AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0578920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0578920 MtrunA17_Chr4g0043971 96.837 411 13 0 1 411 1 411 0.0 824
Msa0578920 MtrunA17_Chr1g0197641 32.239 335 208 9 72 398 30 353 7.70e-50 173
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0578920 AT2G01470.1 49.492 394 184 7 9 400 11 391 2.85e-113 337
Msa0578920 AT5G50650.1 48.564 383 174 8 1 382 1 361 1.83e-110 330
Msa0578920 AT5G50550.1 48.564 383 174 8 1 382 1 361 1.83e-110 330
Msa0578920 AT3G52190.1 29.674 337 221 7 64 393 27 354 3.23e-42 153

Find 117 sgRNAs with CRISPR-Local

Find 575 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAGCTGATGGAAAGTTTC+TGG 0.216501 4_1:+83578926 Msa0578920:CDS
GTGGCGGCCCCTGCAGGGTT+TGG 0.223489 4_1:+83576561 Msa0578920:CDS
TGGGAGGTGGCGGCCCCTGC+AGG 0.245520 4_1:+83576555 Msa0578920:CDS
TGGCAAGTTGATTGTCTCTT+TGG 0.248816 4_1:+83576535 Msa0578920:CDS
AATTGTTTGGGATATCAATT+TGG 0.285256 4_1:+83581165 Msa0578920:three_prime_UTR
CAATCATGAGTAAAATTGTT+TGG 0.285270 4_1:+83581152 Msa0578920:three_prime_UTR
TTCTTCAGGTTCGAAGGGTC+TGG 0.285342 4_1:-83573090 None:intergenic
TTCATTACAAACCTTGAATC+AGG 0.290274 4_1:-83579921 None:intergenic
ATTATGGTGTTAAATTGTTA+TGG 0.295755 4_1:+83581102 Msa0578920:three_prime_UTR
TTCCCATGTTTGTGTATTCC+AGG 0.301485 4_1:-83578853 None:intergenic
TGCAAAATATATACCTGTTC+TGG 0.301923 4_1:-83578745 None:intergenic
TGGCGGCCCCTGCAGGGTTT+GGG 0.305184 4_1:+83576562 Msa0578920:CDS
CATTACAGGATGGCAGTCTA+AGG 0.306362 4_1:+83576266 Msa0578920:intron
TGCCCGAGCAACACAGAATT+AGG 0.307606 4_1:-83573306 None:intergenic
CTCTGTAGATTGTATAATTA+TGG 0.316112 4_1:+83581086 Msa0578920:three_prime_UTR
AAGGAACGCCGTATTTCTTC+AGG 0.327746 4_1:-83573104 None:intergenic
GGCAAACACGACGTACTTTC+CGG 0.330888 4_1:-83573253 None:intergenic
TTTCAATTCCTTCAACCTTC+AGG 0.340231 4_1:-83580881 None:intergenic
GGCAAGTTGATTGTCTCTTT+GGG 0.342939 4_1:+83576536 Msa0578920:CDS
TCCTTTATACTCCGTTGCTT+GGG 0.350058 4_1:+83573122 Msa0578920:CDS
AATCATGAGTAAAATTGTTT+GGG 0.352241 4_1:+83581153 Msa0578920:three_prime_UTR
CAAATAATGCCTTCTCCGTT+GGG 0.363852 4_1:-83573662 None:intergenic
TTCCTTTATACTCCGTTGCT+TGG 0.367492 4_1:+83573121 Msa0578920:CDS
ACAATTACAATATCTCCTTC+AGG 0.370620 4_1:-83579822 None:intergenic
TGGAAAAGCCAAAGTGTTGC+AGG 0.370641 4_1:+83573690 Msa0578920:CDS
GGAAAGTACGTCGTGTTTGC+CGG 0.376827 4_1:+83573255 Msa0578920:CDS
GAGACATTGAATGCACATAT+TGG 0.384246 4_1:-83578906 None:intergenic
GGCTTCTATATTCAGGGCAT+TGG 0.384344 4_1:+83580003 Msa0578920:intron
CTATATATTGCTGCCAGAAC+AGG 0.392636 4_1:+83578732 Msa0578920:CDS
GTTGTCCAACATTATCCAAC+TGG 0.393760 4_1:-83575355 None:intergenic
GCGTCAATTGCTTCCGTCTC+CGG 0.394671 4_1:-83573231 None:intergenic
CTGTTCTGGCAGCAATATAT+AGG 0.411746 4_1:-83578731 None:intergenic
GTCGTGTTTGCCGGTGGCGG+TGG 0.413598 4_1:+83573264 Msa0578920:CDS
TTCTGAGTGGTTGTACCATT+GGG 0.413763 4_1:+83581041 Msa0578920:three_prime_UTR
GGGTGAAGTGCCATTCTATA+AGG 0.419923 4_1:-83573641 None:intergenic
ACAAATAATGCCTTCTCCGT+TGG 0.423444 4_1:-83573663 None:intergenic
GGGAGGTGGCGGCCCCTGCA+GGG 0.426848 4_1:+83576556 Msa0578920:CDS
TCTTCAGGTTCGAAGGGTCT+GGG 0.434306 4_1:-83573089 None:intergenic
ACCCAAGCAACGGAGTATAA+AGG 0.435918 4_1:-83573123 None:intergenic
GGCATTGGCTTCTGTATCCA+TGG 0.443307 4_1:+83580018 Msa0578920:CDS
TTCCGAGTTGCCTTATAGAA+TGG 0.446113 4_1:+83573631 Msa0578920:CDS
ATTCCTAATTCTGTGTTGCT+CGG 0.447796 4_1:+83573303 Msa0578920:CDS
TCATAAATCTTCGCCGGAGA+CGG 0.463175 4_1:+83573218 Msa0578920:CDS
GCTTACTTCCTGAAGGTTGA+AGG 0.465391 4_1:+83580873 Msa0578920:CDS
TTCCTAATTCTGTGTTGCTC+GGG 0.466232 4_1:+83573304 Msa0578920:CDS
TTGATTGTCTCTTTGGGAGG+TGG 0.468915 4_1:+83576542 Msa0578920:CDS
ATTCTGAGTGGTTGTACCAT+TGG 0.471625 4_1:+83581040 Msa0578920:three_prime_UTR
TGTCTGTCTTGCAGTTCTGA+TGG 0.472254 4_1:+83576515 Msa0578920:intron
ATTGTAGAAATATTTACTGC+TGG 0.478308 4_1:+83580929 Msa0578920:exon
GCACATGCAGATGGTTTGAC+TGG 0.489183 4_1:+83575270 Msa0578920:intron
AAAGAAGACCTGCAACACTT+TGG 0.491375 4_1:-83573698 None:intergenic
CCGTATTTCTTCAGGTTCGA+AGG 0.492140 4_1:-83573096 None:intergenic
GAATGCTGAAATTCACAAGT+TGG 0.497117 4_1:+83575304 Msa0578920:CDS
ATATTTCAGGTGTTTAAGCT+AGG 0.498331 4_1:+83573602 Msa0578920:intron
TACGTCGTGTTTGCCGGTGG+CGG 0.499692 4_1:+83573261 Msa0578920:CDS
GCATTGGCATTCAACAATGA+TGG 0.500116 4_1:+83575383 Msa0578920:CDS
CGGGCATTTCGATGTTGCAT+CGG 0.507244 4_1:+83573323 Msa0578920:CDS
AATGCTGAAATTCACAAGTT+GGG 0.510662 4_1:+83575305 Msa0578920:CDS
AATTCACAAGTTGGGTCTGA+AGG 0.511078 4_1:+83575313 Msa0578920:CDS
AGAGAAGCTTCTCACCCAGT+TGG 0.514272 4_1:+83575340 Msa0578920:CDS
TACCCTCGCACTTGAATCCA+TGG 0.515086 4_1:-83580035 None:intergenic
CTCACCCAGTTGGATAATGT+TGG 0.517477 4_1:+83575350 Msa0578920:CDS
TTTATGATCGGCAGCATCGT+CGG 0.517957 4_1:-83573202 None:intergenic
AGAAACATCCCAAACCCTGC+AGG 0.518415 4_1:-83576570 None:intergenic
TTTAAGGAGGAGGACTGAGC+TGG 0.530683 4_1:+83580814 Msa0578920:intron
TCAAACAAAGGATGGGACTC+AGG 0.539755 4_1:+83578707 Msa0578920:CDS
ATTGTCTCTTTGGGAGGTGG+CGG 0.541675 4_1:+83576545 Msa0578920:CDS
CCTTCGAACCTGAAGAAATA+CGG 0.542571 4_1:+83573096 Msa0578920:CDS
GCGGCTATCTCCACCGCCAC+CGG 0.547245 4_1:-83573274 None:intergenic
TGTTGGACAACAATTAGCAT+TGG 0.547834 4_1:+83575367 Msa0578920:CDS
TCATTACAAACCTTGAATCA+GGG 0.548645 4_1:-83579920 None:intergenic
AGAAGGCATTATTTGTGCAA+TGG 0.551687 4_1:+83573670 Msa0578920:CDS
CGTATTTCTTCAGGTTCGAA+GGG 0.557599 4_1:-83573095 None:intergenic
GCACTTCACCCCAACGGAGA+AGG 0.558496 4_1:+83573653 Msa0578920:CDS
AATAGCTGCTTACTTCCTGA+AGG 0.563268 4_1:+83580866 Msa0578920:CDS
TTATACAATCTACAGAGCAT+TGG 0.565341 4_1:-83581080 None:intergenic
GCATTCAATGTCTCAGCTGA+TGG 0.568791 4_1:+83578915 Msa0578920:CDS
CAATGCTCATTCTACTGTGA+AGG 0.569819 4_1:+83576330 Msa0578920:CDS
GAAACATCCCAAACCCTGCA+GGG 0.570028 4_1:-83576569 None:intergenic
CACATGCAGATGGTTTGACT+GGG 0.572817 4_1:+83575271 Msa0578920:intron
GCGATTTGAGAATGGATTGT+GGG 0.575042 4_1:-83573146 None:intergenic
AAGGAGGAGGACTGAGCTGG+TGG 0.586192 4_1:+83580817 Msa0578920:intron
CATTACAAACCTTGAATCAG+GGG 0.586918 4_1:-83579919 None:intergenic
CTTCACAGTAGAATGAGCAT+TGG 0.587615 4_1:-83576329 None:intergenic
GGATTCTCTCTCTGATCCAC+CGG 0.588348 4_1:+83573344 Msa0578920:CDS
TACACTAGCTGCTGGTGGAG+AGG 0.593622 4_1:+83575409 Msa0578920:CDS
AGTAAGCAGCTATTGCAAGT+AGG 0.596054 4_1:-83580857 None:intergenic
ATTACAGGATGGCAGTCTAA+GGG 0.596584 4_1:+83576267 Msa0578920:intron
ATATGCAGCGGAACACCTGA+AGG 0.596958 4_1:+83579807 Msa0578920:intron
TGACCTGGAATACACAAACA+TGG 0.596985 4_1:+83578850 Msa0578920:CDS
AAGTACGTCGTGTTTGCCGG+TGG 0.600942 4_1:+83573258 Msa0578920:CDS
GTCGGAGGAATGATCATCAT+CGG 0.601246 4_1:-83573184 None:intergenic
AAGTTGATTGTCTCTTTGGG+AGG 0.601665 4_1:+83576539 Msa0578920:CDS
ATCCATGGATTCAAGTGCGA+GGG 0.604094 4_1:+83580033 Msa0578920:CDS
TGCCGATCATAAATCTTCGC+CGG 0.604371 4_1:+83573212 Msa0578920:CDS
GATGGTACTACACTAGCTGC+TGG 0.619769 4_1:+83575401 Msa0578920:CDS
AGCGATTTGAGAATGGATTG+TGG 0.621404 4_1:-83573147 None:intergenic
CTGATGGAAAGTTTCTGGCA+TGG 0.623936 4_1:+83578931 Msa0578920:CDS
CTCCGGCGAAGATTTATGAT+CGG 0.625230 4_1:-83573214 None:intergenic
