Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426070 | XP_024625178.1 | 97.929 | 338 | 6 | 1 | 1 | 337 | 1 | 338 | 0.0 | 676 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426070 | sp|Q9ZQC6|IRX9_ARATH | 59.767 | 343 | 123 | 4 | 1 | 328 | 1 | 343 | 1.08e-143 | 412 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426070 | Q599J6 | 97.929 | 338 | 6 | 1 | 1 | 337 | 1 | 338 | 0.0 | 676 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040660 | Msa1426070 | 0.846921 | 1.602719e-59 | -8.615850e-47 |
| Msa0081250 | Msa1426070 | 0.809288 | 2.037931e-50 | -8.615850e-47 |
| Msa1412710 | Msa1426070 | 0.810296 | 1.237178e-50 | -8.615850e-47 |
| Msa1426070 | Msa1430750 | 0.825919 | 3.605764e-54 | -8.615850e-47 |
| Msa1426070 | Msa1434480 | 0.802867 | 4.575478e-49 | -8.615850e-47 |
| Msa1426070 | Msa1436420 | 0.861326 | 1.109950e-63 | -8.615850e-47 |
| Msa1426070 | Msa1445050 | 0.807758 | 4.323673e-50 | -8.615850e-47 |
| Msa1426070 | Msa1446110 | 0.850786 | 1.355168e-60 | -8.615850e-47 |
| Msa0629600 | Msa1426070 | 0.804380 | 2.221358e-49 | -8.615850e-47 |
| Msa0642950 | Msa1426070 | 0.837286 | 5.686718e-57 | -8.615850e-47 |
| Msa0667370 | Msa1426070 | 0.810589 | 1.069125e-50 | -8.615850e-47 |
| Msa0682500 | Msa1426070 | 0.803459 | 3.451474e-49 | -8.615850e-47 |
| Msa0688820 | Msa1426070 | 0.889539 | 2.213296e-73 | -8.615850e-47 |
| Msa0184680 | Msa1426070 | 0.859206 | 4.856362e-63 | -8.615850e-47 |
| Msa0193850 | Msa1426070 | 0.817897 | 2.597574e-52 | -8.615850e-47 |
| Msa0199960 | Msa1426070 | 0.824581 | 7.471168e-54 | -8.615850e-47 |
| Msa1264570 | Msa1426070 | 0.830437 | 2.937817e-55 | -8.615850e-47 |
| Msa1340700 | Msa1426070 | 0.861020 | 1.375655e-63 | -8.615850e-47 |
| Msa0373310 | Msa1426070 | 0.807309 | 5.382252e-50 | -8.615850e-47 |
| Msa0389500 | Msa1426070 | 0.800108 | 1.682150e-48 | -8.615850e-47 |
| Msa0392380 | Msa1426070 | 0.866020 | 3.869429e-65 | -8.615850e-47 |
| Msa0421890 | Msa1426070 | 0.804081 | 2.563588e-49 | -8.615850e-47 |
| Msa0440320 | Msa1426070 | 0.874207 | 8.087668e-68 | -8.615850e-47 |
| Msa0467770 | Msa1426070 | 0.810107 | 1.358595e-50 | -8.615850e-47 |
| Msa0475290 | Msa1426070 | 0.816720 | 4.782331e-52 | -8.615850e-47 |
| Msa1037550 | Msa1426070 | 0.863479 | 2.417542e-64 | -8.615850e-47 |
| Msa1063500 | Msa1426070 | 0.802038 | 6.779482e-49 | -8.615850e-47 |
| Msa1078930 | Msa1426070 | 0.996514 | 1.660862e-228 | -8.615850e-47 |
| Msa0242490 | Msa1426070 | 0.840704 | 7.405604e-58 | -8.615850e-47 |
| Msa0243600 | Msa1426070 | 0.867713 | 1.117223e-65 | -8.615850e-47 |
| Msa0267660 | Msa1426070 | 0.812275 | 4.601135e-51 | -8.615850e-47 |
| Msa0274440 | Msa1426070 | 0.825591 | 4.311660e-54 | -8.615850e-47 |
| Msa0280690 | Msa1426070 | 0.844594 | 6.861867e-59 | -8.615850e-47 |
| Msa0282220 | Msa1426070 | 0.862894 | 3.666397e-64 | -8.615850e-47 |
| Msa0300210 | Msa1426070 | 0.815581 | 8.589834e-52 | -8.615850e-47 |
| Msa0314170 | Msa1426070 | 0.837598 | 4.729625e-57 | -8.615850e-47 |
| Msa0319940 | Msa1426070 | 0.846442 | 2.165854e-59 | -8.615850e-47 |
| Msa1123930 | Msa1426070 | 0.988939 | 5.006916e-176 | -8.615850e-47 |
| Msa1130430 | Msa1426070 | 0.830776 | 2.427069e-55 | -8.615850e-47 |
| Msa1169230 | Msa1426070 | 0.959225 | 3.301336e-117 | -8.615850e-47 |
| Msa1222590 | Msa1426070 | 0.830183 | 3.390014e-55 | -8.615850e-47 |
| Msa0487500 | Msa1426070 | 0.879614 | 1.079624e-69 | -8.615850e-47 |
| Msa0514170 | Msa1426070 | 0.809664 | 1.692107e-50 | -8.615850e-47 |
