CCATGTTATCAATTTGCTGT+CGG | - | chr3_2:70933258-70933277 | Msa0421890:CDS | 35.0% |
| ! | ATAATTAGCCTCATAAACGC+AGG | - | chr3_2:70933546-70933565 | Msa0421890:CDS | 35.0% |
| TAAATTCACCTGCGTTTATG+AGG | + | chr3_2:70933557-70933576 | None:intergenic | 35.0% | |
| GATATCAAGAGCAAAAGAAG+AGG | - | chr3_2:70933706-70933725 | Msa0421890:CDS | 35.0% | |
| CATTCTACTGACCATTATAC+GGG | + | chr3_2:70933970-70933989 | None:intergenic | 35.0% | |
| GCATTCTACTGACCATTATA+CGG | + | chr3_2:70933971-70933990 | None:intergenic | 35.0% | |
| ACATTATACTTTGGACCAAC+TGG | - | chr3_2:70934014-70934033 | Msa0421890:intron | 35.0% | |
| CTGTTCAATGTTGAATGAGA+AGG | + | chr3_2:70934491-70934510 | None:intergenic | 35.0% | |
| !! | CTTGACAATTTGCTACACAA+TGG | - | chr3_2:70934535-70934554 | Msa0421890:CDS | 35.0% |
| TTCTTACAGTGGCTTACAAT+AGG | + | chr3_2:70934581-70934600 | None:intergenic | 35.0% | |
| TGTTATAAACTACTCCCGTA+TGG | - | chr3_2:70934690-70934709 | Msa0421890:CDS | 35.0% | |
| ! | TACTCCCGTATGGTTTTTAA+AGG | - | chr3_2:70934700-70934719 | Msa0421890:CDS | 35.0% |
| GGTATCATAAGATATGCTTC+TGG | + | chr3_2:70934786-70934805 | None:intergenic | 35.0% | |
| AGCATGGCATCTACTATAAA+AGG | + | chr3_2:70934894-70934913 | None:intergenic | 35.0% | |
| AGCCAAAATGACATCTATGT+AGG | - | chr3_2:70934935-70934954 | Msa0421890:intron | 35.0% | |
| ATCTATGTAGGTTCCTCTAA+TGG | - | chr3_2:70934947-70934966 | Msa0421890:intron | 35.0% | |
| ACTGCAAACCAAACATAAAG+AGG | + | chr3_2:70935174-70935193 | None:intergenic | 35.0% | |
| !! | TTATGTTTGGTTTGCAGTCA+TGG | - | chr3_2:70935176-70935195 | Msa0421890:CDS | 35.0% |
| !! | TATGTTTGGTTTGCAGTCAT+GGG | - | chr3_2:70935177-70935196 | Msa0421890:CDS | 35.0% |
| TATCTCGCTCAAAAACTACT+TGG | + | chr3_2:70935222-70935241 | None:intergenic | 35.0% | |
| ATTCTCCACACATGAACAAA+AGG | - | chr3_2:70935314-70935333 | Msa0421890:CDS | 35.0% | |
| GGTATATCCTTCATTAAGGA+TGG | - | chr3_2:70935391-70935410 | Msa0421890:intron | 35.0% | |
| TATCCTTCATTAAGGATGGA+AGG | - | chr3_2:70935395-70935414 | Msa0421890:intron | 35.0% | |
| ! | TACTTTTCATATGCAAGACG+AGG | - | chr3_2:70935456-70935475 | Msa0421890:CDS | 35.0% |
| CGAGCATGAGTTAATCAATT+TGG | + | chr3_2:70935646-70935665 | None:intergenic | 35.0% | |
| !! | GTTTCTCTTTTAGTTGATGC+TGG | + | chr3_2:70935721-70935740 | None:intergenic | 35.0% |
| CTAAGTTCAATCTCCACTGA+AGG | - | chr3_2:70931455-70931474 | Msa0421890:three_prime_UTR | 40.0% | |
| !! | ACTGAAGGGTACCATCAAAT+GGG | - | chr3_2:70931470-70931489 | Msa0421890:three_prime_UTR | 40.0% |
