AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0610880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0610880 MtrunA17_Chr4g0043971 96.837 411 13 0 1 411 1 411 0.0 824
Msa0610880 MtrunA17_Chr1g0197641 32.239 335 208 9 72 398 30 353 7.70e-50 173
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0610880 AT2G01470.1 49.492 394 184 7 9 400 11 391 2.85e-113 337
Msa0610880 AT5G50650.1 48.564 383 174 8 1 382 1 361 1.83e-110 330
Msa0610880 AT5G50550.1 48.564 383 174 8 1 382 1 361 1.83e-110 330
Msa0610880 AT3G52190.1 29.674 337 221 7 64 393 27 354 3.23e-42 153

Find 117 sgRNAs with CRISPR-Local

Find 575 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAGCTGATGGAAAGTTTC+TGG 0.216501 4_2:+58800173 Msa0610880:CDS
GTGGCGGCCCCTGCAGGGTT+TGG 0.223489 4_2:+58797808 Msa0610880:CDS
TGGGAGGTGGCGGCCCCTGC+AGG 0.245520 4_2:+58797802 Msa0610880:CDS
TGGCAAGTTGATTGTCTCTT+TGG 0.248816 4_2:+58797782 Msa0610880:CDS
AATTGTTTGGGATATCAATT+TGG 0.285256 4_2:+58802413 Msa0610880:three_prime_UTR
CAATCATGAGTAAAATTGTT+TGG 0.285270 4_2:+58802400 Msa0610880:three_prime_UTR
TTCTTCAGGTTCGAAGGGTC+TGG 0.285342 4_2:-58794337 None:intergenic
TTCATTACAAACCTTGAATC+AGG 0.290274 4_2:-58801169 None:intergenic
ATTATGGTGTTAAATTGTTA+TGG 0.295755 4_2:+58802350 Msa0610880:three_prime_UTR
TTCCCATGTTTGTGTATTCC+AGG 0.301485 4_2:-58800100 None:intergenic
TGCAAAATATATACCTGTTC+TGG 0.301923 4_2:-58799992 None:intergenic
TGGCGGCCCCTGCAGGGTTT+GGG 0.305184 4_2:+58797809 Msa0610880:CDS
CATTACAGGATGGCAGTCTA+AGG 0.306362 4_2:+58797513 Msa0610880:intron
TGCCCGAGCAACACAGAATT+AGG 0.307606 4_2:-58794553 None:intergenic
CTCTGTAGATTGTATAATTA+TGG 0.316112 4_2:+58802334 Msa0610880:three_prime_UTR
AAGGAACGCCGTATTTCTTC+AGG 0.327746 4_2:-58794351 None:intergenic
GGCAAACACGACGTACTTTC+CGG 0.330888 4_2:-58794500 None:intergenic
TTTCAATTCCTTCAACCTTC+AGG 0.340231 4_2:-58802129 None:intergenic
GGCAAGTTGATTGTCTCTTT+GGG 0.342939 4_2:+58797783 Msa0610880:CDS
TCCTTTATACTCCGTTGCTT+GGG 0.350058 4_2:+58794369 Msa0610880:CDS
AATCATGAGTAAAATTGTTT+GGG 0.352241 4_2:+58802401 Msa0610880:three_prime_UTR
CAAATAATGCCTTCTCCGTT+GGG 0.363852 4_2:-58794909 None:intergenic
TTCCTTTATACTCCGTTGCT+TGG 0.367492 4_2:+58794368 Msa0610880:CDS
ACAATTACAATATCTCCTTC+AGG 0.370620 4_2:-58801070 None:intergenic
TGGAAAAGCCAAAGTGTTGC+AGG 0.370641 4_2:+58794937 Msa0610880:CDS
GGAAAGTACGTCGTGTTTGC+CGG 0.376827 4_2:+58794502 Msa0610880:CDS
GAGACATTGAATGCACATAT+TGG 0.384246 4_2:-58800153 None:intergenic
GGCTTCTATATTCAGGGCAT+TGG 0.384344 4_2:+58801251 Msa0610880:intron
CTATATATTGCTGCCAGAAC+AGG 0.392636 4_2:+58799979 Msa0610880:CDS
GTTGTCCAACATTATCCAAC+TGG 0.393760 4_2:-58796602 None:intergenic
GCGTCAATTGCTTCCGTCTC+CGG 0.394671 4_2:-58794478 None:intergenic
CTGTTCTGGCAGCAATATAT+AGG 0.411746 4_2:-58799978 None:intergenic
GTCGTGTTTGCCGGTGGCGG+TGG 0.413598 4_2:+58794511 Msa0610880:CDS
TTCTGAGTGGTTGTACCATT+GGG 0.413763 4_2:+58802289 Msa0610880:three_prime_UTR
GGGTGAAGTGCCATTCTATA+AGG 0.419923 4_2:-58794888 None:intergenic
ACAAATAATGCCTTCTCCGT+TGG 0.423444 4_2:-58794910 None:intergenic
GGGAGGTGGCGGCCCCTGCA+GGG 0.426848 4_2:+58797803 Msa0610880:CDS
TCTTCAGGTTCGAAGGGTCT+GGG 0.434306 4_2:-58794336 None:intergenic
ACCCAAGCAACGGAGTATAA+AGG 0.435918 4_2:-58794370 None:intergenic
GGCATTGGCTTCTGTATCCA+TGG 0.443307 4_2:+58801266 Msa0610880:CDS
TTCCGAGTTGCCTTATAGAA+TGG 0.446113 4_2:+58794878 Msa0610880:CDS
ATTCCTAATTCTGTGTTGCT+CGG 0.447796 4_2:+58794550 Msa0610880:CDS
TCATAAATCTTCGCCGGAGA+CGG 0.463175 4_2:+58794465 Msa0610880:CDS
GCTTACTTCCTGAAGGTTGA+AGG 0.465391 4_2:+58802121 Msa0610880:CDS
TTCCTAATTCTGTGTTGCTC+GGG 0.466232 4_2:+58794551 Msa0610880:CDS
TTGATTGTCTCTTTGGGAGG+TGG 0.468915 4_2:+58797789 Msa0610880:CDS
ATTCTGAGTGGTTGTACCAT+TGG 0.471625 4_2:+58802288 Msa0610880:three_prime_UTR
TGTCTGTCTTGCAGTTCTGA+TGG 0.472254 4_2:+58797762 Msa0610880:intron
ATTGTAGAAATATTTACTGC+TGG 0.478308 4_2:+58802177 Msa0610880:exon
GCACATGCAGATGGTTTGAC+TGG 0.489183 4_2:+58796517 Msa0610880:intron
AAAGAAGACCTGCAACACTT+TGG 0.491375 4_2:-58794945 None:intergenic
CCGTATTTCTTCAGGTTCGA+AGG 0.492140 4_2:-58794343 None:intergenic
GAATGCTGAAATTCACAAGT+TGG 0.497117 4_2:+58796551 Msa0610880:CDS
ATATTTCAGGTGTTTAAGCT+AGG 0.498331 4_2:+58794849 Msa0610880:intron
TACGTCGTGTTTGCCGGTGG+CGG 0.499692 4_2:+58794508 Msa0610880:CDS
GCATTGGCATTCAACAATGA+TGG 0.500116 4_2:+58796630 Msa0610880:CDS
CGGGCATTTCGATGTTGCAT+CGG 0.507244 4_2:+58794570 Msa0610880:CDS
AATGCTGAAATTCACAAGTT+GGG 0.510662 4_2:+58796552 Msa0610880:CDS
AATTCACAAGTTGGGTCTGA+AGG 0.511078 4_2:+58796560 Msa0610880:CDS
AGAGAAGCTTCTCACCCAGT+TGG 0.514272 4_2:+58796587 Msa0610880:CDS
TACCCTCGCACTTGAATCCA+TGG 0.515086 4_2:-58801283 None:intergenic
CTCACCCAGTTGGATAATGT+TGG 0.517477 4_2:+58796597 Msa0610880:CDS
TTTATGATCGGCAGCATCGT+CGG 0.517957 4_2:-58794449 None:intergenic
AGAAACATCCCAAACCCTGC+AGG 0.518415 4_2:-58797817 None:intergenic
TTTAAGGAGGAGGACTGAGC+TGG 0.530683 4_2:+58802062 Msa0610880:intron
TCAAACAAAGGATGGGACTC+AGG 0.539755 4_2:+58799954 Msa0610880:CDS
ATTGTCTCTTTGGGAGGTGG+CGG 0.541675 4_2:+58797792 Msa0610880:CDS
CCTTCGAACCTGAAGAAATA+CGG 0.542571 4_2:+58794343 Msa0610880:CDS
GCGGCTATCTCCACCGCCAC+CGG 0.547245 4_2:-58794521 None:intergenic
TGTTGGACAACAATTAGCAT+TGG 0.547834 4_2:+58796614 Msa0610880:CDS
TCATTACAAACCTTGAATCA+GGG 0.548645 4_2:-58801168 None:intergenic
AGAAGGCATTATTTGTGCAA+TGG 0.551687 4_2:+58794917 Msa0610880:CDS
CGTATTTCTTCAGGTTCGAA+GGG 0.557599 4_2:-58794342 None:intergenic
GCACTTCACCCCAACGGAGA+AGG 0.558496 4_2:+58794900 Msa0610880:CDS
AATAGCTGCTTACTTCCTGA+AGG 0.563268 4_2:+58802114 Msa0610880:CDS
TTATACAATCTACAGAGCAT+TGG 0.565341 4_2:-58802328 None:intergenic
GCATTCAATGTCTCAGCTGA+TGG 0.568791 4_2:+58800162 Msa0610880:CDS
CAATGCTCATTCTACTGTGA+AGG 0.569819 4_2:+58797577 Msa0610880:CDS
GAAACATCCCAAACCCTGCA+GGG 0.570028 4_2:-58797816 None:intergenic
CACATGCAGATGGTTTGACT+GGG 0.572817 4_2:+58796518 Msa0610880:intron
GCGATTTGAGAATGGATTGT+GGG 0.575042 4_2:-58794393 None:intergenic
AAGGAGGAGGACTGAGCTGG+TGG 0.586192 4_2:+58802065 Msa0610880:intron
CATTACAAACCTTGAATCAG+GGG 0.586918 4_2:-58801167 None:intergenic
CTTCACAGTAGAATGAGCAT+TGG 0.587615 4_2:-58797576 None:intergenic
GGATTCTCTCTCTGATCCAC+CGG 0.588348 4_2:+58794591 Msa0610880:CDS
TACACTAGCTGCTGGTGGAG+AGG 0.593622 4_2:+58796656 Msa0610880:CDS
AGTAAGCAGCTATTGCAAGT+AGG 0.596054 4_2:-58802105 None:intergenic
ATTACAGGATGGCAGTCTAA+GGG 0.596584 4_2:+58797514 Msa0610880:intron
ATATGCAGCGGAACACCTGA+AGG 0.596958 4_2:+58801055 Msa0610880:intron
TGACCTGGAATACACAAACA+TGG 0.596985 4_2:+58800097 Msa0610880:CDS
AAGTACGTCGTGTTTGCCGG+TGG 0.600942 4_2:+58794505 Msa0610880:CDS
GTCGGAGGAATGATCATCAT+CGG 0.601246 4_2:-58794431 None:intergenic
AAGTTGATTGTCTCTTTGGG+AGG 0.601665 4_2:+58797786 Msa0610880:CDS
ATCCATGGATTCAAGTGCGA+GGG 0.604094 4_2:+58801281 Msa0610880:CDS
TGCCGATCATAAATCTTCGC+CGG 0.604371 4_2:+58794459 Msa0610880:CDS
GATGGTACTACACTAGCTGC+TGG 0.619769 4_2:+58796648 Msa0610880:CDS
AGCGATTTGAGAATGGATTG+TGG 0.621404 4_2:-58794394 None:intergenic
CTGATGGAAAGTTTCTGGCA+TGG 0.623936 4_2:+58800178 Msa0610880:CDS
CTCCGGCGAAGATTTATGAT+CGG 0.625230 4_2:-58794461 None:intergenic