TGCCATTCTATAAGGCAACT+CGG 0.627739 4_1:-83573633 None:intergenic
GGAATACACAAACATGGGAA+AGG 0.627776 4_1:+83578856 Msa0578920:CDS
CTAAAGCAGTTACTACGCCA+AGG 0.630301 4_1:-83579890 None:intergenic
AAATAATGCCTTCTCCGTTG+GGG 0.636673 4_1:-83573661 None:intergenic
GACCTGGAATACACAAACAT+GGG 0.637351 4_1:+83578851 Msa0578920:CDS
ATGATCGGCAGCATCGTCGG+AGG 0.640539 4_1:-83573199 None:intergenic
GGATTGTGGGACCCAAGCAA+CGG 0.641995 4_1:-83573133 None:intergenic
TTGTCCAACATTATCCAACT+GGG 0.643522 4_1:-83575354 None:intergenic
AAACATCCCAAACCCTGCAG+GGG 0.644586 4_1:-83576568 None:intergenic
GGCGGTGGAGATAGCCGCAG+TGG 0.656943 4_1:+83573279 Msa0578920:CDS
GAGACGGAAGCAATTGACGC+CGG 0.659922 4_1:+83573234 Msa0578920:CDS
TATCCATGGATTCAAGTGCG+AGG 0.661757 4_1:+83580032 Msa0578920:CDS
GAGACATTATCATATCCCAA+TGG 0.664860 4_1:-83581056 None:intergenic
AGAATGGCACTTCACCCCAA+CGG 0.669541 4_1:+83573647 Msa0578920:CDS
GGTACTACACTAGCTGCTGG+TGG 0.673466 4_1:+83575404 Msa0578920:CDS
AACCTTACTCGACTAGACGG+AGG 0.719530 4_1:+83572945 None:intergenic
GGAGGAATGATCATCATCGG+CGG 0.741993 4_1:-83573181 None:intergenic
CAGAATTAGGAATACCACTG+CGG 0.790181 4_1:-83573293 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAATTTAAGAGTTTA+AGG + chr4_1:83577963-83577982 Msa0578920:intron 10.0%
!!! ATAAGTAAATTTTTTTTTGT+AGG + chr4_1:83578024-83578043 Msa0578920:intron 10.0%
!!! TAAGTAAATTTTTTTTTGTA+GGG + chr4_1:83578025-83578044 Msa0578920:intron 10.0%
!! TTTACTTTATTATAAATGTT+GGG - chr4_1:83578498-83578517 None:intergenic 10.0%
!!! TTTTACTTTATTATAAATGT+TGG - chr4_1:83578499-83578518 None:intergenic 10.0%
!! TTATTTATTTAATATCATGT+TGG - chr4_1:83580655-83580674 None:intergenic 10.0%
!! TAAAATTATCAATGAAATAT+AGG + chr4_1:83580679-83580698 Msa0578920:intron 10.0%
!!! TTATATATTTTTATGGAATT+TGG + chr4_1:83581201-83581220 Msa0578920:three_prime_UTR 10.0%
!! AAGAAATATATAAAATGTAC+CGG - chr4_1:83573366-83573385 None:intergenic 15.0%
!! ACTATTTATATCTTATAGTT+AGG - chr4_1:83574539-83574558 None:intergenic 15.0%
!! AAACTATCAATACAATATTA+TGG - chr4_1:83574871-83574890 None:intergenic 15.0%
!! TATAGTTAGTTGTAAATATT+AGG - chr4_1:83575224-83575243 None:intergenic 15.0%
!! CTTCATTTATATGAATTTAA+AGG - chr4_1:83575444-83575463 None:intergenic 15.0%
!! TGAAGTAAAAAGATAATTTA+TGG + chr4_1:83575503-83575522 Msa0578920:intron 15.0%
!! ACAAAAATACAAATATCATA+TGG - chr4_1:83576245-83576264 None:intergenic 15.0%
!! TATTTAGTCTATTTATAAAC+AGG + chr4_1:83576788-83576807 Msa0578920:intron 15.0%
!!! TTTTTTTATGATATCCTAAA+GGG + chr4_1:83577565-83577584 Msa0578920:intron 15.0%
!! AATGCTATTAAAATTAAGTA+AGG - chr4_1:83577640-83577659 None:intergenic 15.0%
!! AAGCATAAATTAAACAAATT+TGG - chr4_1:83577712-83577731 None:intergenic 15.0%
!!! TTTTTCAACAATTTTTTTAC+AGG + chr4_1:83577743-83577762 Msa0578920:intron 15.0%
!! ATATTAAGAACGTTATTAAA+AGG + chr4_1:83577767-83577786 Msa0578920:intron 15.0%
!! AGATATAAGTAACAAAAATA+TGG - chr4_1:83577832-83577851 None:intergenic 15.0%
!!! TAAACAAAATTTATTTTAGC+AGG + chr4_1:83577991-83578010 Msa0578920:intron 15.0%
!!! AAACAAAATTTATTTTAGCA+GGG + chr4_1:83577992-83578011 Msa0578920:intron 15.0%
!! AAAGCTATTAAAATTAAGTA+AGG + chr4_1:83578054-83578073 Msa0578920:intron 15.0%
!! GTATTAATTAGAATTATGTT+TGG + chr4_1:83578356-83578375 Msa0578920:intron 15.0%
!!! TTATTGTTTTGTATAGATAA+AGG + chr4_1:83578813-83578832 Msa0578920:intron 15.0%
!! TTGATTTACAGATTTATAAA+TGG + chr4_1:83580135-83580154 Msa0578920:intron 15.0%
!! AATAAAAAATTATGAAAGTG+TGG + chr4_1:83580400-83580419 Msa0578920:intron 15.0%
!!! ATATGTTTTTTCTTGTTTTA+AGG + chr4_1:83580798-83580817 Msa0578920:intron 15.0%
!! AGTAACTTTATCAATATTTC+AGG + chr4_1:83573589-83573608 Msa0578920:intron 20.0%
!!! ACATAAAAAAGGCTATATTT+TGG - chr4_1:83574151-83574170 None:intergenic 20.0%
!!! TTTAGGATATAAGATTGAAT+TGG + chr4_1:83574328-83574347 Msa0578920:intron 20.0%
!! TGATAGTTTATACTAACAAA+TGG + chr4_1:83574882-83574901 Msa0578920:intron 20.0%
!! TTAGTTGTAAATATTAGGTT+GGG - chr4_1:83575219-83575238 None:intergenic 20.0%
!!! TTTTATTCTTTGTTCAACTA+AGG + chr4_1:83575553-83575572 Msa0578920:intron 20.0%
!! ATGTCTATTACAAATGAATT+GGG - chr4_1:83575781-83575800 None:intergenic 20.0%
!! TATGTCTATTACAAATGAAT+TGG - chr4_1:83575782-83575801 None:intergenic 20.0%
!!! CAAGTTACAATTTAATTTGT+CGG - chr4_1:83575991-83576010 None:intergenic 20.0%
!! TTTCACTTAATTGATACTAT+TGG + chr4_1:83576392-83576411 Msa0578920:intron 20.0%
!!! ATAAATCTTGTTATTTCTGA+TGG + chr4_1:83576472-83576491 Msa0578920:intron 20.0%
!!! AGAAGTTATTTTTGATTTGA+TGG + chr4_1:83576660-83576679 Msa0578920:intron 20.0%
!!! GTTTCAAAACATACTTTTAT+TGG + chr4_1:83577222-83577241 Msa0578920:intron 20.0%
!!! TTCATTTGCTTTATATTTTC+TGG + chr4_1:83577251-83577270 Msa0578920:intron 20.0%
!! TAATGATGATTGTTACTAAT+TGG + chr4_1:83577465-83577484 Msa0578920:intron 20.0%
!!! GTTTTTTTATGATATCCTAA+AGG + chr4_1:83577564-83577583 Msa0578920:intron 20.0%
!!! TTTTTTATGATATCCTAAAG+GGG + chr4_1:83577566-83577585 Msa0578920:intron 20.0%
!! TGAATACTTCTAAACATAAA+GGG - chr4_1:83578302-83578321 None:intergenic 20.0%
!! TTGAATACTTCTAAACATAA+AGG - chr4_1:83578303-83578322 None:intergenic 20.0%
!!! ATGTTTAGAAGTATTCAATA+TGG + chr4_1:83578305-83578324 Msa0578920:intron 20.0%
!!! TTAATACTACTAATTTGCTT+TGG - chr4_1:83578343-83578362 None:intergenic 20.0%
!! GTTCATGAATTCTTTATATT+TGG + chr4_1:83578398-83578417 Msa0578920:intron 20.0%
!!! TTTTGTATAGATAAAGGTTT+TGG + chr4_1:83578819-83578838 Msa0578920:intron 20.0%
!! TAAGGATTAAATCAATCTAA+GGG - chr4_1:83579025-83579044 None:intergenic 20.0%
!! TAAGGATTAAATCAATCTAA+GGG - chr4_1:83579025-83579044 None:intergenic 20.0%
!! ATGTTTATTCTTTATTCTTC+TGG + chr4_1:83579618-83579637 Msa0578920:intron 20.0%
!! ATAATTGAAGAGAAGAAAAA+TGG + chr4_1:83580061-83580080 Msa0578920:CDS 20.0%
!!! ATATACAGCAGAATTTTTTT+AGG - chr4_1:83580582-83580601 None:intergenic 20.0%
!! GATATATATATTTCCACATT+TGG + chr4_1:83580715-83580734 Msa0578920:intron 20.0%
!! AAAAACATATCAGAAACAAT+GGG - chr4_1:83580788-83580807 None:intergenic 20.0%
!! AAAAAACATATCAGAAACAA+TGG - chr4_1:83580789-83580808 None:intergenic 20.0%
!!! ATTATGGTGTTAAATTGTTA+TGG + chr4_1:83581102-83581121 Msa0578920:three_prime_UTR 20.0%
!! AATCATGAGTAAAATTGTTT+GGG + chr4_1:83581153-83581172 Msa0578920:three_prime_UTR 20.0%
!!! AATTTGGTGTAATGATTTTA+TGG + chr4_1:83581217-83581236 Msa0578920:three_prime_UTR 20.0%
!! TTTTTCTGTTTGAAAGTGAA+TGG - chr4_1:83573036-83573055 None:intergenic 25.0%
! AAATATATAAAATGTACCGG+TGG - chr4_1:83573363-83573382 None:intergenic 25.0%
! TATTTCTTACGATTCTTGTT+AGG + chr4_1:83573378-83573397 Msa0578920:intron 25.0%
! TGAAAAATGAATAATCTGTG+AGG + chr4_1:83573432-83573451 Msa0578920:intron 25.0%
! GAATTAATTGTTACAATGTG+TGG + chr4_1:83573514-83573533 Msa0578920:intron 25.0%
! AATATGCAACATTAACTATC+TGG - chr4_1:83573765-83573784 None:intergenic 25.0%
! ACAGATAAAGAAAGAAAAGT+TGG + chr4_1:83573979-83573998 Msa0578920:intron 25.0%
! CTAGAAGATCAACATAAAAA+AGG - chr4_1:83574162-83574181 None:intergenic 25.0%
!!! CTTTTTTATGTTGATCTTCT+AGG + chr4_1:83574160-83574179 Msa0578920:intron 25.0%
! ATCTTATATCCTAAAGTACA+GGG - chr4_1:83574323-83574342 None:intergenic 25.0%