| ! | TTCTCATTCCAATTGGTGTC+TGG | + | chr3_2:70931502-70931521 | None:intergenic | 40.0% |
| ATTCCTATTACAGGAACTGC+AGG | - | chr3_2:70931550-70931569 | Msa0421890:CDS | 40.0% | |
| CTGGATATGGCTAAGTGAAA+GGG | + | chr3_2:70931891-70931910 | None:intergenic | 40.0% | |
| ACTGGATATGGCTAAGTGAA+AGG | + | chr3_2:70931892-70931911 | None:intergenic | 40.0% | |
| GATAGTAAACAATCAGCACC+AGG | - | chr3_2:70931920-70931939 | Msa0421890:intron | 40.0% | |
| TGTACAGCCAGAAAAAAGGA+CGG | - | chr3_2:70932257-70932276 | Msa0421890:intron | 40.0% | |
| TGCAGAAATTGCAGGAAACT+CGG | - | chr3_2:70932395-70932414 | Msa0421890:intron | 40.0% | |
| ! | TGTTTTTCACCGCACCATTA+AGG | - | chr3_2:70932534-70932553 | Msa0421890:intron | 40.0% |
| ! | GTTTTTCACCGCACCATTAA+GGG | - | chr3_2:70932535-70932554 | Msa0421890:intron | 40.0% |
| ! | TTTTTCACCGCACCATTAAG+GGG | - | chr3_2:70932536-70932555 | Msa0421890:intron | 40.0% |
| ATACTAACCCCTTAATGGTG+CGG | + | chr3_2:70932546-70932565 | None:intergenic | 40.0% | |
| GAATGAAAGACTACAGCAAG+TGG | - | chr3_2:70932599-70932618 | Msa0421890:intron | 40.0% | |
| GAGTTGAAGGATGATTGAAG+AGG | + | chr3_2:70932676-70932695 | None:intergenic | 40.0% | |
| AAAACAAAATCGGCTGGACA+AGG | - | chr3_2:70932791-70932810 | Msa0421890:intron | 40.0% | |
| CATACTTACTCCCCTTCATA+AGG | - | chr3_2:70932882-70932901 | Msa0421890:CDS | 40.0% | |
| AGGAGTAATCTAGTAGCCAA+AGG | - | chr3_2:70932902-70932921 | Msa0421890:CDS | 40.0% | |
| GATTTGCAGCTTCACCATTT+AGG | - | chr3_2:70933172-70933191 | Msa0421890:intron | 40.0% | |
| ! | CCGACAGCAAATTGATAACA+TGG | + | chr3_2:70933261-70933280 | None:intergenic | 40.0% |
| !! | ATCTCTAGAGTTAGACTTCC+TGG | + | chr3_2:70933307-70933326 | None:intergenic | 40.0% |
| TAAGTTAGATACGTACCTGC+TGG | + | chr3_2:70933333-70933352 | None:intergenic | 40.0% | |
| ACAAAAAGCGAGCAAGATGA+AGG | - | chr3_2:70933437-70933456 | Msa0421890:intron | 40.0% | |
| GATATGCAAGAAATCACACG+TGG | - | chr3_2:70933494-70933513 | Msa0421890:CDS | 40.0% | |
| TTGTTCATTTCTGTCCGTGA+AGG | + | chr3_2:70933525-70933544 | None:intergenic | 40.0% | |
| CATAATCCAAGTGTGCTATC+AGG | - | chr3_2:70933884-70933903 | Msa0421890:intron | 40.0% | |
| AATCGATACTCAGTCAGTAG+AGG | - | chr3_2:70933912-70933931 | Msa0421890:intron | 40.0% | |
| ATAATGGTCAGTAGAATGCC+AGG | - | chr3_2:70933972-70933991 | Msa0421890:intron | 40.0% | |
| ATGTGTCTGGTGACATTAGT+GGG | + | chr3_2:70934338-70934357 | None:intergenic | 40.0% | |