TGCCATTCTATAAGGCAACT+CGG 0.627739 4_2:-58794880 None:intergenic
GGAATACACAAACATGGGAA+AGG 0.627776 4_2:+58800103 Msa0610880:CDS
CTAAAGCAGTTACTACGCCA+AGG 0.630301 4_2:-58801138 None:intergenic
AAATAATGCCTTCTCCGTTG+GGG 0.636673 4_2:-58794908 None:intergenic
GACCTGGAATACACAAACAT+GGG 0.637351 4_2:+58800098 Msa0610880:CDS
ATGATCGGCAGCATCGTCGG+AGG 0.640539 4_2:-58794446 None:intergenic
GGATTGTGGGACCCAAGCAA+CGG 0.641995 4_2:-58794380 None:intergenic
TTGTCCAACATTATCCAACT+GGG 0.643522 4_2:-58796601 None:intergenic
AAACATCCCAAACCCTGCAG+GGG 0.644586 4_2:-58797815 None:intergenic
GGCGGTGGAGATAGCCGCAG+TGG 0.656943 4_2:+58794526 Msa0610880:CDS
GAGACGGAAGCAATTGACGC+CGG 0.659922 4_2:+58794481 Msa0610880:CDS
TATCCATGGATTCAAGTGCG+AGG 0.661757 4_2:+58801280 Msa0610880:CDS
GAGACATTATCATATCCCAA+TGG 0.664860 4_2:-58802304 None:intergenic
AGAATGGCACTTCACCCCAA+CGG 0.669541 4_2:+58794894 Msa0610880:CDS
GGTACTACACTAGCTGCTGG+TGG 0.673466 4_2:+58796651 Msa0610880:CDS
AACCTTACTCGACTAGACGG+AGG 0.719530 4_2:+58794192 None:intergenic
GGAGGAATGATCATCATCGG+CGG 0.741993 4_2:-58794428 None:intergenic
CAGAATTAGGAATACCACTG+CGG 0.790181 4_2:-58794540 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTTATATATTTTTTA+TGG + chr4_2:58802443-58802462 Msa0610880:three_prime_UTR 0.0%
!! TTAAAAAATTTAAGAGTTTA+AGG + chr4_2:58799210-58799229 Msa0610880:intron 10.0%
!!! ATAAGTAAATTTTTTTTTGT+AGG + chr4_2:58799271-58799290 Msa0610880:intron 10.0%
!!! TAAGTAAATTTTTTTTTGTA+GGG + chr4_2:58799272-58799291 Msa0610880:intron 10.0%
!! TTTACTTTATTATAAATGTT+GGG - chr4_2:58799745-58799764 None:intergenic 10.0%
!!! TTTTACTTTATTATAAATGT+TGG - chr4_2:58799746-58799765 None:intergenic 10.0%
!! TTATTTATTTAATATCATGT+TGG - chr4_2:58801903-58801922 None:intergenic 10.0%
!! TAAAATTATCAATGAAATAT+AGG + chr4_2:58801927-58801946 Msa0610880:intron 10.0%
!!! TATATATTTTTTATGGAATT+TGG + chr4_2:58802450-58802469 Msa0610880:three_prime_UTR 10.0%
!! AAGAAATATATAAAATGTAC+CGG - chr4_2:58794613-58794632 None:intergenic 15.0%
!! ACTATTTATATCTTATAGTT+AGG - chr4_2:58795786-58795805 None:intergenic 15.0%
!! AAACTATCAATACAATATTA+TGG - chr4_2:58796118-58796137 None:intergenic 15.0%
!! TATAGTTAGTTGTAAATATT+AGG - chr4_2:58796471-58796490 None:intergenic 15.0%
!! CTTCATTTATATGAATTTAA+AGG - chr4_2:58796691-58796710 None:intergenic 15.0%
!! TGAAGTAAAAAGATAATTTA+TGG + chr4_2:58796750-58796769 Msa0610880:intron 15.0%
!! ACAAAAATACAAATATCATA+TGG - chr4_2:58797492-58797511 None:intergenic 15.0%
!! TATTTAGTCTATTTATAAAC+AGG + chr4_2:58798035-58798054 Msa0610880:intron 15.0%
!!! TTTTTTTATGATATCCTAAA+GGG + chr4_2:58798812-58798831 Msa0610880:intron 15.0%
!! AATGCTATTAAAATTAAGTA+AGG - chr4_2:58798887-58798906 None:intergenic 15.0%
!! AAGCATAAATTAAACAAATT+TGG - chr4_2:58798959-58798978 None:intergenic 15.0%
!!! TTTTTCAACAATTTTTTTAC+AGG + chr4_2:58798990-58799009 Msa0610880:intron 15.0%
!! ATATTAAGAACGTTATTAAA+AGG + chr4_2:58799014-58799033 Msa0610880:intron 15.0%
!! AGATATAAGTAACAAAAATA+TGG - chr4_2:58799079-58799098 None:intergenic 15.0%
!!! TAAACAAAATTTATTTTAGC+AGG + chr4_2:58799238-58799257 Msa0610880:intron 15.0%
!!! AAACAAAATTTATTTTAGCA+GGG + chr4_2:58799239-58799258 Msa0610880:intron 15.0%
!! AAAGCTATTAAAATTAAGTA+AGG + chr4_2:58799301-58799320 Msa0610880:intron 15.0%
!! GTATTAATTAGAATTATGTT+TGG + chr4_2:58799603-58799622 Msa0610880:intron 15.0%
!!! TTATTGTTTTGTATAGATAA+AGG + chr4_2:58800060-58800079 Msa0610880:intron 15.0%
!! TTGATTTACAGATTTATAAA+TGG + chr4_2:58801383-58801402 Msa0610880:intron 15.0%
!! AATAAAAAATTATGAAAGTG+TGG + chr4_2:58801648-58801667 Msa0610880:intron 15.0%
!!! ATATGTTTTTTCTTGTTTTA+AGG + chr4_2:58802046-58802065 Msa0610880:intron 15.0%
!! AGTAACTTTATCAATATTTC+AGG + chr4_2:58794836-58794855 Msa0610880:intron 20.0%
!!! ACATAAAAAAGGCTATATTT+TGG - chr4_2:58795398-58795417 None:intergenic 20.0%
!!! TTTAGGATATAAGATTGAAT+TGG + chr4_2:58795575-58795594 Msa0610880:intron 20.0%
!! TGATAGTTTATACTAACAAA+TGG + chr4_2:58796129-58796148 Msa0610880:intron 20.0%
!! TTAGTTGTAAATATTAGGTT+GGG - chr4_2:58796466-58796485 None:intergenic 20.0%
!!! TTTTATTCTTTGTTCAACTA+AGG + chr4_2:58796800-58796819 Msa0610880:intron 20.0%
!! ATGTCTATTACAAATGAATT+GGG - chr4_2:58797028-58797047 None:intergenic 20.0%
!! TATGTCTATTACAAATGAAT+TGG - chr4_2:58797029-58797048 None:intergenic 20.0%
!!! CAAGTTACAATTTAATTTGT+CGG - chr4_2:58797238-58797257 None:intergenic 20.0%
!! TTTCACTTAATTGATACTAT+TGG + chr4_2:58797639-58797658 Msa0610880:intron 20.0%
!!! ATAAATCTTGTTATTTCTGA+TGG + chr4_2:58797719-58797738 Msa0610880:intron 20.0%
!!! AGAAGTTATTTTTGATTTGA+TGG + chr4_2:58797907-58797926 Msa0610880:intron 20.0%
!!! GTTTCAAAACATACTTTTAT+TGG + chr4_2:58798469-58798488 Msa0610880:intron 20.0%
!!! TTCATTTGCTTTATATTTTC+TGG + chr4_2:58798498-58798517 Msa0610880:intron 20.0%
!! TAATGATGATTGTTACTAAT+TGG + chr4_2:58798712-58798731 Msa0610880:intron 20.0%
!!! GTTTTTTTATGATATCCTAA+AGG + chr4_2:58798811-58798830 Msa0610880:intron 20.0%
!!! TTTTTTATGATATCCTAAAG+GGG + chr4_2:58798813-58798832 Msa0610880:intron 20.0%
!! TGAATACTTCTAAACATAAA+GGG - chr4_2:58799549-58799568 None:intergenic 20.0%
!! TTGAATACTTCTAAACATAA+AGG - chr4_2:58799550-58799569 None:intergenic 20.0%
!!! ATGTTTAGAAGTATTCAATA+TGG + chr4_2:58799552-58799571 Msa0610880:intron 20.0%
!!! TTAATACTACTAATTTGCTT+TGG - chr4_2:58799590-58799609 None:intergenic 20.0%
!! GTTCATGAATTCTTTATATT+TGG + chr4_2:58799645-58799664 Msa0610880:intron 20.0%
!!! TTTTGTATAGATAAAGGTTT+TGG + chr4_2:58800066-58800085 Msa0610880:intron 20.0%
!! TAAGGATTAAATCAATCTAA+GGG - chr4_2:58800272-58800291 None:intergenic 20.0%
!! TAAGGATTAAATCAATCTAA+GGG - chr4_2:58800272-58800291 None:intergenic 20.0%
!! ATGTTTATTCTTTATTCTTC+TGG + chr4_2:58800865-58800884 Msa0610880:intron 20.0%
!! ATAATTGAAGAGAAGAAAAA+TGG + chr4_2:58801309-58801328 Msa0610880:CDS 20.0%
!!! ATATACAGCAGAATTTTTTT+AGG - chr4_2:58801830-58801849 None:intergenic 20.0%
!! GATATATATATTTCCACATT+TGG + chr4_2:58801963-58801982 Msa0610880:intron 20.0%
!! AAAAACATATCAGAAACAAT+GGG - chr4_2:58802036-58802055 None:intergenic 20.0%
!! AAAAAACATATCAGAAACAA+TGG - chr4_2:58802037-58802056 None:intergenic 20.0%
!!! ATTATGGTGTTAAATTGTTA+TGG + chr4_2:58802350-58802369 Msa0610880:three_prime_UTR 20.0%
!! AATCATGAGTAAAATTGTTT+GGG + chr4_2:58802401-58802420 Msa0610880:three_prime_UTR 20.0%
!!! AATTTGGTGTAATGATTTTA+TGG + chr4_2:58802466-58802485 Msa0610880:three_prime_UTR 20.0%
!! TTTTTCTGTTTGAAAGTGAA+TGG - chr4_2:58794283-58794302 None:intergenic 25.0%
! AAATATATAAAATGTACCGG+TGG - chr4_2:58794610-58794629 None:intergenic 25.0%
! TATTTCTTACGATTCTTGTT+AGG + chr4_2:58794625-58794644 Msa0610880:intron 25.0%
! TGAAAAATGAATAATCTGTG+AGG + chr4_2:58794679-58794698 Msa0610880:intron 25.0%
! GAATTAATTGTTACAATGTG+TGG + chr4_2:58794761-58794780 Msa0610880:intron 25.0%
! AATATGCAACATTAACTATC+TGG - chr4_2:58795012-58795031 None:intergenic 25.0%
! ACAGATAAAGAAAGAAAAGT+TGG + chr4_2:58795226-58795245 Msa0610880:intron 25.0%
! CTAGAAGATCAACATAAAAA+AGG - chr4_2:58795409-58795428 None:intergenic 25.0%
!!! CTTTTTTATGTTGATCTTCT+AGG + chr4_2:58795407-58795426 Msa0610880:intron 25.0%