| Msa0528570 | Msa1426070 | 0.803362 | 3.614473e-49 | -8.615850e-47 |
| Msa0547110 | Msa1426070 | 0.808578 | 2.891597e-50 | -8.615850e-47 |
| Msa0601820 | Msa1426070 | 0.872956 | 2.134014e-67 | -8.615850e-47 |
| Msa0968350 | Msa1426070 | 0.992491 | 1.300518e-193 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426070 | MtrunA17_Chr7g0263751 | 97.929 | 338 | 6 | 1 | 1 | 337 | 1 | 338 | 0.0 | 676 |
| Msa1426070 | MtrunA17_Chr3g0140951 | 48.035 | 229 | 110 | 3 | 103 | 324 | 187 | 413 | 1.44e-70 | 226 |
| Msa1426070 | MtrunA17_Chr3g0140001 | 35.817 | 349 | 195 | 9 | 3 | 328 | 70 | 412 | 9.70e-65 | 211 |
| Msa1426070 | MtrunA17_Chr5g0401811 | 25.362 | 276 | 164 | 8 | 100 | 336 | 147 | 419 | 9.22e-16 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426070 | AT2G37090.1 | 59.767 | 343 | 123 | 4 | 1 | 328 | 1 | 343 | 1.10e-144 | 412 |
| Msa1426070 | AT1G27600.2 | 40.625 | 320 | 166 | 7 | 14 | 324 | 62 | 366 | 5.91e-74 | 234 |
| Msa1426070 | AT1G27600.1 | 40.625 | 320 | 166 | 7 | 14 | 324 | 62 | 366 | 5.91e-74 | 234 |
| Msa1426070 | AT5G67230.1 | 25.000 | 272 | 160 | 8 | 95 | 324 | 143 | 412 | 3.27e-16 | 79.7 |
Find 61 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTGCTTTCTTCCATAAA+TGG | 0.140314 | tig0025942:-17570 | None:intergenic |
| GAAACGCCATAGCAAGATTT+TGG | 0.205672 | tig0025942:-20502 | None:intergenic |
| TGGCAGCACATATTTGTTAA+TGG | 0.245165 | tig0025942:-17391 | None:intergenic |
| CATTCAATAGCTCCATTCTC+TGG | 0.283106 | tig0025942:+19020 | Msa1426070:CDS |
| AGTGGGATTGTTCACTTTGC+TGG | 0.287605 | tig0025942:+18120 | Msa1426070:CDS |
| TGACAATTGAGCAGGGTCTT+TGG | 0.303432 | tig0025942:+18851 | Msa1426070:intron |
| AATAATAAAGTATATAGTTT+AGG | 0.313120 | tig0025942:-17422 | None:intergenic |
| ACTACTATACATCATATGTT+AGG | 0.313282 | tig0025942:+20567 | Msa1426070:three_prime_UTR |
| ACAAAAGCTAATATTTAGTT+TGG | 0.322846 | tig0025942:+17333 | Msa1426070:five_prime_UTR |
| CAGTGAAGAGTTCATGGACT+TGG | 0.355535 | tig0025942:+18038 | Msa1426070:CDS |
| TGTGACTCTTCTCAAGTCAT+TGG | 0.366016 | tig0025942:+18935 | Msa1426070:CDS |
| CTCTGGCAATTCAGTTGATT+CGG | 0.377196 | tig0025942:-17974 | None:intergenic |
| TTGGAGGTATTTCATATGTA+AGG | 0.398590 | tig0025942:-17310 | None:intergenic |
| CATTGCTTTCTTCCATAAAT+GGG | 0.399629 | tig0025942:-17569 | None:intergenic |
| CCAGAGATATTGAGGAAAAC+TGG | 0.401504 | tig0025942:+17991 | Msa1426070:CDS |
| GAATAAAATTGAGTAATTGT+TGG | 0.406917 | tig0025942:-17470 | None:intergenic |
| TGGCTATGGATTCTAGGTGC+TGG | 0.412979 | tig0025942:-17763 | None:intergenic |
| TTAGGCTTCAATTGAGGTAG+TGG | 0.414050 | tig0025942:-17823 | None:intergenic |
| TTCACAGGTTTAGCTCCAAC+AGG | 0.416327 | tig0025942:+17625 | Msa1426070:CDS |
| TTCTCTGGGACCCTGAGAGA+TGG | 0.425575 | tig0025942:+19035 | Msa1426070:CDS |
| GAAGTTCGACCCCATCTCTC+AGG | 0.437016 | tig0025942:-19046 | None:intergenic |
| TCTCTGGGACCCTGAGAGAT+GGG | 0.437280 | tig0025942:+19036 | Msa1426070:CDS |
| CTACTATACATCATATGTTA+GGG | 0.437935 | tig0025942:+20568 | Msa1426070:three_prime_UTR |
| GGGTCGAACTTCATCAGTTA+AGG | 0.438041 | tig0025942:+19057 | Msa1426070:CDS |
| AATATTAAAGATTTACCTGT+TGG | 0.438372 | tig0025942:-17640 | None:intergenic |
| ATCAGTTAAGGATACTTCTC+AGG | 0.448819 | tig0025942:+19069 | Msa1426070:CDS |
| GGAAAACTGGTATCATGTAT+AGG | 0.455162 | tig0025942:+18004 | Msa1426070:CDS |
| TGAAATGTTGAGGTTATGAT+TGG | 0.461969 | tig0025942:-17361 | None:intergenic |
| TTGTTGATCAACCATTGCTT+TGG | 0.462201 | tig0025942:+17932 | Msa1426070:CDS |
| TAGAAACTAGTGCTTGGAAA+TGG | 0.464267 | tig0025942:-20544 | None:intergenic |
