Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0407880 | XP_024634879.1 | 86.441 | 472 | 62 | 1 | 1 | 470 | 309 | 780 | 0.0 | 843 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0407880 | A0A396IRE0 | 92.174 | 345 | 27 | 0 | 126 | 470 | 1 | 345 | 0.0 | 664 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0407880 | 0.824889 | 6.320984e-54 | -8.615850e-47 |
| Msa0101810 | Msa0407880 | -0.823277 | 1.510351e-53 | -8.615850e-47 |
| Msa0110970 | Msa0407880 | 0.800242 | 1.579643e-48 | -8.615850e-47 |
| Msa0142200 | Msa0407880 | 0.805696 | 1.178674e-49 | -8.615850e-47 |
| Msa0157290 | Msa0407880 | 0.825271 | 5.135308e-54 | -8.615850e-47 |
| Msa0227470 | Msa0407880 | 0.827198 | 1.785720e-54 | -8.615850e-47 |
| Msa0407880 | Msa0407900 | 0.988934 | 5.251956e-176 | -8.615850e-47 |
| Msa0407880 | Msa0407910 | 0.944143 | 3.349845e-103 | -8.615850e-47 |
| Msa0407880 | Msa0407920 | 0.938012 | 1.357331e-98 | -8.615850e-47 |
| Msa0407880 | Msa0452920 | 0.811657 | 6.275126e-51 | -8.615850e-47 |
| Msa0407880 | Msa0858840 | 0.809622 | 1.727756e-50 | -8.615850e-47 |
| Msa0407880 | Msa0880140 | 0.826857 | 2.154519e-54 | -8.615850e-47 |
| Msa0407880 | Msa0908050 | 0.800259 | 1.567454e-48 | -8.615850e-47 |
| Msa0407880 | Msa1098560 | 0.808577 | 2.892508e-50 | -8.615850e-47 |
| Msa0407880 | Msa1179460 | 0.809586 | 1.758597e-50 | -8.615850e-47 |
| Msa0407880 | Msa1438250 | 0.809011 | 2.336259e-50 | -8.615850e-47 |
| Msa0362680 | Msa0407880 | 0.801695 | 7.973904e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0407880 | MtrunA17_Chr3g0098481 | 92.174 | 345 | 27 | 0 | 126 | 470 | 1 | 345 | 0.0 | 664 |
| Msa0407880 | MtrunA17_Chr3g0098301 | 66.746 | 421 | 123 | 4 | 45 | 463 | 1 | 406 | 0.0 | 550 |
| Msa0407880 | MtrunA17_Chr3g0098531 | 69.799 | 298 | 89 | 1 | 173 | 470 | 1 | 297 | 1.96e-157 | 448 |
| Msa0407880 | MtrunA17_Chr3g0102001 | 55.732 | 314 | 128 | 4 | 159 | 467 | 439 | 746 | 3.34e-105 | 329 |
| Msa0407880 | MtrunA17_Chr5g0439061 | 56.051 | 314 | 132 | 3 | 159 | 470 | 435 | 744 | 2.31e-104 | 327 |
| Msa0407880 | MtrunA17_Chr2g0286601 | 45.752 | 306 | 158 | 4 | 162 | 466 | 391 | 689 | 1.14e-76 | 253 |
| Msa0407880 | MtrunA17_Chr5g0439051 | 60.976 | 205 | 78 | 1 | 266 | 470 | 20 | 222 | 1.41e-76 | 239 |
| Msa0407880 | MtrunA17_Chr2g0286551 | 44.272 | 323 | 164 | 4 | 153 | 466 | 353 | 668 | 7.48e-70 | 234 |
| Msa0407880 | MtrunA17_Chr5g0439081 | 54.592 | 196 | 86 | 2 | 266 | 461 | 16 | 208 | 1.05e-66 | 213 |