| GAAGACAAAACTTGAAGGTG+TGG | - | chr3_2:70934436-70934455 | Msa0421890:intron | 40.0% | |
| GGTTCCTCTAATGGAAATAC+TGG | - | chr3_2:70934956-70934975 | Msa0421890:intron | 40.0% | |
| TCCTCTAATGGAAATACTGG+AGG | - | chr3_2:70934959-70934978 | Msa0421890:intron | 40.0% | |
| TCCTCCAGTATTTCCATTAG+AGG | + | chr3_2:70934963-70934982 | None:intergenic | 40.0% | |
| CATACTAAGGCAAGAAAAGG+AGG | - | chr3_2:70934989-70935008 | Msa0421890:intron | 40.0% | |
| ATGAACAAAAGGCTCCCAAT+GGG | - | chr3_2:70935325-70935344 | Msa0421890:CDS | 40.0% | |
| ! | TGTTGTTTGATCCCAGTTGT+TGG | + | chr3_2:70935354-70935373 | None:intergenic | 40.0% |
| CTTCCTTCCATCCTTAATGA+AGG | + | chr3_2:70935401-70935420 | None:intergenic | 40.0% | |
| AGGATGGAAGGAAGATACAA+AGG | - | chr3_2:70935407-70935426 | Msa0421890:intron | 40.0% | |
| TCTATCATGTCCACACATTC+TGG | - | chr3_2:70935484-70935503 | Msa0421890:CDS | 40.0% | |
| AGAAAATGGTCCAGAATGTG+TGG | + | chr3_2:70935497-70935516 | None:intergenic | 40.0% | |
| TTAAAAGACAAGGGTGGCAG+AGG | + | chr3_2:70931318-70931337 | None:intergenic | 45.0% | |
| !! | GAAAGAAGTGTTGGTGTCAG+TGG | + | chr3_2:70931376-70931395 | None:intergenic | 45.0% |
| ! | CATTTGATGGTACCCTTCAG+TGG | + | chr3_2:70931471-70931490 | None:intergenic | 45.0% |
| !! | CACTGAAGGGTACCATCAAA+TGG | - | chr3_2:70931469-70931488 | Msa0421890:three_prime_UTR | 45.0% |
| ! | TCTGGAATGAGCCCATTTGA+TGG | + | chr3_2:70931484-70931503 | None:intergenic | 45.0% |
| GTGGAGCTTCTCATTCCAAT+TGG | + | chr3_2:70931509-70931528 | None:intergenic | 45.0% | |
| ACATTGCTAGAAACCTCGTG+CGG | - | chr3_2:70931527-70931546 | Msa0421890:CDS | 45.0% | |
| TTGCCTGCAGTTCCTGTAAT+AGG | + | chr3_2:70931556-70931575 | None:intergenic | 45.0% | |
| TTGGAGAAGACAAGTTCGAG+AGG | - | chr3_2:70931697-70931716 | Msa0421890:CDS | 45.0% | |
| TGGAGAAGACAAGTTCGAGA+GGG | - | chr3_2:70931698-70931717 | Msa0421890:CDS | 45.0% | |
| AGACAAGTTCGAGAGGGAAA+AGG | - | chr3_2:70931704-70931723 | Msa0421890:CDS | 45.0% | |
| GGAAAAGGTTCTGCTGGATA+TGG | - | chr3_2:70931719-70931738 | Msa0421890:CDS | 45.0% | |
| !! | AAGAGTGCCTTGAGGTTTAC+AGG | - | chr3_2:70931745-70931764 | Msa0421890:CDS | 45.0% |
| ! | AGCTAGTCTGCATCAGAAGT+TGG | - | chr3_2:70931797-70931816 | Msa0421890:CDS | 45.0% |
| GTACAGCCAGAAAAAAGGAC+GGG | - | chr3_2:70932258-70932277 | Msa0421890:intron | 45.0% | |
| ATTCAATCACTCCAGCACTC+CGG | - | chr3_2:70932301-70932320 | Msa0421890:intron | 45.0% | |
| !! | TCACTTGCACAGCTCTGAAT+TGG | + | chr3_2:70932359-70932378 | None:intergenic | 45.0% |