| TCTCTCAGGGTCCCAGAGAA+TGG | 0.466645 | tig0025942:-19032 | None:intergenic |
| CTGAATTGCCAGAGATATTG+AGG | 0.474651 | tig0025942:+17983 | Msa1426070:CDS |
| AGAAGATGGGTTCAGTAGAA+AGG | 0.478029 | tig0025942:+17533 | Msa1426070:exon |
| TGCAAAACTTGAAATATGAA+TGG | 0.482368 | tig0025942:-18999 | None:intergenic |
| AGAAGATGAGGCTAAGTTGA+AGG | 0.485965 | tig0025942:+20461 | Msa1426070:CDS |
| GCAAAACTTGAAATATGAAT+GGG | 0.488014 | tig0025942:-18998 | None:intergenic |
| ATATAGTTTAGGTGCATTTG+TGG | 0.488627 | tig0025942:-17411 | None:intergenic |
| ACTCAATATCTCTAAGCTGT+TGG | 0.489245 | tig0025942:-18173 | None:intergenic |
| ACTTGAGAAGAGTCACAAAC+TGG | 0.500366 | tig0025942:-18929 | None:intergenic |
| TGGAAACGTTTGAAATGTTG+AGG | 0.501044 | tig0025942:-17371 | None:intergenic |
| TATGAAAGCAACTCTTGTAC+TGG | 0.507724 | tig0025942:-20635 | None:intergenic |
| GAAGATCATAAACATTAGAA+AGG | 0.518111 | tig0025942:-18143 | None:intergenic |
| GTTGACATTTGAGAAGGTTG+TGG | 0.518182 | tig0025942:-17712 | None:intergenic |
| TTGGAACAGAATGAAGAGAA+GGG | 0.523187 | tig0025942:-17451 | None:intergenic |
| ATTCAATAGCTCCATTCTCT+GGG | 0.531877 | tig0025942:+19021 | Msa1426070:CDS |
| GTTGGAACAGAATGAAGAGA+AGG | 0.540184 | tig0025942:-17452 | None:intergenic |
| ATTGAGCATCATAGACTAAG+TGG | 0.544865 | tig0025942:+18102 | Msa1426070:CDS |
| AGTAGTTAGAAACTAGTGCT+TGG | 0.546140 | tig0025942:-20550 | None:intergenic |
| TTTGCAAGTAATAATGCCGT+TGG | 0.557119 | tig0025942:-18881 | None:intergenic |
| TGAGCAGGGTCTTTGGAACA+TGG | 0.563420 | tig0025942:+18858 | Msa1426070:intron |
| GCAAGTAGTTCTAGAAGATG+AGG | 0.569238 | tig0025942:+20449 | Msa1426070:CDS |
| ACTCTTCTCAAGTCATTGGA+TGG | 0.578421 | tig0025942:+18939 | Msa1426070:CDS |
| ACTGCTCCAAAATCTTGCTA+TGG | 0.580047 | tig0025942:+20496 | Msa1426070:CDS |
| GAAGATGAGGCTAAGTTGAA+GGG | 0.584310 | tig0025942:+20462 | Msa1426070:CDS |
| AAGTTCGACCCCATCTCTCA+GGG | 0.598644 | tig0025942:-19045 | None:intergenic |
| CTCTGGGACCCTGAGAGATG+GGG | 0.602550 | tig0025942:+19037 | Msa1426070:CDS |
| TCGACAACAATCCAAAGCAA+TGG | 0.628366 | tig0025942:-17943 | None:intergenic |
| TTGAGCATCATAGACTAAGT+GGG | 0.628829 | tig0025942:+18103 | Msa1426070:CDS |
| GGTCTTTGGAACATGGCCAA+CGG | 0.646193 | tig0025942:+18865 | Msa1426070:CDS |
| TACTATACATCATATGTTAG+GGG | 0.651812 | tig0025942:+20569 | Msa1426070:three_prime_UTR |
| TATACGGAAGACAATTACAA+AGG | 0.665200 | tig0025942:-20690 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAAAGTATATAGTTT+AGG | - | tig0025942:17425-17444 | None:intergenic | 10.0% |
| !! | ACACTTAAAAAAAATTATAT+TGG | + | tig0025942:18690-18709 | Msa1426070:intron | 10.0% |
| !! | ATAAAAATAAAAATAAGTCA+AGG | - | tig0025942:19207-19226 | None:intergenic | 10.0% |
| !! | AATAAAAATGTTAAATAGTT+TGG | + | tig0025942:19882-19901 | Msa1426070:intron | 10.0% |
| !!! | CAAATAGTTTTTTTTTTTAA+TGG | + | tig0025942:19928-19947 | Msa1426070:intron | 10.0% |
| !! | ACACAAATAAAAAATATATA+CGG | - | tig0025942:20709-20728 | None:intergenic | 10.0% |
| !!! | TGATTATTTTTTTAACAAAA+AGG | + | tig0025942:20794-20813 | Msa1426070:three_prime_UTR | 10.0% |
| !! | AAAAATTTACCAAAAAATTC+AGG | - | tig0025942:17504-17523 | None:intergenic | 15.0% |
| !!! | AATAAACAACTTTTTTCAAT+TGG | + | tig0025942:18361-18380 | Msa1426070:intron | 15.0% |
| !! | ATATCAAAAACCAAATTTAT+TGG | - | tig0025942:18493-18512 | None:intergenic | 15.0% |
| !!! | TTTAATCTTCACAATATTTT+CGG | - | tig0025942:19247-19266 | None:intergenic | 15.0% |