! AATCTTATATCCTAAAGTAC+AGG - chr4_1:83574324-83574343 None:intergenic 25.0%
! AAAAAGTTGGATTGACAAAT+CGG + chr4_1:83574451-83574470 Msa0578920:intron 25.0%
! TCTAAAAGTAGTTCATAAGA+AGG - chr4_1:83574697-83574716 None:intergenic 25.0%
!!! TTCTTATGAACTACTTTTAG+AGG + chr4_1:83574696-83574715 Msa0578920:intron 25.0%
!!! TCTTATGAACTACTTTTAGA+GGG + chr4_1:83574697-83574716 Msa0578920:intron 25.0%
!! TTCTTTTGCAATGTTACTAT+TGG + chr4_1:83574913-83574932 Msa0578920:intron 25.0%
! GTCTTATATTTAATCGATGT+GGG - chr4_1:83574950-83574969 None:intergenic 25.0%
! CCATATTAGGTCTTTATATT+TGG - chr4_1:83575039-83575058 None:intergenic 25.0%
! CCAAATATAAAGACCTAATA+TGG + chr4_1:83575036-83575055 Msa0578920:intron 25.0%
! ATAGACTATGATACCATATT+AGG - chr4_1:83575052-83575071 None:intergenic 25.0%
! GTTAGTTGTAAATATTAGGT+TGG - chr4_1:83575220-83575239 None:intergenic 25.0%
! ATTTAACACATGCACTTAAT+AGG + chr4_1:83575697-83575716 Msa0578920:intron 25.0%
! AGTATATGAAAAGTTAATCC+AGG + chr4_1:83575742-83575761 Msa0578920:intron 25.0%
! AAAGTTAATCCAGGTTATAA+TGG + chr4_1:83575751-83575770 Msa0578920:intron 25.0%
! AGGAAATCATATTTGTACTA+TGG - chr4_1:83575881-83575900 None:intergenic 25.0%
! ACAAATCAATCATATATCGA+CGG - chr4_1:83575935-83575954 None:intergenic 25.0%
! CAATTAAAGTTGAAGCAAAA+TGG - chr4_1:83576065-83576084 None:intergenic 25.0%
!!! AGGATTTTTTTTCTCTCTAT+AGG + chr4_1:83576125-83576144 Msa0578920:intron 25.0%
!!! TTTGTATTTTTGTGCATTAC+AGG + chr4_1:83576252-83576271 Msa0578920:intron 25.0%
!! CTTTTCCTTGAAGATTAATT+TGG + chr4_1:83576708-83576727 Msa0578920:intron 25.0%
!!! GATTAATTTGGCTTGAAATT+TGG + chr4_1:83576720-83576739 Msa0578920:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG + chr4_1:83576881-83576900 Msa0578920:intron 25.0%
!! TTTTCTAATGGTTTCTCTAA+TGG - chr4_1:83577016-83577035 None:intergenic 25.0%
! AACCATTAGAAAAGATTTAG+AGG + chr4_1:83577023-83577042 Msa0578920:intron 25.0%
! GTTCTATCAAAAACCATATT+TGG - chr4_1:83577063-83577082 None:intergenic 25.0%
! AGATAGATGACTTAATGTTA+TGG + chr4_1:83577310-83577329 Msa0578920:intron 25.0%
! CAAATTTAATCAGTTGAACT+GGG - chr4_1:83577514-83577533 None:intergenic 25.0%
! AAAACATAATTAACCCCTTT+AGG - chr4_1:83577582-83577601 None:intergenic 25.0%
!! AAAGGGGTTAATTATGTTTT+TGG + chr4_1:83577582-83577601 Msa0578920:intron 25.0%
! AAACAAATTTGGATTGAGTA+AGG - chr4_1:83577701-83577720 None:intergenic 25.0%
!! GATAGGGTTAAATATGTTTT+TGG - chr4_1:83578112-83578131 None:intergenic 25.0%
!!! TTTTAGGTTACTTTAGGATA+GGG - chr4_1:83578128-83578147 None:intergenic 25.0%
!!! TTTTTAGGTTACTTTAGGAT+AGG - chr4_1:83578129-83578148 None:intergenic 25.0%
! TATCCTAAAGTAACCTAAAA+AGG + chr4_1:83578128-83578147 Msa0578920:intron 25.0%
!!! ATACCTTTTTAGGTTACTTT+AGG - chr4_1:83578134-83578153 None:intergenic 25.0%
! TAAAGAATTCATGAACATGT+TGG - chr4_1:83578394-83578413 None:intergenic 25.0%
!! TCTTTCTTTTAACATCTAGT+TGG + chr4_1:83578519-83578538 Msa0578920:intron 25.0%
! AATCTAAGGGTCAATAATTA+GGG - chr4_1:83579012-83579031 None:intergenic 25.0%
! GTAAGGATTAAATCAATCTA+AGG - chr4_1:83579026-83579045 None:intergenic 25.0%
! AAAAAATCTAGCAATGTGTA+GGG - chr4_1:83579063-83579082 None:intergenic 25.0%
! AAAAAAATCTAGCAATGTGT+AGG - chr4_1:83579064-83579083 None:intergenic 25.0%
! GATGCAATATTTAGATCTAT+AGG - chr4_1:83579147-83579166 None:intergenic 25.0%
! AATCTAAGGGTCAATAATTA+GGG - chr4_1:83579012-83579031 None:intergenic 25.0%
! GTAAGGATTAAATCAATCTA+AGG - chr4_1:83579026-83579045 None:intergenic 25.0%
! AAAAAATCTTGCAATGTGTA+GGG - chr4_1:83579301-83579320 None:intergenic 25.0%
! AAAAAAATCTTGCAATGTGT+AGG - chr4_1:83579302-83579321 None:intergenic 25.0%
! AATGTAAACAGAAAAACTGT+CGG - chr4_1:83579118-83579137 None:intergenic 25.0%
! GATGCAATATTTAGATCTAT+AGG - chr4_1:83579147-83579166 None:intergenic 25.0%
! GGACAATTATTATTCACTAT+TGG - chr4_1:83579554-83579573 None:intergenic 25.0%
! GTAGCTTAAAAAAAAGACAA+TGG - chr4_1:83579658-83579677 None:intergenic 25.0%
!!! GAAACTTACATCTTTTGTTT+TGG + chr4_1:83579777-83579796 Msa0578920:intron 25.0%
! GATTCAGACAATGATAAAAA+AGG + chr4_1:83579863-83579882 Msa0578920:CDS 25.0%
!!! AGGTATTTTAGTCATAGTTT+TGG + chr4_1:83579982-83580001 Msa0578920:intron 25.0%
! GTATTTAAAAGGATTCCATA+GGG + chr4_1:83580249-83580268 Msa0578920:intron 25.0%
!!! TTCCTTATTTTTCTATCCAT+TGG + chr4_1:83580284-83580303 Msa0578920:intron 25.0%
! GAAGTAGCTTAAGTAAAATA+CGG + chr4_1:83580347-83580366 Msa0578920:intron 25.0%
! AAAACATATCAGAAACAATG+GGG - chr4_1:83580787-83580806 None:intergenic 25.0%
!!! TGTTTTTTCTTGTTTTAAGG+AGG + chr4_1:83580801-83580820 Msa0578920:intron 25.0%
! ATTGTAGAAATATTTACTGC+TGG + chr4_1:83580929-83580948 Msa0578920:exon 25.0%
!!! TTTGAAGCATTTCCATTTTT+GGG + chr4_1:83580983-83581002 Msa0578920:three_prime_UTR 25.0%
! CTCTGTAGATTGTATAATTA+TGG + chr4_1:83581086-83581105 Msa0578920:three_prime_UTR 25.0%
! CAATCATGAGTAAAATTGTT+TGG + chr4_1:83581152-83581171 Msa0578920:three_prime_UTR 25.0%
!! AATTGTTTGGGATATCAATT+TGG + chr4_1:83581165-83581184 Msa0578920:three_prime_UTR 25.0%
! ATATTTCAGGTGTTTAAGCT+AGG + chr4_1:83573602-83573621 Msa0578920:intron 30.0%
! TATCTGTGTTTCTGATAACT+TGG - chr4_1:83573966-83573985 None:intergenic 30.0%
!! CATGGATTTTATTTCTCTGT+TGG - chr4_1:83574045-83574064 None:intergenic 30.0%
! TTTATGTTGATCTTCTAGGA+TGG + chr4_1:83574164-83574183 Msa0578920:intron 30.0%
!! TTATGTTGATCTTCTAGGAT+GGG + chr4_1:83574165-83574184 Msa0578920:intron 30.0%
AGTTCTATAACACTATCACT+AGG + chr4_1:83574269-83574288 Msa0578920:intron 30.0%
ACATCTTACAATACACACTA+CGG - chr4_1:83574398-83574417 None:intergenic 30.0%
TCGCTGTGTTTATTTATCAA+AGG + chr4_1:83574568-83574587 Msa0578920:intron 30.0%
!!! AAAGGCAGTTTTATTGTTGA+CGG + chr4_1:83574586-83574605 Msa0578920:intron 30.0%
AGAAGGAAAAGAAAAGTAGA+AGG - chr4_1:83574680-83574699 None:intergenic 30.0%
AGGAAATACAATGAGTTAGA+AGG + chr4_1:83574819-83574838 Msa0578920:intron 30.0%
! GGTCTTATATTTAATCGATG+TGG - chr4_1:83574951-83574970 None:intergenic 30.0%
CTAACTCATCCTTACAAAAT+TGG - chr4_1:83575015-83575034 None:intergenic 30.0%
TGAGTAGAGTTTATAAAGAG+TGG + chr4_1:83575151-83575170 Msa0578920:intron 30.0%
CTAACTCATCCTTACAAAAA+TGG - chr4_1:83575195-83575214 None:intergenic 30.0%
! CATTTTTGTAAGGATGAGTT+AGG + chr4_1:83575193-83575212 Msa0578920:intron 30.0%
AATGCTGAAATTCACAAGTT+GGG + chr4_1:83575305-83575324 Msa0578920:CDS 30.0%
AAGAAGATTCTGATGTAAGT+AGG + chr4_1:83575655-83575674 Msa0578920:intron 30.0%
! TTGTAACTTGTAGCTTCAAA+AGG + chr4_1:83576001-83576020 Msa0578920:intron 30.0%
AAATGGAACAGCAACATAAA+AGG - chr4_1:83576048-83576067 None:intergenic 30.0%
TTGCTTCAACTTTAATTGTG+TGG + chr4_1:83576067-83576086 Msa0578920:intron 30.0%
!! TATTTTTGTGCATTACAGGA+TGG + chr4_1:83576256-83576275 Msa0578920:intron 30.0%
! TTGAGAATATTTTCCATGCT+AGG - chr4_1:83576304-83576323 None:intergenic 30.0%
ATTGGACTTAATAATTCCCA+AGG + chr4_1:83576410-83576429 Msa0578920:intron 30.0%
!! CTCAACTTTTTCTTTTCCTT+GGG - chr4_1:83576429-83576448 None:intergenic 30.0%
!! TCTCAACTTTTTCTTTTCCT+TGG - chr4_1:83576430-83576449 None:intergenic 30.0%
GGAAAAGAAAAAGTTGAGAA+AGG + chr4_1:83576431-83576450 Msa0578920:intron 30.0%
TGAGAAAGGATAATAGATAG+AGG + chr4_1:83576445-83576464 Msa0578920:intron 30.0%
