Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123930 | XP_024625178.1 | 97.929 | 338 | 6 | 1 | 1 | 337 | 1 | 338 | 0.0 | 676 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123930 | sp|Q9ZQC6|IRX9_ARATH | 59.767 | 343 | 123 | 4 | 1 | 328 | 1 | 343 | 1.08e-143 | 412 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123930 | Q599J6 | 97.929 | 338 | 6 | 1 | 1 | 337 | 1 | 338 | 0.0 | 676 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040660 | Msa1123930 | 0.852226 | 5.304451e-61 | -8.615850e-47 |
| Msa0081250 | Msa1123930 | 0.828764 | 7.498880e-55 | -8.615850e-47 |
| Msa0626450 | Msa1123930 | 0.801008 | 1.102818e-48 | -8.615850e-47 |
| Msa0629600 | Msa1123930 | 0.803584 | 3.251903e-49 | -8.615850e-47 |
| Msa0642950 | Msa1123930 | 0.848403 | 6.268788e-60 | -8.615850e-47 |
| Msa0667370 | Msa1123930 | 0.809511 | 1.825216e-50 | -8.615850e-47 |
| Msa0682500 | Msa1123930 | 0.816840 | 4.493396e-52 | -8.615850e-47 |
| Msa0688820 | Msa1123930 | 0.892289 | 1.821211e-74 | -8.615850e-47 |
| Msa0818710 | Msa1123930 | 0.808254 | 3.390149e-50 | -8.615850e-47 |
| Msa0173780 | Msa1123930 | 0.818785 | 1.634983e-52 | -8.615850e-47 |
| Msa0184680 | Msa1123930 | 0.864131 | 1.515559e-64 | -8.615850e-47 |
| Msa0193850 | Msa1123930 | 0.818831 | 1.596350e-52 | -8.615850e-47 |
| Msa0199960 | Msa1123930 | 0.840614 | 7.821051e-58 | -8.615850e-47 |
| Msa0373310 | Msa1123930 | 0.802044 | 6.761675e-49 | -8.615850e-47 |
| Msa0389500 | Msa1123930 | 0.813385 | 2.629224e-51 | -8.615850e-47 |
| Msa0392380 | Msa1123930 | 0.858852 | 6.198147e-63 | -8.615850e-47 |
| Msa0440320 | Msa1123930 | 0.861526 | 9.647074e-64 | -8.615850e-47 |
| Msa0467770 | Msa1123930 | 0.800311 | 1.529858e-48 | -8.615850e-47 |
| Msa0475290 | Msa1123930 | 0.813842 | 2.085465e-51 | -8.615850e-47 |
| Msa1037550 | Msa1123930 | 0.874535 | 6.262764e-68 | -8.615850e-47 |
| Msa1078930 | Msa1123930 | 0.986420 | 9.980665e-167 | -8.615850e-47 |
| Msa0242490 | Msa1123930 | 0.851986 | 6.207959e-61 | -8.615850e-47 |
| Msa0243600 | Msa1123930 | 0.867731 | 1.102762e-65 | -8.615850e-47 |
| Msa0274440 | Msa1123930 | 0.828805 | 7.329791e-55 | -8.615850e-47 |
| Msa0280690 | Msa1123930 | 0.851877 | 6.664250e-61 | -8.615850e-47 |
| Msa0282220 | Msa1123930 | 0.867043 | 1.830412e-65 | -8.615850e-47 |
| Msa0300210 | Msa1123930 | 0.804863 | 1.761377e-49 | -8.615850e-47 |
| Msa0314170 | Msa1123930 | 0.836285 | 1.023343e-56 | -8.615850e-47 |
| Msa0319940 | Msa1123930 | 0.842939 | 1.903295e-58 | -8.615850e-47 |
| Msa1123930 | Msa1130430 | 0.845333 | 4.335056e-59 | -8.615850e-47 |
| Msa1123930 | Msa1169230 | 0.959692 | 1.008174e-117 | -8.615850e-47 |
| Msa1123930 | Msa1222590 | 0.838056 | 3.606026e-57 | -8.615850e-47 |
| Msa1123930 | Msa1264570 | 0.840854 | 6.764095e-58 | -8.615850e-47 |
| Msa1123930 | Msa1340700 | 0.870458 | 1.437296e-66 | -8.615850e-47 |
| Msa1123930 | Msa1412710 | 0.829430 | 5.169501e-55 | -8.615850e-47 |
| Msa1123930 | Msa1415540 | 0.806585 | 7.660234e-50 | -8.615850e-47 |
| Msa1123930 | Msa1416420 | 0.804986 | 1.660205e-49 | -8.615850e-47 |
| Msa1123930 | Msa1426070 | 0.988939 | 5.006916e-176 | -8.615850e-47 |
| Msa1123930 | Msa1430750 | 0.832122 | 1.132044e-55 | -8.615850e-47 |
| Msa1123930 | Msa1436420 | 0.864434 | 1.219635e-64 | -8.615850e-47 |
| Msa1123930 | Msa1445050 | 0.819947 | 8.886038e-53 | -8.615850e-47 |
| Msa1123930 | Msa1446110 | 0.863960 | 1.713550e-64 | -8.615850e-47 |
| Msa0487500 | Msa1123930 | 0.867578 | 1.233927e-65 | -8.615850e-47 |
| Msa0514170 | Msa1123930 | 0.810314 | 1.225896e-50 | -8.615850e-47 |