| !! | AAAAATTGTCAAGTTTATAA+CGG | + | tig0025942:19704-19723 | Msa1426070:intron | 15.0% |
| !!! | ACTAAATATTAGCTTTTGTT+TGG | - | tig0025942:17332-17351 | None:intergenic | 20.0% |
| !! | ACAAAAGCTAATATTTAGTT+TGG | + | tig0025942:17333-17352 | Msa1426070:five_prime_UTR | 20.0% |
| !! | GAATAAAATTGAGTAATTGT+TGG | - | tig0025942:17473-17492 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTATGTTTTGTGA+TGG | + | tig0025942:17597-17616 | Msa1426070:CDS | 20.0% |
| !!! | TTTTCTTTATGTTTTGTGAT+GGG | + | tig0025942:17598-17617 | Msa1426070:CDS | 20.0% |
| !! | AATATTAAAGATTTACCTGT+TGG | - | tig0025942:17643-17662 | None:intergenic | 20.0% |
| !!! | CTCAAAAAAACATTTTGATA+AGG | - | tig0025942:17889-17908 | None:intergenic | 20.0% |
| !!! | AAATGTTTTTTTGAGAAGAT+TGG | + | tig0025942:17894-17913 | Msa1426070:CDS | 20.0% |
| !!! | AATTAGTTTAGCAAATAGAA+GGG | - | tig0025942:18211-18230 | None:intergenic | 20.0% |
| !!! | AAATTAGTTTAGCAAATAGA+AGG | - | tig0025942:18212-18231 | None:intergenic | 20.0% |
| !!! | TGTTAATTTGTTATGTCTAA+TGG | + | tig0025942:18262-18281 | Msa1426070:intron | 20.0% |
| !! | TTAAAAAAAATGTAGCTAGT+AGG | + | tig0025942:18325-18344 | Msa1426070:intron | 20.0% |
| !! | AGTGTAGATATTTAACAATT+TGG | - | tig0025942:18675-18694 | None:intergenic | 20.0% |
| !! | AATGTTATAATTACACATCA+TGG | + | tig0025942:19094-19113 | Msa1426070:intron | 20.0% |
| !! | ACAGTTAAATATATGAGTAA+TGG | - | tig0025942:19654-19673 | None:intergenic | 20.0% |
| !! | AAAATTGTCAAGTTTATAAC+GGG | + | tig0025942:19705-19724 | Msa1426070:intron | 20.0% |
| !!! | AAGCAATTTATTTGAGTTTA+GGG | - | tig0025942:19753-19772 | None:intergenic | 20.0% |
| !! | TCAAATACACTTATAAAGTT+AGG | + | tig0025942:19772-19791 | Msa1426070:intron | 20.0% |
| !! | AAAATGTTAAATAGTTTGGT+TGG | + | tig0025942:19886-19905 | Msa1426070:intron | 20.0% |
| !!! | TTTTTCCTTTTTAAAGTAGT+TGG | - | tig0025942:20065-20084 | None:intergenic | 20.0% |
| !!! | AATTGAGATATATCTAAAGT+AGG | - | tig0025942:20248-20267 | None:intergenic | 20.0% |
| !!! | AAATATTAGCTTTTGTTTGG+AGG | - | tig0025942:17329-17348 | None:intergenic | 25.0% |
| ! | ATTTACCAAAAAATTCAGGT+TGG | - | tig0025942:17500-17519 | None:intergenic | 25.0% |
| !!! | TTTTTTGCTTCTTTAGAAGA+TGG | + | tig0025942:17519-17538 | Msa1426070:exon | 25.0% |
| !!! | TTTTTGCTTCTTTAGAAGAT+GGG | + | tig0025942:17520-17539 | Msa1426070:exon | 25.0% |
| ! | CAAAGAAAAAAACCCATTTA+TGG | + | tig0025942:17557-17576 | Msa1426070:CDS | 25.0% |
| !!! | TTTTTTGTTGACATTTGAGA+AGG | - | tig0025942:17721-17740 | None:intergenic | 25.0% |
| ! | TCTCAAATGTCAACAAAAAA+TGG | + | tig0025942:17721-17740 | Msa1426070:CDS | 25.0% |
| ! | CAAAAAATGGTAACAAAAGT+TGG | + | tig0025942:17734-17753 | Msa1426070:CDS | 25.0% |
| !! | ACTATGATTAGAAGTCTTTT+AGG | - | tig0025942:17844-17863 | None:intergenic | 25.0% |
| ! | GAAGATCATAAACATTAGAA+AGG | - | tig0025942:18146-18165 | None:intergenic | 25.0% |
| !! | ATTAGTTTAGCAAATAGAAG+GGG | - | tig0025942:18210-18229 | None:intergenic | 25.0% |
| ! | CTACTAGCTACATTAAAATT+AGG | - | tig0025942:18301-18320 | None:intergenic | 25.0% |
| !!! | CTAATTTTAATGTAGCTAGT+AGG | + | tig0025942:18299-18318 | Msa1426070:intron | 25.0% |
| !!! | AACAACTTTTTTCAATTGGA+TGG | + | tig0025942:18365-18384 | Msa1426070:intron | 25.0% |
| !! | TTTTCAATTGGATGGAAAAA+AGG | + | tig0025942:18373-18392 | Msa1426070:intron | 25.0% |
| ! | TTTAGTGACACCAATAAATT+TGG | + | tig0025942:18480-18499 | Msa1426070:intron | 25.0% |
| !! | AATCATTCTAAAAACATCTC+AGG | + | tig0025942:18561-18580 | Msa1426070:intron | 25.0% |