| Msa0407880 | MtrunA17_Chr3g0098511 | 84.314 | 102 | 16 | 0 | 369 | 470 | 1 | 102 | 2.07e-58 | 187 |
| Msa0407880 | MtrunA17_Chr2g0286561 | 46.479 | 213 | 109 | 3 | 256 | 466 | 5 | 214 | 2.48e-53 | 178 |
| Msa0407880 | MtrunA17_Chr5g0443001 | 36.913 | 298 | 173 | 8 | 164 | 457 | 316 | 602 | 7.29e-45 | 165 |
| Msa0407880 | MtrunA17_Chr2g0297701 | 33.333 | 291 | 187 | 4 | 164 | 453 | 282 | 566 | 5.57e-44 | 162 |
| Msa0407880 | MtrunA17_Chr5g0410171 | 30.904 | 343 | 223 | 5 | 120 | 456 | 397 | 731 | 1.82e-43 | 163 |
| Msa0407880 | MtrunA17_Chr2g0297491 | 32.353 | 306 | 191 | 5 | 164 | 463 | 91 | 386 | 7.42e-42 | 153 |
| Msa0407880 | MtrunA17_Chr5g0410271 | 29.464 | 336 | 220 | 4 | 122 | 456 | 5 | 324 | 4.48e-41 | 149 |
| Msa0407880 | MtrunA17_Chr5g0410201 | 31.208 | 298 | 199 | 3 | 160 | 456 | 33 | 325 | 1.94e-40 | 147 |
| Msa0407880 | MtrunA17_Chr2g0297681 | 31.126 | 302 | 201 | 5 | 164 | 463 | 402 | 698 | 8.86e-40 | 152 |
| Msa0407880 | MtrunA17_Chr6g0456141 | 32.283 | 254 | 166 | 3 | 160 | 412 | 92 | 340 | 1.54e-39 | 147 |
| Msa0407880 | MtrunA17_Chr5g0410341 | 30.820 | 305 | 191 | 4 | 160 | 456 | 451 | 743 | 3.10e-39 | 150 |
| Msa0407880 | MtrunA17_Chr6g0456101 | 34.749 | 259 | 163 | 3 | 160 | 417 | 449 | 702 | 4.42e-39 | 150 |
| Msa0407880 | MtrunA17_Chr6g0457101 | 31.801 | 261 | 172 | 3 | 158 | 417 | 394 | 649 | 5.68e-39 | 150 |
| Msa0407880 | MtrunA17_Chr3g0100301 | 39.234 | 209 | 120 | 4 | 242 | 447 | 196 | 400 | 1.63e-38 | 144 |
| Msa0407880 | MtrunA17_Chr2g0297481 | 32.000 | 300 | 182 | 8 | 164 | 457 | 189 | 472 | 6.70e-38 | 144 |
| Msa0407880 | MtrunA17_Chr2g0297691 | 30.921 | 304 | 199 | 6 | 164 | 463 | 404 | 700 | 7.09e-38 | 147 |
| Msa0407880 | MtrunA17_Chr5g0410371 | 32.166 | 314 | 197 | 7 | 162 | 470 | 2 | 304 | 1.59e-37 | 139 |
| Msa0407880 | MtrunA17_Chr3g0100741 | 32.248 | 307 | 193 | 8 | 145 | 447 | 292 | 587 | 6.52e-37 | 143 |
| Msa0407880 | MtrunA17_Chr2g0297711 | 31.164 | 292 | 191 | 6 | 167 | 457 | 245 | 527 | 5.76e-36 | 139 |
| Msa0407880 | MtrunA17_Chr2g0297651 | 31.699 | 306 | 187 | 9 | 164 | 460 | 404 | 696 | 1.75e-35 | 139 |
| Msa0407880 | MtrunA17_Chr2g0284501 | 35.075 | 268 | 162 | 6 | 184 | 450 | 392 | 648 | 4.29e-35 | 138 |
| Msa0407880 | MtrunA17_Chr5g0410461 | 29.560 | 318 | 212 | 6 | 153 | 465 | 160 | 470 | 9.55e-35 | 135 |
| Msa0407880 | MtrunA17_Chr2g0284541 | 33.333 | 318 | 192 | 6 | 159 | 469 | 351 | 655 | 1.05e-33 | 134 |