| GCAAAGGCTGTACAATGAGA+AGG | - | chr3_2:70932494-70932513 | Msa0421890:intron | 45.0% | |
| ACACAGCTTGTCCACAATCT+TGG | - | chr3_2:70932641-70932660 | Msa0421890:intron | 45.0% | |
| CACAGCTTGTCCACAATCTT+GGG | - | chr3_2:70932642-70932661 | Msa0421890:intron | 45.0% | |
| CTTGTCCACAATCTTGGGAA+AGG | - | chr3_2:70932647-70932666 | Msa0421890:intron | 45.0% | |
| GGAATCCTTTCCCAAGATTG+TGG | + | chr3_2:70932655-70932674 | None:intergenic | 45.0% | |
| ACAAATCATTCAAGCTGGGG+TGG | + | chr3_2:70932698-70932717 | None:intergenic | 45.0% | |
| CGCACAAATCATTCAAGCTG+GGG | + | chr3_2:70932701-70932720 | None:intergenic | 45.0% | |
| CCGCACAAATCATTCAAGCT+GGG | + | chr3_2:70932702-70932721 | None:intergenic | 45.0% | |
| ! | CCCAGCTTGAATGATTTGTG+CGG | - | chr3_2:70932699-70932718 | Msa0421890:intron | 45.0% |
| TCCGCACAAATCATTCAAGC+TGG | + | chr3_2:70932703-70932722 | None:intergenic | 45.0% | |
| ATCTGATACCTCTGCTGATG+AGG | + | chr3_2:70933284-70933303 | None:intergenic | 45.0% | |
| ! | AACTCTAGAGATTGTCCAGC+AGG | - | chr3_2:70933315-70933334 | Msa0421890:CDS | 45.0% |
| GGAGCTATTCCAAAAGAAGC+AGG | - | chr3_2:70933458-70933477 | Msa0421890:CDS | 45.0% | |
| GCTATTCCAAAAGAAGCAGG+AGG | - | chr3_2:70933461-70933480 | Msa0421890:CDS | 45.0% | |
| TGCTCATGAGGAGATTGGAA+TGG | + | chr3_2:70933676-70933695 | None:intergenic | 45.0% | |
| TTCCAATCTCCTCATGAGCA+TGG | - | chr3_2:70933676-70933695 | Msa0421890:intron | 45.0% | |
| ATCCATGCTCATGAGGAGAT+TGG | + | chr3_2:70933681-70933700 | None:intergenic | 45.0% | |
| TCTGTTCATCCATGCTCATG+AGG | + | chr3_2:70933688-70933707 | None:intergenic | 45.0% | |
| TTCGAGCAGGAAGGCTATAA+TGG | - | chr3_2:70933730-70933749 | Msa0421890:CDS | 45.0% | |
| CTGGCTAGAAGAATACAGCA+TGG | - | chr3_2:70933793-70933812 | Msa0421890:CDS | 45.0% | |
| TCTCATCCTGATAGCACACT+TGG | + | chr3_2:70933893-70933912 | None:intergenic | 45.0% | |
| !!! | CTGCTGCTATTTTTCAGCTC+TGG | - | chr3_2:70934065-70934084 | Msa0421890:intron | 45.0% |
| TGTGTCTGGTGACATTAGTG+GGG | + | chr3_2:70934337-70934356 | None:intergenic | 45.0% | |
| CATGTGTCTGGTGACATTAG+TGG | + | chr3_2:70934339-70934358 | None:intergenic | 45.0% | |
| TGTATACTACGGCATGTGTC+TGG | + | chr3_2:70934351-70934370 | None:intergenic | 45.0% | |
| !! | GAGCTTGCTCCGTGAATTTT+TGG | + | chr3_2:70934387-70934406 | None:intergenic | 45.0% |
| !! | TGTTATCTTGGGAAGTGCTG+AGG | + | chr3_2:70934746-70934765 | None:intergenic | 45.0% |