| !!! | ATCACTTTAGTCTTTTTGAA+TGG | - | tig0025942:18597-18616 | None:intergenic | 25.0% |
| !! | TTTTTCTTTTCAAATCACCT+AGG | - | tig0025942:18790-18809 | None:intergenic | 25.0% |
| ! | AGAAAAAGAGTGATAATTGA+AGG | + | tig0025942:18905-18924 | Msa1426070:CDS | 25.0% |
| ! | GCAAAACTTGAAATATGAAT+GGG | - | tig0025942:19001-19020 | None:intergenic | 25.0% |
| ! | TGCAAAACTTGAAATATGAA+TGG | - | tig0025942:19002-19021 | None:intergenic | 25.0% |
| ! | TATCAAAACCAAACTTCAAT+TGG | + | tig0025942:19140-19159 | Msa1426070:intron | 25.0% |
| ! | AACATATACCAATTGAAGTT+TGG | - | tig0025942:19151-19170 | None:intergenic | 25.0% |
| ! | ATTTGAAGAAAAGTTGTATG+CGG | + | tig0025942:19267-19286 | Msa1426070:intron | 25.0% |
| ! | TTGCTTCAATAATAAAACTC+TGG | + | tig0025942:19422-19441 | Msa1426070:intron | 25.0% |
| ! | TGCTTCAATAATAAAACTCT+GGG | + | tig0025942:19423-19442 | Msa1426070:intron | 25.0% |
| !!! | TTCGCTTTTTTCAAATTTTG+AGG | - | tig0025942:19488-19507 | None:intergenic | 25.0% |
| ! | GTAAATTCCTATTTGTCTAT+GGG | + | tig0025942:19611-19630 | Msa1426070:intron | 25.0% |
| ! | TATGAGTAATGGCTTAAATA+GGG | - | tig0025942:19643-19662 | None:intergenic | 25.0% |
| ! | ATATGAGTAATGGCTTAAAT+AGG | - | tig0025942:19644-19663 | None:intergenic | 25.0% |
| ! | AAATTGTCAAGTTTATAACG+GGG | + | tig0025942:19706-19725 | Msa1426070:intron | 25.0% |
| !! | GAAGCAATTTATTTGAGTTT+AGG | - | tig0025942:19754-19773 | None:intergenic | 25.0% |
| ! | ATACACTTATAAAGTTAGGT+TGG | + | tig0025942:19776-19795 | Msa1426070:intron | 25.0% |
| ! | TTTGGTTGGATATATCTATT+TGG | + | tig0025942:19900-19919 | Msa1426070:intron | 25.0% |
| ! | AATAAAATTTCAAGCAGTGA+AGG | - | tig0025942:20012-20031 | None:intergenic | 25.0% |
| ! | TACGCAAGAATAAAAAAACT+AGG | + | tig0025942:20088-20107 | Msa1426070:intron | 25.0% |
| ! | ACTACTATACATCATATGTT+AGG | + | tig0025942:20567-20586 | Msa1426070:three_prime_UTR | 25.0% |
| ! | CTACTATACATCATATGTTA+GGG | + | tig0025942:20568-20587 | Msa1426070:three_prime_UTR | 25.0% |
| ! | TACTATACATCATATGTTAG+GGG | + | tig0025942:20569-20588 | Msa1426070:three_prime_UTR | 25.0% |
| !!! | ATTTTGTTAGCTTACGTAAA+AGG | + | tig0025942:20735-20754 | Msa1426070:three_prime_UTR | 25.0% |
| !! | TTGGAGGTATTTCATATGTA+AGG | - | tig0025942:17313-17332 | None:intergenic | 30.0% |
| TGAAATGTTGAGGTTATGAT+TGG | - | tig0025942:17364-17383 | None:intergenic | 30.0% | |
| ATATAGTTTAGGTGCATTTG+TGG | - | tig0025942:17414-17433 | None:intergenic | 30.0% | |
| CATTGCTTTCTTCCATAAAT+GGG | - | tig0025942:17572-17591 | None:intergenic | 30.0% | |
| AAAAAAATGTAGCTAGTAGG+TGG | + | tig0025942:18328-18347 | Msa1426070:intron | 30.0% | |
| AGGCTAGTAAGAAAATCTTT+AGG | + | tig0025942:18393-18412 | Msa1426070:intron | 30.0% | |
| TAATCATCATCACTAGTGTT+AGG | - | tig0025942:18423-18442 | None:intergenic | 30.0% | |
| AGTGTGAAATAAAATCACCT+AGG | - | tig0025942:18766-18785 | None:intergenic | 30.0% | |
| !! | GATTTTATTTCACACTTCCT+AGG | + | tig0025942:18770-18789 | Msa1426070:intron | 30.0% |
| TATTCATTTGACAATTGAGC+AGG | + | tig0025942:18843-18862 | Msa1426070:intron | 30.0% | |
| ATTCATTTGACAATTGAGCA+GGG | + | tig0025942:18844-18863 | Msa1426070:intron | 30.0% | |
| GCTTCAATAATAAAACTCTG+GGG | + | tig0025942:19424-19443 | Msa1426070:intron | 30.0% | |
| CGAAAAAAAACTTGTACCTA+CGG | + | tig0025942:19504-19523 | Msa1426070:intron | 30.0% | |
| !! | AGATATTTAGTGACGGATTT+CGG | - | tig0025942:19530-19549 | None:intergenic | 30.0% |
| CGGAAATAGATATTTAGTGA+CGG | - | tig0025942:19537-19556 | None:intergenic | 30.0% | |