! ATCTTATATCCTAAAGTACA+GGG - chr4_2:58795570-58795589 None:intergenic 25.0%
! AATCTTATATCCTAAAGTAC+AGG - chr4_2:58795571-58795590 None:intergenic 25.0%
! AAAAAGTTGGATTGACAAAT+CGG + chr4_2:58795698-58795717 Msa0610880:intron 25.0%
! TCTAAAAGTAGTTCATAAGA+AGG - chr4_2:58795944-58795963 None:intergenic 25.0%
!!! TTCTTATGAACTACTTTTAG+AGG + chr4_2:58795943-58795962 Msa0610880:intron 25.0%
!!! TCTTATGAACTACTTTTAGA+GGG + chr4_2:58795944-58795963 Msa0610880:intron 25.0%
!! TTCTTTTGCAATGTTACTAT+TGG + chr4_2:58796160-58796179 Msa0610880:intron 25.0%
! GTCTTATATTTAATCGATGT+GGG - chr4_2:58796197-58796216 None:intergenic 25.0%
! CCATATTAGGTCTTTATATT+TGG - chr4_2:58796286-58796305 None:intergenic 25.0%
! CCAAATATAAAGACCTAATA+TGG + chr4_2:58796283-58796302 Msa0610880:intron 25.0%
! ATAGACTATGATACCATATT+AGG - chr4_2:58796299-58796318 None:intergenic 25.0%
! GTTAGTTGTAAATATTAGGT+TGG - chr4_2:58796467-58796486 None:intergenic 25.0%
! ATTTAACACATGCACTTAAT+AGG + chr4_2:58796944-58796963 Msa0610880:intron 25.0%
! AGTATATGAAAAGTTAATCC+AGG + chr4_2:58796989-58797008 Msa0610880:intron 25.0%
! AAAGTTAATCCAGGTTATAA+TGG + chr4_2:58796998-58797017 Msa0610880:intron 25.0%
! AGGAAATCATATTTGTACTA+TGG - chr4_2:58797128-58797147 None:intergenic 25.0%
! ACAAATCAATCATATATCGA+CGG - chr4_2:58797182-58797201 None:intergenic 25.0%
! CAATTAAAGTTGAAGCAAAA+TGG - chr4_2:58797312-58797331 None:intergenic 25.0%
!!! AGGATTTTTTTTCTCTCTAT+AGG + chr4_2:58797372-58797391 Msa0610880:intron 25.0%
!!! TTTGTATTTTTGTGCATTAC+AGG + chr4_2:58797499-58797518 Msa0610880:intron 25.0%
!! CTTTTCCTTGAAGATTAATT+TGG + chr4_2:58797955-58797974 Msa0610880:intron 25.0%
!!! GATTAATTTGGCTTGAAATT+TGG + chr4_2:58797967-58797986 Msa0610880:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG + chr4_2:58798128-58798147 Msa0610880:intron 25.0%
!! TTTTCTAATGGTTTCTCTAA+TGG - chr4_2:58798263-58798282 None:intergenic 25.0%
! AACCATTAGAAAAGATTTAG+AGG + chr4_2:58798270-58798289 Msa0610880:intron 25.0%
! GTTCTATCAAAAACCATATT+TGG - chr4_2:58798310-58798329 None:intergenic 25.0%
! AGATAGATGACTTAATGTTA+TGG + chr4_2:58798557-58798576 Msa0610880:intron 25.0%
! CAAATTTAATCAGTTGAACT+GGG - chr4_2:58798761-58798780 None:intergenic 25.0%
! AAAACATAATTAACCCCTTT+AGG - chr4_2:58798829-58798848 None:intergenic 25.0%
!! AAAGGGGTTAATTATGTTTT+TGG + chr4_2:58798829-58798848 Msa0610880:intron 25.0%
! AAACAAATTTGGATTGAGTA+AGG - chr4_2:58798948-58798967 None:intergenic 25.0%
!! GATAGGGTTAAATATGTTTT+TGG - chr4_2:58799359-58799378 None:intergenic 25.0%
!!! TTTTAGGTTACTTTAGGATA+GGG - chr4_2:58799375-58799394 None:intergenic 25.0%
!!! TTTTTAGGTTACTTTAGGAT+AGG - chr4_2:58799376-58799395 None:intergenic 25.0%
! TATCCTAAAGTAACCTAAAA+AGG + chr4_2:58799375-58799394 Msa0610880:intron 25.0%
!!! ATACCTTTTTAGGTTACTTT+AGG - chr4_2:58799381-58799400 None:intergenic 25.0%
! TAAAGAATTCATGAACATGT+TGG - chr4_2:58799641-58799660 None:intergenic 25.0%
!! TCTTTCTTTTAACATCTAGT+TGG + chr4_2:58799766-58799785 Msa0610880:intron 25.0%
! AATCTAAGGGTCAATAATTA+GGG - chr4_2:58800259-58800278 None:intergenic 25.0%
! GTAAGGATTAAATCAATCTA+AGG - chr4_2:58800273-58800292 None:intergenic 25.0%
! AAAAAATCTAGCAATGTGTA+GGG - chr4_2:58800310-58800329 None:intergenic 25.0%
! AAAAAAATCTAGCAATGTGT+AGG - chr4_2:58800311-58800330 None:intergenic 25.0%
! GATGCAATATTTAGATCTAT+AGG - chr4_2:58800394-58800413 None:intergenic 25.0%
! AATCTAAGGGTCAATAATTA+GGG - chr4_2:58800259-58800278 None:intergenic 25.0%
! GTAAGGATTAAATCAATCTA+AGG - chr4_2:58800273-58800292 None:intergenic 25.0%
! AAAAAATCTTGCAATGTGTA+GGG - chr4_2:58800548-58800567 None:intergenic 25.0%
! AAAAAAATCTTGCAATGTGT+AGG - chr4_2:58800549-58800568 None:intergenic 25.0%
! AATGTAAACAGAAAAACTGT+CGG - chr4_2:58800365-58800384 None:intergenic 25.0%
! GATGCAATATTTAGATCTAT+AGG - chr4_2:58800394-58800413 None:intergenic 25.0%
! GGACAATTATTATTCACTAT+TGG - chr4_2:58800801-58800820 None:intergenic 25.0%
! GTAGCTTAAAAAAAAGACAA+TGG - chr4_2:58800905-58800924 None:intergenic 25.0%
!!! GAAACTTACATCTTTTGTTT+TGG + chr4_2:58801025-58801044 Msa0610880:intron 25.0%
! GATTCAGACAATGATAAAAA+AGG + chr4_2:58801111-58801130 Msa0610880:CDS 25.0%
!!! AGGTATTTTAGTCATAGTTT+TGG + chr4_2:58801230-58801249 Msa0610880:intron 25.0%
! GTATTTAAAAGGATTCCATA+GGG + chr4_2:58801497-58801516 Msa0610880:intron 25.0%
!!! TTCCTTATTTTTCTATCCAT+TGG + chr4_2:58801532-58801551 Msa0610880:intron 25.0%
! GAAGTAGCTTAAGTAAAATA+CGG + chr4_2:58801595-58801614 Msa0610880:intron 25.0%
! AAAACATATCAGAAACAATG+GGG - chr4_2:58802035-58802054 None:intergenic 25.0%
!!! TGTTTTTTCTTGTTTTAAGG+AGG + chr4_2:58802049-58802068 Msa0610880:intron 25.0%
! ATTGTAGAAATATTTACTGC+TGG + chr4_2:58802177-58802196 Msa0610880:exon 25.0%
!!! TTTGAAGCATTTCCATTTTT+GGG + chr4_2:58802231-58802250 Msa0610880:three_prime_UTR 25.0%
! CTCTGTAGATTGTATAATTA+TGG + chr4_2:58802334-58802353 Msa0610880:three_prime_UTR 25.0%
! CAATCATGAGTAAAATTGTT+TGG + chr4_2:58802400-58802419 Msa0610880:three_prime_UTR 25.0%
!! AATTGTTTGGGATATCAATT+TGG + chr4_2:58802413-58802432 Msa0610880:three_prime_UTR 25.0%
! ATATTTCAGGTGTTTAAGCT+AGG + chr4_2:58794849-58794868 Msa0610880:intron 30.0%
! TATCTGTGTTTCTGATAACT+TGG - chr4_2:58795213-58795232 None:intergenic 30.0%
!! CATGGATTTTATTTCTCTGT+TGG - chr4_2:58795292-58795311 None:intergenic 30.0%
! TTTATGTTGATCTTCTAGGA+TGG + chr4_2:58795411-58795430 Msa0610880:intron 30.0%
!! TTATGTTGATCTTCTAGGAT+GGG + chr4_2:58795412-58795431 Msa0610880:intron 30.0%
AGTTCTATAACACTATCACT+AGG + chr4_2:58795516-58795535 Msa0610880:intron 30.0%
ACATCTTACAATACACACTA+CGG - chr4_2:58795645-58795664 None:intergenic 30.0%
TCGCTGTGTTTATTTATCAA+AGG + chr4_2:58795815-58795834 Msa0610880:intron 30.0%
!!! AAAGGCAGTTTTATTGTTGA+CGG + chr4_2:58795833-58795852 Msa0610880:intron 30.0%
AGAAGGAAAAGAAAAGTAGA+AGG - chr4_2:58795927-58795946 None:intergenic 30.0%
AGGAAATACAATGAGTTAGA+AGG + chr4_2:58796066-58796085 Msa0610880:intron 30.0%
! GGTCTTATATTTAATCGATG+TGG - chr4_2:58796198-58796217 None:intergenic 30.0%
CTAACTCATCCTTACAAAAT+TGG - chr4_2:58796262-58796281 None:intergenic 30.0%
TGAGTAGAGTTTATAAAGAG+TGG + chr4_2:58796398-58796417 Msa0610880:intron 30.0%
CTAACTCATCCTTACAAAAA+TGG - chr4_2:58796442-58796461 None:intergenic 30.0%
! CATTTTTGTAAGGATGAGTT+AGG + chr4_2:58796440-58796459 Msa0610880:intron 30.0%
AATGCTGAAATTCACAAGTT+GGG + chr4_2:58796552-58796571 Msa0610880:CDS 30.0%
AAGAAGATTCTGATGTAAGT+AGG + chr4_2:58796902-58796921 Msa0610880:intron 30.0%
! TTGTAACTTGTAGCTTCAAA+AGG + chr4_2:58797248-58797267 Msa0610880:intron 30.0%
AAATGGAACAGCAACATAAA+AGG - chr4_2:58797295-58797314 None:intergenic 30.0%
TTGCTTCAACTTTAATTGTG+TGG + chr4_2:58797314-58797333 Msa0610880:intron 30.0%
!! TATTTTTGTGCATTACAGGA+TGG + chr4_2:58797503-58797522 Msa0610880:intron 30.0%
! TTGAGAATATTTTCCATGCT+AGG - chr4_2:58797551-58797570 None:intergenic 30.0%
ATTGGACTTAATAATTCCCA+AGG + chr4_2:58797657-58797676 Msa0610880:intron 30.0%
!! CTCAACTTTTTCTTTTCCTT+GGG - chr4_2:58797676-58797695 None:intergenic 30.0%
!! TCTCAACTTTTTCTTTTCCT+TGG - chr4_2:58797677-58797696 None:intergenic 30.0%
GGAAAAGAAAAAGTTGAGAA+AGG + chr4_2:58797678-58797697 Msa0610880:intron 30.0%
