Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279510 | MCI09569.1 | 56.000 | 75 | 23 | 2 | 1 | 75 | 8 | 72 | 1.83e-15 | 74.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279510 | sp|Q94CJ5|RER4_ARATH | 48.649 | 74 | 28 | 2 | 1 | 74 | 215 | 278 | 4.11e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279510 | A0A392PDL8 | 56.000 | 75 | 23 | 2 | 1 | 75 | 8 | 72 | 8.75e-16 | 74.7 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031710 | Msa0279510 | 0.840294 | 9.480073e-58 | -8.615850e-47 |
| Msa0171760 | Msa0279510 | 0.820026 | 8.526659e-53 | -8.615850e-47 |
| Msa0245730 | Msa0279510 | 0.806479 | 8.064889e-50 | -8.615850e-47 |
| Msa0279510 | Msa0288100 | 0.809519 | 1.817487e-50 | -8.615850e-47 |
| Msa0279510 | Msa0394530 | 0.836481 | 9.123327e-57 | -8.615850e-47 |
| Msa0279510 | Msa0402290 | 0.802754 | 4.828481e-49 | -8.615850e-47 |
| Msa0279510 | Msa0549910 | 0.802549 | 5.323135e-49 | -8.615850e-47 |
| Msa0279510 | Msa0554050 | 0.805468 | 1.315425e-49 | -8.615850e-47 |
| Msa0279510 | Msa0644140 | 0.971239 | 7.495761e-133 | -8.615850e-47 |
| Msa0279510 | Msa0766630 | 0.804594 | 2.004491e-49 | -8.615850e-47 |
| Msa0279510 | Msa0842620 | 0.808802 | 2.588845e-50 | -8.615850e-47 |
| Msa0279510 | Msa0960640 | 0.807396 | 5.160303e-50 | -8.615850e-47 |
| Msa0279510 | Msa0989360 | 0.814198 | 1.740717e-51 | -8.615850e-47 |
| Msa0279510 | Msa1017350 | 0.803513 | 3.363318e-49 | -8.615850e-47 |
| Msa0279510 | Msa1028970 | 0.810840 | 9.438079e-51 | -8.615850e-47 |
| Msa0279510 | Msa1054990 | 0.807585 | 4.704800e-50 | -8.615850e-47 |
| Msa0279510 | Msa1095570 | 0.814567 | 1.442385e-51 | -8.615850e-47 |
| Msa0279510 | Msa1420820 | 0.801129 | 1.041648e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279510 | MtrunA17_Chr4g0039291 | 67.273 | 55 | 17 | 1 | 1 | 55 | 220 | 273 | 1.38e-16 | 72.4 |
| Msa0279510 | MtrunA17_Chr4g0020011 | 54.545 | 55 | 24 | 1 | 1 | 55 | 209 | 262 | 5.93e-11 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279510 | AT5G12470.1 | 48.649 | 74 | 28 | 2 | 1 | 74 | 215 | 278 | 4.18e-13 | 63.2 |
Find 28 sgRNAs with CRISPR-Local
Find 447 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCAACACAATGAAGATTA+TGG | 0.240565 | 2_3:-13544713 | Msa0279510:three_prime_UTR |
| TTCTTTGCCAGGTTGCTCTA+TGG | 0.296320 | 2_3:-13552704 | Msa0279510:intron |
| CATCAAAAGCTCTTTGAACT+TGG | 0.355339 | 2_3:-13545426 | Msa0279510:CDS |
| CAGGCCAGATAATGCATTCC+AGG | 0.367166 | 2_3:-13552818 | Msa0279510:intron |
| TTAATAATCAGCTGATTAGA+TGG | 0.367288 | 2_3:+13544453 | None:intergenic |
| CAAACCTGGAATGCATTATC+TGG | 0.375066 | 2_3:+13552814 | None:intergenic |
| TCCCATAATCTTCATTGTGT+TGG | 0.409474 | 2_3:+13544711 | None:intergenic |
| GGTTATTCAGAATGGGGAAT+AGG | 0.422108 | 2_3:+13544490 | None:intergenic |
| TCCAACACAATGAAGATTAT+GGG | 0.437849 | 2_3:-13544712 | Msa0279510:three_prime_UTR |
| AAGGAAGCACAATGGGATCA+TGG | 0.468569 | 2_3:-13544810 | Msa0279510:CDS |
| GCAGGAAAAGGAAGCACAAT+GGG | 0.481641 | 2_3:-13544817 | Msa0279510:intron |
| AGGAAGCACAATGGGATCAT+GGG | 0.501840 | 2_3:-13544809 | Msa0279510:CDS |
| ATCAAAAGCTCTTTGAACTT+GGG | 0.501854 | 2_3:-13545425 | Msa0279510:intron |
| TTCAGAATGGGGAATAGGTC+CGG | 0.502512 | 2_3:+13544495 | None:intergenic |
| AATAAAATAAATTCTGCTAC+CGG | 0.521170 | 2_3:-13544514 | Msa0279510:three_prime_UTR |
| TCAAGTGGAAAGAAATGGAA+AGG | 0.576861 | 2_3:-13544755 | Msa0279510:three_prime_UTR |
| GCAGGTGCACGTAAATAGAC+TGG | 0.583484 | 2_3:+13552901 | None:intergenic |
| ATGCATTATCTGGCCTGTTG+TGG | 0.586687 | 2_3:+13552824 | None:intergenic |
| TCATATTTATAATACAACAT+AGG | 0.588298 | 2_3:-13544566 | Msa0279510:three_prime_UTR |
| TAGGCTATAGATACAGCAGC+AGG | 0.589838 | 2_3:-13544547 | Msa0279510:three_prime_UTR |
| TTTCAAGGTTATTCAGAATG+GGG | 0.592744 | 2_3:+13544484 | None:intergenic |
| CTTGCACTGATTCCATGTGG+TGG | 0.594128 | 2_3:+13552865 | None:intergenic |
| CACCACATGGAATCAGTGCA+AGG | 0.603826 | 2_3:-13552864 | Msa0279510:CDS |
| TTTCTTTGCTGATTATACTG+AGG | 0.608431 | 2_3:-13545451 | Msa0279510:CDS |
| TGCAGGAAAAGGAAGCACAA+TGG | 0.641704 | 2_3:-13544818 | Msa0279510:intron |
| GGTGGTCTAAAAGAAACAGC+AGG | 0.645640 | 2_3:+13552883 | None:intergenic |
| ACCACATGGAATCAGTGCAA+GGG | 0.646034 | 2_3:-13552863 | Msa0279510:CDS |
| GCCCTTGCACTGATTCCATG+TGG | 0.691849 | 2_3:+13552862 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAATTTATTTATAAATGT+TGG | + | chr2_3:13545822-13545841 | None:intergenic | 10.0% |
| !!! | TTTTGATACTTAATTTAATA+TGG | - | chr2_3:13546001-13546020 | Msa0279510:intron | 10.0% |
| !!! | TATAGATAATATTTCTAATT+AGG | - | chr2_3:13548028-13548047 | Msa0279510:intron | 10.0% |
| !! | AATTTAAACACATTATAAAT+AGG | + | chr2_3:13550225-13550244 | None:intergenic | 10.0% |
| !!! | TAATGTGTTTAAATTTATTT+TGG | - | chr2_3:13550268-13550287 | Msa0279510:intron | 10.0% |
| !!! | TTTTTGTTTAAACAAATTTT+TGG | + | chr2_3:13551474-13551493 | None:intergenic | 10.0% |
| !! | ATACTTAATTTAATATGGTA+TGG | - | chr2_3:13546006-13546025 | Msa0279510:intron | 15.0% |
| !!! | ATTTACTTTGAAGATATAAA+AGG | + | chr2_3:13546335-13546354 | None:intergenic | 15.0% |
| !! | ATATTAGTTATAATTATTCC+TGG | - | chr2_3:13546435-13546454 | Msa0279510:intron | 15.0% |
| !! | AACATTCTCTTAAAAATATT+AGG | - | chr2_3:13546667-13546686 | Msa0279510:intron | 15.0% |
| !! | AAAATAAAAAAGACAAGAAA+TGG | + | chr2_3:13546873-13546892 | None:intergenic | 15.0% |
| !!! | TTTAATGTAGAGATAAATTT+TGG | + | chr2_3:13547130-13547149 | None:intergenic | 15.0% |
| !!! | GTATTTTATATTGCTTTATA+TGG | + | chr2_3:13547587-13547606 | None:intergenic | 15.0% |
| !! | TATAACTTCTGTAATTAAAA+CGG | + | chr2_3:13547783-13547802 | None:intergenic | 15.0% |
| !! | GAAAATTAATGTAACAATAT+AGG | - | chr2_3:13548530-13548549 | Msa0279510:intron | 15.0% |
| !! | ACAATAACATTCAATAAAAT+TGG | + | chr2_3:13548705-13548724 | None:intergenic | 15.0% |