| CACTAAATATCTATTTCCGT+AGG | + | tig0025942:19538-19557 | Msa1426070:intron | 30.0% | |
| GTCAATTATGCATTATCCAT+AGG | + | tig0025942:19589-19608 | Msa1426070:intron | 30.0% | |
| GACAAATAGGAATTTACCTA+TGG | - | tig0025942:19608-19627 | None:intergenic | 30.0% | |
| GGTAAATTCCTATTTGTCTA+TGG | + | tig0025942:19610-19629 | Msa1426070:intron | 30.0% | |
| !!! | CTTTTTAAAGTAGTTGGATG+AGG | - | tig0025942:20059-20078 | None:intergenic | 30.0% |
| ! | CTCATCCAACTACTTTAAAA+AGG | + | tig0025942:20057-20076 | Msa1426070:intron | 30.0% |
| ! | ATGACATGTGATAATGCATT+TGG | + | tig0025942:20199-20218 | Msa1426070:intron | 30.0% |
| ! | ATCTAAAGTAGGTTCTATCT+TGG | - | tig0025942:20237-20256 | None:intergenic | 30.0% |
| AAAATAGCAACAAAGCTCTT+AGG | - | tig0025942:20371-20390 | None:intergenic | 30.0% | |
| !!! | TGCTATTTTGTCCTAATTTG+AGG | + | tig0025942:20382-20401 | Msa1426070:intron | 30.0% |
| AAAAGAAGTAGCCTCAAATT+AGG | - | tig0025942:20396-20415 | None:intergenic | 30.0% | |
| TATACGGAAGACAATTACAA+AGG | - | tig0025942:20693-20712 | None:intergenic | 30.0% | |
| ! | CTTCAAATGTTTTGCTTCAT+AGG | - | tig0025942:20768-20787 | None:intergenic | 30.0% |
| ! | TGGAAACGTTTGAAATGTTG+AGG | - | tig0025942:17374-17393 | None:intergenic | 35.0% |
| ! | TGGCAGCACATATTTGTTAA+TGG | - | tig0025942:17394-17413 | None:intergenic | 35.0% |
| TTGGAACAGAATGAAGAGAA+GGG | - | tig0025942:17454-17473 | None:intergenic | 35.0% | |
| !! | CCAAAAAATTCAGGTTGGAA+TGG | - | tig0025942:17495-17514 | None:intergenic | 35.0% |
| !!! | CCATTCCAACCTGAATTTTT+TGG | + | tig0025942:17492-17511 | Msa1426070:five_prime_UTR | 35.0% |
| GCATTGCTTTCTTCCATAAA+TGG | - | tig0025942:17573-17592 | None:intergenic | 35.0% | |
| !!! | TTTGTGATGGGTTTTTTCAC+AGG | + | tig0025942:17610-17629 | Msa1426070:CDS | 35.0% |
| !!! | GTTTTTTGGCTATGGATTCT+AGG | - | tig0025942:17772-17791 | None:intergenic | 35.0% |
| !!! | TTGTTGCTGCTGTTGTTTTT+TGG | - | tig0025942:17786-17805 | None:intergenic | 35.0% |
| ! | AGTCTTTTAGGCTTCAATTG+AGG | - | tig0025942:17832-17851 | None:intergenic | 35.0% |
| !!! | TAAGGTAGTTTTGTGCTTGT+TGG | - | tig0025942:17871-17890 | None:intergenic | 35.0% |
| TTGTTGATCAACCATTGCTT+TGG | + | tig0025942:17932-17951 | Msa1426070:CDS | 35.0% | |
| GGAAAACTGGTATCATGTAT+AGG | + | tig0025942:18004-18023 | Msa1426070:CDS | 35.0% | |
| ! | TGTTTTCAGTGAAGAGTTCA+TGG | + | tig0025942:18032-18051 | Msa1426070:CDS | 35.0% |
| ATTGAGCATCATAGACTAAG+TGG | + | tig0025942:18102-18121 | Msa1426070:CDS | 35.0% | |
| TTGAGCATCATAGACTAAGT+GGG | + | tig0025942:18103-18122 | Msa1426070:CDS | 35.0% | |
| ACTCAATATCTCTAAGCTGT+TGG | - | tig0025942:18176-18195 | None:intergenic | 35.0% | |
| !! | TTGGTGTCACTAAAATTCGA+GGG | - | tig0025942:18474-18493 | None:intergenic | 35.0% |
| !! | ATTGGTGTCACTAAAATTCG+AGG | - | tig0025942:18475-18494 | None:intergenic | 35.0% |
| CATGATATTTCACACTTCCT+AGG | + | tig0025942:18746-18765 | Msa1426070:intron | 35.0% | |
| TTTGCAAGTAATAATGCCGT+TGG | - | tig0025942:18884-18903 | None:intergenic | 35.0% | |
| ATTCAATAGCTCCATTCTCT+GGG | + | tig0025942:19021-19040 | Msa1426070:CDS | 35.0% | |
| ATCAGTTAAGGATACTTCTC+AGG | + | tig0025942:19069-19088 | Msa1426070:CDS | 35.0% | |
| TCTATCATTTACGCTCTGAT+AGG | + | tig0025942:19388-19407 | Msa1426070:intron | 35.0% | |
| ! | TCAATAATAAAACTCTGGGG+AGG | + | tig0025942:19427-19446 | Msa1426070:intron | 35.0% |
| ! | GTCTTTCAGACTTTTACCTA+CGG | - | tig0025942:19557-19576 | None:intergenic | 35.0% |
