AlfalfaGEDB | Msa1123930

M. sativa cultivar zhongmu-4 / Msa1123930

KEGG: K20869
GO: GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0031090 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042285 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0098588 GO:0098791 GO:1901576
PFAM: PF03360.19

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1123930	XP_024625178.1	97.929	338	6	1	1	337	1	338	0.0	676

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1123930	sp\|Q9ZQC6\|IRX9_ARATH	59.767	343	123	4	1	328	1	343	1.08e-143	412

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1123930	Q599J6	97.929	338	6	1	1	337	1	338	0.0	676

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0040660	Msa1123930	0.852226	5.304451e-61	-8.615850e-47
Msa0081250	Msa1123930	0.828764	7.498880e-55	-8.615850e-47
Msa0173780	Msa1123930	0.818785	1.634983e-52	-8.615850e-47
Msa0184680	Msa1123930	0.864131	1.515559e-64	-8.615850e-47
Msa0193850	Msa1123930	0.818831	1.596350e-52	-8.615850e-47
Msa0199960	Msa1123930	0.840614	7.821051e-58	-8.615850e-47
Msa0242490	Msa1123930	0.851986	6.207959e-61	-8.615850e-47
Msa0243600	Msa1123930	0.867731	1.102762e-65	-8.615850e-47
Msa0274440	Msa1123930	0.828805	7.329791e-55	-8.615850e-47
Msa0280690	Msa1123930	0.851877	6.664250e-61	-8.615850e-47

Showing 1 to 10 of 48 entries

Previous1 2 3 4 5Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1123930	MtrunA17_Chr7g0263751	97.929	338	6	1	1	337	1	338	0.0	676
Msa1123930	MtrunA17_Chr3g0140951	48.035	229	110	3	103	324	187	413	1.44e-70	226
Msa1123930	MtrunA17_Chr3g0140001	35.817	349	195	9	3	328	70	412	9.70e-65	211
Msa1123930	MtrunA17_Chr5g0401811	25.362	276	164	8	100	336	147	419	9.22e-16	78.2

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1123930	AT2G37090.1	59.767	343	123	4	1	328	1	343	1.10e-144	412
Msa1123930	AT1G27600.2	40.625	320	166	7	14	324	62	366	5.91e-74	234
Msa1123930	AT1G27600.1	40.625	320	166	7	14	324	62	366	5.91e-74	234
Msa1123930	AT5G67230.1	25.000	272	160	8	95	324	143	412	3.27e-16	79.7

Showing 1 to 4 of 4 entries

Previous1Next

Find 61 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGTTCGACCCCATCTCTCA+GGG	0.598644	7_3:-74937539	None:intergenic
AATAATAAAGTATATAGTTT+AGG	0.313120	7_3:-74935918	None:intergenic
AATATTAAAGATTTACCTGT+TGG	0.438372	7_3:-74936136	None:intergenic
ACAAAAGCTAATATTTAGTT+TGG	0.322846	7_3:+74935829	Msa1123930:five_prime_UTR
ACTACTATACATCATATGTT+AGG	0.313282	7_3:+74939060	Msa1123930:three_prime_UTR
ACTCAATATCTCTAAGCTGT+TGG	0.489245	7_3:-74936669	None:intergenic
ACTCTTCTCAAGTCATTGGA+TGG	0.578421	7_3:+74937433	Msa1123930:CDS
ACTGCTCCAAAATCTTGCTA+TGG	0.580047	7_3:+74938989	Msa1123930:CDS
ACTTGAGAAGAGTCACAAAC+TGG	0.500366	7_3:-74937423	None:intergenic
AGAAGATGAGGCTAAGTTGA+AGG	0.485965	7_3:+74938954	Msa1123930:CDS

Showing 1 to 10 of 61 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGAAATGTTGAGGTTATGAT+TGG	-	chr7_3:74935860-74935879	None:intergenic	30.0%
ATATAGTTTAGGTGCATTTG+TGG	-	chr7_3:74935910-74935929	None:intergenic	30.0%
CATTGCTTTCTTCCATAAAT+GGG	-	chr7_3:74936068-74936087	None:intergenic	30.0%
AAAAAAATGTAGCTAGTAGG+TGG	+	chr7_3:74936824-74936843	Msa1123930:intron	30.0%
AGGCTAGTAAGAAAATCTTT+AGG	+	chr7_3:74936888-74936907	Msa1123930:intron	30.0%
TAATCATCATCACTAGTGTT+AGG	-	chr7_3:74936918-74936937	None:intergenic	30.0%
AGTGTGAAATAAAATCACCT+AGG	-	chr7_3:74937261-74937280	None:intergenic	30.0%
TATTCATTTGACAATTGAGC+AGG	+	chr7_3:74937337-74937356	Msa1123930:intron	30.0%
ATTCATTTGACAATTGAGCA+GGG	+	chr7_3:74937338-74937357	Msa1123930:intron	30.0%
TTCAATAATAAAACTCTGGG+AGG	+	chr7_3:74937921-74937940	Msa1123930:intron	30.0%