| !!! | AGTTCAAAATTTATTTTGAA+AGG | + | chr2_3:13548875-13548894 | None:intergenic | 15.0% |
| !!! | TAATGTGTTTAAATTCATTT+TGG | - | chr2_3:13550230-13550249 | Msa0279510:intron | 15.0% |
| !! | AGAAAAAAAAATGTTTCAAA+AGG | + | chr2_3:13550756-13550775 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTGGAAATGTTA+AGG | + | chr2_3:13551541-13551560 | None:intergenic | 15.0% |
| !!! | TTTCAAGATTTAAAATTTCT+AGG | - | chr2_3:13551760-13551779 | Msa0279510:intron | 15.0% |
| !!! | TTCAAGATTTAAAATTTCTA+GGG | - | chr2_3:13551761-13551780 | Msa0279510:intron | 15.0% |
| !! | TCATATTTATAATACAACAT+AGG | - | chr2_3:13552774-13552793 | Msa0279510:intron | 15.0% |
| !!! | TTTTTATCCTTTCATGTAAT+AGG | - | chr2_3:13544871-13544890 | Msa0279510:intron | 20.0% |
| !! | ATACTTAACAAATTAATCTG+TGG | - | chr2_3:13544940-13544959 | Msa0279510:intron | 20.0% |
| !! | TTACTATAGAGTTAGTTATA+GGG | + | chr2_3:13545009-13545028 | None:intergenic | 20.0% |
| !! | TTTACTATAGAGTTAGTTAT+AGG | + | chr2_3:13545010-13545029 | None:intergenic | 20.0% |
| !!! | AAAAAAGATTCTTTCTTTTG+TGG | - | chr2_3:13545049-13545068 | Msa0279510:intron | 20.0% |
| !! | AAAGGTTTCAAAGAAAAATT+GGG | + | chr2_3:13545100-13545119 | None:intergenic | 20.0% |
| !! | TAAAGGTTTCAAAGAAAAAT+TGG | + | chr2_3:13545101-13545120 | None:intergenic | 20.0% |
| !! | AGAAATTAGAATAAGGATAA+AGG | + | chr2_3:13545118-13545137 | None:intergenic | 20.0% |
| !! | TATCCTTATTCTAATTTCTT+TGG | - | chr2_3:13545119-13545138 | Msa0279510:intron | 20.0% |
| !! | TATCCAAAGAAATTAGAATA+AGG | + | chr2_3:13545125-13545144 | None:intergenic | 20.0% |
| !!! | GAAATATGAAGTTCTAATTT+TGG | - | chr2_3:13545216-13545235 | Msa0279510:intron | 20.0% |
| !! | TAAAATAAATGTCAAACAGA+AGG | + | chr2_3:13545353-13545372 | None:intergenic | 20.0% |
| !!! | TTCTGTTTGACATTTATTTT+AGG | - | chr2_3:13545352-13545371 | Msa0279510:intron | 20.0% |
| !!! | ATTTTAGGTTATGAATAAGT+TGG | - | chr2_3:13545367-13545386 | Msa0279510:intron | 20.0% |
| !!! | TTCTATTTCTTGACTTTTAT+TGG | - | chr2_3:13545450-13545469 | Msa0279510:CDS | 20.0% |
| !!! | TCTATTTCTTGACTTTTATT+GGG | - | chr2_3:13545451-13545470 | Msa0279510:CDS | 20.0% |
| !!! | TAAGCAATGGATTAAAAAAA+TGG | - | chr2_3:13545494-13545513 | Msa0279510:intron | 20.0% |
| !!! | AATAACATTTCCAATTTTCT+TGG | + | chr2_3:13545622-13545641 | None:intergenic | 20.0% |
| !! | AAATCATACAAAAGTTATTG+AGG | + | chr2_3:13545680-13545699 | None:intergenic | 20.0% |
| !!! | AAGAAATTAAAGTTTAAAGC+TGG | + | chr2_3:13545725-13545744 | None:intergenic | 20.0% |
| !! | GTTTGAATTTCACTTTAATT+AGG | - | chr2_3:13545747-13545766 | Msa0279510:intron | 20.0% |
| !! | ATTTATTTATAAATGTTGGC+AGG | + | chr2_3:13545818-13545837 | None:intergenic | 20.0% |
| !!! | TAATTTTTTTCCTCTAAAGT+TGG | - | chr2_3:13545965-13545984 | Msa0279510:intron | 20.0% |
| !!! | TTAAACCCTTTTTTTCTATT+AGG | + | chr2_3:13546032-13546051 | None:intergenic | 20.0% |
| !! | TTCTTTAATGATACTTTAGT+GGG | - | chr2_3:13546060-13546079 | Msa0279510:intron | 20.0% |
| !! | ACAAGTCATTAGTAAATATA+AGG | - | chr2_3:13546161-13546180 | Msa0279510:intron | 20.0% |
| !! | TTTCACATGTATAAAAACAT+AGG | - | chr2_3:13546188-13546207 | Msa0279510:intron | 20.0% |
| !!! | TAAACTAAAAGTGTTATGTT+TGG | - | chr2_3:13546376-13546395 | Msa0279510:intron | 20.0% |
| !! | AATGAATTAGTAAAGTAACA+AGG | + | chr2_3:13546530-13546549 | None:intergenic | 20.0% |
| !! | AATGTTAAAAAATAGTGAGA+TGG | + | chr2_3:13546632-13546651 | None:intergenic | 20.0% |
| !!! | TCCTTTTAATGTTTGTAATT+GGG | + | chr2_3:13546708-13546727 | None:intergenic | 20.0% |
| !!! | ATCCTTTTAATGTTTGTAAT+TGG | + | chr2_3:13546709-13546728 | None:intergenic | 20.0% |
| !! | CTCTACATTAAAAAGTTTAA+TGG | - | chr2_3:13547138-13547157 | Msa0279510:intron | 20.0% |
| !! | AAAATTGATCTTTCAAACAA+TGG | + | chr2_3:13547639-13547658 | None:intergenic | 20.0% |
| !!! | TGAAAGATCAATTTTCTAAT+TGG | - | chr2_3:13547644-13547663 | Msa0279510:intron | 20.0% |
| !!! | GTTTTAATTACAGAAGTTAT+AGG | - | chr2_3:13547782-13547801 | Msa0279510:intron | 20.0% |
| !! | TACTAAAAAATATACAGTGT+AGG | + | chr2_3:13547882-13547901 | None:intergenic | 20.0% |
| !! | ACATGATTTCATCAATTAAA+AGG | + | chr2_3:13548102-13548121 | None:intergenic | 20.0% |
| !! | AATTAATGTAACAATATAGG+AGG | - | chr2_3:13548533-13548552 | Msa0279510:intron | 20.0% |
| !! | ATTCAATAAAATTGGACAAA+AGG | + | chr2_3:13548697-13548716 | None:intergenic | 20.0% |
| !! | TATCATTATGAAGTATGAAA+CGG | + | chr2_3:13549154-13549173 | None:intergenic | 20.0% |
| !! | ATTACTTCTGTCAAATTATT+TGG | - | chr2_3:13549324-13549343 | Msa0279510:intron | 20.0% |
| !! | TTAGTTCAAAAATATGATGT+AGG | - | chr2_3:13549570-13549589 | Msa0279510:intron | 20.0% |
| !! | TAGTTCAAAAATATGATGTA+GGG | - | chr2_3:13549571-13549590 | Msa0279510:intron | 20.0% |
| !!! | ATTTCAAAATCTTACTGTTT+TGG | + | chr2_3:13549598-13549617 | None:intergenic | 20.0% |
| !!! | AAACAGTAAGATTTTGAAAT+TGG | - | chr2_3:13549598-13549617 | Msa0279510:intron | 20.0% |
| !!! | AACAGTAAGATTTTGAAATT+GGG | - | chr2_3:13549599-13549618 | Msa0279510:intron | 20.0% |
| !! | TATTTAACCAACCAATATTA+CGG | + | chr2_3:13549673-13549692 | None:intergenic | 20.0% |
| !!! | ACTAACTTTTTTTGTGTAAT+TGG | - | chr2_3:13549769-13549788 | Msa0279510:intron | 20.0% |
| !! | AATCAAAAATGAAGTAATGA+AGG | + | chr2_3:13550001-13550020 | None:intergenic | 20.0% |
| !!! | TTCATTACTTCATTTTTGAT+TGG | - | chr2_3:13550000-13550019 | Msa0279510:intron | 20.0% |
| !!! | TTTGTTTTGTAATTTAGCAA+TGG | - | chr2_3:13550314-13550333 | Msa0279510:intron | 20.0% |
| !!! | TACAACAAAAAAAGAAGTAT+TGG | + | chr2_3:13550437-13550456 | None:intergenic | 20.0% |
| !!! | TCATTACTTTTTCTTACTAA+TGG | + | chr2_3:13550503-13550522 | None:intergenic | 20.0% |
| !!! | AAACAACATTCATTTTGAAA+TGG | + | chr2_3:13550536-13550555 | None:intergenic | 20.0% |