| ACTAAGGCAAGAAAAGGAGG+AGG | - | chr3_2:70934992-70935011 | Msa0421890:intron | 45.0% | |
| GGAGGATAAGAAAAGACAGC+AGG | - | chr3_2:70935010-70935029 | Msa0421890:intron | 45.0% | |
| GCAGTCATGGGAAAAGAAGA+AGG | - | chr3_2:70935189-70935208 | Msa0421890:CDS | 45.0% | |
| GCTCAAAAACTACTTGGCTC+TGG | + | chr3_2:70935216-70935235 | None:intergenic | 45.0% | |
| CATGAACAAAAGGCTCCCAA+TGG | - | chr3_2:70935324-70935343 | Msa0421890:CDS | 45.0% | |
| CCAGTTGTTGGATACCCATT+GGG | + | chr3_2:70935342-70935361 | None:intergenic | 45.0% | |
| CCAATGGGTATCCAACAACT+GGG | - | chr3_2:70935340-70935359 | Msa0421890:intron | 45.0% | |
| !! | AATATATGTATAAATATATA+GGG | + | chr3_2:70934297-70934316 | None:intergenic | 5.0% |
| !! | AGAAGTGTTGGTGTCAGTGG+AGG | + | chr3_2:70931373-70931392 | None:intergenic | 50.0% |
| GGCTCATTCCAGACACCAAT+TGG | - | chr3_2:70931491-70931510 | Msa0421890:exon | 50.0% | |
| !! | GCACGAGGTTTCTAGCAATG+TGG | + | chr3_2:70931528-70931547 | None:intergenic | 50.0% |
| CTGTAATAGGAATCCGCACG+AGG | + | chr3_2:70931543-70931562 | None:intergenic | 50.0% | |
| CTCGTGCGGATTCCTATTAC+AGG | - | chr3_2:70931541-70931560 | Msa0421890:CDS | 50.0% | |
| !! | TATGGAGCAAGAGTGCCTTG+AGG | - | chr3_2:70931737-70931756 | Msa0421890:CDS | 50.0% |
| TCAGAAGTTGGCTGAAGCAG+AGG | - | chr3_2:70931809-70931828 | Msa0421890:CDS | 50.0% | |
| AGGAAGAGATCGTTCGCCAA+GGG | + | chr3_2:70931859-70931878 | None:intergenic | 50.0% | |
| !!! | AGCGTACCCGTCCTTTTTTC+TGG | + | chr3_2:70932267-70932286 | None:intergenic | 50.0% |
| TTCAATCACTCCAGCACTCC+GGG | - | chr3_2:70932302-70932321 | Msa0421890:intron | 50.0% | |
| CTTTCCTCAAGCGCATTTCC+CGG | + | chr3_2:70932323-70932342 | None:intergenic | 50.0% | |
| !! | TCAGCAGAGGTATCAGATCC+AGG | - | chr3_2:70933286-70933305 | Msa0421890:CDS | 50.0% |
| ! | CCAGTTCCTCCTGCTTCTTT+TGG | + | chr3_2:70933470-70933489 | None:intergenic | 50.0% |
| CCAAAAGAAGCAGGAGGAAC+TGG | - | chr3_2:70933467-70933486 | Msa0421890:CDS | 50.0% | |
| CACACGTGGAGATTCCTTCA+CGG | - | chr3_2:70933508-70933527 | Msa0421890:CDS | 50.0% | |
| CAAAAGAAGAGGCTTCGAGC+AGG | - | chr3_2:70933717-70933736 | Msa0421890:CDS | 50.0% | |
| AGCTGAACGTGCCCGTATAA+TGG | - | chr3_2:70933956-70933975 | Msa0421890:intron | 50.0% | |
| CTGTGTGATTGCTCTCCAGT+TGG | + | chr3_2:70934032-70934051 | None:intergenic | 50.0% | |
| GTGTCTGGTGACATTAGTGG+GGG | + | chr3_2:70934336-70934355 | None:intergenic | 50.0% | |
| !! | ATTTGGAAGGCGTCTACTGC+TGG | + | chr3_2:70935269-70935288 | None:intergenic | 50.0% |