| Msa0528570 | Msa1123930 | 0.810193 | 1.302053e-50 | -8.615850e-47 |
| Msa0547110 | Msa1123930 | 0.803739 | 3.019450e-49 | -8.615850e-47 |
| Msa0601820 | Msa1123930 | 0.879584 | 1.105604e-69 | -8.615850e-47 |
| Msa0968350 | Msa1123930 | 0.993242 | 2.116352e-198 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123930 | MtrunA17_Chr7g0263751 | 97.929 | 338 | 6 | 1 | 1 | 337 | 1 | 338 | 0.0 | 676 |
| Msa1123930 | MtrunA17_Chr3g0140951 | 48.035 | 229 | 110 | 3 | 103 | 324 | 187 | 413 | 1.44e-70 | 226 |
| Msa1123930 | MtrunA17_Chr3g0140001 | 35.817 | 349 | 195 | 9 | 3 | 328 | 70 | 412 | 9.70e-65 | 211 |
| Msa1123930 | MtrunA17_Chr5g0401811 | 25.362 | 276 | 164 | 8 | 100 | 336 | 147 | 419 | 9.22e-16 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123930 | AT2G37090.1 | 59.767 | 343 | 123 | 4 | 1 | 328 | 1 | 343 | 1.10e-144 | 412 |
| Msa1123930 | AT1G27600.2 | 40.625 | 320 | 166 | 7 | 14 | 324 | 62 | 366 | 5.91e-74 | 234 |
| Msa1123930 | AT1G27600.1 | 40.625 | 320 | 166 | 7 | 14 | 324 | 62 | 366 | 5.91e-74 | 234 |
| Msa1123930 | AT5G67230.1 | 25.000 | 272 | 160 | 8 | 95 | 324 | 143 | 412 | 3.27e-16 | 79.7 |
Find 61 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTGCTTTCTTCCATAAA+TGG | 0.140314 | 7_3:-74936066 | None:intergenic |
| GAAACGCCATAGCAAGATTT+TGG | 0.205672 | 7_3:-74938995 | None:intergenic |
| TGGCAGCACATATTTGTTAA+TGG | 0.245165 | 7_3:-74935887 | None:intergenic |
| CATTCAATAGCTCCATTCTC+TGG | 0.283106 | 7_3:+74937514 | Msa1123930:CDS |
| AGTGGGATTGTTCACTTTGC+TGG | 0.287605 | 7_3:+74936616 | Msa1123930:CDS |
| TGACAATTGAGCAGGGTCTT+TGG | 0.303432 | 7_3:+74937345 | Msa1123930:intron |
| AATAATAAAGTATATAGTTT+AGG | 0.313120 | 7_3:-74935918 | None:intergenic |
| ACTACTATACATCATATGTT+AGG | 0.313282 | 7_3:+74939060 | Msa1123930:three_prime_UTR |
| ACAAAAGCTAATATTTAGTT+TGG | 0.322846 | 7_3:+74935829 | Msa1123930:five_prime_UTR |
| CAGTGAAGAGTTCATGGACT+TGG | 0.355535 | 7_3:+74936534 | Msa1123930:CDS |
| TGTGACTCTTCTCAAGTCAT+TGG | 0.366016 | 7_3:+74937429 | Msa1123930:CDS |
| CTCTGGCAATTCAGTTGATT+CGG | 0.377196 | 7_3:-74936470 | None:intergenic |
| TTGGAGGTATTTCATATGTA+AGG | 0.398590 | 7_3:-74935806 | None:intergenic |
| CATTGCTTTCTTCCATAAAT+GGG | 0.399629 | 7_3:-74936065 | None:intergenic |
| CCAGAGATATTGAGGAAAAC+TGG | 0.401504 | 7_3:+74936487 | Msa1123930:CDS |
| GAATAAAATTGAGTAATTGT+TGG | 0.406917 | 7_3:-74935966 | None:intergenic |
| TGGCTATGGATTCTAGGTGC+TGG | 0.412979 | 7_3:-74936259 | None:intergenic |
| TTAGGCTTCAATTGAGGTAG+TGG | 0.414050 | 7_3:-74936319 | None:intergenic |
| TTCACAGGTTTAGCTCCAAC+AGG | 0.416327 | 7_3:+74936121 | Msa1123930:CDS |
| TTCTCTGGGACCCTGAGAGA+TGG | 0.425575 | 7_3:+74937529 | Msa1123930:CDS |
| GAAGTTCGACCCCATCTCTC+AGG | 0.437016 | 7_3:-74937540 | None:intergenic |
| TCTCTGGGACCCTGAGAGAT+GGG | 0.437280 | 7_3:+74937530 | Msa1123930:CDS |
| CTACTATACATCATATGTTA+GGG | 0.437935 | 7_3:+74939061 | Msa1123930:three_prime_UTR |
| GGGTCGAACTTCATCAGTTA+AGG | 0.438041 | 7_3:+74937551 | Msa1123930:CDS |
| AATATTAAAGATTTACCTGT+TGG | 0.438372 | 7_3:-74936136 | None:intergenic |
| ATCAGTTAAGGATACTTCTC+AGG | 0.448819 | 7_3:+74937563 | Msa1123930:CDS |
| GGAAAACTGGTATCATGTAT+AGG | 0.455162 | 7_3:+74936500 | Msa1123930:CDS |
| TGAAATGTTGAGGTTATGAT+TGG | 0.461969 | 7_3:-74935857 | None:intergenic |
| TTGTTGATCAACCATTGCTT+TGG | 0.462201 | 7_3:+74936428 | Msa1123930:CDS |
| TAGAAACTAGTGCTTGGAAA+TGG | 0.464267 | 7_3:-74939037 | None:intergenic |
| TCTCTCAGGGTCCCAGAGAA+TGG | 0.466645 | 7_3:-74937526 | None:intergenic |