| !! | AATTCTAAGTGTCATATTTA+CGG | - | chr2_3:13550860-13550879 | Msa0279510:intron | 20.0% |
| !! | TTTAGAAAAATTAGGACTTT+AGG | + | chr2_3:13550891-13550910 | None:intergenic | 20.0% |
| !!! | ATAGGAGTTTTAGAAAAATT+AGG | + | chr2_3:13550899-13550918 | None:intergenic | 20.0% |
| !!! | AGTTTTGAAGTTAAAAAGAT+AGG | + | chr2_3:13550917-13550936 | None:intergenic | 20.0% |
| !! | CTTGCAATTTATACATAAAT+TGG | + | chr2_3:13550983-13551002 | None:intergenic | 20.0% |
| !!! | TTGTTTAAACAAATTTTTGG+CGG | + | chr2_3:13551471-13551490 | None:intergenic | 20.0% |
| !! | TTTCCAAAAAAAAATACCTA+TGG | - | chr2_3:13551546-13551565 | Msa0279510:intron | 20.0% |
| !!! | TTTTTTGTTTTTCTAGATCT+AGG | + | chr2_3:13551573-13551592 | None:intergenic | 20.0% |
| !! | AAGATATTATCATACAAAGT+TGG | + | chr2_3:13552046-13552065 | None:intergenic | 20.0% |
| !!! | AACTTTTGTAAGATTTTAGT+GGG | - | chr2_3:13552096-13552115 | Msa0279510:intron | 20.0% |
| !! | AAGAAATTATCATGTTAATC+TGG | + | chr2_3:13552128-13552147 | None:intergenic | 20.0% |
| !! | CAGAAATTAAAATTTACAGT+TGG | + | chr2_3:13552260-13552279 | None:intergenic | 20.0% |
| !!! | CAACTGTAAATTTTAATTTC+TGG | - | chr2_3:13552258-13552277 | Msa0279510:intron | 20.0% |
| !!! | TATTATTTTTACATATGCCA+AGG | + | chr2_3:13552402-13552421 | None:intergenic | 20.0% |
| !! | GTAAAAATAATAGAATGAAG+TGG | - | chr2_3:13552410-13552429 | Msa0279510:intron | 20.0% |
| !! | AATAAAATAAATTCTGCTAC+CGG | - | chr2_3:13552826-13552845 | Msa0279510:CDS | 20.0% |
| !! | TAATGTTAATTTTCTTTGCC+AGG | - | chr2_3:13544625-13544644 | Msa0279510:three_prime_UTR | 25.0% |
| ! | CAACAACAAACTAAAAAGAA+AGG | + | chr2_3:13544737-13544756 | None:intergenic | 25.0% |
| !!! | CATGTACTGTTTTTTAATTC+AGG | + | chr2_3:13544907-13544926 | None:intergenic | 25.0% |
| ! | CTGAATTAAAAAACAGTACA+TGG | - | chr2_3:13544905-13544924 | Msa0279510:intron | 25.0% |
| ! | TTTCATACTTAAATTCCAAG+AGG | + | chr2_3:13545200-13545219 | None:intergenic | 25.0% |
| ! | AGAAAGAAAACCACTTAAAA+CGG | + | chr2_3:13545568-13545587 | None:intergenic | 25.0% |
| ! | GCATTAAATTCCAAGAAAAT+TGG | - | chr2_3:13545609-13545628 | Msa0279510:intron | 25.0% |
| ! | AAAAGTTATTGAGGTTTCTA+AGG | + | chr2_3:13545671-13545690 | None:intergenic | 25.0% |
| !! | ATGTTCCTTTTTGTTGATAT+TGG | - | chr2_3:13545784-13545803 | Msa0279510:intron | 25.0% |
| ! | CAATTCCAATATCAACAAAA+AGG | + | chr2_3:13545792-13545811 | None:intergenic | 25.0% |
| !!! | TGCATCTTACATTTTTTTCT+TGG | - | chr2_3:13545903-13545922 | Msa0279510:intron | 25.0% |
| ! | AAAAATCTTTCCAACTTTAG+AGG | + | chr2_3:13545978-13545997 | None:intergenic | 25.0% |
| ! | TATGGCCTAATAGAAAAAAA+GGG | - | chr2_3:13546024-13546043 | Msa0279510:intron | 25.0% |
| ! | GAAAAAAAGGGTTTAAAGAA+AGG | - | chr2_3:13546036-13546055 | Msa0279510:intron | 25.0% |
| ! | CTTCTTTAATGATACTTTAG+TGG | - | chr2_3:13546059-13546078 | Msa0279510:intron | 25.0% |
| ! | AAATCTAAGGGAATAAAGAA+AGG | - | chr2_3:13546090-13546109 | Msa0279510:intron | 25.0% |
| !!! | CTTAATCACTTTTTCTCAAT+TGG | - | chr2_3:13546225-13546244 | Msa0279510:intron | 25.0% |
| !! | TATTCCTGGAGTATTATATT+AGG | - | chr2_3:13546449-13546468 | Msa0279510:intron | 25.0% |
| !!! | TGAAAGTAGTTTTGATAGAA+GGG | + | chr2_3:13546563-13546582 | None:intergenic | 25.0% |
| ! | ACCCAATTACAAACATTAAA+AGG | - | chr2_3:13546704-13546723 | Msa0279510:intron | 25.0% |
| ! | AGAAAAATACACAAACCTAT+TGG | + | chr2_3:13546811-13546830 | None:intergenic | 25.0% |
| ! | TAAATTAAATTATCGTGTGC+AGG | - | chr2_3:13547010-13547029 | Msa0279510:intron | 25.0% |
| ! | AGTAATGATGATTCAAACAA+AGG | + | chr2_3:13547193-13547212 | None:intergenic | 25.0% |
| ! | CAAATACACCAATTTCAAAT+GGG | + | chr2_3:13547305-13547324 | None:intergenic | 25.0% |
| ! | TCAAATACACCAATTTCAAA+TGG | + | chr2_3:13547306-13547325 | None:intergenic | 25.0% |
| ! | GAACACATAAATGTACTTAT+AGG | - | chr2_3:13547448-13547467 | Msa0279510:intron | 25.0% |
| !! | TTGCATTTTTCCAAATTCAT+GGG | + | chr2_3:13547506-13547525 | None:intergenic | 25.0% |
| !! | TTTGCATTTTTCCAAATTCA+TGG | + | chr2_3:13547507-13547526 | None:intergenic | 25.0% |
| ! | ATGGAGAAATTTATCAATGA+AGG | - | chr2_3:13547746-13547765 | Msa0279510:intron | 25.0% |
| ! | AATTTATCAATGAAGGTTAG+TGG | - | chr2_3:13547753-13547772 | Msa0279510:intron | 25.0% |
| ! | GTAGCAAGAATAATGTAATT+TGG | - | chr2_3:13547959-13547978 | Msa0279510:intron | 25.0% |
| !!! | TTATTTTAGTGTTCTTCACA+AGG | + | chr2_3:13547997-13548016 | None:intergenic | 25.0% |
| !!! | GGTAAAAGTATTATGTTCTT+CGG | + | chr2_3:13548360-13548379 | None:intergenic | 25.0% |
| ! | AAAGATAATGAAGAATGACA+AGG | - | chr2_3:13548563-13548582 | Msa0279510:intron | 25.0% |
| ! | TATGATTACCTTGATTATGT+AGG | + | chr2_3:13548650-13548669 | None:intergenic | 25.0% |
| ! | AGGTTAACATATGATATGTT+GGG | + | chr2_3:13548677-13548696 | None:intergenic | 25.0% |
| ! | AAGGTTAACATATGATATGT+TGG | + | chr2_3:13548678-13548697 | None:intergenic | 25.0% |
| ! | AAGTTTAACAAAGAGTTCTA+CGG | + | chr2_3:13548782-13548801 | None:intergenic | 25.0% |
| !! | GCAATTATTTAACTTTGCAA+GGG | + | chr2_3:13549064-13549083 | None:intergenic | 25.0% |
| !! | TGCAATTATTTAACTTTGCA+AGG | + | chr2_3:13549065-13549084 | None:intergenic | 25.0% |
| !!! | GATATGCGTTTTTAATTTGT+TGG | - | chr2_3:13549170-13549189 | Msa0279510:intron | 25.0% |
| ! | CAAATTATTTGGTTATCTCA+TGG | - | chr2_3:13549335-13549354 | Msa0279510:intron | 25.0% |
| !!! | AGAAGATAGTTTTGATAGAA+AGG | + | chr2_3:13549362-13549381 | None:intergenic | 25.0% |
| !! | TACACTATTAATTGCAGTTT+TGG | - | chr2_3:13549393-13549412 | Msa0279510:intron | 25.0% |
| !!! | TTTTGGCTTAATTGTAGTTT+TGG | + | chr2_3:13549628-13549647 | None:intergenic | 25.0% |
| ! | ACAATTAAGCCAAAACTAAT+AGG | - | chr2_3:13549633-13549652 | Msa0279510:intron | 25.0% |
| !!! | CGATTATAACCTATTAGTTT+TGG | + | chr2_3:13549645-13549664 | None:intergenic | 25.0% |