!! TTGTTATTTCTGATGGATTG+TGG + chr4_1:83576479-83576498 Msa0578920:intron 30.0%
AATAACTTCTTACACTAGTG+AGG - chr4_1:83576650-83576669 None:intergenic 30.0%
TCAAGCCAAATTAATCTTCA+AGG - chr4_1:83576716-83576735 None:intergenic 30.0%
! TCTACCAACTTTTCTACTAT+AGG - chr4_1:83576877-83576896 None:intergenic 30.0%
TTGATCTACTCTTCTTACAA+CGG - chr4_1:83576947-83576966 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG + chr4_1:83576948-83576967 Msa0578920:intron 30.0%
! GTTTCTCTAATGGTTTTCTT+AGG - chr4_1:83577006-83577025 None:intergenic 30.0%
! GACCTCTAAATCTTTTCTAA+TGG - chr4_1:83577028-83577047 None:intergenic 30.0%
! TGGTTTTTGATAGAACACTA+TGG + chr4_1:83577067-83577086 Msa0578920:intron 30.0%
CTATCTATGAAAGAACATGT+AGG - chr4_1:83577296-83577315 None:intergenic 30.0%
TGCAAAATGAGTCAAGTTTA+GGG - chr4_1:83577435-83577454 None:intergenic 30.0%
ATGCAAAATGAGTCAAGTTT+AGG - chr4_1:83577436-83577455 None:intergenic 30.0%
GCAAATTTAATCAGTTGAAC+TGG - chr4_1:83577515-83577534 None:intergenic 30.0%
GTTCAACTGATTAAATTTGC+TGG + chr4_1:83577515-83577534 Msa0578920:intron 30.0%
! TACAAGGTTGCAATTTTGTA+GGG - chr4_1:83577609-83577628 None:intergenic 30.0%
! TTACAAGGTTGCAATTTTGT+AGG - chr4_1:83577610-83577629 None:intergenic 30.0%
AAGTAAGGACTAAACTTACA+AGG - chr4_1:83577625-83577644 None:intergenic 30.0%
!!! GAGTGCAGAAATTTTTTGTA+GGG - chr4_1:83577669-83577688 None:intergenic 30.0%
!!! TGAGTGCAGAAATTTTTTGT+AGG - chr4_1:83577670-83577689 None:intergenic 30.0%
!!! TTTTGCGATATTTTTTTCGC+AGG - chr4_1:83577794-83577813 None:intergenic 30.0%
! CAAGTTTAGAACACTATGAA+AGG - chr4_1:83577929-83577948 None:intergenic 30.0%
AAGTAAGGACTAAACTTAGA+AGG + chr4_1:83578069-83578088 Msa0578920:intron 30.0%
! TTAGAAGGTCGCAATTTTAT+AGG + chr4_1:83578084-83578103 Msa0578920:intron 30.0%
! TAGAAGGTCGCAATTTTATA+GGG + chr4_1:83578085-83578104 Msa0578920:intron 30.0%
! GTAACCTAAAAAGGTATAGA+AGG + chr4_1:83578137-83578156 Msa0578920:intron 30.0%
! TTCACCTTCTATACCTTTTT+AGG - chr4_1:83578144-83578163 None:intergenic 30.0%
! AAAAGGTATAGAAGGTGAAT+TGG + chr4_1:83578145-83578164 Msa0578920:intron 30.0%
!! GTTGTTGGCTCTAAAATATT+TGG - chr4_1:83578218-83578237 None:intergenic 30.0%
ATACTTCAACGTGAATGTTT+AGG - chr4_1:83578432-83578451 None:intergenic 30.0%
AAACATTCACGTTGAAGTAT+TGG + chr4_1:83578432-83578451 Msa0578920:intron 30.0%
! AACATTCACGTTGAAGTATT+GGG + chr4_1:83578433-83578452 Msa0578920:intron 30.0%
GAAAAAATTCTTACTGCCTT+GGG + chr4_1:83578541-83578560 Msa0578920:intron 30.0%
AAAACATGGAAATCATATCG+AGG - chr4_1:83578586-83578605 None:intergenic 30.0%
! TTGCAGATTTTCTCAAACAA+AGG + chr4_1:83578695-83578714 Msa0578920:CDS 30.0%
! AGATTTTCTCAAACAAAGGA+TGG + chr4_1:83578699-83578718 Msa0578920:CDS 30.0%
! GATTTTCTCAAACAAAGGAT+GGG + chr4_1:83578700-83578719 Msa0578920:CDS 30.0%
TGCAAAATATATACCTGTTC+TGG - chr4_1:83578748-83578767 None:intergenic 30.0%
CATGGTACATATTTAGACTT+TGG + chr4_1:83578949-83578968 Msa0578920:intron 30.0%
TACATATTTAGACTTTGGCT+CGG + chr4_1:83578954-83578973 Msa0578920:intron 30.0%
CAATCTAAGGGTCAATAATT+AGG - chr4_1:83579013-83579032 None:intergenic 30.0%
GGGTACATAATATCATTGTA+AGG - chr4_1:83579043-83579062 None:intergenic 30.0%
CAATCTAAGGGTCAATAATT+AGG - chr4_1:83579013-83579032 None:intergenic 30.0%
GGGTACATAATATCATTGTA+AGG - chr4_1:83579043-83579062 None:intergenic 30.0%
! AGAGAGTTGTTTAGAGATTT+TGG + chr4_1:83579479-83579498 Msa0578920:intron 30.0%
! GAGAGTTGTTTAGAGATTTT+GGG + chr4_1:83579480-83579499 Msa0578920:intron 30.0%
!! TAAACATGTAGCTGTTTCTA+TGG - chr4_1:83579605-83579624 None:intergenic 30.0%
! AAGTGATGACTTAACTTTTG+TGG + chr4_1:83579721-83579740 Msa0578920:intron 30.0%
!!! ACTTACATCTTTTGTTTTGG+TGG + chr4_1:83579780-83579799 Msa0578920:intron 30.0%
ACAATTACAATATCTCCTTC+AGG - chr4_1:83579825-83579844 None:intergenic 30.0%
TCATTACAAACCTTGAATCA+GGG - chr4_1:83579923-83579942 None:intergenic 30.0%
TTCATTACAAACCTTGAATC+AGG - chr4_1:83579924-83579943 None:intergenic 30.0%
!!! TAGTTTTGGCTTCTATATTC+AGG + chr4_1:83579996-83580015 Msa0578920:intron 30.0%
!!! AGTTTTGGCTTCTATATTCA+GGG + chr4_1:83579997-83580016 Msa0578920:intron 30.0%
TGTAAATCAAGAACATGTGT+TGG - chr4_1:83580125-83580144 None:intergenic 30.0%
GATAGGAAAAAAGGATTACA+TGG - chr4_1:83580181-83580200 None:intergenic 30.0%
TATTAAATCACCAGACTGAT+AGG - chr4_1:83580198-83580217 None:intergenic 30.0%
GGTATTTAAAAGGATTCCAT+AGG + chr4_1:83580248-83580267 Msa0578920:intron 30.0%
CTCCAATGGATAGAAAAATA+AGG - chr4_1:83580289-83580308 None:intergenic 30.0%
!! CTTATTTTTCTATCCATTGG+AGG + chr4_1:83580287-83580306 Msa0578920:intron 30.0%
TAAGTAAAATACGGTAGCAT+TGG + chr4_1:83580356-83580375 Msa0578920:intron 30.0%
TTTCATACACTACTACCAAA+TGG - chr4_1:83580446-83580465 None:intergenic 30.0%
AACAGTCTAATACTAACATC+AGG - chr4_1:83580518-83580537 None:intergenic 30.0%
!! AATGAGTCAACTTTTTCTGT+TGG + chr4_1:83580604-83580623 Msa0578920:intron 30.0%
!!! TTTTTCTTGTTTTAAGGAGG+AGG + chr4_1:83580804-83580823 Msa0578920:intron 30.0%
CAAAAATGGAAATGCTTCAA+AGG - chr4_1:83580984-83581003 None:intergenic 30.0%
!!! CTTTGAAGCATTTCCATTTT+TGG + chr4_1:83580982-83581001 Msa0578920:three_prime_UTR 30.0%
!! TTGAAGCATTTCCATTTTTG+GGG + chr4_1:83580984-83581003 Msa0578920:three_prime_UTR 30.0%
! TGTATTTTCATCATTCTGAG+TGG + chr4_1:83581028-83581047 Msa0578920:three_prime_UTR 30.0%
TTATACAATCTACAGAGCAT+TGG - chr4_1:83581083-83581102 None:intergenic 30.0%
! AAACTTTTCAAACGCGAGAA+TGG + chr4_1:83573053-83573072 Msa0578920:exon 35.0%
! AACTTTTCAAACGCGAGAAT+GGG + chr4_1:83573054-83573073 Msa0578920:exon 35.0%
!!! GTTTTGAAGCGATTTGAGAA+TGG - chr4_1:83573157-83573176 None:intergenic 35.0%
! ATTCCTAATTCTGTGTTGCT+CGG + chr4_1:83573303-83573322 Msa0578920:CDS 35.0%
ATCTGTGAGGTTAGATGAAT+TGG + chr4_1:83573445-83573464 Msa0578920:intron 35.0%
AATTGGATCTGAGCTTGATT+AGG + chr4_1:83573462-83573481 Msa0578920:intron 35.0%
TGTGGAATCTGTTCTACATA+AGG + chr4_1:83573532-83573551 Msa0578920:intron 35.0%
!! AGAAGGCATTATTTGTGCAA+TGG + chr4_1:83573670-83573689 Msa0578920:CDS 35.0%
!! TATTTTGAATGAGTGAAGCC+AGG + chr4_1:83573781-83573800 Msa0578920:intron 35.0%
GTGTGTGTTTATTCGAGTAT+GGG - chr4_1:83573837-83573856 None:intergenic 35.0%
TGTGTGTGTTTATTCGAGTA+TGG - chr4_1:83573838-83573857 None:intergenic 35.0%
CAATTCTGTTCAAACTAGTC+TGG - chr4_1:83573924-83573943 None:intergenic 35.0%
AAGTTGGATCACGAATTCAA+TGG + chr4_1:83573995-83574014 Msa0578920:intron 35.0%
GTATGTTGAAGAACTTCATG+AGG + chr4_1:83574103-83574122 Msa0578920:intron 35.0%
TATACTTTATTAGCTGCACG+TGG + chr4_1:83574225-83574244 Msa0578920:intron 35.0%
GTGTTATAGAACTAAGTGAC+TGG - chr4_1:83574262-83574281 None:intergenic 35.0%
TATCTTCTACCCTGTACTTT+AGG + chr4_1:83574311-83574330 Msa0578920:intron 35.0%
TAAATACCAGGCAGTCTATT+TGG - chr4_1:83574365-83574384 None:intergenic 35.0%
GGTTGGAATTACTAAATACC+AGG - chr4_1:83574377-83574396 None:intergenic 35.0%
!! AATCCAACTTTTTCCAATGC+TGG - chr4_1:83574444-83574463 None:intergenic 35.0%
TAGATTAGATCGCTGATAAC+TGG - chr4_1:83574499-83574518 None:intergenic 35.0%
!! ATGAACTACTTTTAGAGGGT+TGG + chr4_1:83574701-83574720 Msa0578920:intron 35.0%
CCACTAGCTAAATGAAAGTA+CGG + chr4_1:83574779-83574798 Msa0578920:intron 35.0%