| CTGAATTGCCAGAGATATTG+AGG | 0.474651 | 7_3:+74936479 | Msa1123930:CDS |
| AGAAGATGGGTTCAGTAGAA+AGG | 0.478029 | 7_3:+74936029 | Msa1123930:exon |
| TGCAAAACTTGAAATATGAA+TGG | 0.482368 | 7_3:-74937493 | None:intergenic |
| AGAAGATGAGGCTAAGTTGA+AGG | 0.485965 | 7_3:+74938954 | Msa1123930:CDS |
| GCAAAACTTGAAATATGAAT+GGG | 0.488014 | 7_3:-74937492 | None:intergenic |
| ATATAGTTTAGGTGCATTTG+TGG | 0.488627 | 7_3:-74935907 | None:intergenic |
| ACTCAATATCTCTAAGCTGT+TGG | 0.489245 | 7_3:-74936669 | None:intergenic |
| ACTTGAGAAGAGTCACAAAC+TGG | 0.500366 | 7_3:-74937423 | None:intergenic |
| TGGAAACGTTTGAAATGTTG+AGG | 0.501044 | 7_3:-74935867 | None:intergenic |
| TATGAAAGCAACTCTTGTAC+TGG | 0.507724 | 7_3:-74939128 | None:intergenic |
| GAAGATCATAAACATTAGAA+AGG | 0.518111 | 7_3:-74936639 | None:intergenic |
| GTTGACATTTGAGAAGGTTG+TGG | 0.518182 | 7_3:-74936208 | None:intergenic |
| TTGGAACAGAATGAAGAGAA+GGG | 0.523187 | 7_3:-74935947 | None:intergenic |
| ATTCAATAGCTCCATTCTCT+GGG | 0.531877 | 7_3:+74937515 | Msa1123930:CDS |
| GTTGGAACAGAATGAAGAGA+AGG | 0.540184 | 7_3:-74935948 | None:intergenic |
| ATTGAGCATCATAGACTAAG+TGG | 0.544865 | 7_3:+74936598 | Msa1123930:CDS |
| AGTAGTTAGAAACTAGTGCT+TGG | 0.546140 | 7_3:-74939043 | None:intergenic |
| TTTGCAAGTAATAATGCCGT+TGG | 0.557119 | 7_3:-74937375 | None:intergenic |
| TGAGCAGGGTCTTTGGAACA+TGG | 0.563420 | 7_3:+74937352 | Msa1123930:intron |
| GCAAGTAGTTCTAGAAGATG+AGG | 0.569238 | 7_3:+74938942 | Msa1123930:CDS |
| ACTCTTCTCAAGTCATTGGA+TGG | 0.578421 | 7_3:+74937433 | Msa1123930:CDS |
| ACTGCTCCAAAATCTTGCTA+TGG | 0.580047 | 7_3:+74938989 | Msa1123930:CDS |
| GAAGATGAGGCTAAGTTGAA+GGG | 0.584310 | 7_3:+74938955 | Msa1123930:CDS |
| AAGTTCGACCCCATCTCTCA+GGG | 0.598644 | 7_3:-74937539 | None:intergenic |
| CTCTGGGACCCTGAGAGATG+GGG | 0.602550 | 7_3:+74937531 | Msa1123930:CDS |
| TCGACAACAATCCAAAGCAA+TGG | 0.628366 | 7_3:-74936439 | None:intergenic |
| TTGAGCATCATAGACTAAGT+GGG | 0.628829 | 7_3:+74936599 | Msa1123930:CDS |
| GGTCTTTGGAACATGGCCAA+CGG | 0.646193 | 7_3:+74937359 | Msa1123930:CDS |
| TACTATACATCATATGTTAG+GGG | 0.651812 | 7_3:+74939062 | Msa1123930:three_prime_UTR |
| TATACGGAAGACAATTACAA+AGG | 0.665200 | 7_3:-74939183 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAAAGTATATAGTTT+AGG | - | chr7_3:74935921-74935940 | None:intergenic | 10.0% |
| !! | ACACTTAAAAAAAATTATAT+TGG | + | chr7_3:74937185-74937204 | Msa1123930:intron | 10.0% |
| !! | ATAAAAATAAAAATAAGTCA+AGG | - | chr7_3:74937701-74937720 | None:intergenic | 10.0% |
| !!! | CTTAATTTTTTTTTTTTTGA+AGG | + | chr7_3:74938322-74938341 | Msa1123930:intron | 10.0% |
| !! | AATAAAAATGTTAAATAGTT+TGG | + | chr7_3:74938375-74938394 | Msa1123930:intron | 10.0% |
| !!! | CAAATAGTTTTTTTTTTTAA+TGG | + | chr7_3:74938421-74938440 | Msa1123930:intron | 10.0% |
| !! | AACACAATAAAAAATATATA+CGG | - | chr7_3:74939202-74939221 | None:intergenic | 10.0% |
| !!! | TGATTATTTTTTTAACAAAA+AGG | + | chr7_3:74939286-74939305 | Msa1123930:three_prime_UTR | 10.0% |
| !! | AAAAATTTACCAAAAAATTC+AGG | - | chr7_3:74936000-74936019 | None:intergenic | 15.0% |
| !!! | AAAAAACAACTTTTTTCAAT+TGG | + | chr7_3:74936856-74936875 | Msa1123930:intron | 15.0% |
| !! | ATATCAAAAACCAAATTTAT+TGG | - | chr7_3:74936988-74937007 | None:intergenic | 15.0% |
| !!! | TTTAATCTTCACAATATTTT+CGG | - | chr7_3:74937741-74937760 | None:intergenic | 15.0% |
| !! | AAAAATTGTCAAGTTTATAA+CGG | + | chr7_3:74938198-74938217 | Msa1123930:intron | 15.0% |
