AlfalfaGEDB | Msa1426070

M. sativa cultivar zhongmu-4 / Msa1426070

KEGG: K20869
GO: GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0031090 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042285 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0098588 GO:0098791 GO:1901576
PFAM: PF03360.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1426070	XP_024625178.1	97.929	338	6	1	1	337	1	338	0.0	676

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1426070	sp\|Q9ZQC6\|IRX9_ARATH	59.767	343	123	4	1	328	1	343	1.08e-143	412

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1426070	Q599J6	97.929	338	6	1	1	337	1	338	0.0	676

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0040660	Msa1426070	0.846921	1.602719e-59	-8.615850e-47
Msa0081250	Msa1426070	0.809288	2.037931e-50	-8.615850e-47
Msa0184680	Msa1426070	0.859206	4.856362e-63	-8.615850e-47
Msa0193850	Msa1426070	0.817897	2.597574e-52	-8.615850e-47
Msa0199960	Msa1426070	0.824581	7.471168e-54	-8.615850e-47
Msa0242490	Msa1426070	0.840704	7.405604e-58	-8.615850e-47
Msa0243600	Msa1426070	0.867713	1.117223e-65	-8.615850e-47
Msa0267660	Msa1426070	0.812275	4.601135e-51	-8.615850e-47
Msa0274440	Msa1426070	0.825591	4.311660e-54	-8.615850e-47
Msa0280690	Msa1426070	0.844594	6.861867e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1426070	MtrunA17_Chr7g0263751	97.929	338	6	1	1	337	1	338	0.0	676
Msa1426070	MtrunA17_Chr3g0140951	48.035	229	110	3	103	324	187	413	1.44e-70	226
Msa1426070	MtrunA17_Chr3g0140001	35.817	349	195	9	3	328	70	412	9.70e-65	211
Msa1426070	MtrunA17_Chr5g0401811	25.362	276	164	8	100	336	147	419	9.22e-16	78.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1426070	AT2G37090.1	59.767	343	123	4	1	328	1	343	1.10e-144	412
Msa1426070	AT1G27600.2	40.625	320	166	7	14	324	62	366	5.91e-74	234
Msa1426070	AT1G27600.1	40.625	320	166	7	14	324	62	366	5.91e-74	234
Msa1426070	AT5G67230.1	25.000	272	160	8	95	324	143	412	3.27e-16	79.7

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Find 61 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGTTCGACCCCATCTCTCA+GGG	0.598644	tig0025942:-19045	None:intergenic
AATAATAAAGTATATAGTTT+AGG	0.313120	tig0025942:-17422	None:intergenic
AATATTAAAGATTTACCTGT+TGG	0.438372	tig0025942:-17640	None:intergenic
ACAAAAGCTAATATTTAGTT+TGG	0.322846	tig0025942:+17333	Msa1426070:five_prime_UTR
ACTACTATACATCATATGTT+AGG	0.313282	tig0025942:+20567	Msa1426070:three_prime_UTR
ACTCAATATCTCTAAGCTGT+TGG	0.489245	tig0025942:-18173	None:intergenic
ACTCTTCTCAAGTCATTGGA+TGG	0.578421	tig0025942:+18939	Msa1426070:CDS
ACTGCTCCAAAATCTTGCTA+TGG	0.580047	tig0025942:+20496	Msa1426070:CDS
ACTTGAGAAGAGTCACAAAC+TGG	0.500366	tig0025942:-18929	None:intergenic
AGAAGATGAGGCTAAGTTGA+AGG	0.485965	tig0025942:+20461	Msa1426070:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAAATGTTGAGGTTATGAT+TGG	-	tig0025942:17364-17383	None:intergenic	30.0%
ATATAGTTTAGGTGCATTTG+TGG	-	tig0025942:17414-17433	None:intergenic	30.0%
CATTGCTTTCTTCCATAAAT+GGG	-	tig0025942:17572-17591	None:intergenic	30.0%
AAAAAAATGTAGCTAGTAGG+TGG	+	tig0025942:18328-18347	Msa1426070:intron	30.0%
AGGCTAGTAAGAAAATCTTT+AGG	+	tig0025942:18393-18412	Msa1426070:intron	30.0%
TAATCATCATCACTAGTGTT+AGG	-	tig0025942:18423-18442	None:intergenic	30.0%
AGTGTGAAATAAAATCACCT+AGG	-	tig0025942:18766-18785	None:intergenic	30.0%
TATTCATTTGACAATTGAGC+AGG	+	tig0025942:18843-18862	Msa1426070:intron	30.0%
ATTCATTTGACAATTGAGCA+GGG	+	tig0025942:18844-18863	Msa1426070:intron	30.0%
GCTTCAATAATAAAACTCTG+GGG	+	tig0025942:19424-19443	Msa1426070:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0025942	gene	17299	20832	17299	ID=Msa1426070;Name=Msa1426070
tig0025942	mRNA	17299	20832	17299	ID=Msa1426070-mRNA-1;Parent=Msa1426070;Name=Msa1426070-mRNA-1;_AED=0.00;_eAED=0.00;_QI=239\|1\|1\|1\|0.5\|0.66\|3\|272\|337
tig0025942	exon	17299	18193	17299	ID=Msa1426070-mRNA-1:exon:4657;Parent=Msa1426070-mRNA-1
tig0025942	exon	18865	19090	18865	ID=Msa1426070-mRNA-1:exon:4658;Parent=Msa1426070-mRNA-1
tig0025942	exon	20429	20832	20429	ID=Msa1426070-mRNA-1:exon:4659;Parent=Msa1426070-mRNA-1
tig0025942	five_prime_UTR	17299	17537	17299	ID=Msa1426070-mRNA-1:five_prime_utr;Parent=Msa1426070-mRNA-1
tig0025942	CDS	17538	18193	17538	ID=Msa1426070-mRNA-1:cds;Parent=Msa1426070-mRNA-1
tig0025942	CDS	18865	19090	18865	ID=Msa1426070-mRNA-1:cds;Parent=Msa1426070-mRNA-1
tig0025942	CDS	20429	20560	20429	ID=Msa1426070-mRNA-1:cds;Parent=Msa1426070-mRNA-1
tig0025942	three_prime_UTR	20561	20832	20561	ID=Msa1426070-mRNA-1:three_prime_utr;Parent=Msa1426070-mRNA-1