| !! | CTCTAAGAAAAAGGTTAAAT+TGG | - | chr2_3:13549710-13549729 | Msa0279510:intron | 25.0% |
| ! | ATATTAAAATGACATTTGCG+AGG | - | chr2_3:13549741-13549760 | Msa0279510:intron | 25.0% |
| ! | GAAATTCATAAAGACAAATC+TGG | - | chr2_3:13549890-13549909 | Msa0279510:intron | 25.0% |
| !! | TTAAGCTTATGTTTTCTTCA+TGG | - | chr2_3:13549956-13549975 | Msa0279510:intron | 25.0% |
| ! | TTATGGCCAATTCATAAATA+CGG | + | chr2_3:13550026-13550045 | None:intergenic | 25.0% |
| ! | TATTTATGAATTGGCCATAA+AGG | - | chr2_3:13550026-13550045 | Msa0279510:intron | 25.0% |
| !! | AGTATCAAACTTTTCCTTTA+TGG | + | chr2_3:13550043-13550062 | None:intergenic | 25.0% |
| !!! | GACATTGTTTTTTTGAAGAA+AGG | - | chr2_3:13550102-13550121 | Msa0279510:intron | 25.0% |
| ! | CTAATTCATGATAGAAAAAG+TGG | - | chr2_3:13550469-13550488 | Msa0279510:intron | 25.0% |
| !!! | AACATTCATTTTGAAATGGA+GGG | + | chr2_3:13550532-13550551 | None:intergenic | 25.0% |
| !! | TTCAAAATGAATGTTGTTTG+AGG | - | chr2_3:13550537-13550556 | Msa0279510:intron | 25.0% |
| ! | AAATGCAATGATTAGAGTAA+AGG | - | chr2_3:13550577-13550596 | Msa0279510:intron | 25.0% |
| ! | AATGCAATGATTAGAGTAAA+GGG | - | chr2_3:13550578-13550597 | Msa0279510:intron | 25.0% |
| !! | CAAAGCAAAAGTAATGTTTT+GGG | - | chr2_3:13550662-13550681 | Msa0279510:intron | 25.0% |
| ! | ATCTTATGATTTACATGAGT+TGG | - | chr2_3:13550945-13550964 | Msa0279510:intron | 25.0% |
| ! | TACATGTCCAAAATAGTAAT+GGG | + | chr2_3:13551010-13551029 | None:intergenic | 25.0% |
| ! | ATACATGTCCAAAATAGTAA+TGG | + | chr2_3:13551011-13551030 | None:intergenic | 25.0% |
| ! | TGCAAAAAGTAAAGAAAACA+CGG | - | chr2_3:13551071-13551090 | Msa0279510:intron | 25.0% |
| !!! | TACTGTGTTTTGTTTTTTTG+AGG | - | chr2_3:13551697-13551716 | Msa0279510:intron | 25.0% |
| !! | CAACTTTTGTAAGATTTTAG+TGG | - | chr2_3:13552095-13552114 | Msa0279510:intron | 25.0% |
| ! | CTTTAAATCATACATAAAGC+TGG | + | chr2_3:13552340-13552359 | None:intergenic | 25.0% |
| !! | TTCTGCTATAGATCATTTTA+TGG | + | chr2_3:13552367-13552386 | None:intergenic | 25.0% |
| ! | AAAAATCAAGTGGAAAGAAA+TGG | - | chr2_3:13552580-13552599 | Msa0279510:intron | 25.0% |
| !!! | GTGTGTAATTTTTTTTTTCC+AGG | - | chr2_3:13552700-13552719 | Msa0279510:intron | 25.0% |
| !! | TTCTTTTGTACAATTTTTCC+TGG | + | chr2_3:13552721-13552740 | None:intergenic | 25.0% |
| !!! | TTTTCAAGGTTATTCAGAAT+GGG | + | chr2_3:13552860-13552879 | None:intergenic | 25.0% |
| !!! | TTTTTCAAGGTTATTCAGAA+TGG | + | chr2_3:13552861-13552880 | None:intergenic | 25.0% |
| !!! | TAGATGGTTTTAGTTTTTCA+AGG | + | chr2_3:13552874-13552893 | None:intergenic | 25.0% |
| ! | TTAATAATCAGCTGATTAGA+TGG | + | chr2_3:13552890-13552909 | None:intergenic | 25.0% |
| GTTGTGGAAAAACTTAACAA+GGG | + | chr2_3:13544503-13544522 | None:intergenic | 30.0% | |
| TGTTGTGGAAAAACTTAACA+AGG | + | chr2_3:13544504-13544523 | None:intergenic | 30.0% | |
| ! | TTGTTAAGTTTTTCCACAAC+AGG | - | chr2_3:13544503-13544522 | Msa0279510:three_prime_UTR | 30.0% |
| ATACATGCCTATTACATGAA+AGG | + | chr2_3:13544881-13544900 | None:intergenic | 30.0% | |
| TTGATCAAGAGTAAGAGAAA+AGG | + | chr2_3:13544985-13545004 | None:intergenic | 30.0% | |
| TAGAGTTCAGGATAGAAATT+GGG | + | chr2_3:13545173-13545192 | None:intergenic | 30.0% | |
| TTAGAGTTCAGGATAGAAAT+TGG | + | chr2_3:13545174-13545193 | None:intergenic | 30.0% | |
| !! | TTCTAATTTTGGTGATAGAG+TGG | - | chr2_3:13545227-13545246 | Msa0279510:intron | 30.0% |
| ! | ATTTCTTGACTTTTATTGGG+TGG | - | chr2_3:13545454-13545473 | Msa0279510:CDS | 30.0% |
| TCCATTGCTTAATTACTCAA+AGG | + | chr2_3:13545485-13545504 | None:intergenic | 30.0% | |
| ! | TGGAGTATTTAAAACAAGAG+AGG | - | chr2_3:13545923-13545942 | Msa0279510:intron | 30.0% |
| GTATGGCCTAATAGAAAAAA+AGG | - | chr2_3:13546023-13546042 | Msa0279510:intron | 30.0% | |
| TTCTCAATTGGAGTAATTAC+AGG | - | chr2_3:13546237-13546256 | Msa0279510:intron | 30.0% | |
| AGTTCCTAATATAATACTCC+AGG | + | chr2_3:13546456-13546475 | None:intergenic | 30.0% | |
| AAGTAACAAGGAAAAGACTA+AGG | + | chr2_3:13546518-13546537 | None:intergenic | 30.0% | |
| !!! | CTGAAAGTAGTTTTGATAGA+AGG | + | chr2_3:13546564-13546583 | None:intergenic | 30.0% |
| !! | AGTGAGATGGCTTTTAAAAA+GGG | + | chr2_3:13546619-13546638 | None:intergenic | 30.0% |
| !! | TAGTGAGATGGCTTTTAAAA+AGG | + | chr2_3:13546620-13546639 | None:intergenic | 30.0% |
| TAATGTTTGTAATTGGGTCA+AGG | + | chr2_3:13546702-13546721 | None:intergenic | 30.0% | |
| TTTGTTACAATTCTTCACAG+AGG | - | chr2_3:13546747-13546766 | Msa0279510:intron | 30.0% | |
| AAAAGACAAGAAATGGAGTA+AGG | + | chr2_3:13546866-13546885 | None:intergenic | 30.0% | |
| CCAATATCAATAACTCTTTC+AGG | + | chr2_3:13546903-13546922 | None:intergenic | 30.0% | |
| CCTGAAAGAGTTATTGATAT+TGG | - | chr2_3:13546900-13546919 | Msa0279510:intron | 30.0% | |
| AGTAGAAATTTAACTGCACA+TGG | - | chr2_3:13546951-13546970 | Msa0279510:intron | 30.0% | |
| !!! | CATTACTATTTTACTGACTC+TGG | - | chr2_3:13547206-13547225 | Msa0279510:intron | 30.0% |
| TTCAAGATTTATGTAGCATG+AGG | + | chr2_3:13547270-13547289 | None:intergenic | 30.0% | |
| ! | TTTTATTGACCCCATGAATT+TGG | - | chr2_3:13547493-13547512 | Msa0279510:intron | 30.0% |
| ! | TGCATTTTTCCAAATTCATG+GGG | + | chr2_3:13547505-13547524 | None:intergenic | 30.0% |
| GAATTTGGAAAAATGCAAAG+AGG | - | chr2_3:13547508-13547527 | Msa0279510:intron | 30.0% | |
| !! | AATATACAGTGTAGGTTGAT+TGG | + | chr2_3:13547874-13547893 | None:intergenic | 30.0% |
| TATCTATTAGAACTGCTTAG+AGG | + | chr2_3:13547912-13547931 | None:intergenic | 30.0% | |
| ! | AGCAGTTCTAATAGATATGA+TGG | - | chr2_3:13547915-13547934 | Msa0279510:intron | 30.0% |
| TCCTATGATGAATTCCATAT+GGG | + | chr2_3:13548072-13548091 | None:intergenic | 30.0% | |
| ATCCTATGATGAATTCCATA+TGG | + | chr2_3:13548073-13548092 | None:intergenic | 30.0% | |
| GATGAAATCATGTTCCAAAT+TGG | - | chr2_3:13548109-13548128 | Msa0279510:intron | 30.0% | |