| !!! | ACTAAATATTAGCTTTTGTT+TGG | - | chr7_3:74935828-74935847 | None:intergenic | 20.0% |
| !! | ACAAAAGCTAATATTTAGTT+TGG | + | chr7_3:74935829-74935848 | Msa1123930:five_prime_UTR | 20.0% |
| !! | GAATAAAATTGAGTAATTGT+TGG | - | chr7_3:74935969-74935988 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTATGTTTTGTGA+TGG | + | chr7_3:74936093-74936112 | Msa1123930:CDS | 20.0% |
| !!! | TTTTCTTTATGTTTTGTGAT+GGG | + | chr7_3:74936094-74936113 | Msa1123930:CDS | 20.0% |
| !! | AATATTAAAGATTTACCTGT+TGG | - | chr7_3:74936139-74936158 | None:intergenic | 20.0% |
| !!! | CTCAAAAAAACATTTTGATA+AGG | - | chr7_3:74936385-74936404 | None:intergenic | 20.0% |
| !!! | AAATGTTTTTTTGAGAAGAT+TGG | + | chr7_3:74936390-74936409 | Msa1123930:CDS | 20.0% |
| !!! | AATTAGTTTAGCAAATAGAA+GGG | - | chr7_3:74936707-74936726 | None:intergenic | 20.0% |
| !!! | AAATTAGTTTAGCAAATAGA+AGG | - | chr7_3:74936708-74936727 | None:intergenic | 20.0% |
| !!! | TGTTAATTTGTTATGTCTAA+TGG | + | chr7_3:74936758-74936777 | Msa1123930:intron | 20.0% |
| !! | TTAAAAAAAATGTAGCTAGT+AGG | + | chr7_3:74936821-74936840 | Msa1123930:intron | 20.0% |
| !! | AGTGTAGATATTTAACAATT+TGG | - | chr7_3:74937170-74937189 | None:intergenic | 20.0% |
| !! | AATGTTATAATTACACATCA+TGG | + | chr7_3:74937588-74937607 | Msa1123930:intron | 20.0% |
| !! | ACAGTTAAATATATGAGTAA+TGG | - | chr7_3:74938148-74938167 | None:intergenic | 20.0% |
| !! | AAAATTGTCAAGTTTATAAC+GGG | + | chr7_3:74938199-74938218 | Msa1123930:intron | 20.0% |
| !!! | AAGCAATTTATTTGAGTTTA+GGG | - | chr7_3:74938247-74938266 | None:intergenic | 20.0% |
| !! | TCAAATACACTTATAAAGTT+AGG | + | chr7_3:74938266-74938285 | Msa1123930:intron | 20.0% |
| !! | AAAATGTTAAATAGTTTGGT+TGG | + | chr7_3:74938379-74938398 | Msa1123930:intron | 20.0% |
| !!! | TTTTTCCTTTTTAAAGTAGT+TGG | - | chr7_3:74938558-74938577 | None:intergenic | 20.0% |
| !!! | AATTGAGATATATCTAAAGT+AGG | - | chr7_3:74938741-74938760 | None:intergenic | 20.0% |
| !!! | AAATATTAGCTTTTGTTTGG+AGG | - | chr7_3:74935825-74935844 | None:intergenic | 25.0% |
| ! | ATTTACCAAAAAATTCAGGT+TGG | - | chr7_3:74935996-74936015 | None:intergenic | 25.0% |
| !!! | TTTTTTGCTTCTTTAGAAGA+TGG | + | chr7_3:74936015-74936034 | Msa1123930:exon | 25.0% |
| !!! | TTTTTGCTTCTTTAGAAGAT+GGG | + | chr7_3:74936016-74936035 | Msa1123930:exon | 25.0% |
| ! | CAAAGAAAAAAACCCATTTA+TGG | + | chr7_3:74936053-74936072 | Msa1123930:CDS | 25.0% |
| !!! | TTTTTTGTTGACATTTGAGA+AGG | - | chr7_3:74936217-74936236 | None:intergenic | 25.0% |
| ! | TCTCAAATGTCAACAAAAAA+TGG | + | chr7_3:74936217-74936236 | Msa1123930:CDS | 25.0% |
| ! | CAAAAAATGGTAACAAAAGT+TGG | + | chr7_3:74936230-74936249 | Msa1123930:CDS | 25.0% |
| !! | ACTATGATTAGAAGTCTTTT+AGG | - | chr7_3:74936340-74936359 | None:intergenic | 25.0% |
| ! | GAAGATCATAAACATTAGAA+AGG | - | chr7_3:74936642-74936661 | None:intergenic | 25.0% |
| !! | ATTAGTTTAGCAAATAGAAG+GGG | - | chr7_3:74936706-74936725 | None:intergenic | 25.0% |
| ! | CTACTAGCTACATTAAAATT+AGG | - | chr7_3:74936797-74936816 | None:intergenic | 25.0% |
| !!! | CTAATTTTAATGTAGCTAGT+AGG | + | chr7_3:74936795-74936814 | Msa1123930:intron | 25.0% |
| !!! | AACAACTTTTTTCAATTGGA+TGG | + | chr7_3:74936860-74936879 | Msa1123930:intron | 25.0% |
| !! | TTTTCAATTGGATGGAAAAA+AGG | + | chr7_3:74936868-74936887 | Msa1123930:intron | 25.0% |
| ! | TTTAGTGACACCAATAAATT+TGG | + | chr7_3:74936975-74936994 | Msa1123930:intron | 25.0% |
| !! | AATCATTCTAAAAACATCTC+AGG | + | chr7_3:74937056-74937075 | Msa1123930:intron | 25.0% |