TGAGAAAGGATAATAGATAG+AGG + chr4_2:58797692-58797711 Msa0610880:intron 30.0%
!! TTGTTATTTCTGATGGATTG+TGG + chr4_2:58797726-58797745 Msa0610880:intron 30.0%
AATAACTTCTTACACTAGTG+AGG - chr4_2:58797897-58797916 None:intergenic 30.0%
TCAAGCCAAATTAATCTTCA+AGG - chr4_2:58797963-58797982 None:intergenic 30.0%
! TCTACCAACTTTTCTACTAT+AGG - chr4_2:58798124-58798143 None:intergenic 30.0%
TTGATCTACTCTTCTTACAA+CGG - chr4_2:58798194-58798213 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG + chr4_2:58798195-58798214 Msa0610880:intron 30.0%
! GTTTCTCTAATGGTTTTCTT+AGG - chr4_2:58798253-58798272 None:intergenic 30.0%
! GACCTCTAAATCTTTTCTAA+TGG - chr4_2:58798275-58798294 None:intergenic 30.0%
! TGGTTTTTGATAGAACACTA+TGG + chr4_2:58798314-58798333 Msa0610880:intron 30.0%
CTATCTATGAAAGAACATGT+AGG - chr4_2:58798543-58798562 None:intergenic 30.0%
TGCAAAATGAGTCAAGTTTA+GGG - chr4_2:58798682-58798701 None:intergenic 30.0%
ATGCAAAATGAGTCAAGTTT+AGG - chr4_2:58798683-58798702 None:intergenic 30.0%
GCAAATTTAATCAGTTGAAC+TGG - chr4_2:58798762-58798781 None:intergenic 30.0%
GTTCAACTGATTAAATTTGC+TGG + chr4_2:58798762-58798781 Msa0610880:intron 30.0%
! TACAAGGTTGCAATTTTGTA+GGG - chr4_2:58798856-58798875 None:intergenic 30.0%
! TTACAAGGTTGCAATTTTGT+AGG - chr4_2:58798857-58798876 None:intergenic 30.0%
AAGTAAGGACTAAACTTACA+AGG - chr4_2:58798872-58798891 None:intergenic 30.0%
!!! GAGTGCAGAAATTTTTTGTA+GGG - chr4_2:58798916-58798935 None:intergenic 30.0%
!!! TGAGTGCAGAAATTTTTTGT+AGG - chr4_2:58798917-58798936 None:intergenic 30.0%
!!! TTTTGCGATATTTTTTTCGC+AGG - chr4_2:58799041-58799060 None:intergenic 30.0%
! CAAGTTTAGAACACTATGAA+AGG - chr4_2:58799176-58799195 None:intergenic 30.0%
AAGTAAGGACTAAACTTAGA+AGG + chr4_2:58799316-58799335 Msa0610880:intron 30.0%
! TTAGAAGGTCGCAATTTTAT+AGG + chr4_2:58799331-58799350 Msa0610880:intron 30.0%
! TAGAAGGTCGCAATTTTATA+GGG + chr4_2:58799332-58799351 Msa0610880:intron 30.0%
! GTAACCTAAAAAGGTATAGA+AGG + chr4_2:58799384-58799403 Msa0610880:intron 30.0%
! TTCACCTTCTATACCTTTTT+AGG - chr4_2:58799391-58799410 None:intergenic 30.0%
! AAAAGGTATAGAAGGTGAAT+TGG + chr4_2:58799392-58799411 Msa0610880:intron 30.0%
!! GTTGTTGGCTCTAAAATATT+TGG - chr4_2:58799465-58799484 None:intergenic 30.0%
ATACTTCAACGTGAATGTTT+AGG - chr4_2:58799679-58799698 None:intergenic 30.0%
AAACATTCACGTTGAAGTAT+TGG + chr4_2:58799679-58799698 Msa0610880:intron 30.0%
! AACATTCACGTTGAAGTATT+GGG + chr4_2:58799680-58799699 Msa0610880:intron 30.0%
GAAAAAATTCTTACTGCCTT+GGG + chr4_2:58799788-58799807 Msa0610880:intron 30.0%
AAAACATGGAAATCATATCG+AGG - chr4_2:58799833-58799852 None:intergenic 30.0%
! TTGCAGATTTTCTCAAACAA+AGG + chr4_2:58799942-58799961 Msa0610880:CDS 30.0%
! AGATTTTCTCAAACAAAGGA+TGG + chr4_2:58799946-58799965 Msa0610880:CDS 30.0%
! GATTTTCTCAAACAAAGGAT+GGG + chr4_2:58799947-58799966 Msa0610880:CDS 30.0%
TGCAAAATATATACCTGTTC+TGG - chr4_2:58799995-58800014 None:intergenic 30.0%
CATGGTACATATTTAGACTT+TGG + chr4_2:58800196-58800215 Msa0610880:intron 30.0%
TACATATTTAGACTTTGGCT+CGG + chr4_2:58800201-58800220 Msa0610880:intron 30.0%
CAATCTAAGGGTCAATAATT+AGG - chr4_2:58800260-58800279 None:intergenic 30.0%
GGGTACATAATATCATTGTA+AGG - chr4_2:58800290-58800309 None:intergenic 30.0%
CAATCTAAGGGTCAATAATT+AGG - chr4_2:58800260-58800279 None:intergenic 30.0%
GGGTACATAATATCATTGTA+AGG - chr4_2:58800290-58800309 None:intergenic 30.0%
! AGAGAGTTGTTTAGAGATTT+TGG + chr4_2:58800726-58800745 Msa0610880:intron 30.0%
! GAGAGTTGTTTAGAGATTTT+GGG + chr4_2:58800727-58800746 Msa0610880:intron 30.0%
!! TAAACATGTAGCTGTTTCTA+TGG - chr4_2:58800852-58800871 None:intergenic 30.0%
! AAGTGATGACTTAACTTTTG+TGG + chr4_2:58800969-58800988 Msa0610880:intron 30.0%
!!! ACTTACATCTTTTGTTTTGG+TGG + chr4_2:58801028-58801047 Msa0610880:intron 30.0%
ACAATTACAATATCTCCTTC+AGG - chr4_2:58801073-58801092 None:intergenic 30.0%
TCATTACAAACCTTGAATCA+GGG - chr4_2:58801171-58801190 None:intergenic 30.0%
TTCATTACAAACCTTGAATC+AGG - chr4_2:58801172-58801191 None:intergenic 30.0%
!!! TAGTTTTGGCTTCTATATTC+AGG + chr4_2:58801244-58801263 Msa0610880:intron 30.0%
!!! AGTTTTGGCTTCTATATTCA+GGG + chr4_2:58801245-58801264 Msa0610880:intron 30.0%
TGTAAATCAAGAACATGTGT+TGG - chr4_2:58801373-58801392 None:intergenic 30.0%
GATAGGAAAAAAGGATTACA+TGG - chr4_2:58801429-58801448 None:intergenic 30.0%
TATTAAATCACCAGACTGAT+AGG - chr4_2:58801446-58801465 None:intergenic 30.0%
GGTATTTAAAAGGATTCCAT+AGG + chr4_2:58801496-58801515 Msa0610880:intron 30.0%
CTCCAATGGATAGAAAAATA+AGG - chr4_2:58801537-58801556 None:intergenic 30.0%
!! CTTATTTTTCTATCCATTGG+AGG + chr4_2:58801535-58801554 Msa0610880:intron 30.0%
TAAGTAAAATACGGTAGCAT+TGG + chr4_2:58801604-58801623 Msa0610880:intron 30.0%
TTTCATACACTACTACCAAA+TGG - chr4_2:58801694-58801713 None:intergenic 30.0%
AACAGTCTAATACTAACATC+AGG - chr4_2:58801766-58801785 None:intergenic 30.0%
!! AATGAGTCAACTTTTTCTGT+TGG + chr4_2:58801852-58801871 Msa0610880:intron 30.0%
!!! TTTTTCTTGTTTTAAGGAGG+AGG + chr4_2:58802052-58802071 Msa0610880:intron 30.0%
CAAAAATGGAAATGCTTCAA+AGG - chr4_2:58802232-58802251 None:intergenic 30.0%
!!! CTTTGAAGCATTTCCATTTT+TGG + chr4_2:58802230-58802249 Msa0610880:three_prime_UTR 30.0%
!! TTGAAGCATTTCCATTTTTG+GGG + chr4_2:58802232-58802251 Msa0610880:three_prime_UTR 30.0%
! TGTATTTTCATCATTCTGAG+TGG + chr4_2:58802276-58802295 Msa0610880:three_prime_UTR 30.0%
TTATACAATCTACAGAGCAT+TGG - chr4_2:58802331-58802350 None:intergenic 30.0%
! AAACTTTTCAAACGCGAGAA+TGG + chr4_2:58794300-58794319 Msa0610880:exon 35.0%
! AACTTTTCAAACGCGAGAAT+GGG + chr4_2:58794301-58794320 Msa0610880:exon 35.0%
!!! GTTTTGAAGCGATTTGAGAA+TGG - chr4_2:58794404-58794423 None:intergenic 35.0%
! ATTCCTAATTCTGTGTTGCT+CGG + chr4_2:58794550-58794569 Msa0610880:CDS 35.0%
ATCTGTGAGGTTAGATGAAT+TGG + chr4_2:58794692-58794711 Msa0610880:intron 35.0%
AATTGGATCTGAGCTTGATT+AGG + chr4_2:58794709-58794728 Msa0610880:intron 35.0%
TGTGGAATCTGTTCTACATA+AGG + chr4_2:58794779-58794798 Msa0610880:intron 35.0%
!! AGAAGGCATTATTTGTGCAA+TGG + chr4_2:58794917-58794936 Msa0610880:CDS 35.0%
!! TATTTTGAATGAGTGAAGCC+AGG + chr4_2:58795028-58795047 Msa0610880:intron 35.0%
GTGTGTGTTTATTCGAGTAT+GGG - chr4_2:58795084-58795103 None:intergenic 35.0%
TGTGTGTGTTTATTCGAGTA+TGG - chr4_2:58795085-58795104 None:intergenic 35.0%
CAATTCTGTTCAAACTAGTC+TGG - chr4_2:58795171-58795190 None:intergenic 35.0%
AAGTTGGATCACGAATTCAA+TGG + chr4_2:58795242-58795261 Msa0610880:intron 35.0%
GTATGTTGAAGAACTTCATG+AGG + chr4_2:58795350-58795369 Msa0610880:intron 35.0%
TATACTTTATTAGCTGCACG+TGG + chr4_2:58795472-58795491 Msa0610880:intron 35.0%
GTGTTATAGAACTAAGTGAC+TGG - chr4_2:58795509-58795528 None:intergenic 35.0%
TATCTTCTACCCTGTACTTT+AGG + chr4_2:58795558-58795577 Msa0610880:intron 35.0%
TAAATACCAGGCAGTCTATT+TGG - chr4_2:58795612-58795631 None:intergenic 35.0%
GGTTGGAATTACTAAATACC+AGG - chr4_2:58795624-58795643 None:intergenic 35.0%
!! AATCCAACTTTTTCCAATGC+TGG - chr4_2:58795691-58795710 None:intergenic 35.0%
TAGATTAGATCGCTGATAAC+TGG - chr4_2:58795746-58795765 None:intergenic 35.0%
!! ATGAACTACTTTTAGAGGGT+TGG + chr4_2:58795948-58795967 Msa0610880:intron 35.0%