| TAAGGACATGTTAACCAATT+TGG | + | chr2_3:13548126-13548145 | None:intergenic | 30.0% | |
| CAAATATAGTCGCTATTGTA+AGG | + | chr2_3:13548144-13548163 | None:intergenic | 30.0% | |
| ! | AAAATGTGAGCATTTTGCTT+TGG | + | chr2_3:13548461-13548480 | None:intergenic | 30.0% |
| ! | TTCAGAGAACACTTCTAAAA+AGG | + | chr2_3:13548498-13548517 | None:intergenic | 30.0% |
| TAACATATGATATGTTGGGT+GGG | + | chr2_3:13548673-13548692 | None:intergenic | 30.0% | |
| TTAACATATGATATGTTGGG+TGG | + | chr2_3:13548674-13548693 | None:intergenic | 30.0% | |
| GTTAAACTTAATCTACACCT+TGG | - | chr2_3:13548793-13548812 | Msa0279510:intron | 30.0% | |
| ! | CTTTTTATGCAATTTGTCCA+AGG | + | chr2_3:13548813-13548832 | None:intergenic | 30.0% |
| AAATCACAACAGTAACATGA+AGG | + | chr2_3:13548936-13548955 | None:intergenic | 30.0% | |
| GCATGAATCACTATGTTAAT+CGG | + | chr2_3:13549088-13549107 | None:intergenic | 30.0% | |
| ATGGAAATATTTCACGAATG+AGG | + | chr2_3:13549200-13549219 | None:intergenic | 30.0% | |
| ATGAGCTGATAGAAACTATA+GGG | + | chr2_3:13549224-13549243 | None:intergenic | 30.0% | |
| AATGAGCTGATAGAAACTAT+AGG | + | chr2_3:13549225-13549244 | None:intergenic | 30.0% | |
| ! | AGTCTTTTCATTCTAAGTTC+TGG | - | chr2_3:13549263-13549282 | Msa0279510:intron | 30.0% |
| AAAACTATCTTCTGATACCA+AGG | - | chr2_3:13549369-13549388 | Msa0279510:intron | 30.0% | |
| TGCAATTAATAGTGTATCCT+TGG | + | chr2_3:13549389-13549408 | None:intergenic | 30.0% | |
| TAATCGCAATACCGTAATAT+TGG | - | chr2_3:13549659-13549678 | Msa0279510:intron | 30.0% | |
| TGGTTAAATATGTTGACATC+CGG | - | chr2_3:13549683-13549702 | Msa0279510:intron | 30.0% | |
| ! | ACCTTTTTCTTAGAGTTAAC+CGG | + | chr2_3:13549705-13549724 | None:intergenic | 30.0% |
| !!! | CTTTTTTTGTGTAATTGGTG+AGG | - | chr2_3:13549774-13549793 | Msa0279510:intron | 30.0% |
| !! | AAAGAAGTATTGGATCGAAA+AGG | + | chr2_3:13550427-13550446 | None:intergenic | 30.0% |
| !!! | CAACATTCATTTTGAAATGG+AGG | + | chr2_3:13550533-13550552 | None:intergenic | 30.0% |
| ATCATTGCATTTCTTGATGT+GGG | + | chr2_3:13550569-13550588 | None:intergenic | 30.0% | |
| AATCATTGCATTTCTTGATG+TGG | + | chr2_3:13550570-13550589 | None:intergenic | 30.0% | |
| AATGGTTGAAAGGGATAATT+TGG | + | chr2_3:13550617-13550636 | None:intergenic | 30.0% | |
| AAATTATCCCTTTCAACCAT+TGG | - | chr2_3:13550616-13550635 | Msa0279510:intron | 30.0% | |
| ! | GCAAAGCAAAAGTAATGTTT+TGG | - | chr2_3:13550661-13550680 | Msa0279510:intron | 30.0% |
| !! | TTTTGGGAGTAGTGTATATA+GGG | - | chr2_3:13550678-13550697 | Msa0279510:intron | 30.0% |
| !! | TTCAAAATGAGTGTCACTTT+AGG | + | chr2_3:13550780-13550799 | None:intergenic | 30.0% |
| ! | ACATGAGTTGGATTGATTTA+TGG | - | chr2_3:13550957-13550976 | Msa0279510:intron | 30.0% |
| ACATGTCCAAAATAGTAATG+GGG | + | chr2_3:13551009-13551028 | None:intergenic | 30.0% | |
| AGTAAAGAAAACACGGAATA+TGG | - | chr2_3:13551078-13551097 | Msa0279510:intron | 30.0% | |
| GTAAAGAAAACACGGAATAT+GGG | - | chr2_3:13551079-13551098 | Msa0279510:intron | 30.0% | |
| GAAATGAATGAGTTTGTGAA+GGG | + | chr2_3:13551296-13551315 | None:intergenic | 30.0% | |
| AGAAATGAATGAGTTTGTGA+AGG | + | chr2_3:13551297-13551316 | None:intergenic | 30.0% | |
| !!! | TTTAAACAAATTTTTGGCGG+CGG | + | chr2_3:13551468-13551487 | None:intergenic | 30.0% |
| AAGAGAAGGAAGAAATACAT+AGG | + | chr2_3:13551507-13551526 | None:intergenic | 30.0% | |
| !!! | GGACCATAGGTATTTTTTTT+TGG | + | chr2_3:13551552-13551571 | None:intergenic | 30.0% |
| !! | TAATACTTGGTGCTTTGATT+CGG | - | chr2_3:13551624-13551643 | Msa0279510:intron | 30.0% |
| !!! | TTTTGAGGTTTTGAGAATGT+TGG | - | chr2_3:13551712-13551731 | Msa0279510:intron | 30.0% |
| !!! | TGATTTTGGTTATGTGTTGT+TGG | - | chr2_3:13551802-13551821 | Msa0279510:intron | 30.0% |
| ! | TTTCTTTGCTGATTATACTG+AGG | - | chr2_3:13551889-13551908 | Msa0279510:intron | 30.0% |
| ATCAAAAGCTCTTTGAACTT+GGG | - | chr2_3:13551915-13551934 | Msa0279510:intron | 30.0% | |
| CAGAAATTTGATGAATACCT+TGG | - | chr2_3:13552382-13552401 | Msa0279510:intron | 30.0% | |
| ACATTATTGTGAAGAAAGAG+GGG | + | chr2_3:13552503-13552522 | None:intergenic | 30.0% | |
| CACATTATTGTGAAGAAAGA+GGG | + | chr2_3:13552504-13552523 | None:intergenic | 30.0% | |
| GCAAAGCAATAAAAATCAAG+TGG | - | chr2_3:13552570-13552589 | Msa0279510:intron | 30.0% | |
| ATCCAACACAATGAAGATTA+TGG | - | chr2_3:13552627-13552646 | Msa0279510:intron | 30.0% | |
| TCCAACACAATGAAGATTAT+GGG | - | chr2_3:13552628-13552647 | Msa0279510:intron | 30.0% | |
| TTTCAAGGTTATTCAGAATG+GGG | + | chr2_3:13552859-13552878 | None:intergenic | 30.0% | |
| CCTAAGGATATATACAAACC+TGG | + | chr2_3:13544543-13544562 | None:intergenic | 35.0% | |
| CCAGGTTTGTATATATCCTT+AGG | - | chr2_3:13544540-13544559 | Msa0279510:three_prime_UTR | 35.0% | |
| ATCCTTAGGTTACATTCACA+TGG | - | chr2_3:13544554-13544573 | Msa0279510:three_prime_UTR | 35.0% | |
| AACCATGTGAATGTAACCTA+AGG | + | chr2_3:13544559-13544578 | None:intergenic | 35.0% | |
| GCAAAAAATTGTTGCACTTG+TGG | - | chr2_3:13544682-13544701 | Msa0279510:three_prime_UTR | 35.0% | |
| AAGCATAAGAGCTCGAAAAA+AGG | - | chr2_3:13545414-13545433 | Msa0279510:intron | 35.0% | |
| GCCTTTGAGTAATTAAGCAA+TGG | - | chr2_3:13545481-13545500 | Msa0279510:intron | 35.0% | |
| AATGGTAGTTGCTGAAATGT+TGG | - | chr2_3:13545512-13545531 | Msa0279510:intron | 35.0% | |
| TGTAACAAAGCACAATGCAA+AGG | + | chr2_3:13546736-13546755 | None:intergenic | 35.0% | |
| ! | TTACATTTGCTGCATCCAAT+AGG | - | chr2_3:13546793-13546812 | Msa0279510:intron | 35.0% |
| AACTTAATAGCGATAGGTTG+AGG | + | chr2_3:13546981-13547000 | None:intergenic | 35.0% | |
| ! | AATCTCGAAAGGGTGTATTA+GGG | - | chr2_3:13547033-13547052 | Msa0279510:intron | 35.0% |
| !! | AATTTTGGCATTCCTTACCA+AGG | + | chr2_3:13547115-13547134 | None:intergenic | 35.0% |
| ! | TAGCAGAACCCATTTGAAAT+TGG | - | chr2_3:13547294-13547313 | Msa0279510:intron | 35.0% |