| !!! | ATCACTTTAGTCTTTTTGAA+TGG | - | chr7_3:74937092-74937111 | None:intergenic | 25.0% |
| !! | TTTTTCTTTTCAAATCACCT+AGG | - | chr7_3:74937285-74937304 | None:intergenic | 25.0% |
| ! | AGAAAAAGAGTGATAATTGA+AGG | + | chr7_3:74937399-74937418 | Msa1123930:CDS | 25.0% |
| ! | GCAAAACTTGAAATATGAAT+GGG | - | chr7_3:74937495-74937514 | None:intergenic | 25.0% |
| ! | TGCAAAACTTGAAATATGAA+TGG | - | chr7_3:74937496-74937515 | None:intergenic | 25.0% |
| ! | TATCAAAACCAAACTTCAAT+TGG | + | chr7_3:74937634-74937653 | Msa1123930:intron | 25.0% |
| ! | AACATATACCAATTGAAGTT+TGG | - | chr7_3:74937645-74937664 | None:intergenic | 25.0% |
| ! | ATTTGAAGAAAAGTTGTATG+CGG | + | chr7_3:74937761-74937780 | Msa1123930:intron | 25.0% |
| ! | TTGCTTCAATAATAAAACTC+TGG | + | chr7_3:74937917-74937936 | Msa1123930:intron | 25.0% |
| ! | TGCTTCAATAATAAAACTCT+GGG | + | chr7_3:74937918-74937937 | Msa1123930:intron | 25.0% |
| !!! | TTCGCTTTTTTCAAATTTTG+AGG | - | chr7_3:74937982-74938001 | None:intergenic | 25.0% |
| ! | GTAAATTCCTATTTGTCTAT+GGG | + | chr7_3:74938105-74938124 | Msa1123930:intron | 25.0% |
| ! | TATGAGTAATGGCTTAAATA+GGG | - | chr7_3:74938137-74938156 | None:intergenic | 25.0% |
| ! | ATATGAGTAATGGCTTAAAT+AGG | - | chr7_3:74938138-74938157 | None:intergenic | 25.0% |
| ! | AAATTGTCAAGTTTATAACG+GGG | + | chr7_3:74938200-74938219 | Msa1123930:intron | 25.0% |
| !! | GAAGCAATTTATTTGAGTTT+AGG | - | chr7_3:74938248-74938267 | None:intergenic | 25.0% |
| ! | ATACACTTATAAAGTTAGGT+TGG | + | chr7_3:74938270-74938289 | Msa1123930:intron | 25.0% |
| ! | TTTGGTTGGATATATCTATT+TGG | + | chr7_3:74938393-74938412 | Msa1123930:intron | 25.0% |
| ! | AATAAAATTTCAAGCAGTGA+AGG | - | chr7_3:74938505-74938524 | None:intergenic | 25.0% |
| ! | TACGCAAGAATAAAAAAACT+AGG | + | chr7_3:74938581-74938600 | Msa1123930:intron | 25.0% |
| ! | ACTACTATACATCATATGTT+AGG | + | chr7_3:74939060-74939079 | Msa1123930:three_prime_UTR | 25.0% |
| ! | CTACTATACATCATATGTTA+GGG | + | chr7_3:74939061-74939080 | Msa1123930:three_prime_UTR | 25.0% |
| ! | TACTATACATCATATGTTAG+GGG | + | chr7_3:74939062-74939081 | Msa1123930:three_prime_UTR | 25.0% |
| !!! | ATTTTGTTAGCTTACGTAAA+AGG | + | chr7_3:74939227-74939246 | Msa1123930:three_prime_UTR | 25.0% |
| !! | TTGGAGGTATTTCATATGTA+AGG | - | chr7_3:74935809-74935828 | None:intergenic | 30.0% |
| TGAAATGTTGAGGTTATGAT+TGG | - | chr7_3:74935860-74935879 | None:intergenic | 30.0% | |
| ATATAGTTTAGGTGCATTTG+TGG | - | chr7_3:74935910-74935929 | None:intergenic | 30.0% | |
| CATTGCTTTCTTCCATAAAT+GGG | - | chr7_3:74936068-74936087 | None:intergenic | 30.0% | |
| AAAAAAATGTAGCTAGTAGG+TGG | + | chr7_3:74936824-74936843 | Msa1123930:intron | 30.0% | |
| AGGCTAGTAAGAAAATCTTT+AGG | + | chr7_3:74936888-74936907 | Msa1123930:intron | 30.0% | |
| TAATCATCATCACTAGTGTT+AGG | - | chr7_3:74936918-74936937 | None:intergenic | 30.0% | |
| AGTGTGAAATAAAATCACCT+AGG | - | chr7_3:74937261-74937280 | None:intergenic | 30.0% | |
| !! | GATTTTATTTCACACTTCCT+AGG | + | chr7_3:74937265-74937284 | Msa1123930:intron | 30.0% |
| TATTCATTTGACAATTGAGC+AGG | + | chr7_3:74937337-74937356 | Msa1123930:intron | 30.0% | |
| ATTCATTTGACAATTGAGCA+GGG | + | chr7_3:74937338-74937357 | Msa1123930:intron | 30.0% | |
| TTCAATAATAAAACTCTGGG+AGG | + | chr7_3:74937921-74937940 | Msa1123930:intron | 30.0% | |
| CGAAAAAAAACTTGTACCTA+CGG | + | chr7_3:74937998-74938017 | Msa1123930:intron | 30.0% | |
| !! | AGATATTTAGTGACGGATTT+CGG | - | chr7_3:74938024-74938043 | None:intergenic | 30.0% |
| CGGAAATAGATATTTAGTGA+CGG | - | chr7_3:74938031-74938050 | None:intergenic | 30.0% | |