CCACTAGCTAAATGAAAGTA+CGG + chr4_2:58796026-58796045 Msa0610880:intron 35.0%
! CACTAGCTAAATGAAAGTAC+GGG + chr4_2:58796027-58796046 Msa0610880:intron 35.0%
AATGAGTTAGAAGGCAGTTA+AGG + chr4_2:58796075-58796094 Msa0610880:intron 35.0%
TATTTAATCGATGTGGGAGT+TGG - chr4_2:58796191-58796210 None:intergenic 35.0%
TGACTAGAGTTTAGAAAGAG+CGG + chr4_2:58796218-58796237 Msa0610880:intron 35.0%
!! AAAATTGGCTTGTAAGGTGA+GGG - chr4_2:58796247-58796266 None:intergenic 35.0%
!! CCTTACAAAATTGGCTTGTA+AGG - chr4_2:58796253-58796272 None:intergenic 35.0%
! CCTTACAAGCCAATTTTGTA+AGG + chr4_2:58796250-58796269 Msa0610880:intron 35.0%
! GGTATCATAGTCTATCGATT+TGG + chr4_2:58796304-58796323 Msa0610880:intron 35.0%
CATGCGTGTATATAAATGGT+GGG - chr4_2:58796333-58796352 None:intergenic 35.0%
TCATGCGTGTATATAAATGG+TGG - chr4_2:58796334-58796353 None:intergenic 35.0%
GCTTCATGCGTGTATATAAA+TGG - chr4_2:58796337-58796356 None:intergenic 35.0%
! AAAAATGGCTTGTAAGGTGA+GGG - chr4_2:58796427-58796446 None:intergenic 35.0%
! CCTTACAAAAATGGCTTGTA+AGG - chr4_2:58796433-58796452 None:intergenic 35.0%
!!! CCTTACAAGCCATTTTTGTA+AGG + chr4_2:58796430-58796449 Msa0610880:intron 35.0%
GAATGCTGAAATTCACAAGT+TGG + chr4_2:58796551-58796570 Msa0610880:CDS 35.0%
TTGTCCAACATTATCCAACT+GGG - chr4_2:58796604-58796623 None:intergenic 35.0%
TGTTGGACAACAATTAGCAT+TGG + chr4_2:58796614-58796633 Msa0610880:CDS 35.0%
GAAGGACGAAAAAAATAGCT+TGG - chr4_2:58796850-58796869 None:intergenic 35.0%
TGAAGATTCCACATTCGTAA+CGG - chr4_2:58796880-58796899 None:intergenic 35.0%
AAGTAGGTAGTAGTATCACA+AGG + chr4_2:58796918-58796937 Msa0610880:intron 35.0%
AACCAAAGTATATTCCCACT+AGG - chr4_2:58797080-58797099 None:intergenic 35.0%
! TTCTGAAGATTCAGCCTAAA+TGG + chr4_2:58797205-58797224 Msa0610880:intron 35.0%
TCTGAAGATTCAGCCTAAAT+GGG + chr4_2:58797206-58797225 Msa0610880:intron 35.0%
CCTCAAGCAAGAAAAACAAA+AGG - chr4_2:58797355-58797374 None:intergenic 35.0%
!!! CCTTTTGTTTTTCTTGCTTG+AGG + chr4_2:58797352-58797371 Msa0610880:intron 35.0%
ATAGGATAGTAATTGCACCA+TGG + chr4_2:58797390-58797409 Msa0610880:intron 35.0%
!!! ACTGTAATTTTGAAACGCCA+TGG - chr4_2:58797410-58797429 None:intergenic 35.0%
AGCACCTATAGTAGAAAAGT+TGG + chr4_2:58798117-58798136 Msa0610880:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG + chr4_2:58798137-58798156 Msa0610880:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG + chr4_2:58798142-58798161 Msa0610880:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG + chr4_2:58798198-58798217 Msa0610880:intron 35.0%
AGATTTAGAGGTCAATGAGT+TGG + chr4_2:58798282-58798301 Msa0610880:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG + chr4_2:58798294-58798313 Msa0610880:intron 35.0%
! TAGTAGATGACATGTTGACT+TGG + chr4_2:58798606-58798625 Msa0610880:intron 35.0%
!! TTAAATTTGCTGGTCTACTC+TGG + chr4_2:58798772-58798791 Msa0610880:intron 35.0%
!! GAGTTGATGGGTGAAATAAA+GGG + chr4_2:58799423-58799442 Msa0610880:intron 35.0%
!! AGTTGATGGGTGAAATAAAG+GGG + chr4_2:58799424-58799443 Msa0610880:intron 35.0%
ATATGCGAAATATGCAGTCA+GGG - chr4_2:58799514-58799533 None:intergenic 35.0%
AATATGCGAAATATGCAGTC+AGG - chr4_2:58799515-58799534 None:intergenic 35.0%
GGAAAAAATTCTTACTGCCT+TGG + chr4_2:58799787-58799806 Msa0610880:intron 35.0%
! AATCAACAGCACTGAAAACA+TGG - chr4_2:58799847-58799866 None:intergenic 35.0%
GAGACATTGAATGCACATAT+TGG - chr4_2:58800156-58800175 None:intergenic 35.0%
! AGTTGTTTAGAGATTTTGGG+AGG + chr4_2:58800730-58800749 Msa0610880:intron 35.0%
TCTGTAAAAATGCACTCTTG+AGG - chr4_2:58801007-58801026 None:intergenic 35.0%
ATGATAAAAAAGGCTCACCT+TGG + chr4_2:58801121-58801140 Msa0610880:CDS 35.0%
CATTACAAACCTTGAATCAG+GGG - chr4_2:58801170-58801189 None:intergenic 35.0%
ACTGTTTATGCTCTGTTTGA+AGG + chr4_2:58801210-58801229 Msa0610880:intron 35.0%
!!! ATCCTTTTTTCCTATCAGTC+TGG + chr4_2:58801433-58801452 Msa0610880:intron 35.0%
TATAAATCATCACCACGTTC+AGG - chr4_2:58801719-58801738 None:intergenic 35.0%
AGCATGTCTGTCTTTATAGA+TGG + chr4_2:58801800-58801819 Msa0610880:intron 35.0%
ATCGATGAAACATCCAAATG+TGG - chr4_2:58801979-58801998 None:intergenic 35.0%
! TTCATCGATTGTGTATCAAG+TGG + chr4_2:58801990-58802009 Msa0610880:intron 35.0%
TTTCAATTCCTTCAACCTTC+AGG - chr4_2:58802132-58802151 None:intergenic 35.0%
!! TGAAGCATTTCCATTTTTGG+GGG + chr4_2:58802233-58802252 Msa0610880:three_prime_UTR 35.0%
GAGACATTATCATATCCCAA+TGG - chr4_2:58802307-58802326 None:intergenic 35.0%
! ACTTTTCAAACGCGAGAATG+GGG + chr4_2:58794302-58794321 Msa0610880:exon 40.0%
! CGTATTTCTTCAGGTTCGAA+GGG - chr4_2:58794345-58794364 None:intergenic 40.0%
CCTTCGAACCTGAAGAAATA+CGG + chr4_2:58794343-58794362 Msa0610880:CDS 40.0%
TTCCTTTATACTCCGTTGCT+TGG + chr4_2:58794368-58794387 Msa0610880:CDS 40.0%
TCCTTTATACTCCGTTGCTT+GGG + chr4_2:58794369-58794388 Msa0610880:CDS 40.0%
!! GCGATTTGAGAATGGATTGT+GGG - chr4_2:58794396-58794415 None:intergenic 40.0%
!! AGCGATTTGAGAATGGATTG+TGG - chr4_2:58794397-58794416 None:intergenic 40.0%
CAGAATTAGGAATACCACTG+CGG - chr4_2:58794543-58794562 None:intergenic 40.0%
! TTCCTAATTCTGTGTTGCTC+GGG + chr4_2:58794551-58794570 Msa0610880:CDS 40.0%
TTCCGAGTTGCCTTATAGAA+TGG + chr4_2:58794878-58794897 Msa0610880:CDS 40.0%
TGCCATTCTATAAGGCAACT+CGG - chr4_2:58794883-58794902 None:intergenic 40.0%
AAATAATGCCTTCTCCGTTG+GGG - chr4_2:58794911-58794930 None:intergenic 40.0%
CAAATAATGCCTTCTCCGTT+GGG - chr4_2:58794912-58794931 None:intergenic 40.0%
ACAAATAATGCCTTCTCCGT+TGG - chr4_2:58794913-58794932 None:intergenic 40.0%
AAAGAAGACCTGCAACACTT+TGG - chr4_2:58794948-58794967 None:intergenic 40.0%
CCAATAGCGAAAAAAATGCC+TGG - chr4_2:58795049-58795068 None:intergenic 40.0%
!!! CCAGGCATTTTTTTCGCTAT+TGG + chr4_2:58795046-58795065 Msa0610880:intron 40.0%
!!! TTTTTTCGCTATTGGCCTAG+TGG + chr4_2:58795054-58795073 Msa0610880:intron 40.0%
GTGTTTATTCGAGTATGGGT+AGG - chr4_2:58795080-58795099 None:intergenic 40.0%
TCGAATAAACACACACACAG+AGG + chr4_2:58795088-58795107 Msa0610880:intron 40.0%
AATAAACACACACACAGAGG+AGG + chr4_2:58795091-58795110 Msa0610880:intron 40.0%
ATAAACACACACACAGAGGA+GGG + chr4_2:58795092-58795111 Msa0610880:intron 40.0%
GTGGTTACATCCTAATGGTT+TGG - chr4_2:58795135-58795154 None:intergenic 40.0%
AGACAGCTACTCATACTTCA+TGG - chr4_2:58795310-58795329 None:intergenic 40.0%
AGTAGCTGTCTAGTATGTTG+AGG + chr4_2:58795319-58795338 Msa0610880:intron 40.0%
GATAAACCAAATAGACTGCC+TGG + chr4_2:58795603-58795622 Msa0610880:intron 40.0%
CTTACAATACACACTACGGT+TGG - chr4_2:58795641-58795660 None:intergenic 40.0%
!! GATTTTGATCTAGCCAGCAT+TGG + chr4_2:58795675-58795694 Msa0610880:intron 40.0%
! TAGCCAGCATTGGAAAAAGT+TGG + chr4_2:58795685-58795704 Msa0610880:intron 40.0%
GCAAGCAATGTTCTTCAATG+TGG + chr4_2:58795878-58795897 Msa0610880:intron 40.0%
!! CATGTTCTGGGAATTTACAG+TGG - chr4_2:58795995-58796014 None:intergenic 40.0%
CCGTACTTTCATTTAGCTAG+TGG - chr4_2:58796029-58796048 None:intergenic 40.0%
GCTCTTTCTAAACTCTAGTC+AGG - chr4_2:58796219-58796238 None:intergenic 40.0%
!! AAATTGGCTTGTAAGGTGAG+GGG - chr4_2:58796246-58796265 None:intergenic 40.0%
!! CAAAATTGGCTTGTAAGGTG+AGG - chr4_2:58796248-58796267 None:intergenic 40.0%
! AAAATGGCTTGTAAGGTGAG+GGG - chr4_2:58796426-58796445 None:intergenic 40.0%