| TCCTATTTGTCTATGGGTAA+AGG | + | tig0025942:19617-19636 | Msa1426070:intron | 35.0% | |
| !! | AGTTAGGTTGGATATCTTGT+TGG | + | tig0025942:19788-19807 | Msa1426070:intron | 35.0% |
| TAAAGTAGTTGGATGAGGTT+GGG | - | tig0025942:20054-20073 | None:intergenic | 35.0% | |
| TTAAAGTAGTTGGATGAGGT+TGG | - | tig0025942:20055-20074 | None:intergenic | 35.0% | |
| CACATGTCATAGACATTATG+CGG | - | tig0025942:20189-20208 | None:intergenic | 35.0% | |
| AGGTTCTATCTTGGAGTAAA+AGG | - | tig0025942:20228-20247 | None:intergenic | 35.0% | |
| !! | TTGTCACTTTGCATTTCATG+TGG | - | tig0025942:20283-20302 | None:intergenic | 35.0% |
| !! | ATTTGAGGCTACTTCTTTTG+TGG | + | tig0025942:20397-20416 | Msa1426070:intron | 35.0% |
| CACAAACTTGATTGAGTTCT+AGG | - | tig0025942:20427-20446 | None:intergenic | 35.0% | |
| TAGAAACTAGTGCTTGGAAA+TGG | - | tig0025942:20547-20566 | None:intergenic | 35.0% | |
| AGTAGTTAGAAACTAGTGCT+TGG | - | tig0025942:20553-20572 | None:intergenic | 35.0% | |
| TATGAAAGCAACTCTTGTAC+TGG | - | tig0025942:20638-20657 | None:intergenic | 35.0% | |
| GTTGGAACAGAATGAAGAGA+AGG | - | tig0025942:17455-17474 | None:intergenic | 40.0% | |
| ! | AGAAGATGGGTTCAGTAGAA+AGG | + | tig0025942:17533-17552 | Msa1426070:exon | 40.0% |
| GTTGACATTTGAGAAGGTTG+TGG | - | tig0025942:17715-17734 | None:intergenic | 40.0% | |
| !!! | CTGCTGTTGTTTTTTGGCTA+TGG | - | tig0025942:17780-17799 | None:intergenic | 40.0% |
| TTAGGCTTCAATTGAGGTAG+TGG | - | tig0025942:17826-17845 | None:intergenic | 40.0% | |
| TCGACAACAATCCAAAGCAA+TGG | - | tig0025942:17946-17965 | None:intergenic | 40.0% | |
| CTCTGGCAATTCAGTTGATT+CGG | - | tig0025942:17977-17996 | None:intergenic | 40.0% | |
| CTGAATTGCCAGAGATATTG+AGG | + | tig0025942:17983-18002 | Msa1426070:CDS | 40.0% | |
| ! | CCAGTTTTCCTCAATATCTC+TGG | - | tig0025942:17994-18013 | None:intergenic | 40.0% |
| CCAGAGATATTGAGGAAAAC+TGG | + | tig0025942:17991-18010 | Msa1426070:CDS | 40.0% | |
| AGCAAATAGAAGGGGTAGAA+AGG | - | tig0025942:18202-18221 | None:intergenic | 40.0% | |
| ACTTGAGAAGAGTCACAAAC+TGG | - | tig0025942:18932-18951 | None:intergenic | 40.0% | |
| TGTGACTCTTCTCAAGTCAT+TGG | + | tig0025942:18935-18954 | Msa1426070:CDS | 40.0% | |
| ACTCTTCTCAAGTCATTGGA+TGG | + | tig0025942:18939-18958 | Msa1426070:CDS | 40.0% | |
| CATTCAATAGCTCCATTCTC+TGG | + | tig0025942:19020-19039 | Msa1426070:CDS | 40.0% | |
| GCCTTTACCCATAGACAAAT+AGG | - | tig0025942:19621-19640 | None:intergenic | 40.0% | |
| AAAGCTCTTAGGTAGAGTAG+AGG | - | tig0025942:20360-20379 | None:intergenic | 40.0% | |
| !! | GCAAGTAGTTCTAGAAGATG+AGG | + | tig0025942:20449-20468 | Msa1426070:CDS | 40.0% |
| ! | AGAAGATGAGGCTAAGTTGA+AGG | + | tig0025942:20461-20480 | Msa1426070:CDS | 40.0% |
| ! | GAAGATGAGGCTAAGTTGAA+GGG | + | tig0025942:20462-20481 | Msa1426070:CDS | 40.0% |
| !!! | AGCAAGATTTTGGAGCAGTA+CGG | - | tig0025942:20495-20514 | None:intergenic | 40.0% |
| ACTGCTCCAAAATCTTGCTA+TGG | + | tig0025942:20496-20515 | Msa1426070:CDS | 40.0% | |
| ! | GAAACGCCATAGCAAGATTT+TGG | - | tig0025942:20505-20524 | None:intergenic | 40.0% |
| ! | TTCACAGGTTTAGCTCCAAC+AGG | + | tig0025942:17625-17644 | Msa1426070:CDS | 45.0% |
| CAGTGAAGAGTTCATGGACT+TGG | + | tig0025942:18038-18057 | Msa1426070:CDS | 45.0% | |
| AGTGGGATTGTTCACTTTGC+TGG | + | tig0025942:18120-18139 | Msa1426070:CDS | 45.0% | |
| TGACAATTGAGCAGGGTCTT+TGG | + | tig0025942:18851-18870 | Msa1426070:intron | 45.0% | |
| GGGTCGAACTTCATCAGTTA+AGG | + | tig0025942:19057-19076 | Msa1426070:CDS | 45.0% | |