| CACTAAATATCTATTTCCGT+AGG | + | chr7_3:74938032-74938051 | Msa1123930:intron | 30.0% | |
| GTCAATTATGCATTATCCAT+AGG | + | chr7_3:74938083-74938102 | Msa1123930:intron | 30.0% | |
| GACAAATAGGAATTTACCTA+TGG | - | chr7_3:74938102-74938121 | None:intergenic | 30.0% | |
| GGTAAATTCCTATTTGTCTA+TGG | + | chr7_3:74938104-74938123 | Msa1123930:intron | 30.0% | |
| !!! | CTTTTTAAAGTAGTTGGATG+AGG | - | chr7_3:74938552-74938571 | None:intergenic | 30.0% |
| ! | CTCATCCAACTACTTTAAAA+AGG | + | chr7_3:74938550-74938569 | Msa1123930:intron | 30.0% |
| ! | ATGACATGTGATAATGCATT+TGG | + | chr7_3:74938692-74938711 | Msa1123930:intron | 30.0% |
| ! | ATCTAAAGTAGGTTCTATCT+TGG | - | chr7_3:74938730-74938749 | None:intergenic | 30.0% |
| AAAATAGCAACAAAGCTCTT+AGG | - | chr7_3:74938864-74938883 | None:intergenic | 30.0% | |
| !!! | TGCTATTTTGTCCTAATTTG+AGG | + | chr7_3:74938875-74938894 | Msa1123930:intron | 30.0% |
| AAAAGAAGTAGCCTCAAATT+AGG | - | chr7_3:74938889-74938908 | None:intergenic | 30.0% | |
| TATACGGAAGACAATTACAA+AGG | - | chr7_3:74939186-74939205 | None:intergenic | 30.0% | |
| ! | CTTCAAATGTTTTGCTTCAT+AGG | - | chr7_3:74939260-74939279 | None:intergenic | 30.0% |
| ! | TGGAAACGTTTGAAATGTTG+AGG | - | chr7_3:74935870-74935889 | None:intergenic | 35.0% |
| ! | TGGCAGCACATATTTGTTAA+TGG | - | chr7_3:74935890-74935909 | None:intergenic | 35.0% |
| TTGGAACAGAATGAAGAGAA+GGG | - | chr7_3:74935950-74935969 | None:intergenic | 35.0% | |
| !! | CCAAAAAATTCAGGTTGGAA+TGG | - | chr7_3:74935991-74936010 | None:intergenic | 35.0% |
| !!! | CCATTCCAACCTGAATTTTT+TGG | + | chr7_3:74935988-74936007 | Msa1123930:five_prime_UTR | 35.0% |
| GCATTGCTTTCTTCCATAAA+TGG | - | chr7_3:74936069-74936088 | None:intergenic | 35.0% | |
| !!! | TTTGTGATGGGTTTTTTCAC+AGG | + | chr7_3:74936106-74936125 | Msa1123930:CDS | 35.0% |
| !!! | GTTTTTTGGCTATGGATTCT+AGG | - | chr7_3:74936268-74936287 | None:intergenic | 35.0% |
| !!! | TTGTTGCTGCTGTTGTTTTT+TGG | - | chr7_3:74936282-74936301 | None:intergenic | 35.0% |
| ! | AGTCTTTTAGGCTTCAATTG+AGG | - | chr7_3:74936328-74936347 | None:intergenic | 35.0% |
| !!! | TAAGGTAGTTTTGTGCTTGT+TGG | - | chr7_3:74936367-74936386 | None:intergenic | 35.0% |
| TTGTTGATCAACCATTGCTT+TGG | + | chr7_3:74936428-74936447 | Msa1123930:CDS | 35.0% | |
| GGAAAACTGGTATCATGTAT+AGG | + | chr7_3:74936500-74936519 | Msa1123930:CDS | 35.0% | |
| ! | TGTTTTCAGTGAAGAGTTCA+TGG | + | chr7_3:74936528-74936547 | Msa1123930:CDS | 35.0% |
| ATTGAGCATCATAGACTAAG+TGG | + | chr7_3:74936598-74936617 | Msa1123930:CDS | 35.0% | |
| TTGAGCATCATAGACTAAGT+GGG | + | chr7_3:74936599-74936618 | Msa1123930:CDS | 35.0% | |
| ACTCAATATCTCTAAGCTGT+TGG | - | chr7_3:74936672-74936691 | None:intergenic | 35.0% | |
| !! | TTGGTGTCACTAAAATTCGA+GGG | - | chr7_3:74936969-74936988 | None:intergenic | 35.0% |
| !! | ATTGGTGTCACTAAAATTCG+AGG | - | chr7_3:74936970-74936989 | None:intergenic | 35.0% |
| CATGATATTTCACACTTCCT+AGG | + | chr7_3:74937241-74937260 | Msa1123930:intron | 35.0% | |
| TTTGCAAGTAATAATGCCGT+TGG | - | chr7_3:74937378-74937397 | None:intergenic | 35.0% | |
| ATTCAATAGCTCCATTCTCT+GGG | + | chr7_3:74937515-74937534 | Msa1123930:CDS | 35.0% | |
| ATCAGTTAAGGATACTTCTC+AGG | + | chr7_3:74937563-74937582 | Msa1123930:CDS | 35.0% | |
| TCTATCATTTACGCTCTGAT+AGG | + | chr7_3:74937883-74937902 | Msa1123930:intron | 35.0% | |
| ! | GTCTTTCAGACTTTTACCTA+CGG | - | chr7_3:74938051-74938070 | None:intergenic | 35.0% |
| TCCTATTTGTCTATGGGTAA+AGG | + | chr7_3:74938111-74938130 | Msa1123930:intron | 35.0% | |