| ! | GGGAGCCTTTTGTTCATGTG+TGG | + | chr3_2:70935322-70935341 | None:intergenic | 50.0% |
| CCCAATGGGTATCCAACAAC+TGG | - | chr3_2:70935339-70935358 | Msa0421890:intron | 50.0% | |
| CCCAGTTGTTGGATACCCAT+TGG | + | chr3_2:70935343-70935362 | None:intergenic | 50.0% | |
| AAGACAAGGGTGGCAGAGGT+GGG | + | chr3_2:70931314-70931333 | None:intergenic | 55.0% | |
| AAAGACAAGGGTGGCAGAGG+TGG | + | chr3_2:70931315-70931334 | None:intergenic | 55.0% | |
| CGAGAGGGAAAAGGTTCTGC+TGG | - | chr3_2:70931713-70931732 | Msa0421890:CDS | 55.0% | |
| ACTCACCTACTCCTGTCCCT+TGG | - | chr3_2:70931840-70931859 | Msa0421890:intron | 55.0% | |
| CAGGAAGAGATCGTTCGCCA+AGG | + | chr3_2:70931860-70931879 | None:intergenic | 55.0% | |
| CTTGGCGAACGATCTCTTCC+TGG | - | chr3_2:70931858-70931877 | Msa0421890:intron | 55.0% | |
| GCGAACGATCTCTTCCTGGA+CGG | - | chr3_2:70931862-70931881 | Msa0421890:intron | 55.0% | |
| CGAACGATCTCTTCCTGGAC+GGG | - | chr3_2:70931863-70931882 | Msa0421890:intron | 55.0% | |
| !! | AAGTGAAAGGGTACCCGTCC+AGG | + | chr3_2:70931879-70931898 | None:intergenic | 55.0% |
| TCAAGCTGGGGTGGAGTTGA+AGG | + | chr3_2:70932689-70932708 | None:intergenic | 55.0% | |
| AGAAGAGGCTTCGAGCAGGA+AGG | - | chr3_2:70933721-70933740 | Msa0421890:CDS | 55.0% | |
| GTGGATGTTAGCACGCGATG+AGG | - | chr3_2:70933766-70933785 | Msa0421890:CDS | 55.0% | |
| TGGTGACATTAGTGGGGGCT+AGG | + | chr3_2:70934331-70934350 | None:intergenic | 55.0% | |
| GTTCGCCAAGGGACAGGAGT+AGG | + | chr3_2:70931848-70931867 | None:intergenic | 60.0% | |
| GAGATCGTTCGCCAAGGGAC+AGG | + | chr3_2:70931854-70931873 | None:intergenic | 60.0% | |
| AAGCGCATTTCCCGGAGTGC+TGG | + | chr3_2:70932315-70932334 | None:intergenic | 60.0% | |
| CACTCCGGGAAATGCGCTTG+AGG | - | chr3_2:70932316-70932335 | Msa0421890:intron | 60.0% | |
| AGGCGTCTACTGCTGGTGCT+TGG | + | chr3_2:70935262-70935281 | None:intergenic | 60.0% | |
| GCTGTCGGCCTCATCAGCAG+AGG | - | chr3_2:70933273-70933292 | Msa0421890:CDS | 65.0% | |
| ! | TAGCACGCGATGAGGAGCGC+TGG | - | chr3_2:70933774-70933793 | Msa0421890:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 70931267 | 70935758 | 70931267 | ID=Msa0421890;Name=Msa0421890 |
| chr3_2 | mRNA | 70931267 | 70935758 | 70931267 | ID=Msa0421890-mRNA-1;Parent=Msa0421890;Name=Msa0421890-mRNA-1;_AED=0.09;_eAED=0.09;_QI=221|1|1|1|1|1|11|236|595 |
| chr3_2 | exon | 70931267 | 70931832 | 70931267 | ID=Msa0421890-mRNA-1:exon:17164;Parent=Msa0421890-mRNA-1 |