Showing 1 to 10 of 194 entries

Previous1 2 3 4 5…20Next

Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	74935795	74939324	74935795	ID=Msa1123930;Name=Msa1123930
chr7_3	mRNA	74935795	74939324	74935795	ID=Msa1123930-mRNA-1;Parent=Msa1123930;Name=Msa1123930-mRNA-1;_AED=0.00;_eAED=0.00;_QI=239\|1\|1\|1\|1\|1\|3\|271\|337
chr7_3	exon	74935795	74936689	74935795	ID=Msa1123930-mRNA-1:exon:20058;Parent=Msa1123930-mRNA-1
chr7_3	exon	74937359	74937584	74937359	ID=Msa1123930-mRNA-1:exon:20059;Parent=Msa1123930-mRNA-1
chr7_3	exon	74938922	74939324	74938922	ID=Msa1123930-mRNA-1:exon:20060;Parent=Msa1123930-mRNA-1
chr7_3	five_prime_UTR	74935795	74936033	74935795	ID=Msa1123930-mRNA-1:five_prime_utr;Parent=Msa1123930-mRNA-1
chr7_3	CDS	74936034	74936689	74936034	ID=Msa1123930-mRNA-1:cds;Parent=Msa1123930-mRNA-1
chr7_3	CDS	74937359	74937584	74937359	ID=Msa1123930-mRNA-1:cds;Parent=Msa1123930-mRNA-1
chr7_3	CDS	74938922	74939053	74938922	ID=Msa1123930-mRNA-1:cds;Parent=Msa1123930-mRNA-1
chr7_3	three_prime_UTR	74939054	74939324	74939054	ID=Msa1123930-mRNA-1:three_prime_utr;Parent=Msa1123930-mRNA-1

Gene Sequence

>Msa1123930

ATGGGTTCAGTAGAAAGGTCAAAGAAAAAAACCCATTTATGGAAGAAAGCAATGCTTCATTTTTCTTTATGTTTTGTGATGGGTTTTTTCACAGGTTTAGCTCCAACAGGTAAATCTTTAATATTTTCTAGCAAATTTGAAATTTCAGTCTCAAATATAACAGAAGTTGTAGCACCACAACCTTCTCAAATGTCAACAAAAAATGGTAACAAAAGTTGGACAGCTCCAGCACCTAGAATCCATAGCCAAAAAACAACAGCAGCAACAACAAAATTGCATGTAAAACCACTACCTCAATTGAAGCCTAAAAGACTTCTAATCATAGTAACACCAACAAGCACAAAACTACCTTATCAAAATGTTTTTTTGAGAAGATTGGCAAATACTATAAAGCTTGTTGATCAACCATTGCTTTGGATTGTTGTCGAAGCGAAAACCGAATCAACTGAATTGCCAGAGATATTGAGGAAAACTGGTATCATGTATAGGCATGTTGTTTTCAGTGAAGAGTTCATGGACTTGGAAGCTGAATTGAATCATCAAAGAAATTTAGCTCTTAGACACATTGAGCATCATAGACTAAGTGGGATTGTTCACTTTGCTGGCCTTTCTAATGTTTATGATCTTCAATTCTTCCAACAGCTTAGAGATATTGAGGTCTTTGGAACATGGCCAACGGCATTATTACTTGCAAATAGAAAAAGAGTGATAATTGAAGGACCAGTTTGTGACTCTTCTCAAGTCATTGGATGGCATTTAAGAAGTATGAACAATGAGACAATCACTTCTCCCATTCATATTTCAAGTTTTGCATTCAATAGCTCCATTCTCTGGGACCCTGAGAGATGGGGTCGAACTTCATCAGTTAAGGATACTTCTCAGAACTCAATCAAGTTTGTGAAGCAAGTAGTTCTAGAAGATGAGGCTAAGTTGAAGGGAATTCCACCGTACTGCTCCAAAATCTTGCTATGGCGTTTCAACTTTTTTTATGCACGCACCATTTCCAAGCACTAG

Protein sequence

>Msa1123930

MGSVERSKKKTHLWKKAMLHFSLCFVMGFFTGLAPTGKSLIFSSKFEISVSNITEVVAPQPSQMSTKNGNKSWTAPAPRIHSQKTTAATTKLHVKPLPQLKPKRLLIIVTPTSTKLPYQNVFLRRLANTIKLVDQPLLWIVVEAKTESTELPEILRKTGIMYRHVVFSEEFMDLEAELNHQRNLALRHIEHHRLSGIVHFAGLSNVYDLQFFQQLRDIEVFGTWPTALLLANRKRVIIEGPVCDSSQVIGWHLRSMNNETITSPIHISSFAFNSSILWDPERWGRTSSVKDTSQNSIKFVKQVVLEDEAKLKGIPPYCSKILLWRFNFFYARTISKH*