! CAAAAATGGCTTGTAAGGTG+AGG - chr4_2:58796428-58796447 None:intergenic 40.0%
! AATTCACAAGTTGGGTCTGA+AGG + chr4_2:58796560-58796579 Msa0610880:CDS 40.0%
GTTGTCCAACATTATCCAAC+TGG - chr4_2:58796605-58796624 None:intergenic 40.0%
! GCATTGGCATTCAACAATGA+TGG + chr4_2:58796630-58796649 Msa0610880:CDS 40.0%
ATTCGTAACGGTTTGACTGA+AGG - chr4_2:58796868-58796887 None:intergenic 40.0%
TTGGGCTTACCATTATAACC+TGG - chr4_2:58797010-58797029 None:intergenic 40.0%
GGGACAAACAAATGGTTACA+CGG - chr4_2:58797053-58797072 None:intergenic 40.0%
AGTATATTCCCACTAGGTCA+GGG - chr4_2:58797074-58797093 None:intergenic 40.0%
AAGTATATTCCCACTAGGTC+AGG - chr4_2:58797075-58797094 None:intergenic 40.0%
GACCTAGTGGGAATATACTT+TGG + chr4_2:58797075-58797094 Msa0610880:intron 40.0%
GGTTCGTGTTAACAGATACA+AGG - chr4_2:58797148-58797167 None:intergenic 40.0%
! ATATCGACGGCAATGTTTTC+AGG - chr4_2:58797169-58797188 None:intergenic 40.0%
ATTACAGGATGGCAGTCTAA+GGG + chr4_2:58797514-58797533 Msa0610880:intron 40.0%
CTTCACAGTAGAATGAGCAT+TGG - chr4_2:58797579-58797598 None:intergenic 40.0%
CAATGCTCATTCTACTGTGA+AGG + chr4_2:58797577-58797596 Msa0610880:CDS 40.0%
! CTGTGAAGGACTTGCATTTT+AGG + chr4_2:58797591-58797610 Msa0610880:CDS 40.0%
!! TGGCAAGTTGATTGTCTCTT+TGG + chr4_2:58797782-58797801 Msa0610880:CDS 40.0%
!! GGCAAGTTGATTGTCTCTTT+GGG + chr4_2:58797783-58797802 Msa0610880:CDS 40.0%
! AAGTTGATTGTCTCTTTGGG+AGG + chr4_2:58797786-58797805 Msa0610880:CDS 40.0%
TAGACTTGACTAGACAGGAT+AGG + chr4_2:58798059-58798078 Msa0610880:intron 40.0%
TGACTAGACAGGATAGGATT+AGG + chr4_2:58798065-58798084 Msa0610880:intron 40.0%
TCTTCTTACAACGGCATCTA+CGG - chr4_2:58798185-58798204 None:intergenic 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + chr4_2:58798223-58798242 Msa0610880:intron 40.0%
!! TAGATGACATGTTGACTTGG+TGG + chr4_2:58798609-58798628 Msa0610880:intron 40.0%
CAAGTTTAGGGAAAACAAGC+TGG - chr4_2:58798670-58798689 None:intergenic 40.0%
!!! AGAAGGTGAATTGGTTTTCC+TGG + chr4_2:58799401-58799420 Msa0610880:intron 40.0%
!!! ATTGGTTTTCCTGGAGTTGA+TGG + chr4_2:58799410-58799429 Msa0610880:intron 40.0%
!! TTGGTTTTCCTGGAGTTGAT+GGG + chr4_2:58799411-58799430 Msa0610880:intron 40.0%
TTATTTCACCCATCAACTCC+AGG - chr4_2:58799422-58799441 None:intergenic 40.0%
!! GGAGTTGATGGGTGAAATAA+AGG + chr4_2:58799422-58799441 Msa0610880:intron 40.0%
TGGGTGAAATAAAGGGGATA+AGG + chr4_2:58799430-58799449 Msa0610880:intron 40.0%
GTGAAATAAAGGGGATAAGG+AGG + chr4_2:58799433-58799452 Msa0610880:intron 40.0%
ATAAAGGGGATAAGGAGGTT+AGG + chr4_2:58799438-58799457 Msa0610880:intron 40.0%
CTGTTCTGGCAGCAATATAT+AGG - chr4_2:58799981-58800000 None:intergenic 40.0%
CTATATATTGCTGCCAGAAC+AGG + chr4_2:58799979-58799998 Msa0610880:CDS 40.0%
TGACCTGGAATACACAAACA+TGG + chr4_2:58800097-58800116 Msa0610880:CDS 40.0%
GACCTGGAATACACAAACAT+GGG + chr4_2:58800098-58800117 Msa0610880:CDS 40.0%
TTCCCATGTTTGTGTATTCC+AGG - chr4_2:58800103-58800122 None:intergenic 40.0%
GGAATACACAAACATGGGAA+AGG + chr4_2:58800103-58800122 Msa0610880:CDS 40.0%
! ATGAACGAGAGGGATTTTGA+AGG + chr4_2:58800676-58800695 Msa0610880:intron 40.0%
!! GGATTTTGAAGGTGGTGTTA+TGG + chr4_2:58800687-58800706 Msa0610880:intron 40.0%
!!! TTTTGAAGGTGGTGTTATGG+TGG + chr4_2:58800690-58800709 Msa0610880:intron 40.0%
!! ACATGTAGCTGTTTCTATGG+AGG - chr4_2:58800849-58800868 None:intergenic 40.0%
TATTCTTCTGGTACTTGCAG+TGG + chr4_2:58800877-58800896 Msa0610880:intron 40.0%
TTAAGCTACCTGAAAGCAAG+TGG + chr4_2:58800916-58800935 Msa0610880:intron 40.0%
! TTACATTGCCACTTGCTTTC+AGG - chr4_2:58800927-58800946 None:intergenic 40.0%
! TAGCATTTTCCCCTGATTCA+AGG + chr4_2:58801158-58801177 Msa0610880:CDS 40.0%
CACCAGACTGATAGGAAAAA+AGG - chr4_2:58801438-58801457 None:intergenic 40.0%
! CCTTGATTGTTAGAGCATCT+CGG + chr4_2:58801468-58801487 Msa0610880:intron 40.0%
! ATTGTTAGAGCATCTCGGAT+GGG + chr4_2:58801473-58801492 Msa0610880:intron 40.0%
GAACATGTTCATTCTCCCTA+TGG - chr4_2:58801515-58801534 None:intergenic 40.0%
! GCAATTAACTTTGCCACTTC+AGG - chr4_2:58801563-58801582 None:intergenic 40.0%
AGTGCATTGTAGAGACCATT+TGG + chr4_2:58801676-58801695 Msa0610880:intron 40.0%
AGTAAGCAGCTATTGCAAGT+AGG - chr4_2:58802108-58802127 None:intergenic 40.0%
AATAGCTGCTTACTTCCTGA+AGG + chr4_2:58802114-58802133 Msa0610880:CDS 40.0%
CACTAAACTTCCCCCAAAAA+TGG - chr4_2:58802246-58802265 None:intergenic 40.0%
ATTCTGAGTGGTTGTACCAT+TGG + chr4_2:58802288-58802307 Msa0610880:three_prime_UTR 40.0%
TTCTGAGTGGTTGTACCATT+GGG + chr4_2:58802289-58802308 Msa0610880:three_prime_UTR 40.0%
! CCGTATTTCTTCAGGTTCGA+AGG - chr4_2:58794346-58794365 None:intergenic 45.0%
AAGGAACGCCGTATTTCTTC+AGG - chr4_2:58794354-58794373 None:intergenic 45.0%
ACCCAAGCAACGGAGTATAA+AGG - chr4_2:58794373-58794392 None:intergenic 45.0%
GTCGGAGGAATGATCATCAT+CGG - chr4_2:58794434-58794453 None:intergenic 45.0%
TTTATGATCGGCAGCATCGT+CGG - chr4_2:58794452-58794471 None:intergenic 45.0%
TGCCGATCATAAATCTTCGC+CGG + chr4_2:58794459-58794478 Msa0610880:CDS 45.0%
CTCCGGCGAAGATTTATGAT+CGG - chr4_2:58794464-58794483 None:intergenic 45.0%
TCATAAATCTTCGCCGGAGA+CGG + chr4_2:58794465-58794484 Msa0610880:CDS 45.0%
! GGGTGAAGTGCCATTCTATA+AGG - chr4_2:58794891-58794910 None:intergenic 45.0%
!! TGGAAAAGCCAAAGTGTTGC+AGG + chr4_2:58794937-58794956 Msa0610880:CDS 45.0%
TAAACACACACACAGAGGAG+GGG + chr4_2:58795093-58795112 Msa0610880:intron 45.0%
ATCCTCACAGCCAAACCATT+AGG + chr4_2:58795122-58795141 Msa0610880:intron 45.0%
! ATCCTAATGGTTTGGCTGTG+AGG - chr4_2:58795127-58795146 None:intergenic 45.0%
ACCATTAGGATGTAACCACG+AGG + chr4_2:58795136-58795155 Msa0610880:intron 45.0%
TCCTCGTGGTTACATCCTAA+TGG - chr4_2:58795140-58795159 None:intergenic 45.0%
ACAGAATTGTAAGCCGTGCT+TGG + chr4_2:58795182-58795201 Msa0610880:intron 45.0%
CAGAATTGTAAGCCGTGCTT+GGG + chr4_2:58795183-58795202 Msa0610880:intron 45.0%
!! ACTTTTAGAGGGTTGGCAAC+TGG + chr4_2:58795955-58795974 Msa0610880:intron 45.0%
ATTTAGCTAGTGGCAGCACT+AGG - chr4_2:58796019-58796038 None:intergenic 45.0%
GTTAAGGTCATGTGTTGCGT+TGG + chr4_2:58796091-58796110 Msa0610880:intron 45.0%
! GCGTGTATATAAATGGTGGG+TGG - chr4_2:58796330-58796349 None:intergenic 45.0%
TCAAACCATCTGCATGTGCA+AGG - chr4_2:58796516-58796535 None:intergenic 45.0%
CACATGCAGATGGTTTGACT+GGG + chr4_2:58796518-58796537 Msa0610880:intron 45.0%
CTCACCCAGTTGGATAATGT+TGG + chr4_2:58796597-58796616 Msa0610880:CDS 45.0%
CAGTCAAACCGTTACGAATG+TGG + chr4_2:58796869-58796888 Msa0610880:intron 45.0%
TAGGTCAGGGGACAAACAAA+TGG - chr4_2:58797061-58797080 None:intergenic 45.0%
GTATATTCCCACTAGGTCAG+GGG - chr4_2:58797073-58797092 None:intergenic 45.0%
GAAGATTCAGCCTAAATGGG+TGG + chr4_2:58797209-58797228 Msa0610880:intron 45.0%
CATTACAGGATGGCAGTCTA+AGG + chr4_2:58797513-58797532 Msa0610880:intron 45.0%
!! GCAGTCTAAGGGTTTTCAAG+TGG + chr4_2:58797525-58797544 Msa0610880:CDS 45.0%
!! TGATGGATTGTGGCTTAGTC+TGG + chr4_2:58797736-58797755 Msa0610880:intron 45.0%
! TGTCTGTCTTGCAGTTCTGA+TGG + chr4_2:58797762-58797781 Msa0610880:intron 45.0%
! TTGATTGTCTCTTTGGGAGG+TGG + chr4_2:58797789-58797808 Msa0610880:CDS 45.0%
CAGGATAGACTTGACTAGAC+AGG + chr4_2:58798054-58798073 Msa0610880:intron 45.0%
TGACACCATTAGAGAGAGAG+TGG + chr4_2:58798090-58798109 Msa0610880:intron 45.0%