! CACTAGCTAAATGAAAGTAC+GGG + chr4_1:83574780-83574799 Msa0578920:intron 35.0%
AATGAGTTAGAAGGCAGTTA+AGG + chr4_1:83574828-83574847 Msa0578920:intron 35.0%
TATTTAATCGATGTGGGAGT+TGG - chr4_1:83574944-83574963 None:intergenic 35.0%
TGACTAGAGTTTAGAAAGAG+CGG + chr4_1:83574971-83574990 Msa0578920:intron 35.0%
!! AAAATTGGCTTGTAAGGTGA+GGG - chr4_1:83575000-83575019 None:intergenic 35.0%
!! CCTTACAAAATTGGCTTGTA+AGG - chr4_1:83575006-83575025 None:intergenic 35.0%
! CCTTACAAGCCAATTTTGTA+AGG + chr4_1:83575003-83575022 Msa0578920:intron 35.0%
! GGTATCATAGTCTATCGATT+TGG + chr4_1:83575057-83575076 Msa0578920:intron 35.0%
CATGCGTGTATATAAATGGT+GGG - chr4_1:83575086-83575105 None:intergenic 35.0%
TCATGCGTGTATATAAATGG+TGG - chr4_1:83575087-83575106 None:intergenic 35.0%
GCTTCATGCGTGTATATAAA+TGG - chr4_1:83575090-83575109 None:intergenic 35.0%
! AAAAATGGCTTGTAAGGTGA+GGG - chr4_1:83575180-83575199 None:intergenic 35.0%
! CCTTACAAAAATGGCTTGTA+AGG - chr4_1:83575186-83575205 None:intergenic 35.0%
!!! CCTTACAAGCCATTTTTGTA+AGG + chr4_1:83575183-83575202 Msa0578920:intron 35.0%
GAATGCTGAAATTCACAAGT+TGG + chr4_1:83575304-83575323 Msa0578920:CDS 35.0%
TTGTCCAACATTATCCAACT+GGG - chr4_1:83575357-83575376 None:intergenic 35.0%
TGTTGGACAACAATTAGCAT+TGG + chr4_1:83575367-83575386 Msa0578920:CDS 35.0%
GAAGGACGAAAAAAATAGCT+TGG - chr4_1:83575603-83575622 None:intergenic 35.0%
TGAAGATTCCACATTCGTAA+CGG - chr4_1:83575633-83575652 None:intergenic 35.0%
AAGTAGGTAGTAGTATCACA+AGG + chr4_1:83575671-83575690 Msa0578920:intron 35.0%
AACCAAAGTATATTCCCACT+AGG - chr4_1:83575833-83575852 None:intergenic 35.0%
! TTCTGAAGATTCAGCCTAAA+TGG + chr4_1:83575958-83575977 Msa0578920:intron 35.0%
TCTGAAGATTCAGCCTAAAT+GGG + chr4_1:83575959-83575978 Msa0578920:intron 35.0%
CCTCAAGCAAGAAAAACAAA+AGG - chr4_1:83576108-83576127 None:intergenic 35.0%
!!! CCTTTTGTTTTTCTTGCTTG+AGG + chr4_1:83576105-83576124 Msa0578920:intron 35.0%
ATAGGATAGTAATTGCACCA+TGG + chr4_1:83576143-83576162 Msa0578920:intron 35.0%
!!! ACTGTAATTTTGAAACGCCA+TGG - chr4_1:83576163-83576182 None:intergenic 35.0%
AGCACCTATAGTAGAAAAGT+TGG + chr4_1:83576870-83576889 Msa0578920:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG + chr4_1:83576890-83576909 Msa0578920:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG + chr4_1:83576895-83576914 Msa0578920:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG + chr4_1:83576951-83576970 Msa0578920:intron 35.0%
AGATTTAGAGGTCAATGAGT+TGG + chr4_1:83577035-83577054 Msa0578920:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG + chr4_1:83577047-83577066 Msa0578920:intron 35.0%
! TAGTAGATGACATGTTGACT+TGG + chr4_1:83577359-83577378 Msa0578920:intron 35.0%
!! TTAAATTTGCTGGTCTACTC+TGG + chr4_1:83577525-83577544 Msa0578920:intron 35.0%
!! GAGTTGATGGGTGAAATAAA+GGG + chr4_1:83578176-83578195 Msa0578920:intron 35.0%
!! AGTTGATGGGTGAAATAAAG+GGG + chr4_1:83578177-83578196 Msa0578920:intron 35.0%
ATATGCGAAATATGCAGTCA+GGG - chr4_1:83578267-83578286 None:intergenic 35.0%
AATATGCGAAATATGCAGTC+AGG - chr4_1:83578268-83578287 None:intergenic 35.0%
GGAAAAAATTCTTACTGCCT+TGG + chr4_1:83578540-83578559 Msa0578920:intron 35.0%
! AATCAACAGCACTGAAAACA+TGG - chr4_1:83578600-83578619 None:intergenic 35.0%
GAGACATTGAATGCACATAT+TGG - chr4_1:83578909-83578928 None:intergenic 35.0%
! AGTTGTTTAGAGATTTTGGG+AGG + chr4_1:83579483-83579502 Msa0578920:intron 35.0%
TCTGTAAAAATGCACTCTTG+AGG - chr4_1:83579759-83579778 None:intergenic 35.0%
ATGATAAAAAAGGCTCACCT+TGG + chr4_1:83579873-83579892 Msa0578920:CDS 35.0%
CATTACAAACCTTGAATCAG+GGG - chr4_1:83579922-83579941 None:intergenic 35.0%
ACTGTTTATGCTCTGTTTGA+AGG + chr4_1:83579962-83579981 Msa0578920:intron 35.0%
!!! ATCCTTTTTTCCTATCAGTC+TGG + chr4_1:83580185-83580204 Msa0578920:intron 35.0%
TATAAATCATCACCACGTTC+AGG - chr4_1:83580471-83580490 None:intergenic 35.0%
AGCATGTCTGTCTTTATAGA+TGG + chr4_1:83580552-83580571 Msa0578920:intron 35.0%
ATCGATGAAACATCCAAATG+TGG - chr4_1:83580731-83580750 None:intergenic 35.0%
! TTCATCGATTGTGTATCAAG+TGG + chr4_1:83580742-83580761 Msa0578920:intron 35.0%
TTTCAATTCCTTCAACCTTC+AGG - chr4_1:83580884-83580903 None:intergenic 35.0%
!! TGAAGCATTTCCATTTTTGG+GGG + chr4_1:83580985-83581004 Msa0578920:three_prime_UTR 35.0%
GAGACATTATCATATCCCAA+TGG - chr4_1:83581059-83581078 None:intergenic 35.0%
! ACTTTTCAAACGCGAGAATG+GGG + chr4_1:83573055-83573074 Msa0578920:exon 40.0%
! CGTATTTCTTCAGGTTCGAA+GGG - chr4_1:83573098-83573117 None:intergenic 40.0%
CCTTCGAACCTGAAGAAATA+CGG + chr4_1:83573096-83573115 Msa0578920:CDS 40.0%
TTCCTTTATACTCCGTTGCT+TGG + chr4_1:83573121-83573140 Msa0578920:CDS 40.0%
TCCTTTATACTCCGTTGCTT+GGG + chr4_1:83573122-83573141 Msa0578920:CDS 40.0%
!! GCGATTTGAGAATGGATTGT+GGG - chr4_1:83573149-83573168 None:intergenic 40.0%
!! AGCGATTTGAGAATGGATTG+TGG - chr4_1:83573150-83573169 None:intergenic 40.0%
CAGAATTAGGAATACCACTG+CGG - chr4_1:83573296-83573315 None:intergenic 40.0%
! TTCCTAATTCTGTGTTGCTC+GGG + chr4_1:83573304-83573323 Msa0578920:CDS 40.0%
TTCCGAGTTGCCTTATAGAA+TGG + chr4_1:83573631-83573650 Msa0578920:CDS 40.0%
TGCCATTCTATAAGGCAACT+CGG - chr4_1:83573636-83573655 None:intergenic 40.0%
AAATAATGCCTTCTCCGTTG+GGG - chr4_1:83573664-83573683 None:intergenic 40.0%
CAAATAATGCCTTCTCCGTT+GGG - chr4_1:83573665-83573684 None:intergenic 40.0%
ACAAATAATGCCTTCTCCGT+TGG - chr4_1:83573666-83573685 None:intergenic 40.0%
AAAGAAGACCTGCAACACTT+TGG - chr4_1:83573701-83573720 None:intergenic 40.0%
CCAATAGCGAAAAAAATGCC+TGG - chr4_1:83573802-83573821 None:intergenic 40.0%
!!! CCAGGCATTTTTTTCGCTAT+TGG + chr4_1:83573799-83573818 Msa0578920:intron 40.0%
!!! TTTTTTCGCTATTGGCCTAG+TGG + chr4_1:83573807-83573826 Msa0578920:intron 40.0%
GTGTTTATTCGAGTATGGGT+AGG - chr4_1:83573833-83573852 None:intergenic 40.0%
TCGAATAAACACACACACAG+AGG + chr4_1:83573841-83573860 Msa0578920:intron 40.0%
AATAAACACACACACAGAGG+AGG + chr4_1:83573844-83573863 Msa0578920:intron 40.0%
ATAAACACACACACAGAGGA+GGG + chr4_1:83573845-83573864 Msa0578920:intron 40.0%
GTGGTTACATCCTAATGGTT+TGG - chr4_1:83573888-83573907 None:intergenic 40.0%
AGACAGCTACTCATACTTCA+TGG - chr4_1:83574063-83574082 None:intergenic 40.0%
AGTAGCTGTCTAGTATGTTG+AGG + chr4_1:83574072-83574091 Msa0578920:intron 40.0%
GATAAACCAAATAGACTGCC+TGG + chr4_1:83574356-83574375 Msa0578920:intron 40.0%
CTTACAATACACACTACGGT+TGG - chr4_1:83574394-83574413 None:intergenic 40.0%
!! GATTTTGATCTAGCCAGCAT+TGG + chr4_1:83574428-83574447 Msa0578920:intron 40.0%
! TAGCCAGCATTGGAAAAAGT+TGG + chr4_1:83574438-83574457 Msa0578920:intron 40.0%
GCAAGCAATGTTCTTCAATG+TGG + chr4_1:83574631-83574650 Msa0578920:intron 40.0%
!! CATGTTCTGGGAATTTACAG+TGG - chr4_1:83574748-83574767 None:intergenic 40.0%
CCGTACTTTCATTTAGCTAG+TGG - chr4_1:83574782-83574801 None:intergenic 40.0%
GCTCTTTCTAAACTCTAGTC+AGG - chr4_1:83574972-83574991 None:intergenic 40.0%
!! AAATTGGCTTGTAAGGTGAG+GGG - chr4_1:83574999-83575018 None:intergenic 40.0%
!! CAAAATTGGCTTGTAAGGTG+AGG - chr4_1:83575001-83575020 None:intergenic 40.0%
! AAAATGGCTTGTAAGGTGAG+GGG - chr4_1:83575179-83575198 None:intergenic 40.0%
! CAAAAATGGCTTGTAAGGTG+AGG - chr4_1:83575181-83575200 None:intergenic 40.0%
! AATTCACAAGTTGGGTCTGA+AGG + chr4_1:83575313-83575332 Msa0578920:CDS 40.0%