| TTCTCTGATGACAAATCATG+TGG | + | chr2_3:13547339-13547358 | None:intergenic | 35.0% | |
| GAGGTGTAGATTAGAATTAG+TGG | - | chr2_3:13547527-13547546 | Msa0279510:intron | 35.0% | |
| ! | TTGTGTCATTGTTGCTAAAG+GGG | + | chr2_3:13547702-13547721 | None:intergenic | 35.0% |
| ! | GTTGTGTCATTGTTGCTAAA+GGG | + | chr2_3:13547703-13547722 | None:intergenic | 35.0% |
| ! | AGTTGTGTCATTGTTGCTAA+AGG | + | chr2_3:13547704-13547723 | None:intergenic | 35.0% |
| ! | CATTAGCTCTTTCTCATCAA+TGG | + | chr2_3:13547729-13547748 | None:intergenic | 35.0% |
| CATTGATGAGAAAGAGCTAA+TGG | - | chr2_3:13547727-13547746 | Msa0279510:intron | 35.0% | |
| TTGGAGAAGCAAAAATCGTT+TGG | + | chr2_3:13547855-13547874 | None:intergenic | 35.0% | |
| TCCCATATGGAATTCATCAT+AGG | - | chr2_3:13548068-13548087 | Msa0279510:intron | 35.0% | |
| GCACCTATTATTTCCGTAAA+TGG | - | chr2_3:13548596-13548615 | Msa0279510:intron | 35.0% | |
| GCTCCATTTACGGAAATAAT+AGG | + | chr2_3:13548602-13548621 | None:intergenic | 35.0% | |
| GATCAACTCCTACATAATCA+AGG | - | chr2_3:13548639-13548658 | Msa0279510:intron | 35.0% | |
| AGTTCTACGGAATTGGAATT+TGG | + | chr2_3:13548769-13548788 | None:intergenic | 35.0% | |
| AACAAAGAGTTCTACGGAAT+TGG | + | chr2_3:13548776-13548795 | None:intergenic | 35.0% | |
| AGTTGATTGTGGAAGAGAAA+TGG | - | chr2_3:13548972-13548991 | Msa0279510:intron | 35.0% | |
| ! | ACTCTTTGCTAGCTTAGTTA+TGG | + | chr2_3:13549012-13549031 | None:intergenic | 35.0% |
| ! | TAAGCTAGCAAAGAGTATGA+AGG | - | chr2_3:13549016-13549035 | Msa0279510:intron | 35.0% |
| ! | AAGCTAGCAAAGAGTATGAA+GGG | - | chr2_3:13549017-13549036 | Msa0279510:intron | 35.0% |
| GAAATATTTCACGAATGAGG+AGG | + | chr2_3:13549197-13549216 | None:intergenic | 35.0% | |
| CTGATAGAAACTATAGGGTA+TGG | + | chr2_3:13549219-13549238 | None:intergenic | 35.0% | |
| ! | TCCGGTTAACTCTAAGAAAA+AGG | - | chr2_3:13549701-13549720 | Msa0279510:intron | 35.0% |
| ! | GATTGGCCGTATTTATGAAT+TGG | - | chr2_3:13550017-13550036 | Msa0279510:intron | 35.0% |
| !!! | GATACTGTTTTTGACACAGT+TGG | - | chr2_3:13550057-13550076 | Msa0279510:intron | 35.0% |
| TGTGCTAGATACAAAACAGA+TGG | - | chr2_3:13550080-13550099 | Msa0279510:intron | 35.0% | |
| TCATCTTAGAGTTGTTCAGA+AGG | + | chr2_3:13550196-13550215 | None:intergenic | 35.0% | |
| GCAATGGATATCGTTAAGTT+TGG | - | chr2_3:13550330-13550349 | Msa0279510:intron | 35.0% | |
| TATCGTTAAGTTTGGAGAGT+TGG | - | chr2_3:13550338-13550357 | Msa0279510:intron | 35.0% | |
| !! | GAAGAAGCAATAGTTTTGCA+AGG | - | chr2_3:13550360-13550379 | Msa0279510:intron | 35.0% |
| AGAGAAACCAATGGTTGAAA+GGG | + | chr2_3:13550626-13550645 | None:intergenic | 35.0% | |
| TAGAGAAACCAATGGTTGAA+AGG | + | chr2_3:13550627-13550646 | None:intergenic | 35.0% | |
| GATAGTAGTAGAGAAACCAA+TGG | + | chr2_3:13550635-13550654 | None:intergenic | 35.0% | |
| !!! | GTTTTGGGAGTAGTGTATAT+AGG | - | chr2_3:13550677-13550696 | Msa0279510:intron | 35.0% |
| TTTGGGAGTAGTGTATATAG+GGG | - | chr2_3:13550679-13550698 | Msa0279510:intron | 35.0% | |
| ! | AGTGTATATAGGGGTACAAT+TGG | - | chr2_3:13550688-13550707 | Msa0279510:intron | 35.0% |
| ! | ATATAGGGGTACAATTGGAA+AGG | - | chr2_3:13550693-13550712 | Msa0279510:intron | 35.0% |
| ! | AAGTTCCCCCATTACTATTT+TGG | - | chr2_3:13551000-13551019 | Msa0279510:intron | 35.0% |
| CATGTCCAAAATAGTAATGG+GGG | + | chr2_3:13551008-13551027 | None:intergenic | 35.0% | |
| GTTCGGATTCTAATAATGAG+AGG | + | chr2_3:13551036-13551055 | None:intergenic | 35.0% | |
| AATCCGAACCGTTAAAAAGT+GGG | - | chr2_3:13551047-13551066 | Msa0279510:intron | 35.0% | |
| !!! | TTTTGCACCCCACTTTTTAA+CGG | + | chr2_3:13551058-13551077 | None:intergenic | 35.0% |
| AGGGTCGTTGATCAAATAAA+CGG | + | chr2_3:13551149-13551168 | None:intergenic | 35.0% | |
| GAAATGTTAAGGCTAGAAAC+GGG | + | chr2_3:13551530-13551549 | None:intergenic | 35.0% | |
| GGAAATGTTAAGGCTAGAAA+CGG | + | chr2_3:13551531-13551550 | None:intergenic | 35.0% | |
| !! | TTTTCTAGATCTAGGACCAT+AGG | + | chr2_3:13551565-13551584 | None:intergenic | 35.0% |
| !!! | CCTTTGTTTTTTGTCTGTTC+CGG | - | chr2_3:13551599-13551618 | Msa0279510:intron | 35.0% |
| ! | CAAAGCACCAAGTATTAAAC+CGG | + | chr2_3:13551621-13551640 | None:intergenic | 35.0% |
| !! | GTTGGCACAGTTTTATGATT+TGG | - | chr2_3:13551659-13551678 | Msa0279510:intron | 35.0% |
| !!! | TTTTGAGAATGTTGGTGTTG+TGG | - | chr2_3:13551720-13551739 | Msa0279510:intron | 35.0% |
| AACACATAACCAAAATCAGC+AGG | + | chr2_3:13551800-13551819 | None:intergenic | 35.0% | |
| ! | TAATGATTCTCATTTGCTGC+AGG | - | chr2_3:13551859-13551878 | Msa0279510:intron | 35.0% |
| CATCAAAAGCTCTTTGAACT+TGG | - | chr2_3:13551914-13551933 | Msa0279510:intron | 35.0% | |
| !!! | GCAAAGCTGAATTTTTTCAC+TGG | + | chr2_3:13552177-13552196 | None:intergenic | 35.0% |
| AAGTGGTTGAATAGTGTAGT+TGG | - | chr2_3:13552427-13552446 | Msa0279510:intron | 35.0% | |
| GCACATTATTGTGAAGAAAG+AGG | + | chr2_3:13552505-13552524 | None:intergenic | 35.0% | |
| CTTTCTTCACAATAATGTGC+AGG | - | chr2_3:13552505-13552524 | Msa0279510:intron | 35.0% | |
| TCACAATAATGTGCAGGAAA+AGG | - | chr2_3:13552511-13552530 | Msa0279510:intron | 35.0% | |
| TCAAGTGGAAAGAAATGGAA+AGG | - | chr2_3:13552585-13552604 | Msa0279510:intron | 35.0% | |
| TCCCATAATCTTCATTGTGT+TGG | + | chr2_3:13552632-13552651 | None:intergenic | 35.0% | |
| ! | GTTTCTTTTAGACCACCACA+TGG | - | chr2_3:13544463-13544482 | Msa0279510:three_prime_UTR | 40.0% |
| CAAACCTGGAATGCATTATC+TGG | + | chr2_3:13544529-13544548 | None:intergenic | 40.0% | |
| GCACTTGTGGTATGTACAAT+TGG | - | chr2_3:13544695-13544714 | Msa0279510:three_prime_UTR | 40.0% | |
| CTTGTGGTATGTACAATTGG+TGG | - | chr2_3:13544698-13544717 | Msa0279510:three_prime_UTR | 40.0% | |
| AAGCAAGCTATCGAACAAAG+AGG | + | chr2_3:13545324-13545343 | None:intergenic | 40.0% | |
| !! | ATAAGTTGGTGACTGTTGTG+AGG | - | chr2_3:13545381-13545400 | Msa0279510:intron | 40.0% |