| !! | AGTTAGGTTGGATATCTTGT+TGG | + | chr7_3:74938282-74938301 | Msa1123930:intron | 35.0% |
| TAAAGTAGTTGGATGAGGTT+GGG | - | chr7_3:74938547-74938566 | None:intergenic | 35.0% | |
| TTAAAGTAGTTGGATGAGGT+TGG | - | chr7_3:74938548-74938567 | None:intergenic | 35.0% | |
| CACATGTCATAGACATTATG+CGG | - | chr7_3:74938682-74938701 | None:intergenic | 35.0% | |
| AGGTTCTATCTTGGAGTAAA+AGG | - | chr7_3:74938721-74938740 | None:intergenic | 35.0% | |
| !! | TTGTCACTTTGCATTTCATG+TGG | - | chr7_3:74938776-74938795 | None:intergenic | 35.0% |
| !! | ATTTGAGGCTACTTCTTTTG+TGG | + | chr7_3:74938890-74938909 | Msa1123930:intron | 35.0% |
| CACAAACTTGATTGAGTTCT+AGG | - | chr7_3:74938920-74938939 | None:intergenic | 35.0% | |
| TAGAAACTAGTGCTTGGAAA+TGG | - | chr7_3:74939040-74939059 | None:intergenic | 35.0% | |
| AGTAGTTAGAAACTAGTGCT+TGG | - | chr7_3:74939046-74939065 | None:intergenic | 35.0% | |
| TATGAAAGCAACTCTTGTAC+TGG | - | chr7_3:74939131-74939150 | None:intergenic | 35.0% | |
| GTTGGAACAGAATGAAGAGA+AGG | - | chr7_3:74935951-74935970 | None:intergenic | 40.0% | |
| ! | AGAAGATGGGTTCAGTAGAA+AGG | + | chr7_3:74936029-74936048 | Msa1123930:exon | 40.0% |
| GTTGACATTTGAGAAGGTTG+TGG | - | chr7_3:74936211-74936230 | None:intergenic | 40.0% | |
| !!! | CTGCTGTTGTTTTTTGGCTA+TGG | - | chr7_3:74936276-74936295 | None:intergenic | 40.0% |
| TTAGGCTTCAATTGAGGTAG+TGG | - | chr7_3:74936322-74936341 | None:intergenic | 40.0% | |
| TCGACAACAATCCAAAGCAA+TGG | - | chr7_3:74936442-74936461 | None:intergenic | 40.0% | |
| CTCTGGCAATTCAGTTGATT+CGG | - | chr7_3:74936473-74936492 | None:intergenic | 40.0% | |
| CTGAATTGCCAGAGATATTG+AGG | + | chr7_3:74936479-74936498 | Msa1123930:CDS | 40.0% | |
| ! | CCAGTTTTCCTCAATATCTC+TGG | - | chr7_3:74936490-74936509 | None:intergenic | 40.0% |
| CCAGAGATATTGAGGAAAAC+TGG | + | chr7_3:74936487-74936506 | Msa1123930:CDS | 40.0% | |
| AGCAAATAGAAGGGGTAGAA+AGG | - | chr7_3:74936698-74936717 | None:intergenic | 40.0% | |
| ACTTGAGAAGAGTCACAAAC+TGG | - | chr7_3:74937426-74937445 | None:intergenic | 40.0% | |
| TGTGACTCTTCTCAAGTCAT+TGG | + | chr7_3:74937429-74937448 | Msa1123930:CDS | 40.0% | |
| ACTCTTCTCAAGTCATTGGA+TGG | + | chr7_3:74937433-74937452 | Msa1123930:CDS | 40.0% | |
| CATTCAATAGCTCCATTCTC+TGG | + | chr7_3:74937514-74937533 | Msa1123930:CDS | 40.0% | |
| GCCTTTACCCATAGACAAAT+AGG | - | chr7_3:74938115-74938134 | None:intergenic | 40.0% | |
| AAAGCTCTTAGGTAGAGTAG+AGG | - | chr7_3:74938853-74938872 | None:intergenic | 40.0% | |
| !! | GCAAGTAGTTCTAGAAGATG+AGG | + | chr7_3:74938942-74938961 | Msa1123930:CDS | 40.0% |
| ! | AGAAGATGAGGCTAAGTTGA+AGG | + | chr7_3:74938954-74938973 | Msa1123930:CDS | 40.0% |
| ! | GAAGATGAGGCTAAGTTGAA+GGG | + | chr7_3:74938955-74938974 | Msa1123930:CDS | 40.0% |
| !!! | AGCAAGATTTTGGAGCAGTA+CGG | - | chr7_3:74938988-74939007 | None:intergenic | 40.0% |
| ACTGCTCCAAAATCTTGCTA+TGG | + | chr7_3:74938989-74939008 | Msa1123930:CDS | 40.0% | |
| ! | GAAACGCCATAGCAAGATTT+TGG | - | chr7_3:74938998-74939017 | None:intergenic | 40.0% |
| ! | TTCACAGGTTTAGCTCCAAC+AGG | + | chr7_3:74936121-74936140 | Msa1123930:CDS | 45.0% |
| CAGTGAAGAGTTCATGGACT+TGG | + | chr7_3:74936534-74936553 | Msa1123930:CDS | 45.0% | |
| AGTGGGATTGTTCACTTTGC+TGG | + | chr7_3:74936616-74936635 | Msa1123930:CDS | 45.0% | |
| TGACAATTGAGCAGGGTCTT+TGG | + | chr7_3:74937345-74937364 | Msa1123930:intron | 45.0% | |
| GGGTCGAACTTCATCAGTTA+AGG | + | chr7_3:74937551-74937570 | Msa1123930:CDS | 45.0% | |