GACACCATTAGAGAGAGAGT+GGG + chr4_2:58798091-58798110 Msa0610880:intron 45.0%
ACACCATTAGAGAGAGAGTG+GGG + chr4_2:58798092-58798111 Msa0610880:intron 45.0%
CTTCTTACAACGGCATCTAC+GGG - chr4_2:58798184-58798203 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG + chr4_2:58798207-58798226 Msa0610880:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG + chr4_2:58798217-58798236 Msa0610880:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr4_2:58798363-58798382 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr4_2:58798364-58798383 None:intergenic 45.0%
TAATTGGTCAGACCAGCATG+CGG + chr4_2:58798728-58798747 Msa0610880:intron 45.0%
TCAAACAAAGGATGGGACTC+AGG + chr4_2:58799954-58799973 Msa0610880:CDS 45.0%
!!! GTTTTGGAAGCATTGTGACC+TGG + chr4_2:58800082-58800101 Msa0610880:CDS 45.0%
GCATTCAATGTCTCAGCTGA+TGG + chr4_2:58800162-58800181 Msa0610880:CDS 45.0%
CTCAGCTGATGGAAAGTTTC+TGG + chr4_2:58800173-58800192 Msa0610880:CDS 45.0%
!! CTGATGGAAAGTTTCTGGCA+TGG + chr4_2:58800178-58800197 Msa0610880:CDS 45.0%
!! TTTAGACTTTGGCTCGGTTG+AGG + chr4_2:58800207-58800226 Msa0610880:intron 45.0%
GTTAAGCAACAGTGTGCTTG+TGG + chr4_2:58800414-58800433 Msa0610880:intron 45.0%
GTTAAGCAACAGTGTGCTTG+TGG + chr4_2:58800414-58800433 Msa0610880:intron 45.0%
!! AACGAGAGGGATTTTGAAGG+TGG + chr4_2:58800679-58800698 Msa0610880:intron 45.0%
TTTGGGAGGAATAACGTGTG+CGG + chr4_2:58800744-58800763 Msa0610880:intron 45.0%
GTCAAACATGTGGTTCACTG+TGG - chr4_2:58800822-58800841 None:intergenic 45.0%
TGGAGGACAAGTCAAACATG+TGG - chr4_2:58800832-58800851 None:intergenic 45.0%
AATGCACTCTTGAGGTCTGA+AGG - chr4_2:58800999-58801018 None:intergenic 45.0%
! TTTGGTGGCTTGATATGCAG+CGG + chr4_2:58801043-58801062 Msa0610880:intron 45.0%
CTAAAGCAGTTACTACGCCA+AGG - chr4_2:58801141-58801160 None:intergenic 45.0%
GGCTTCTATATTCAGGGCAT+TGG + chr4_2:58801251-58801270 Msa0610880:intron 45.0%
TATCCATGGATTCAAGTGCG+AGG + chr4_2:58801280-58801299 Msa0610880:CDS 45.0%
ATCCATGGATTCAAGTGCGA+GGG + chr4_2:58801281-58801300 Msa0610880:CDS 45.0%
CCGAGATGCTCTAACAATCA+AGG - chr4_2:58801471-58801490 None:intergenic 45.0%
! GATTGTTAGAGCATCTCGGA+TGG + chr4_2:58801472-58801491 Msa0610880:intron 45.0%
! TTGTTAGAGCATCTCGGATG+GGG + chr4_2:58801474-58801493 Msa0610880:intron 45.0%
!! CTCGGATGGGGGTATTTAAA+AGG + chr4_2:58801486-58801505 Msa0610880:intron 45.0%
GTGTATGAAACTCCTGAACG+TGG + chr4_2:58801704-58801723 Msa0610880:intron 45.0%
ACAATGGGGTCATGTGCTAT+AGG - chr4_2:58802021-58802040 None:intergenic 45.0%
GCTTACTTCCTGAAGGTTGA+AGG + chr4_2:58802121-58802140 Msa0610880:CDS 45.0%
!! TAAAATAATAAATTAATGAA+TGG - chr4_2:58796785-58796804 None:intergenic 5.0%
! TCTTCAGGTTCGAAGGGTCT+GGG - chr4_2:58794339-58794358 None:intergenic 50.0%
! TTCTTCAGGTTCGAAGGGTC+TGG - chr4_2:58794340-58794359 None:intergenic 50.0%
GGAGGAATGATCATCATCGG+CGG - chr4_2:58794431-58794450 None:intergenic 50.0%
GGCAAACACGACGTACTTTC+CGG - chr4_2:58794503-58794522 None:intergenic 50.0%
! GGAAAGTACGTCGTGTTTGC+CGG + chr4_2:58794502-58794521 Msa0610880:CDS 50.0%
TGCCCGAGCAACACAGAATT+AGG - chr4_2:58794556-58794575 None:intergenic 50.0%
CGGGCATTTCGATGTTGCAT+CGG + chr4_2:58794570-58794589 Msa0610880:CDS 50.0%
GGATTCTCTCTCTGATCCAC+CGG + chr4_2:58794591-58794610 Msa0610880:CDS 50.0%
AGAATGGCACTTCACCCCAA+CGG + chr4_2:58794894-58794913 Msa0610880:CDS 50.0%
AAACACACACACAGAGGAGG+GGG + chr4_2:58795094-58795113 Msa0610880:intron 50.0%
TAACTTGGTCAGCCCAAGCA+CGG - chr4_2:58795198-58795217 None:intergenic 50.0%
! AGGGTTGGCAACTGGATGAT+TGG + chr4_2:58795963-58795982 Msa0610880:intron 50.0%
GCAGCACTAGGACATGTTCT+GGG - chr4_2:58796007-58796026 None:intergenic 50.0%
GTACGGGTTTACTGCATTGC+AGG + chr4_2:58796043-58796062 Msa0610880:intron 50.0%
GCATGAAGCCCAATAGTGCT+GGG + chr4_2:58796348-58796367 Msa0610880:intron 50.0%
CATGAAGCCCAATAGTGCTG+GGG + chr4_2:58796349-58796368 Msa0610880:intron 50.0%
! ATGAAGCCCAATAGTGCTGG+GGG + chr4_2:58796350-58796369 Msa0610880:intron 50.0%
CTATGCCTTGCACATGCAGA+TGG + chr4_2:58796508-58796527 Msa0610880:intron 50.0%
GCACATGCAGATGGTTTGAC+TGG + chr4_2:58796517-58796536 Msa0610880:intron 50.0%
AGAGAAGCTTCTCACCCAGT+TGG + chr4_2:58796587-58796606 Msa0610880:CDS 50.0%
GATGGTACTACACTAGCTGC+TGG + chr4_2:58796648-58796667 Msa0610880:CDS 50.0%
TTGTTTGTCCCCTGACCTAG+TGG + chr4_2:58797062-58797081 Msa0610880:intron 50.0%
TGTTTGTCCCCTGACCTAGT+GGG + chr4_2:58797063-58797082 Msa0610880:intron 50.0%
! TTGTCGGTTGCCACCCATTT+AGG - chr4_2:58797222-58797241 None:intergenic 50.0%
!!! GGTTTTCAAGTGGCCTAGCA+TGG + chr4_2:58797535-58797554 Msa0610880:CDS 50.0%
! ATTGTCTCTTTGGGAGGTGG+CGG + chr4_2:58797792-58797811 Msa0610880:CDS 50.0%
AAACATCCCAAACCCTGCAG+GGG - chr4_2:58797818-58797837 None:intergenic 50.0%
GAAACATCCCAAACCCTGCA+GGG - chr4_2:58797819-58797838 None:intergenic 50.0%
AGAAACATCCCAAACCCTGC+AGG - chr4_2:58797820-58797839 None:intergenic 50.0%
CACCATTAGAGAGAGAGTGG+GGG + chr4_2:58798093-58798112 Msa0610880:intron 50.0%
TACCCCCACTCTCTCTCTAA+TGG - chr4_2:58798098-58798117 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr4_2:58798359-58798378 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr4_2:58798365-58798384 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr4_2:58798362-58798381 Msa0610880:intron 50.0%
AATTGGTCAGACCAGCATGC+GGG + chr4_2:58798729-58798748 Msa0610880:intron 50.0%
! GGAAGGAGGGAGTATGTTGT+TGG - chr4_2:58799480-58799499 None:intergenic 50.0%
GGCTTGTAACAAGGGAAGGA+GGG - chr4_2:58799493-58799512 None:intergenic 50.0%
TCAGGGCTTGTAACAAGGGA+AGG - chr4_2:58799497-58799516 None:intergenic 50.0%
GCAGTCAGGGCTTGTAACAA+GGG - chr4_2:58799501-58799520 None:intergenic 50.0%
TGCAGTCAGGGCTTGTAACA+AGG - chr4_2:58799502-58799521 None:intergenic 50.0%
TTACTGCCTTGGGCGAACAT+GGG + chr4_2:58799798-58799817 Msa0610880:intron 50.0%
CATATTCCCATGTTCGCCCA+AGG - chr4_2:58799807-58799826 None:intergenic 50.0%
CTTGGGCGAACATGGGAATA+TGG + chr4_2:58799805-58799824 Msa0610880:intron 50.0%
TGTGCTTGTGGATGAACGAG+AGG + chr4_2:58800426-58800445 Msa0610880:intron 50.0%
GTGCTTGTGGATGAACGAGA+GGG + chr4_2:58800427-58800446 Msa0610880:intron 50.0%
TGGATGAACGAGAGGGACTT+TGG + chr4_2:58800434-58800453 Msa0610880:intron 50.0%
TGTGCTTGTGGATGAACGAG+AGG + chr4_2:58800426-58800445 Msa0610880:intron 50.0%
GTGCTTGTGGATGAACGAGA+GGG + chr4_2:58800427-58800446 Msa0610880:intron 50.0%
!! GTGTTATGGTGGACAGTGAG+TGG + chr4_2:58800701-58800720 Msa0610880:intron 50.0%
ATATGCAGCGGAACACCTGA+AGG + chr4_2:58801055-58801074 Msa0610880:intron 50.0%
!! GGCATTGGCTTCTGTATCCA+TGG + chr4_2:58801266-58801285 Msa0610880:CDS 50.0%
TACCCTCGCACTTGAATCCA+TGG - chr4_2:58801286-58801305 None:intergenic 50.0%
! TGTTAGAGCATCTCGGATGG+GGG + chr4_2:58801475-58801494 Msa0610880:intron 50.0%
TCCATTGGAGGAACCTGAAG+TGG + chr4_2:58801547-58801566 Msa0610880:intron 50.0%
CGATTGTGTATCAAGTGGCG+TGG + chr4_2:58801995-58802014 Msa0610880:intron 50.0%
TTTAAGGAGGAGGACTGAGC+TGG + chr4_2:58802062-58802081 Msa0610880:intron 50.0%
GGATTGTGGGACCCAAGCAA+CGG - chr4_2:58794383-58794402 None:intergenic 55.0%
GCGTCAATTGCTTCCGTCTC+CGG - chr4_2:58794481-58794500 None:intergenic 55.0%
GAGACGGAAGCAATTGACGC+CGG + chr4_2:58794481-58794500 Msa0610880:CDS 55.0%