| !!! | AAGATTTTGGAGCAGTACGG+TGG | - | tig0025942:20492-20511 | None:intergenic | 45.0% |
| !!! | TTAATTTTTTTTTTTTTTGA+AGG | + | tig0025942:19829-19848 | Msa1426070:intron | 5.0% |
| TGGCTATGGATTCTAGGTGC+TGG | - | tig0025942:17766-17785 | None:intergenic | 50.0% | |
| !! | TGAGCAGGGTCTTTGGAACA+TGG | + | tig0025942:18858-18877 | Msa1426070:intron | 50.0% |
| !! | GGTCTTTGGAACATGGCCAA+CGG | + | tig0025942:18865-18884 | Msa1426070:CDS | 50.0% |
| AAGTTCGACCCCATCTCTCA+GGG | - | tig0025942:19048-19067 | None:intergenic | 50.0% | |
| TCTCTCAGGGTCCCAGAGAA+TGG | - | tig0025942:19035-19054 | None:intergenic | 55.0% | |
| !! | TTCTCTGGGACCCTGAGAGA+TGG | + | tig0025942:19035-19054 | Msa1426070:CDS | 55.0% |
| !! | TCTCTGGGACCCTGAGAGAT+GGG | + | tig0025942:19036-19055 | Msa1426070:CDS | 55.0% |
| GAAGTTCGACCCCATCTCTC+AGG | - | tig0025942:19049-19068 | None:intergenic | 55.0% | |
| GGCCTTGATGCACTTGCACA+GGG | - | tig0025942:19453-19472 | None:intergenic | 55.0% | |
| TGCAAGTGCATCAAGGCCCT+TGG | + | tig0025942:19455-19474 | Msa1426070:intron | 55.0% | |
| !!! | ATTTTGAGGCCCCGTGCCAA+GGG | - | tig0025942:19474-19493 | None:intergenic | 55.0% |
| !!! | AATTTTGAGGCCCCGTGCCA+AGG | - | tig0025942:19475-19494 | None:intergenic | 55.0% |
| !! | TAGTGACGGATTTCGGCCGT+AGG | - | tig0025942:19523-19542 | None:intergenic | 55.0% |
| TAACGGGGCCTCCGAATTGT+CGG | + | tig0025942:19721-19740 | Msa1426070:intron | 55.0% | |
| !! | CTCTGGGACCCTGAGAGATG+GGG | + | tig0025942:19037-19056 | Msa1426070:CDS | 60.0% |
| GGCCCTGTGCAAGTGCATCA+AGG | + | tig0025942:19448-19467 | Msa1426070:intron | 60.0% | |
| GGGCCTTGATGCACTTGCAC+AGG | - | tig0025942:19454-19473 | None:intergenic | 60.0% | |
| GTGCATCAAGGCCCTTGGCA+CGG | + | tig0025942:19460-19479 | Msa1426070:intron | 60.0% | |
| TGCATCAAGGCCCTTGGCAC+GGG | + | tig0025942:19461-19480 | Msa1426070:intron | 60.0% | |
| AACGGGGCCTCCGAATTGTC+GGG | + | tig0025942:19722-19741 | Msa1426070:intron | 60.0% | |
| TAGGGCCGTCCCCGACAATT+CGG | - | tig0025942:19735-19754 | None:intergenic | 60.0% | |
| GCATCAAGGCCCTTGGCACG+GGG | + | tig0025942:19462-19481 | Msa1426070:intron | 65.0% | |
| ACGGGGCCTCCGAATTGTCG+GGG | + | tig0025942:19723-19742 | Msa1426070:intron | 65.0% | |
| GGCCTCCGAATTGTCGGGGA+CGG | + | tig0025942:19727-19746 | Msa1426070:intron | 65.0% | |
| GGCCGTCCCCGACAATTCGG+AGG | - | tig0025942:19732-19751 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025942 | gene | 17299 | 20832 | 17299 | ID=Msa1426070;Name=Msa1426070 |
| tig0025942 | mRNA | 17299 | 20832 | 17299 | ID=Msa1426070-mRNA-1;Parent=Msa1426070;Name=Msa1426070-mRNA-1;_AED=0.00;_eAED=0.00;_QI=239|1|1|1|0.5|0.66|3|272|337 |
| tig0025942 | exon | 17299 | 18193 | 17299 | ID=Msa1426070-mRNA-1:exon:4657;Parent=Msa1426070-mRNA-1 |
| tig0025942 | exon | 18865 | 19090 | 18865 | ID=Msa1426070-mRNA-1:exon:4658;Parent=Msa1426070-mRNA-1 |
| tig0025942 | exon | 20429 | 20832 | 20429 | ID=Msa1426070-mRNA-1:exon:4659;Parent=Msa1426070-mRNA-1 |
| tig0025942 | five_prime_UTR | 17299 | 17537 | 17299 | ID=Msa1426070-mRNA-1:five_prime_utr;Parent=Msa1426070-mRNA-1 |
| tig0025942 | CDS | 17538 | 18193 | 17538 | ID=Msa1426070-mRNA-1:cds;Parent=Msa1426070-mRNA-1 |
| tig0025942 | CDS | 18865 | 19090 | 18865 | ID=Msa1426070-mRNA-1:cds;Parent=Msa1426070-mRNA-1 |
| tig0025942 | CDS | 20429 | 20560 | 20429 | ID=Msa1426070-mRNA-1:cds;Parent=Msa1426070-mRNA-1 |
| tig0025942 | three_prime_UTR | 20561 | 20832 | 20561 | ID=Msa1426070-mRNA-1:three_prime_utr;Parent=Msa1426070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