| TAAGAGCTCGAAAAAAGGTG+TGG | - | chr2_3:13545419-13545438 | Msa0279510:intron | 40.0% | |
| !! | TCACTTGCTGTGAATCTCTT+CGG | - | chr2_3:13545542-13545561 | Msa0279510:intron | 40.0% |
| AGTGGGTGTGTAGAAATCTA+AGG | - | chr2_3:13546077-13546096 | Msa0279510:intron | 40.0% | |
| GTGGGTGTGTAGAAATCTAA+GGG | - | chr2_3:13546078-13546097 | Msa0279510:intron | 40.0% | |
| !!! | GGACTCACATTTTGAGATGT+AGG | - | chr2_3:13546768-13546787 | Msa0279510:intron | 40.0% |
| AGACAAGAAATGGAGTAAGG+AGG | + | chr2_3:13546863-13546882 | None:intergenic | 40.0% | |
| ACAGCGAACTTAATAGCGAT+AGG | + | chr2_3:13546987-13547006 | None:intergenic | 40.0% | |
| ! | GAATCTCGAAAGGGTGTATT+AGG | - | chr2_3:13547032-13547051 | Msa0279510:intron | 40.0% |
| CAGAGTAGAAGATGCCTATT+AGG | + | chr2_3:13547071-13547090 | None:intergenic | 40.0% | |
| TCAAGTAATCACGTCCCATA+TGG | - | chr2_3:13548055-13548074 | Msa0279510:intron | 40.0% | |
| AGAATGACAAGGAGAGAAGA+TGG | - | chr2_3:13548574-13548593 | Msa0279510:intron | 40.0% | |
| AGGAAGAGATGCTCCATTTA+CGG | + | chr2_3:13548612-13548631 | None:intergenic | 40.0% | |
| CTCTTCCACAATCAACTCAT+GGG | + | chr2_3:13548969-13548988 | None:intergenic | 40.0% | |
| TCTCTTCCACAATCAACTCA+TGG | + | chr2_3:13548970-13548989 | None:intergenic | 40.0% | |
| CGCAATACCGTAATATTGGT+TGG | - | chr2_3:13549663-13549682 | Msa0279510:intron | 40.0% | |
| GACTTTCCACATGACAATCA+AGG | - | chr2_3:13550824-13550843 | Msa0279510:intron | 40.0% | |
| !! | CTTTAGCCTTGATTGTCATG+TGG | + | chr2_3:13550833-13550852 | None:intergenic | 40.0% |
| GACAATCAAGGCTAAAGATG+TGG | - | chr2_3:13550836-13550855 | Msa0279510:intron | 40.0% | |
| GAATCCGAACCGTTAAAAAG+TGG | - | chr2_3:13551046-13551065 | Msa0279510:intron | 40.0% | |
| ATCCGAACCGTTAAAAAGTG+GGG | - | chr2_3:13551048-13551067 | Msa0279510:intron | 40.0% | |
| ! | CACGGAATATGGGTTAAAAC+AGG | - | chr2_3:13551089-13551108 | Msa0279510:intron | 40.0% |
| ! | TGATTTAAGATCAGACGACC+TGG | - | chr2_3:13551203-13551222 | Msa0279510:intron | 40.0% |
| AATGAGTTTGTGAAGGGAGT+GGG | + | chr2_3:13551290-13551309 | None:intergenic | 40.0% | |
| CCGGAACAGACAAAAAACAA+AGG | + | chr2_3:13551602-13551621 | None:intergenic | 40.0% | |
| GTCTGTTCCGGTTTAATACT+TGG | - | chr2_3:13551611-13551630 | Msa0279510:intron | 40.0% | |
| !!! | TTGGTGCTTTGATTCGGTTT+TGG | - | chr2_3:13551630-13551649 | Msa0279510:intron | 40.0% |
| !! | GCACAGTTTTATGATTTGGC+CGG | - | chr2_3:13551663-13551682 | Msa0279510:intron | 40.0% |
| !! | GTTTTATGATTTGGCCGGTT+TGG | - | chr2_3:13551668-13551687 | Msa0279510:intron | 40.0% |
| ACACAGTAACACATCCAAAC+CGG | + | chr2_3:13551685-13551704 | None:intergenic | 40.0% | |
| GGTTATTCAGAATGGGGAAT+AGG | + | chr2_3:13552853-13552872 | None:intergenic | 40.0% | |
| GGTGGTCTAAAAGAAACAGC+AGG | + | chr2_3:13544460-13544479 | None:intergenic | 45.0% | |
| ACCACATGGAATCAGTGCAA+GGG | - | chr2_3:13544477-13544496 | Msa0279510:three_prime_UTR | 45.0% | |
| ATGCATTATCTGGCCTGTTG+TGG | + | chr2_3:13544519-13544538 | None:intergenic | 45.0% | |
| TTCTTTGCCAGGTTGCTCTA+TGG | - | chr2_3:13544636-13544655 | Msa0279510:three_prime_UTR | 45.0% | |
| TGATGTTCCATAGAGCAACC+TGG | + | chr2_3:13544646-13544665 | None:intergenic | 45.0% | |
| CCAAGAGGAGATTAGAGTTC+AGG | + | chr2_3:13545185-13545204 | None:intergenic | 45.0% | |
| CCTGAACTCTAATCTCCTCT+TGG | - | chr2_3:13545182-13545201 | Msa0279510:intron | 45.0% | |
| !! | ATCTCTTCGGCCGTTTTAAG+TGG | - | chr2_3:13545555-13545574 | Msa0279510:intron | 45.0% |
| GGAGAACGTTGGTACCTAAT+AGG | - | chr2_3:13547054-13547073 | Msa0279510:intron | 45.0% | |
| TGGAATCAGACAACCAACCT+TGG | - | chr2_3:13547095-13547114 | Msa0279510:intron | 45.0% | |
| TCAGACAACCAACCTTGGTA+AGG | - | chr2_3:13547100-13547119 | Msa0279510:intron | 45.0% | |
| TTGGCATTCCTTACCAAGGT+TGG | + | chr2_3:13547111-13547130 | None:intergenic | 45.0% | |
| ! | ATGGAGCATCTCTTCCTGTT+TGG | - | chr2_3:13548615-13548634 | Msa0279510:intron | 45.0% |
| ! | GTAGGAGTTGATCTCCAAAC+AGG | + | chr2_3:13548632-13548651 | None:intergenic | 45.0% |
| !! | AGAGTCCCATGAGTTGATTG+TGG | - | chr2_3:13548961-13548980 | Msa0279510:intron | 45.0% |
| !!! | CACCCCACTTTTTAACGGTT+CGG | + | chr2_3:13551053-13551072 | None:intergenic | 45.0% |
| TTAAAACAGGCCCAAGTGCT+TGG | - | chr2_3:13551102-13551121 | Msa0279510:intron | 45.0% | |
| TAAAACAGGCCCAAGTGCTT+GGG | - | chr2_3:13551103-13551122 | Msa0279510:intron | 45.0% | |
| ACAGCTATCATCACATCACC+CGG | + | chr2_3:13551182-13551201 | None:intergenic | 45.0% | |
| GAATGAGTTTGTGAAGGGAG+TGG | + | chr2_3:13551291-13551310 | None:intergenic | 45.0% | |
| !! | ATTCGGTTTTGGCGTTGAGT+TGG | - | chr2_3:13551641-13551660 | Msa0279510:intron | 45.0% |
| !! | GTGTTGTGGTGTTGTGATTC+TGG | - | chr2_3:13551734-13551753 | Msa0279510:intron | 45.0% |
| !!! | GAGTTTGTGCCTGCTGATTT+TGG | - | chr2_3:13551788-13551807 | Msa0279510:intron | 45.0% |
| ! | TGCAGGAAAAGGAAGCACAA+TGG | - | chr2_3:13552522-13552541 | Msa0279510:intron | 45.0% |
| ! | GCAGGAAAAGGAAGCACAAT+GGG | - | chr2_3:13552523-13552542 | Msa0279510:intron | 45.0% |
| ! | AAGGAAGCACAATGGGATCA+TGG | - | chr2_3:13552530-13552549 | Msa0279510:intron | 45.0% |
| ! | AGGAAGCACAATGGGATCAT+GGG | - | chr2_3:13552531-13552550 | Msa0279510:intron | 45.0% |
| TAGGCTATAGATACAGCAGC+AGG | - | chr2_3:13552793-13552812 | Msa0279510:intron | 45.0% | |
| TTCAGAATGGGGAATAGGTC+CGG | + | chr2_3:13552848-13552867 | None:intergenic | 45.0% | |
| !!! | TTTATTTTTTTTTTTGAAAA+AGG | + | chr2_3:13548381-13548400 | None:intergenic | 5.0% |
| GCAGGTGCACGTAAATAGAC+TGG | + | chr2_3:13544442-13544461 | None:intergenic | 50.0% | |
| !! | CTTGCACTGATTCCATGTGG+TGG | + | chr2_3:13544478-13544497 | None:intergenic | 50.0% |
| CACCACATGGAATCAGTGCA+AGG | - | chr2_3:13544476-13544495 | Msa0279510:three_prime_UTR | 50.0% | |
| CAGGCCAGATAATGCATTCC+AGG | - | chr2_3:13544522-13544541 | Msa0279510:three_prime_UTR | 50.0% | |