GTTGTCCAACATTATCCAAC+TGG - chr4_1:83575358-83575377 None:intergenic 40.0%
! GCATTGGCATTCAACAATGA+TGG + chr4_1:83575383-83575402 Msa0578920:CDS 40.0%
ATTCGTAACGGTTTGACTGA+AGG - chr4_1:83575621-83575640 None:intergenic 40.0%
TTGGGCTTACCATTATAACC+TGG - chr4_1:83575763-83575782 None:intergenic 40.0%
GGGACAAACAAATGGTTACA+CGG - chr4_1:83575806-83575825 None:intergenic 40.0%
AGTATATTCCCACTAGGTCA+GGG - chr4_1:83575827-83575846 None:intergenic 40.0%
AAGTATATTCCCACTAGGTC+AGG - chr4_1:83575828-83575847 None:intergenic 40.0%
GACCTAGTGGGAATATACTT+TGG + chr4_1:83575828-83575847 Msa0578920:intron 40.0%
GGTTCGTGTTAACAGATACA+AGG - chr4_1:83575901-83575920 None:intergenic 40.0%
! ATATCGACGGCAATGTTTTC+AGG - chr4_1:83575922-83575941 None:intergenic 40.0%
ATTACAGGATGGCAGTCTAA+GGG + chr4_1:83576267-83576286 Msa0578920:intron 40.0%
CTTCACAGTAGAATGAGCAT+TGG - chr4_1:83576332-83576351 None:intergenic 40.0%
CAATGCTCATTCTACTGTGA+AGG + chr4_1:83576330-83576349 Msa0578920:CDS 40.0%
! CTGTGAAGGACTTGCATTTT+AGG + chr4_1:83576344-83576363 Msa0578920:CDS 40.0%
!! TGGCAAGTTGATTGTCTCTT+TGG + chr4_1:83576535-83576554 Msa0578920:CDS 40.0%
!! GGCAAGTTGATTGTCTCTTT+GGG + chr4_1:83576536-83576555 Msa0578920:CDS 40.0%
! AAGTTGATTGTCTCTTTGGG+AGG + chr4_1:83576539-83576558 Msa0578920:CDS 40.0%
TAGACTTGACTAGACAGGAT+AGG + chr4_1:83576812-83576831 Msa0578920:intron 40.0%
TGACTAGACAGGATAGGATT+AGG + chr4_1:83576818-83576837 Msa0578920:intron 40.0%
TCTTCTTACAACGGCATCTA+CGG - chr4_1:83576938-83576957 None:intergenic 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + chr4_1:83576976-83576995 Msa0578920:intron 40.0%
!! TAGATGACATGTTGACTTGG+TGG + chr4_1:83577362-83577381 Msa0578920:intron 40.0%
CAAGTTTAGGGAAAACAAGC+TGG - chr4_1:83577423-83577442 None:intergenic 40.0%
!!! AGAAGGTGAATTGGTTTTCC+TGG + chr4_1:83578154-83578173 Msa0578920:intron 40.0%
!!! ATTGGTTTTCCTGGAGTTGA+TGG + chr4_1:83578163-83578182 Msa0578920:intron 40.0%
!! TTGGTTTTCCTGGAGTTGAT+GGG + chr4_1:83578164-83578183 Msa0578920:intron 40.0%
TTATTTCACCCATCAACTCC+AGG - chr4_1:83578175-83578194 None:intergenic 40.0%
!! GGAGTTGATGGGTGAAATAA+AGG + chr4_1:83578175-83578194 Msa0578920:intron 40.0%
TGGGTGAAATAAAGGGGATA+AGG + chr4_1:83578183-83578202 Msa0578920:intron 40.0%
GTGAAATAAAGGGGATAAGG+AGG + chr4_1:83578186-83578205 Msa0578920:intron 40.0%
ATAAAGGGGATAAGGAGGTT+AGG + chr4_1:83578191-83578210 Msa0578920:intron 40.0%
CTGTTCTGGCAGCAATATAT+AGG - chr4_1:83578734-83578753 None:intergenic 40.0%
CTATATATTGCTGCCAGAAC+AGG + chr4_1:83578732-83578751 Msa0578920:CDS 40.0%
TGACCTGGAATACACAAACA+TGG + chr4_1:83578850-83578869 Msa0578920:CDS 40.0%
GACCTGGAATACACAAACAT+GGG + chr4_1:83578851-83578870 Msa0578920:CDS 40.0%
TTCCCATGTTTGTGTATTCC+AGG - chr4_1:83578856-83578875 None:intergenic 40.0%
GGAATACACAAACATGGGAA+AGG + chr4_1:83578856-83578875 Msa0578920:CDS 40.0%
! ATGAACGAGAGGGATTTTGA+AGG + chr4_1:83579429-83579448 Msa0578920:intron 40.0%
!! GGATTTTGAAGGTGGTGTTA+TGG + chr4_1:83579440-83579459 Msa0578920:intron 40.0%
!!! TTTTGAAGGTGGTGTTATGG+TGG + chr4_1:83579443-83579462 Msa0578920:intron 40.0%
!! ACATGTAGCTGTTTCTATGG+AGG - chr4_1:83579602-83579621 None:intergenic 40.0%
TATTCTTCTGGTACTTGCAG+TGG + chr4_1:83579630-83579649 Msa0578920:intron 40.0%
TTAAGCTACCTGAAAGCAAG+TGG + chr4_1:83579669-83579688 Msa0578920:intron 40.0%
! TTACATTGCCACTTGCTTTC+AGG - chr4_1:83579680-83579699 None:intergenic 40.0%
! TAGCATTTTCCCCTGATTCA+AGG + chr4_1:83579910-83579929 Msa0578920:CDS 40.0%
CACCAGACTGATAGGAAAAA+AGG - chr4_1:83580190-83580209 None:intergenic 40.0%
! CCTTGATTGTTAGAGCATCT+CGG + chr4_1:83580220-83580239 Msa0578920:intron 40.0%
! ATTGTTAGAGCATCTCGGAT+GGG + chr4_1:83580225-83580244 Msa0578920:intron 40.0%
GAACATGTTCATTCTCCCTA+TGG - chr4_1:83580267-83580286 None:intergenic 40.0%
! GCAATTAACTTTGCCACTTC+AGG - chr4_1:83580315-83580334 None:intergenic 40.0%
AGTGCATTGTAGAGACCATT+TGG + chr4_1:83580428-83580447 Msa0578920:intron 40.0%
AGTAAGCAGCTATTGCAAGT+AGG - chr4_1:83580860-83580879 None:intergenic 40.0%
AATAGCTGCTTACTTCCTGA+AGG + chr4_1:83580866-83580885 Msa0578920:CDS 40.0%
CACTAAACTTCCCCCAAAAA+TGG - chr4_1:83580998-83581017 None:intergenic 40.0%
ATTCTGAGTGGTTGTACCAT+TGG + chr4_1:83581040-83581059 Msa0578920:three_prime_UTR 40.0%
TTCTGAGTGGTTGTACCATT+GGG + chr4_1:83581041-83581060 Msa0578920:three_prime_UTR 40.0%
! CCGTATTTCTTCAGGTTCGA+AGG - chr4_1:83573099-83573118 None:intergenic 45.0%
AAGGAACGCCGTATTTCTTC+AGG - chr4_1:83573107-83573126 None:intergenic 45.0%
ACCCAAGCAACGGAGTATAA+AGG - chr4_1:83573126-83573145 None:intergenic 45.0%
GTCGGAGGAATGATCATCAT+CGG - chr4_1:83573187-83573206 None:intergenic 45.0%
TTTATGATCGGCAGCATCGT+CGG - chr4_1:83573205-83573224 None:intergenic 45.0%
TGCCGATCATAAATCTTCGC+CGG + chr4_1:83573212-83573231 Msa0578920:CDS 45.0%
CTCCGGCGAAGATTTATGAT+CGG - chr4_1:83573217-83573236 None:intergenic 45.0%
TCATAAATCTTCGCCGGAGA+CGG + chr4_1:83573218-83573237 Msa0578920:CDS 45.0%
! GGGTGAAGTGCCATTCTATA+AGG - chr4_1:83573644-83573663 None:intergenic 45.0%
!! TGGAAAAGCCAAAGTGTTGC+AGG + chr4_1:83573690-83573709 Msa0578920:CDS 45.0%
TAAACACACACACAGAGGAG+GGG + chr4_1:83573846-83573865 Msa0578920:intron 45.0%
ATCCTCACAGCCAAACCATT+AGG + chr4_1:83573875-83573894 Msa0578920:intron 45.0%
! ATCCTAATGGTTTGGCTGTG+AGG - chr4_1:83573880-83573899 None:intergenic 45.0%
ACCATTAGGATGTAACCACG+AGG + chr4_1:83573889-83573908 Msa0578920:intron 45.0%
TCCTCGTGGTTACATCCTAA+TGG - chr4_1:83573893-83573912 None:intergenic 45.0%
ACAGAATTGTAAGCCGTGCT+TGG + chr4_1:83573935-83573954 Msa0578920:intron 45.0%
CAGAATTGTAAGCCGTGCTT+GGG + chr4_1:83573936-83573955 Msa0578920:intron 45.0%
!! ACTTTTAGAGGGTTGGCAAC+TGG + chr4_1:83574708-83574727 Msa0578920:intron 45.0%
ATTTAGCTAGTGGCAGCACT+AGG - chr4_1:83574772-83574791 None:intergenic 45.0%
GTTAAGGTCATGTGTTGCGT+TGG + chr4_1:83574844-83574863 Msa0578920:intron 45.0%
! GCGTGTATATAAATGGTGGG+TGG - chr4_1:83575083-83575102 None:intergenic 45.0%
TCAAACCATCTGCATGTGCA+AGG - chr4_1:83575269-83575288 None:intergenic 45.0%
CACATGCAGATGGTTTGACT+GGG + chr4_1:83575271-83575290 Msa0578920:intron 45.0%
CTCACCCAGTTGGATAATGT+TGG + chr4_1:83575350-83575369 Msa0578920:CDS 45.0%
CAGTCAAACCGTTACGAATG+TGG + chr4_1:83575622-83575641 Msa0578920:intron 45.0%
TAGGTCAGGGGACAAACAAA+TGG - chr4_1:83575814-83575833 None:intergenic 45.0%
GTATATTCCCACTAGGTCAG+GGG - chr4_1:83575826-83575845 None:intergenic 45.0%
GAAGATTCAGCCTAAATGGG+TGG + chr4_1:83575962-83575981 Msa0578920:intron 45.0%
CATTACAGGATGGCAGTCTA+AGG + chr4_1:83576266-83576285 Msa0578920:intron 45.0%
!! GCAGTCTAAGGGTTTTCAAG+TGG + chr4_1:83576278-83576297 Msa0578920:CDS 45.0%
!! TGATGGATTGTGGCTTAGTC+TGG + chr4_1:83576489-83576508 Msa0578920:intron 45.0%
! TGTCTGTCTTGCAGTTCTGA+TGG + chr4_1:83576515-83576534 Msa0578920:intron 45.0%
! TTGATTGTCTCTTTGGGAGG+TGG + chr4_1:83576542-83576561 Msa0578920:CDS 45.0%
CAGGATAGACTTGACTAGAC+AGG + chr4_1:83576807-83576826 Msa0578920:intron 45.0%
TGACACCATTAGAGAGAGAG+TGG + chr4_1:83576843-83576862 Msa0578920:intron 45.0%
GACACCATTAGAGAGAGAGT+GGG + chr4_1:83576844-83576863 Msa0578920:intron 45.0%