Gene Sequence

>Msa1426070

ATGGGTTCAGTAGAAAGGTCAAAGAAAAAAACCCATTTATGGAAGAAAGCAATGCTTCATTTTTCTTTATGTTTTGTGATGGGTTTTTTCACAGGTTTAGCTCCAACAGGTAAATCTTTAATATTTTCTAGCAAATTTGAAATTTCAGTCTCAAATATAACAGAAGTTGTAGCACCACAACCTTCTCAAATGTCAACAAAAAATGGTAACAAAAGTTGGACAGCTCCAGCACCTAGAATCCATAGCCAAAAAACAACAGCAGCAACAACAAAATTGCATGTAAAACCACTACCTCAATTGAAGCCTAAAAGACTTCTAATCATAGTAACACCAACAAGCACAAAACTACCTTATCAAAATGTTTTTTTGAGAAGATTGGCAAATACTATAAAGCTTGTTGATCAACCATTGCTTTGGATTGTTGTCGAAGCGAAAACCGAATCAACTGAATTGCCAGAGATATTGAGGAAAACTGGTATCATGTATAGGCATGTTGTTTTCAGTGAAGAGTTCATGGACTTGGAAGCTGAATTGAATCATCAAAGAAATTTAGCTCTTAGACACATTGAGCATCATAGACTAAGTGGGATTGTTCACTTTGCTGGCCTTTCTAATGTTTATGATCTTCAATTCTTCCAACAGCTTAGAGATATTGAGGTCTTTGGAACATGGCCAACGGCATTATTACTTGCAAATAGAAAAAGAGTGATAATTGAAGGACCAGTTTGTGACTCTTCTCAAGTCATTGGATGGCATTTAAGAAGTATGAACAATGAGACAATCACTTCTCCCATTCATATTTCAAGTTTTGCATTCAATAGCTCCATTCTCTGGGACCCTGAGAGATGGGGTCGAACTTCATCAGTTAAGGATACTTCTCAGAACTCAATCAAGTTTGTGAAGCAAGTAGTTCTAGAAGATGAGGCTAAGTTGAAGGGAATTCCACCGTACTGCTCCAAAATCTTGCTATGGCGTTTCAACTTTTTTTATGCACGCACCATTTCCAAGCACTAG

Protein sequence

>Msa1426070

MGSVERSKKKTHLWKKAMLHFSLCFVMGFFTGLAPTGKSLIFSSKFEISVSNITEVVAPQPSQMSTKNGNKSWTAPAPRIHSQKTTAATTKLHVKPLPQLKPKRLLIIVTPTSTKLPYQNVFLRRLANTIKLVDQPLLWIVVEAKTESTELPEILRKTGIMYRHVVFSEEFMDLEAELNHQRNLALRHIEHHRLSGIVHFAGLSNVYDLQFFQQLRDIEVFGTWPTALLLANRKRVIIEGPVCDSSQVIGWHLRSMNNETITSPIHISSFAFNSSILWDPERWGRTSSVKDTSQNSIKFVKQVVLEDEAKLKGIPPYCSKILLWRFNFFYARTISKH*