AAGTACGTCGTGTTTGCCGG+TGG + chr4_2:58794505-58794524 Msa0610880:CDS 55.0%
TCGAGTATGGGTAGGCCACT+AGG - chr4_2:58795072-58795091 None:intergenic 55.0%
AACACACACACAGAGGAGGG+GGG + chr4_2:58795095-58795114 Msa0610880:intron 55.0%
! GTCTGGCTTCAATGTCCTCG+TGG - chr4_2:58795154-58795173 None:intergenic 55.0%
GGCAGCACTAGGACATGTTC+TGG - chr4_2:58796008-58796027 None:intergenic 55.0%
CGGGTTTACTGCATTGCAGG+AGG + chr4_2:58796046-58796065 Msa0610880:intron 55.0%
CGCATGAAGCCCAATAGTGC+TGG + chr4_2:58796347-58796366 Msa0610880:intron 55.0%
GGTACTACACTAGCTGCTGG+TGG + chr4_2:58796651-58796670 Msa0610880:CDS 55.0%
TACACTAGCTGCTGGTGGAG+AGG + chr4_2:58796656-58796675 Msa0610880:CDS 55.0%
! AGCTGCTGGTGGAGAGGTAT+TGG + chr4_2:58796662-58796681 Msa0610880:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr4_2:58798351-58798370 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr4_2:58798350-58798369 Msa0610880:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr4_2:58798351-58798370 Msa0610880:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr4_2:58798357-58798376 Msa0610880:intron 55.0%
TTGAACCGTCAGACCAGCAC+TGG + chr4_2:58798641-58798660 Msa0610880:intron 55.0%
AACAAGCTGGTTGCCAGTGC+TGG - chr4_2:58798657-58798676 None:intergenic 55.0%
GGGCTTGTAACAAGGGAAGG+AGG - chr4_2:58799494-58799513 None:intergenic 55.0%
CTTACTGCCTTGGGCGAACA+TGG + chr4_2:58799797-58799816 Msa0610880:intron 55.0%
GAACGAGAGGGACTTTGGCT+AGG + chr4_2:58800439-58800458 Msa0610880:intron 55.0%
GAGGGACTTTGGCTAGGTTG+AGG + chr4_2:58800445-58800464 Msa0610880:intron 55.0%
! GCCACTTCAGGTTCCTCCAA+TGG - chr4_2:58801551-58801570 None:intergenic 55.0%
ATGATCGGCAGCATCGTCGG+AGG - chr4_2:58794449-58794468 None:intergenic 60.0%
TACGTCGTGTTTGCCGGTGG+CGG + chr4_2:58794508-58794527 Msa0610880:CDS 60.0%
GCACTTCACCCCAACGGAGA+AGG + chr4_2:58794900-58794919 Msa0610880:CDS 60.0%
CCCTCACCCCCAGCACTATT+GGG - chr4_2:58796359-58796378 None:intergenic 60.0%
! CCCAATAGTGCTGGGGGTGA+GGG + chr4_2:58796356-58796375 Msa0610880:intron 60.0%
! CCAATAGTGCTGGGGGTGAG+GGG + chr4_2:58796357-58796376 Msa0610880:intron 60.0%
! CAATAGTGCTGGGGGTGAGG+GGG + chr4_2:58796358-58796377 Msa0610880:intron 60.0%
!! GGTTGCCAGTGCTGGTCTGA+CGG - chr4_2:58798649-58798668 None:intergenic 60.0%
AAGGAGGAGGACTGAGCTGG+TGG + chr4_2:58802065-58802084 Msa0610880:intron 60.0%
! GCCCAATAGTGCTGGGGGTG+AGG + chr4_2:58796355-58796374 Msa0610880:intron 65.0%
CCCCTCACCCCCAGCACTAT+TGG - chr4_2:58796360-58796379 None:intergenic 65.0%
CTGGGAATCTGCCCGCATGC+TGG - chr4_2:58798743-58798762 None:intergenic 65.0%
! GTCGTGTTTGCCGGTGGCGG+TGG + chr4_2:58794511-58794530 Msa0610880:CDS 70.0%
GCGGCTATCTCCACCGCCAC+CGG - chr4_2:58794524-58794543 None:intergenic 70.0%
GGCGGTGGAGATAGCCGCAG+TGG + chr4_2:58794526-58794545 Msa0610880:CDS 70.0%
TGGCGGCCCCTGCAGGGTTT+GGG + chr4_2:58797809-58797828 Msa0610880:CDS 70.0%
GTGGCGGCCCCTGCAGGGTT+TGG + chr4_2:58797808-58797827 Msa0610880:CDS 75.0%
!! TGGGAGGTGGCGGCCCCTGC+AGG + chr4_2:58797802-58797821 Msa0610880:CDS 80.0%
!! GGGAGGTGGCGGCCCCTGCA+GGG + chr4_2:58797803-58797822 Msa0610880:CDS 80.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 58794206 58802497 58794206 ID=Msa0610880;Name=Msa0610880
chr4_2 mRNA 58794206 58802497 58794206 ID=Msa0610880-mRNA-1;Parent=Msa0610880;Name=Msa0610880-mRNA-1;_AED=0.05;_eAED=0.05;_QI=113|1|1|1|1|1|10|314|411
chr4_2 exon 58794206 58794612 58794206 ID=Msa0610880-mRNA-1:exon:15504;Parent=Msa0610880-mRNA-1
chr4_2 exon 58794858 58794958 58794858 ID=Msa0610880-mRNA-1:exon:15505;Parent=Msa0610880-mRNA-1
chr4_2 exon 58796527 58796677 58796527 ID=Msa0610880-mRNA-1:exon:15506;Parent=Msa0610880-mRNA-1
chr4_2 exon 58797521 58797612 58797521 ID=Msa0610880-mRNA-1:exon:15507;Parent=Msa0610880-mRNA-1
chr4_2 exon 58797776 58797875 58797776 ID=Msa0610880-mRNA-1:exon:15508;Parent=Msa0610880-mRNA-1
chr4_2 exon 58799925 58800000 58799925 ID=Msa0610880-mRNA-1:exon:15509;Parent=Msa0610880-mRNA-1
chr4_2 exon 58800076 58800199 58800076 ID=Msa0610880-mRNA-1:exon:15510;Parent=Msa0610880-mRNA-1
chr4_2 exon 58801063 58801179 58801063 ID=Msa0610880-mRNA-1:exon:15511;Parent=Msa0610880-mRNA-1
chr4_2 exon 58801266 58801330 58801266 ID=Msa0610880-mRNA-1:exon:15512;Parent=Msa0610880-mRNA-1
chr4_2 exon 58802068 58802497 58802068 ID=Msa0610880-mRNA-1:exon:15513;Parent=Msa0610880-mRNA-1
chr4_2 five_prime_UTR 58794206 58794318 58794206 ID=Msa0610880-mRNA-1:five_prime_utr;Parent=Msa0610880-mRNA-1
chr4_2 CDS 58794319 58794612 58794319 ID=Msa0610880-mRNA-1:cds;Parent=Msa0610880-mRNA-1
chr4_2 CDS 58794858 58794958 58794858 ID=Msa0610880-mRNA-1:cds;Parent=Msa0610880-mRNA-1
chr4_2 CDS 58796527 58796677 58796527 ID=Msa0610880-mRNA-1:cds;Parent=Msa0610880-mRNA-1
chr4_2 CDS 58797521 58797612 58797521 ID=Msa0610880-mRNA-1:cds;Parent=Msa0610880-mRNA-1
chr4_2 CDS 58797776 58797875 58797776 ID=Msa0610880-mRNA-1:cds;Parent=Msa0610880-mRNA-1
chr4_2 CDS 58799925 58800000 58799925 ID=Msa0610880-mRNA-1:cds;Parent=Msa0610880-mRNA-1
chr4_2 CDS 58800076 58800199 58800076 ID=Msa0610880-mRNA-1:cds;Parent=Msa0610880-mRNA-1
chr4_2 CDS 58801063 58801179 58801063 ID=Msa0610880-mRNA-1:cds;Parent=Msa0610880-mRNA-1
chr4_2 CDS 58801266 58801330 58801266 ID=Msa0610880-mRNA-1:cds;Parent=Msa0610880-mRNA-1
chr4_2 CDS 58802068 58802183 58802068 ID=Msa0610880-mRNA-1:cds;Parent=Msa0610880-mRNA-1
chr4_2 three_prime_UTR 58802184 58802497 58802184 ID=Msa0610880-mRNA-1:three_prime_utr;Parent=Msa0610880-mRNA-1
Gene Sequence

>Msa0610880

ATGGGGAAAAAGCACGTCCCAGACCCTTCGAACCTGAAGAAATACGGCGTTCCTTTATACTCCGTTGCTTGGGTCCCACAATCCATTCTCAAATCGCTTCAAAACGTAACCGCCGATGATGATCATTCCTCCGACGATGCTGCCGATCATAAATCTTCGCCGGAGACGGAAGCAATTGACGCCGGAAAGTACGTCGTGTTTGCCGGTGGCGGTGGAGATAGCCGCAGTGGTATTCCTAATTCTGTGTTGCTCGGGCATTTCGATGTTGCATCGGATTCTCTCTCTGATCCACCGGTGTTTAAGCTAGGAACTAATTCCGAGTTGCCTTATAGAATGGCACTTCACCCCAACGGAGAAGGCATTATTTGTGCAATGGAAAAGCCAAAGTGTTGCAGATGGTTTGACTGGGATCAAAACGAGAATGCTGAAATTCACAAGTTGGGTCTGAAGGTTTCAGAGAAGCTTCTCACCCAGTTGGATAATGTTGGACAACAATTAGCATTGGCATTCAACAATGATGGTACTACACTAGCTGCTGGTGGAGAGGATGGCAGTCTAAGGGTTTTCAAGTGGCCTAGCATGGAAAATATTCTCAACGAGTCCAATGCTCATTCTACTGTGAAGGACTTGCATTTTAGTTCTGATGGCAAGTTGATTGTCTCTTTGGGAGGTGGCGGCCCCTGCAGGGTTTGGGATGTTTCTTCAGCAATCGTCTTAGCTACTCTAGCAAATGAAAATCGTGAAAATTTTAGCTCTTGCAGATTTTCTCAAACAAAGGATGGGACTCAGGTCCTATATATTGCTGCCAGAACAGATAAAGGTTTTGGAAGCATTGTGACCTGGAATACACAAACATGGGAAAGGATTAGTTCAAAGCATATTTTGCGCGATCCAATATGTGCATTCAATGTCTCAGCTGATGGAAAGTTTCTGGCATGCGGAACACCTGAAGGAGATATTGTAATTGTAAATTCAACAAATATGCAGATTCAGACAATGATAAAAAAGGCTCACCTTGGCGTAGTAACTGCTTTAGCATTTTCCCCTGATTCAAGGGCATTGGCTTCTGTATCCATGGATTCAAGTGCGAGGGTAACAATAATTGAAGAGAAGAAAAATGGAGGAGGACTGAGCTGGTGGATTGCAATATTTATCATCCTACTTGCAATAGCTGCTTACTTCCTGAAGGTTGAAGGAATTGAAAAGTTAAAGCTTCAATATTACAATCAATTGTAG

Protein sequence

>Msa0610880

MGKKHVPDPSNLKKYGVPLYSVAWVPQSILKSLQNVTADDDHSSDDAADHKSSPETEAIDAGKYVVFAGGGGDSRSGIPNSVLLGHFDVASDSLSDPPVFKLGTNSELPYRMALHPNGEGIICAMEKPKCCRWFDWDQNENAEIHKLGLKVSEKLLTQLDNVGQQLALAFNNDGTTLAAGGEDGSLRVFKWPSMENILNESNAHSTVKDLHFSSDGKLIVSLGGGGPCRVWDVSSAIVLATLANENRENFSSCRFSQTKDGTQVLYIAARTDKGFGSIVTWNTQTWERISSKHILRDPICAFNVSADGKFLACGTPEGDIVIVNSTNMQIQTMIKKAHLGVVTALAFSPDSRALASVSMDSSARVTIIEEKKNGGGLSWWIAIFIILLAIAAYFLKVEGIEKLKLQYYNQL*