| chr3_2 | exon | 70931994 | 70932068 | 70931994 | ID=Msa0421890-mRNA-1:exon:17163;Parent=Msa0421890-mRNA-1 |
| chr3_2 | exon | 70932870 | 70932943 | 70932870 | ID=Msa0421890-mRNA-1:exon:17162;Parent=Msa0421890-mRNA-1 |
| chr3_2 | exon | 70933032 | 70933119 | 70933032 | ID=Msa0421890-mRNA-1:exon:17161;Parent=Msa0421890-mRNA-1 |
| chr3_2 | exon | 70933211 | 70933362 | 70933211 | ID=Msa0421890-mRNA-1:exon:17160;Parent=Msa0421890-mRNA-1 |
| chr3_2 | exon | 70933458 | 70933617 | 70933458 | ID=Msa0421890-mRNA-1:exon:17159;Parent=Msa0421890-mRNA-1 |
| chr3_2 | exon | 70933689 | 70933844 | 70933689 | ID=Msa0421890-mRNA-1:exon:17158;Parent=Msa0421890-mRNA-1 |
| chr3_2 | exon | 70934213 | 70934425 | 70934213 | ID=Msa0421890-mRNA-1:exon:17157;Parent=Msa0421890-mRNA-1 |
| chr3_2 | exon | 70934510 | 70934761 | 70934510 | ID=Msa0421890-mRNA-1:exon:17156;Parent=Msa0421890-mRNA-1 |
| chr3_2 | exon | 70935141 | 70935344 | 70935141 | ID=Msa0421890-mRNA-1:exon:17155;Parent=Msa0421890-mRNA-1 |
| chr3_2 | exon | 70935454 | 70935758 | 70935454 | ID=Msa0421890-mRNA-1:exon:17154;Parent=Msa0421890-mRNA-1 |
| chr3_2 | five_prime_UTR | 70935538 | 70935758 | 70935538 | ID=Msa0421890-mRNA-1:five_prime_utr;Parent=Msa0421890-mRNA-1 |
| chr3_2 | CDS | 70935454 | 70935537 | 70935454 | ID=Msa0421890-mRNA-1:cds;Parent=Msa0421890-mRNA-1 |
| chr3_2 | CDS | 70935141 | 70935344 | 70935141 | ID=Msa0421890-mRNA-1:cds;Parent=Msa0421890-mRNA-1 |
| chr3_2 | CDS | 70934510 | 70934761 | 70934510 | ID=Msa0421890-mRNA-1:cds;Parent=Msa0421890-mRNA-1 |
| chr3_2 | CDS | 70934213 | 70934425 | 70934213 | ID=Msa0421890-mRNA-1:cds;Parent=Msa0421890-mRNA-1 |
| chr3_2 | CDS | 70933689 | 70933844 | 70933689 | ID=Msa0421890-mRNA-1:cds;Parent=Msa0421890-mRNA-1 |
| chr3_2 | CDS | 70933458 | 70933617 | 70933458 | ID=Msa0421890-mRNA-1:cds;Parent=Msa0421890-mRNA-1 |
| chr3_2 | CDS | 70933211 | 70933362 | 70933211 | ID=Msa0421890-mRNA-1:cds;Parent=Msa0421890-mRNA-1 |
| chr3_2 | CDS | 70933032 | 70933119 | 70933032 | ID=Msa0421890-mRNA-1:cds;Parent=Msa0421890-mRNA-1 |
| chr3_2 | CDS | 70932870 | 70932943 | 70932870 | ID=Msa0421890-mRNA-1:cds;Parent=Msa0421890-mRNA-1 |
| chr3_2 | CDS | 70931994 | 70932068 | 70931994 | ID=Msa0421890-mRNA-1:cds;Parent=Msa0421890-mRNA-1 |
| chr3_2 | CDS | 70931503 | 70931832 | 70931503 | ID=Msa0421890-mRNA-1:cds;Parent=Msa0421890-mRNA-1 |
| chr3_2 | three_prime_UTR | 70931267 | 70931502 | 70931267 | ID=Msa0421890-mRNA-1:three_prime_utr;Parent=Msa0421890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