| !!! | AAGATTTTGGAGCAGTACGG+TGG | - | chr7_3:74938985-74939004 | None:intergenic | 45.0% |
| TGGCTATGGATTCTAGGTGC+TGG | - | chr7_3:74936262-74936281 | None:intergenic | 50.0% | |
| !! | TGAGCAGGGTCTTTGGAACA+TGG | + | chr7_3:74937352-74937371 | Msa1123930:intron | 50.0% |
| !! | GGTCTTTGGAACATGGCCAA+CGG | + | chr7_3:74937359-74937378 | Msa1123930:CDS | 50.0% |
| AAGTTCGACCCCATCTCTCA+GGG | - | chr7_3:74937542-74937561 | None:intergenic | 50.0% | |
| TCTCTCAGGGTCCCAGAGAA+TGG | - | chr7_3:74937529-74937548 | None:intergenic | 55.0% | |
| !! | TTCTCTGGGACCCTGAGAGA+TGG | + | chr7_3:74937529-74937548 | Msa1123930:CDS | 55.0% |
| !! | TCTCTGGGACCCTGAGAGAT+GGG | + | chr7_3:74937530-74937549 | Msa1123930:CDS | 55.0% |
| GAAGTTCGACCCCATCTCTC+AGG | - | chr7_3:74937543-74937562 | None:intergenic | 55.0% | |
| GGCCTTGATGCACTTGCACA+GGG | - | chr7_3:74937947-74937966 | None:intergenic | 55.0% | |
| TGCAAGTGCATCAAGGCCCT+TGG | + | chr7_3:74937949-74937968 | Msa1123930:intron | 55.0% | |
| !!! | ATTTTGAGGCCCCGTGCCAA+GGG | - | chr7_3:74937968-74937987 | None:intergenic | 55.0% |
| !!! | AATTTTGAGGCCCCGTGCCA+AGG | - | chr7_3:74937969-74937988 | None:intergenic | 55.0% |
| !! | TAGTGACGGATTTCGGCCGT+AGG | - | chr7_3:74938017-74938036 | None:intergenic | 55.0% |
| TAACGGGGCCTCCGAATTGT+CGG | + | chr7_3:74938215-74938234 | Msa1123930:intron | 55.0% | |
| !! | CTCTGGGACCCTGAGAGATG+GGG | + | chr7_3:74937531-74937550 | Msa1123930:CDS | 60.0% |
| GGCCCTGTGCAAGTGCATCA+AGG | + | chr7_3:74937942-74937961 | Msa1123930:intron | 60.0% | |
| GGGCCTTGATGCACTTGCAC+AGG | - | chr7_3:74937948-74937967 | None:intergenic | 60.0% | |
| GTGCATCAAGGCCCTTGGCA+CGG | + | chr7_3:74937954-74937973 | Msa1123930:intron | 60.0% | |
| TGCATCAAGGCCCTTGGCAC+GGG | + | chr7_3:74937955-74937974 | Msa1123930:intron | 60.0% | |
| AACGGGGCCTCCGAATTGTC+GGG | + | chr7_3:74938216-74938235 | Msa1123930:intron | 60.0% | |
| TAGGGCCGTCCCCGACAATT+CGG | - | chr7_3:74938229-74938248 | None:intergenic | 60.0% | |
| GCATCAAGGCCCTTGGCACG+GGG | + | chr7_3:74937956-74937975 | Msa1123930:intron | 65.0% | |
| ACGGGGCCTCCGAATTGTCG+GGG | + | chr7_3:74938217-74938236 | Msa1123930:intron | 65.0% | |
| GGCCTCCGAATTGTCGGGGA+CGG | + | chr7_3:74938221-74938240 | Msa1123930:intron | 65.0% | |
| GGCCGTCCCCGACAATTCGG+AGG | - | chr7_3:74938226-74938245 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 74935795 | 74939324 | 74935795 | ID=Msa1123930;Name=Msa1123930 |
| chr7_3 | mRNA | 74935795 | 74939324 | 74935795 | ID=Msa1123930-mRNA-1;Parent=Msa1123930;Name=Msa1123930-mRNA-1;_AED=0.00;_eAED=0.00;_QI=239|1|1|1|1|1|3|271|337 |
| chr7_3 | exon | 74935795 | 74936689 | 74935795 | ID=Msa1123930-mRNA-1:exon:20058;Parent=Msa1123930-mRNA-1 |
| chr7_3 | exon | 74937359 | 74937584 | 74937359 | ID=Msa1123930-mRNA-1:exon:20059;Parent=Msa1123930-mRNA-1 |
| chr7_3 | exon | 74938922 | 74939324 | 74938922 | ID=Msa1123930-mRNA-1:exon:20060;Parent=Msa1123930-mRNA-1 |
| chr7_3 | five_prime_UTR | 74935795 | 74936033 | 74935795 | ID=Msa1123930-mRNA-1:five_prime_utr;Parent=Msa1123930-mRNA-1 |
| chr7_3 | CDS | 74936034 | 74936689 | 74936034 | ID=Msa1123930-mRNA-1:cds;Parent=Msa1123930-mRNA-1 |
| chr7_3 | CDS | 74937359 | 74937584 | 74937359 | ID=Msa1123930-mRNA-1:cds;Parent=Msa1123930-mRNA-1 |
| chr7_3 | CDS | 74938922 | 74939053 | 74938922 | ID=Msa1123930-mRNA-1:cds;Parent=Msa1123930-mRNA-1 |
| chr7_3 | three_prime_UTR | 74939054 | 74939324 | 74939054 | ID=Msa1123930-mRNA-1:three_prime_utr;Parent=Msa1123930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