ACACCATTAGAGAGAGAGTG+GGG + chr4_1:83576845-83576864 Msa0578920:intron 45.0%
CTTCTTACAACGGCATCTAC+GGG - chr4_1:83576937-83576956 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG + chr4_1:83576960-83576979 Msa0578920:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG + chr4_1:83576970-83576989 Msa0578920:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr4_1:83577116-83577135 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr4_1:83577117-83577136 None:intergenic 45.0%
TAATTGGTCAGACCAGCATG+CGG + chr4_1:83577481-83577500 Msa0578920:intron 45.0%
TCAAACAAAGGATGGGACTC+AGG + chr4_1:83578707-83578726 Msa0578920:CDS 45.0%
!!! GTTTTGGAAGCATTGTGACC+TGG + chr4_1:83578835-83578854 Msa0578920:CDS 45.0%
GCATTCAATGTCTCAGCTGA+TGG + chr4_1:83578915-83578934 Msa0578920:CDS 45.0%
CTCAGCTGATGGAAAGTTTC+TGG + chr4_1:83578926-83578945 Msa0578920:CDS 45.0%
!! CTGATGGAAAGTTTCTGGCA+TGG + chr4_1:83578931-83578950 Msa0578920:CDS 45.0%
!! TTTAGACTTTGGCTCGGTTG+AGG + chr4_1:83578960-83578979 Msa0578920:intron 45.0%
GTTAAGCAACAGTGTGCTTG+TGG + chr4_1:83579167-83579186 Msa0578920:intron 45.0%
GTTAAGCAACAGTGTGCTTG+TGG + chr4_1:83579167-83579186 Msa0578920:intron 45.0%
!! AACGAGAGGGATTTTGAAGG+TGG + chr4_1:83579432-83579451 Msa0578920:intron 45.0%
TTTGGGAGGAATAACGTGTG+CGG + chr4_1:83579497-83579516 Msa0578920:intron 45.0%
GTCAAACATGTGGTTCACTG+TGG - chr4_1:83579575-83579594 None:intergenic 45.0%
TGGAGGACAAGTCAAACATG+TGG - chr4_1:83579585-83579604 None:intergenic 45.0%
AATGCACTCTTGAGGTCTGA+AGG - chr4_1:83579751-83579770 None:intergenic 45.0%
! TTTGGTGGCTTGATATGCAG+CGG + chr4_1:83579795-83579814 Msa0578920:intron 45.0%
CTAAAGCAGTTACTACGCCA+AGG - chr4_1:83579893-83579912 None:intergenic 45.0%
GGCTTCTATATTCAGGGCAT+TGG + chr4_1:83580003-83580022 Msa0578920:intron 45.0%
TATCCATGGATTCAAGTGCG+AGG + chr4_1:83580032-83580051 Msa0578920:CDS 45.0%
ATCCATGGATTCAAGTGCGA+GGG + chr4_1:83580033-83580052 Msa0578920:CDS 45.0%
CCGAGATGCTCTAACAATCA+AGG - chr4_1:83580223-83580242 None:intergenic 45.0%
! GATTGTTAGAGCATCTCGGA+TGG + chr4_1:83580224-83580243 Msa0578920:intron 45.0%
! TTGTTAGAGCATCTCGGATG+GGG + chr4_1:83580226-83580245 Msa0578920:intron 45.0%
!! CTCGGATGGGGGTATTTAAA+AGG + chr4_1:83580238-83580257 Msa0578920:intron 45.0%
GTGTATGAAACTCCTGAACG+TGG + chr4_1:83580456-83580475 Msa0578920:intron 45.0%
ACAATGGGGTCATGTGCTAT+AGG - chr4_1:83580773-83580792 None:intergenic 45.0%
GCTTACTTCCTGAAGGTTGA+AGG + chr4_1:83580873-83580892 Msa0578920:CDS 45.0%
!! TAAAATAATAAATTAATGAA+TGG - chr4_1:83575538-83575557 None:intergenic 5.0%
!!! GATTTATTTATATATTTTTA+TGG + chr4_1:83581194-83581213 Msa0578920:three_prime_UTR 5.0%
! TCTTCAGGTTCGAAGGGTCT+GGG - chr4_1:83573092-83573111 None:intergenic 50.0%
! TTCTTCAGGTTCGAAGGGTC+TGG - chr4_1:83573093-83573112 None:intergenic 50.0%
GGAGGAATGATCATCATCGG+CGG - chr4_1:83573184-83573203 None:intergenic 50.0%
GGCAAACACGACGTACTTTC+CGG - chr4_1:83573256-83573275 None:intergenic 50.0%
! GGAAAGTACGTCGTGTTTGC+CGG + chr4_1:83573255-83573274 Msa0578920:CDS 50.0%
TGCCCGAGCAACACAGAATT+AGG - chr4_1:83573309-83573328 None:intergenic 50.0%
CGGGCATTTCGATGTTGCAT+CGG + chr4_1:83573323-83573342 Msa0578920:CDS 50.0%
GGATTCTCTCTCTGATCCAC+CGG + chr4_1:83573344-83573363 Msa0578920:CDS 50.0%
AGAATGGCACTTCACCCCAA+CGG + chr4_1:83573647-83573666 Msa0578920:CDS 50.0%
AAACACACACACAGAGGAGG+GGG + chr4_1:83573847-83573866 Msa0578920:intron 50.0%
TAACTTGGTCAGCCCAAGCA+CGG - chr4_1:83573951-83573970 None:intergenic 50.0%
! AGGGTTGGCAACTGGATGAT+TGG + chr4_1:83574716-83574735 Msa0578920:intron 50.0%
GCAGCACTAGGACATGTTCT+GGG - chr4_1:83574760-83574779 None:intergenic 50.0%
GTACGGGTTTACTGCATTGC+AGG + chr4_1:83574796-83574815 Msa0578920:intron 50.0%
GCATGAAGCCCAATAGTGCT+GGG + chr4_1:83575101-83575120 Msa0578920:intron 50.0%
CATGAAGCCCAATAGTGCTG+GGG + chr4_1:83575102-83575121 Msa0578920:intron 50.0%
! ATGAAGCCCAATAGTGCTGG+GGG + chr4_1:83575103-83575122 Msa0578920:intron 50.0%
CTATGCCTTGCACATGCAGA+TGG + chr4_1:83575261-83575280 Msa0578920:intron 50.0%
GCACATGCAGATGGTTTGAC+TGG + chr4_1:83575270-83575289 Msa0578920:intron 50.0%
AGAGAAGCTTCTCACCCAGT+TGG + chr4_1:83575340-83575359 Msa0578920:CDS 50.0%
GATGGTACTACACTAGCTGC+TGG + chr4_1:83575401-83575420 Msa0578920:CDS 50.0%
TTGTTTGTCCCCTGACCTAG+TGG + chr4_1:83575815-83575834 Msa0578920:intron 50.0%
TGTTTGTCCCCTGACCTAGT+GGG + chr4_1:83575816-83575835 Msa0578920:intron 50.0%
! TTGTCGGTTGCCACCCATTT+AGG - chr4_1:83575975-83575994 None:intergenic 50.0%
!!! GGTTTTCAAGTGGCCTAGCA+TGG + chr4_1:83576288-83576307 Msa0578920:CDS 50.0%
! ATTGTCTCTTTGGGAGGTGG+CGG + chr4_1:83576545-83576564 Msa0578920:CDS 50.0%
AAACATCCCAAACCCTGCAG+GGG - chr4_1:83576571-83576590 None:intergenic 50.0%
GAAACATCCCAAACCCTGCA+GGG - chr4_1:83576572-83576591 None:intergenic 50.0%
AGAAACATCCCAAACCCTGC+AGG - chr4_1:83576573-83576592 None:intergenic 50.0%
CACCATTAGAGAGAGAGTGG+GGG + chr4_1:83576846-83576865 Msa0578920:intron 50.0%
TACCCCCACTCTCTCTCTAA+TGG - chr4_1:83576851-83576870 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr4_1:83577112-83577131 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr4_1:83577118-83577137 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr4_1:83577115-83577134 Msa0578920:intron 50.0%
AATTGGTCAGACCAGCATGC+GGG + chr4_1:83577482-83577501 Msa0578920:intron 50.0%
! GGAAGGAGGGAGTATGTTGT+TGG - chr4_1:83578233-83578252 None:intergenic 50.0%
GGCTTGTAACAAGGGAAGGA+GGG - chr4_1:83578246-83578265 None:intergenic 50.0%
TCAGGGCTTGTAACAAGGGA+AGG - chr4_1:83578250-83578269 None:intergenic 50.0%
GCAGTCAGGGCTTGTAACAA+GGG - chr4_1:83578254-83578273 None:intergenic 50.0%
TGCAGTCAGGGCTTGTAACA+AGG - chr4_1:83578255-83578274 None:intergenic 50.0%
TTACTGCCTTGGGCGAACAT+GGG + chr4_1:83578551-83578570 Msa0578920:intron 50.0%
CATATTCCCATGTTCGCCCA+AGG - chr4_1:83578560-83578579 None:intergenic 50.0%
CTTGGGCGAACATGGGAATA+TGG + chr4_1:83578558-83578577 Msa0578920:intron 50.0%
TGTGCTTGTGGATGAACGAG+AGG + chr4_1:83579179-83579198 Msa0578920:intron 50.0%
GTGCTTGTGGATGAACGAGA+GGG + chr4_1:83579180-83579199 Msa0578920:intron 50.0%
TGGATGAACGAGAGGGACTT+TGG + chr4_1:83579187-83579206 Msa0578920:intron 50.0%
TGTGCTTGTGGATGAACGAG+AGG + chr4_1:83579179-83579198 Msa0578920:intron 50.0%
GTGCTTGTGGATGAACGAGA+GGG + chr4_1:83579180-83579199 Msa0578920:intron 50.0%
!! GTGTTATGGTGGACAGTGAG+TGG + chr4_1:83579454-83579473 Msa0578920:intron 50.0%
ATATGCAGCGGAACACCTGA+AGG + chr4_1:83579807-83579826 Msa0578920:intron 50.0%
!! GGCATTGGCTTCTGTATCCA+TGG + chr4_1:83580018-83580037 Msa0578920:CDS 50.0%
TACCCTCGCACTTGAATCCA+TGG - chr4_1:83580038-83580057 None:intergenic 50.0%
! TGTTAGAGCATCTCGGATGG+GGG + chr4_1:83580227-83580246 Msa0578920:intron 50.0%
TCCATTGGAGGAACCTGAAG+TGG + chr4_1:83580299-83580318 Msa0578920:intron 50.0%
CGATTGTGTATCAAGTGGCG+TGG + chr4_1:83580747-83580766 Msa0578920:intron 50.0%
TTTAAGGAGGAGGACTGAGC+TGG + chr4_1:83580814-83580833 Msa0578920:intron 50.0%
GGATTGTGGGACCCAAGCAA+CGG - chr4_1:83573136-83573155 None:intergenic 55.0%
GCGTCAATTGCTTCCGTCTC+CGG - chr4_1:83573234-83573253 None:intergenic 55.0%
GAGACGGAAGCAATTGACGC+CGG + chr4_1:83573234-83573253 Msa0578920:CDS 55.0%