| TCGTGTGCAGGAATCTCGAA+AGG | - | chr2_3:13547022-13547041 | Msa0279510:intron | 50.0% | |
| CGTGTGCAGGAATCTCGAAA+GGG | - | chr2_3:13547023-13547042 | Msa0279510:intron | 50.0% | |
| GGGTGTATTAGGGAGAACGT+TGG | - | chr2_3:13547043-13547062 | Msa0279510:intron | 50.0% | |
| TGGGCCACAGAGATTGAATC+TGG | - | chr2_3:13551122-13551141 | Msa0279510:intron | 50.0% | |
| GGGCCACAGAGATTGAATCT+GGG | - | chr2_3:13551123-13551142 | Msa0279510:intron | 50.0% | |
| AACGACCCTGATCTGATCAC+CGG | - | chr2_3:13551160-13551179 | Msa0279510:intron | 50.0% | |
| ATCACCCGGTGATCAGATCA+GGG | + | chr2_3:13551168-13551187 | None:intergenic | 50.0% | |
| ATCAGACGACCTGGATCTGA+GGG | - | chr2_3:13551212-13551231 | Msa0279510:intron | 50.0% | |
| AGGGTGCACAGCTATAGCTT+AGG | - | chr2_3:13551231-13551250 | Msa0279510:intron | 50.0% | |
| TATAGCTTAGGCATACCGCG+TGG | - | chr2_3:13551243-13551262 | Msa0279510:intron | 50.0% | |
| ATACCGCGTGGAATCAGAGA+GGG | - | chr2_3:13551255-13551274 | Msa0279510:intron | 50.0% | |
| TATCCCTCTCTGATTCCACG+CGG | + | chr2_3:13551261-13551280 | None:intergenic | 50.0% | |
| AGGCTAGAAACGGGAAGAGA+AGG | + | chr2_3:13551521-13551540 | None:intergenic | 50.0% | |
| !! | GCCCTTGCACTGATTCCATG+TGG | + | chr2_3:13544481-13544500 | None:intergenic | 55.0% |
| GGCATCTTCTACTCTGCAGC+TGG | - | chr2_3:13547075-13547094 | Msa0279510:intron | 55.0% | |
| TCTCTGTGGCCCAAGCACTT+GGG | + | chr2_3:13551115-13551134 | None:intergenic | 55.0% | |
| ATCTCTGTGGCCCAAGCACT+TGG | + | chr2_3:13551116-13551135 | None:intergenic | 55.0% | |
| CGGCCCAGATTCAATCTCTG+TGG | + | chr2_3:13551129-13551148 | None:intergenic | 55.0% | |
| ACGACCCTGATCTGATCACC+GGG | - | chr2_3:13551161-13551180 | Msa0279510:intron | 55.0% | |
| CATCACCCGGTGATCAGATC+AGG | + | chr2_3:13551169-13551188 | None:intergenic | 55.0% | |
| GATCAGACGACCTGGATCTG+AGG | - | chr2_3:13551211-13551230 | Msa0279510:intron | 55.0% | |
| CATACCGCGTGGAATCAGAG+AGG | - | chr2_3:13551254-13551273 | Msa0279510:intron | 55.0% | |
| AGCTGTGCACCCTCAGATCC+AGG | + | chr2_3:13551224-13551243 | None:intergenic | 60.0% | |
| GAGAAGACGGGAAGGGGAGA+GGG | + | chr2_3:13551367-13551386 | None:intergenic | 60.0% | |
| TCTCCCCTTCCCGTCTTCTC+CGG | - | chr2_3:13551367-13551386 | Msa0279510:intron | 60.0% | |
| GTCGTAAGCTGTTCCAGCGG+CGG | + | chr2_3:13551416-13551435 | None:intergenic | 60.0% | |
| CGCGTCGTAAGCTGTTCCAG+CGG | + | chr2_3:13551419-13551438 | None:intergenic | 60.0% | |
| CGCTGGAACAGCTTACGACG+CGG | - | chr2_3:13551417-13551436 | Msa0279510:intron | 60.0% | |
| ACAGCTTACGACGCGGTGAC+CGG | - | chr2_3:13551424-13551443 | Msa0279510:intron | 60.0% | |
| GGAGAAGACGGGAAGGGGAG+AGG | + | chr2_3:13551368-13551387 | None:intergenic | 65.0% | |
| CCACCGGAGAAGACGGGAAG+GGG | + | chr2_3:13551373-13551392 | None:intergenic | 65.0% | |
| CCCACCGGAGAAGACGGGAA+GGG | + | chr2_3:13551374-13551393 | None:intergenic | 65.0% | |
| CCCTTCCCGTCTTCTCCGGT+GGG | - | chr2_3:13551371-13551390 | Msa0279510:intron | 65.0% | |
| CCTTCCCGTCTTCTCCGGTG+GGG | - | chr2_3:13551372-13551391 | Msa0279510:intron | 65.0% | |
| GGAACCCCACCGGAGAAGAC+GGG | + | chr2_3:13551379-13551398 | None:intergenic | 65.0% | |
| CGGAACCCCACCGGAGAAGA+CGG | + | chr2_3:13551380-13551399 | None:intergenic | 65.0% | |
| CGTCTTCTCCGGTGGGGTTC+CGG | - | chr2_3:13551378-13551397 | Msa0279510:intron | 65.0% | |
| CCCCTTCCCGTCTTCTCCGG+TGG | - | chr2_3:13551370-13551389 | Msa0279510:intron | 70.0% | |
| CCCCACCGGAGAAGACGGGA+AGG | + | chr2_3:13551375-13551394 | None:intergenic | 70.0% | |
| TTCTCCGGTGGGGTTCCGGC+TGG | - | chr2_3:13551382-13551401 | Msa0279510:intron | 70.0% | |
| TCCGGTGGGGTTCCGGCTGG+TGG | - | chr2_3:13551385-13551404 | Msa0279510:intron | 75.0% | |
| GCCACCAGCCGGAACCCCAC+CGG | + | chr2_3:13551389-13551408 | None:intergenic | 75.0% | |
| GGTGGGGTTCCGGCTGGTGG+CGG | - | chr2_3:13551388-13551407 | Msa0279510:intron | 75.0% | |
| ACGCGGTGACCGGCCGTCCA+AGG | - | chr2_3:13551434-13551453 | Msa0279510:intron | 75.0% | |
| CGGTGACCGGCCGTCCAAGG+TGG | - | chr2_3:13551437-13551456 | Msa0279510:intron | 75.0% | |
| GCGACGCCACCTTGGACGGC+CGG | + | chr2_3:13551446-13551465 | None:intergenic | 75.0% | |
| GGCGGCGACGCCACCTTGGA+CGG | + | chr2_3:13551450-13551469 | None:intergenic | 75.0% | |
| ! | GCGGCGGTTCCGCCACCAGC+CGG | + | chr2_3:13551400-13551419 | None:intergenic | 80.0% |
| !!! | GCTGGTGGCGGAACCGCCGC+TGG | - | chr2_3:13551400-13551419 | Msa0279510:intron | 80.0% |
| ! | TGGCGGCGGCGACGCCACCT+TGG | + | chr2_3:13551454-13551473 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 13544436 | 13552926 | 13544436 | ID=Msa0279510;Name=Msa0279510 |
| chr2_3 | mRNA | 13544436 | 13552926 | 13544436 | ID=Msa0279510-mRNA-1;Parent=Msa0279510;Name=Msa0279510-mRNA-1;_AED=0.50;_eAED=0.50;_QI=0|0.33|0.5|0.5|1|1|4|363|85 |
| chr2_3 | exon | 13544436 | 13544835 | 13544436 | ID=Msa0279510-mRNA-1:exon:5777;Parent=Msa0279510-mRNA-1 |
| chr2_3 | exon | 13545426 | 13545481 | 13545426 | ID=Msa0279510-mRNA-1:exon:5776;Parent=Msa0279510-mRNA-1 |
| chr2_3 | exon | 13552659 | 13552715 | 13552659 | ID=Msa0279510-mRNA-1:exon:5775;Parent=Msa0279510-mRNA-1 |
| chr2_3 | exon | 13552819 | 13552926 | 13552819 | ID=Msa0279510-mRNA-1:exon:5774;Parent=Msa0279510-mRNA-1 |
| chr2_3 | CDS | 13552819 | 13552926 | 13552819 | ID=Msa0279510-mRNA-1:cds;Parent=Msa0279510-mRNA-1 |
| chr2_3 | CDS | 13552659 | 13552715 | 13552659 | ID=Msa0279510-mRNA-1:cds;Parent=Msa0279510-mRNA-1 |
| chr2_3 | CDS | 13545426 | 13545481 | 13545426 | ID=Msa0279510-mRNA-1:cds;Parent=Msa0279510-mRNA-1 |
| chr2_3 | CDS | 13544799 | 13544835 | 13544799 | ID=Msa0279510-mRNA-1:cds;Parent=Msa0279510-mRNA-1 |
| chr2_3 | three_prime_UTR | 13544436 | 13544798 | 13544436 | ID=Msa0279510-mRNA-1:three_prime_utr;Parent=Msa0279510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