AAGTACGTCGTGTTTGCCGG+TGG + chr4_1:83573258-83573277 Msa0578920:CDS 55.0%
TCGAGTATGGGTAGGCCACT+AGG - chr4_1:83573825-83573844 None:intergenic 55.0%
AACACACACACAGAGGAGGG+GGG + chr4_1:83573848-83573867 Msa0578920:intron 55.0%
! GTCTGGCTTCAATGTCCTCG+TGG - chr4_1:83573907-83573926 None:intergenic 55.0%
GGCAGCACTAGGACATGTTC+TGG - chr4_1:83574761-83574780 None:intergenic 55.0%
CGGGTTTACTGCATTGCAGG+AGG + chr4_1:83574799-83574818 Msa0578920:intron 55.0%
CGCATGAAGCCCAATAGTGC+TGG + chr4_1:83575100-83575119 Msa0578920:intron 55.0%
GGTACTACACTAGCTGCTGG+TGG + chr4_1:83575404-83575423 Msa0578920:CDS 55.0%
TACACTAGCTGCTGGTGGAG+AGG + chr4_1:83575409-83575428 Msa0578920:CDS 55.0%
! AGCTGCTGGTGGAGAGGTAT+TGG + chr4_1:83575415-83575434 Msa0578920:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr4_1:83577104-83577123 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr4_1:83577103-83577122 Msa0578920:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr4_1:83577104-83577123 Msa0578920:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr4_1:83577110-83577129 Msa0578920:intron 55.0%
TTGAACCGTCAGACCAGCAC+TGG + chr4_1:83577394-83577413 Msa0578920:intron 55.0%
AACAAGCTGGTTGCCAGTGC+TGG - chr4_1:83577410-83577429 None:intergenic 55.0%
GGGCTTGTAACAAGGGAAGG+AGG - chr4_1:83578247-83578266 None:intergenic 55.0%
CTTACTGCCTTGGGCGAACA+TGG + chr4_1:83578550-83578569 Msa0578920:intron 55.0%
GAACGAGAGGGACTTTGGCT+AGG + chr4_1:83579192-83579211 Msa0578920:intron 55.0%
GAGGGACTTTGGCTAGGTTG+AGG + chr4_1:83579198-83579217 Msa0578920:intron 55.0%
! GCCACTTCAGGTTCCTCCAA+TGG - chr4_1:83580303-83580322 None:intergenic 55.0%
ATGATCGGCAGCATCGTCGG+AGG - chr4_1:83573202-83573221 None:intergenic 60.0%
TACGTCGTGTTTGCCGGTGG+CGG + chr4_1:83573261-83573280 Msa0578920:CDS 60.0%
GCACTTCACCCCAACGGAGA+AGG + chr4_1:83573653-83573672 Msa0578920:CDS 60.0%
CCCTCACCCCCAGCACTATT+GGG - chr4_1:83575112-83575131 None:intergenic 60.0%
! CCCAATAGTGCTGGGGGTGA+GGG + chr4_1:83575109-83575128 Msa0578920:intron 60.0%
! CCAATAGTGCTGGGGGTGAG+GGG + chr4_1:83575110-83575129 Msa0578920:intron 60.0%
! CAATAGTGCTGGGGGTGAGG+GGG + chr4_1:83575111-83575130 Msa0578920:intron 60.0%
!! GGTTGCCAGTGCTGGTCTGA+CGG - chr4_1:83577402-83577421 None:intergenic 60.0%
AAGGAGGAGGACTGAGCTGG+TGG + chr4_1:83580817-83580836 Msa0578920:intron 60.0%
! GCCCAATAGTGCTGGGGGTG+AGG + chr4_1:83575108-83575127 Msa0578920:intron 65.0%
CCCCTCACCCCCAGCACTAT+TGG - chr4_1:83575113-83575132 None:intergenic 65.0%
CTGGGAATCTGCCCGCATGC+TGG - chr4_1:83577496-83577515 None:intergenic 65.0%
! GTCGTGTTTGCCGGTGGCGG+TGG + chr4_1:83573264-83573283 Msa0578920:CDS 70.0%
GCGGCTATCTCCACCGCCAC+CGG - chr4_1:83573277-83573296 None:intergenic 70.0%
GGCGGTGGAGATAGCCGCAG+TGG + chr4_1:83573279-83573298 Msa0578920:CDS 70.0%
TGGCGGCCCCTGCAGGGTTT+GGG + chr4_1:83576562-83576581 Msa0578920:CDS 70.0%
GTGGCGGCCCCTGCAGGGTT+TGG + chr4_1:83576561-83576580 Msa0578920:CDS 75.0%
!! TGGGAGGTGGCGGCCCCTGC+AGG + chr4_1:83576555-83576574 Msa0578920:CDS 80.0%
!! GGGAGGTGGCGGCCCCTGCA+GGG + chr4_1:83576556-83576575 Msa0578920:CDS 80.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 83572959 83581248 83572959 ID=Msa0578920;Name=Msa0578920
chr4_1 mRNA 83572959 83581248 83572959 ID=Msa0578920-mRNA-1;Parent=Msa0578920;Name=Msa0578920-mRNA-1;_AED=0.05;_eAED=0.05;_QI=113|1|1|1|1|1|10|313|411
chr4_1 exon 83572959 83573365 83572959 ID=Msa0578920-mRNA-1:exon:30424;Parent=Msa0578920-mRNA-1
chr4_1 exon 83573611 83573711 83573611 ID=Msa0578920-mRNA-1:exon:30425;Parent=Msa0578920-mRNA-1
chr4_1 exon 83575280 83575430 83575280 ID=Msa0578920-mRNA-1:exon:30426;Parent=Msa0578920-mRNA-1
chr4_1 exon 83576274 83576365 83576274 ID=Msa0578920-mRNA-1:exon:30427;Parent=Msa0578920-mRNA-1
chr4_1 exon 83576529 83576628 83576529 ID=Msa0578920-mRNA-1:exon:30428;Parent=Msa0578920-mRNA-1
chr4_1 exon 83578678 83578753 83578678 ID=Msa0578920-mRNA-1:exon:30429;Parent=Msa0578920-mRNA-1
chr4_1 exon 83578829 83578952 83578829 ID=Msa0578920-mRNA-1:exon:30430;Parent=Msa0578920-mRNA-1
chr4_1 exon 83579815 83579931 83579815 ID=Msa0578920-mRNA-1:exon:30431;Parent=Msa0578920-mRNA-1
chr4_1 exon 83580018 83580082 83580018 ID=Msa0578920-mRNA-1:exon:30432;Parent=Msa0578920-mRNA-1
chr4_1 exon 83580820 83581248 83580820 ID=Msa0578920-mRNA-1:exon:30433;Parent=Msa0578920-mRNA-1
chr4_1 five_prime_UTR 83572959 83573071 83572959 ID=Msa0578920-mRNA-1:five_prime_utr;Parent=Msa0578920-mRNA-1
chr4_1 CDS 83573072 83573365 83573072 ID=Msa0578920-mRNA-1:cds;Parent=Msa0578920-mRNA-1
chr4_1 CDS 83573611 83573711 83573611 ID=Msa0578920-mRNA-1:cds;Parent=Msa0578920-mRNA-1
chr4_1 CDS 83575280 83575430 83575280 ID=Msa0578920-mRNA-1:cds;Parent=Msa0578920-mRNA-1
chr4_1 CDS 83576274 83576365 83576274 ID=Msa0578920-mRNA-1:cds;Parent=Msa0578920-mRNA-1
chr4_1 CDS 83576529 83576628 83576529 ID=Msa0578920-mRNA-1:cds;Parent=Msa0578920-mRNA-1
chr4_1 CDS 83578678 83578753 83578678 ID=Msa0578920-mRNA-1:cds;Parent=Msa0578920-mRNA-1
chr4_1 CDS 83578829 83578952 83578829 ID=Msa0578920-mRNA-1:cds;Parent=Msa0578920-mRNA-1
chr4_1 CDS 83579815 83579931 83579815 ID=Msa0578920-mRNA-1:cds;Parent=Msa0578920-mRNA-1
chr4_1 CDS 83580018 83580082 83580018 ID=Msa0578920-mRNA-1:cds;Parent=Msa0578920-mRNA-1
chr4_1 CDS 83580820 83580935 83580820 ID=Msa0578920-mRNA-1:cds;Parent=Msa0578920-mRNA-1
chr4_1 three_prime_UTR 83580936 83581248 83580936 ID=Msa0578920-mRNA-1:three_prime_utr;Parent=Msa0578920-mRNA-1
Gene Sequence

>Msa0578920

ATGGGGAAAAAGCACGTCCCAGACCCTTCGAACCTGAAGAAATACGGCGTTCCTTTATACTCCGTTGCTTGGGTCCCACAATCCATTCTCAAATCGCTTCAAAACGTAACCGCCGATGATGATCATTCCTCCGACGATGCTGCCGATCATAAATCTTCGCCGGAGACGGAAGCAATTGACGCCGGAAAGTACGTCGTGTTTGCCGGTGGCGGTGGAGATAGCCGCAGTGGTATTCCTAATTCTGTGTTGCTCGGGCATTTCGATGTTGCATCGGATTCTCTCTCTGATCCACCGGTGTTTAAGCTAGGAACTAATTCCGAGTTGCCTTATAGAATGGCACTTCACCCCAACGGAGAAGGCATTATTTGTGCAATGGAAAAGCCAAAGTGTTGCAGATGGTTTGACTGGGATCAAAACGAGAATGCTGAAATTCACAAGTTGGGTCTGAAGGTTTCAGAGAAGCTTCTCACCCAGTTGGATAATGTTGGACAACAATTAGCATTGGCATTCAACAATGATGGTACTACACTAGCTGCTGGTGGAGAGGATGGCAGTCTAAGGGTTTTCAAGTGGCCTAGCATGGAAAATATTCTCAACGAGTCCAATGCTCATTCTACTGTGAAGGACTTGCATTTTAGTTCTGATGGCAAGTTGATTGTCTCTTTGGGAGGTGGCGGCCCCTGCAGGGTTTGGGATGTTTCTTCAGCAATCGTCTTAGCTACTCTAGCAAATGAAAATCGTGAAAATTTTAGCTCTTGCAGATTTTCTCAAACAAAGGATGGGACTCAGGTCCTATATATTGCTGCCAGAACAGATAAAGGTTTTGGAAGCATTGTGACCTGGAATACACAAACATGGGAAAGGATTAGTTCAAAGCATATTTTGCGCGATCCAATATGTGCATTCAATGTCTCAGCTGATGGAAAGTTTCTGGCATGCGGAACACCTGAAGGAGATATTGTAATTGTAAATTCAACAAATATGCAGATTCAGACAATGATAAAAAAGGCTCACCTTGGCGTAGTAACTGCTTTAGCATTTTCCCCTGATTCAAGGGCATTGGCTTCTGTATCCATGGATTCAAGTGCGAGGGTAACAATAATTGAAGAGAAGAAAAATGGAGGAGGACTGAGCTGGTGGATTGCAATATTTATCATCCTACTTGCAATAGCTGCTTACTTCCTGAAGGTTGAAGGAATTGAAAAGTTAAAGCTTCAATATTACAATCAATTGTAG

Protein sequence

>Msa0578920

MGKKHVPDPSNLKKYGVPLYSVAWVPQSILKSLQNVTADDDHSSDDAADHKSSPETEAIDAGKYVVFAGGGGDSRSGIPNSVLLGHFDVASDSLSDPPVFKLGTNSELPYRMALHPNGEGIICAMEKPKCCRWFDWDQNENAEIHKLGLKVSEKLLTQLDNVGQQLALAFNNDGTTLAAGGEDGSLRVFKWPSMENILNESNAHSTVKDLHFSSDGKLIVSLGGGGPCRVWDVSSAIVLATLANENRENFSSCRFSQTKDGTQVLYIAARTDKGFGSIVTWNTQTWERISSKHILRDPICAFNVSADGKFLACGTPEGDIVIVNSTNMQIQTMIKKAHLGVVTALAFSPDSRALASVSMDSSARVTIIEEKKNGGGLSWWIAIFIILLAIAAYFLKVEGIEKLKLQYYNQL*