| Msa0407880 | MtrunA17_Chr5g0410581 | 29.710 | 276 | 190 | 3 | 153 | 427 | 491 | 763 | 1.40e-33 | 134 |
| Msa0407880 | MtrunA17_Chr3g0096941 | 31.596 | 307 | 195 | 8 | 145 | 447 | 293 | 588 | 5.95e-32 | 129 |
| Msa0407880 | MtrunA17_Chr5g0410191 | 32.967 | 182 | 118 | 2 | 276 | 456 | 12 | 190 | 3.31e-29 | 113 |
| Msa0407880 | MtrunA17_Chr5g0410541 | 36.806 | 144 | 91 | 0 | 281 | 424 | 38 | 181 | 1.83e-24 | 101 |
| Msa0407880 | MtrunA17_Chr5g0439041 | 45.536 | 112 | 55 | 2 | 159 | 266 | 59 | 168 | 4.58e-22 | 94.4 |
| Msa0407880 | MtrunA17_Chr5g0410451 | 31.928 | 166 | 112 | 1 | 260 | 424 | 35 | 200 | 3.19e-21 | 92.4 |
| Msa0407880 | MtrunA17_Chr5g0410511 | 32.240 | 183 | 117 | 4 | 268 | 446 | 4 | 183 | 1.18e-18 | 84.3 |
| Msa0407880 | MtrunA17_Chr2g0297611 | 36.667 | 90 | 56 | 1 | 271 | 360 | 1 | 89 | 4.02e-16 | 73.6 |
| Msa0407880 | MtrunA17_Chr5g0410181 | 31.579 | 133 | 87 | 2 | 325 | 456 | 2 | 131 | 6.51e-16 | 74.3 |
| Msa0407880 | MtrunA17_Chr1g0211531 | 24.510 | 306 | 206 | 8 | 160 | 453 | 239 | 531 | 9.48e-14 | 73.6 |
| Msa0407880 | MtrunA17_Chr1g0211541 | 24.779 | 226 | 157 | 5 | 153 | 374 | 211 | 427 | 1.51e-12 | 69.7 |
| Msa0407880 | MtrunA17_Chr1g0211511 | 23.826 | 298 | 200 | 8 | 160 | 439 | 16 | 304 | 3.51e-12 | 67.4 |
| Msa0407880 | MtrunA17_Chr2g0297521 | 32.143 | 84 | 57 | 0 | 258 | 341 | 1 | 84 | 3.72e-12 | 62.0 |
| Msa0407880 | MtrunA17_Chr3g0100921 | 30.597 | 134 | 90 | 2 | 315 | 447 | 2 | 133 | 3.24e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0407880 | AT3G18670.1 | 29.670 | 364 | 238 | 8 | 106 | 457 | 227 | 584 | 5.15e-49 | 177 |
| Msa0407880 | AT3G18670.2 | 31.024 | 332 | 217 | 6 | 132 | 457 | 314 | 639 | 1.00e-48 | 177 |
| Msa0407880 | AT5G35810.1 | 31.699 | 306 | 198 | 5 | 155 | 454 | 29 | 329 | 1.88e-43 | 157 |
| Msa0407880 | AT5G04690.1 | 35.745 | 235 | 143 | 4 | 227 | 459 | 386 | 614 | 2.26e-42 | 159 |
| Msa0407880 | AT5G04690.3 | 35.745 | 235 | 143 | 4 | 227 | 459 | 406 | 634 | 2.97e-42 | 159 |
| Msa0407880 | AT5G04690.2 | 35.745 | 235 | 143 | 4 | 227 | 459 | 420 | 648 | 3.64e-42 | 159 |
| Msa0407880 | AT5G04700.1 | 33.333 | 315 | 193 | 7 | 152 | 459 | 354 | 658 | 4.04e-42 | 159 |
| Msa0407880 | AT3G54065.1 | 35.211 | 213 | 129 | 3 | 252 | 457 | 8 | 218 | 6.43e-38 | 138 |
| Msa0407880 | AT5G04730.1 | 30.844 | 308 | 192 | 8 | 160 | 459 | 297 | 591 | 4.44e-36 | 141 |
| Msa0407880 | AT5G04680.2 | 31.464 | 321 | 199 | 8 | 152 | 459 | 218 | 530 | 1.90e-35 | 139 |
| Msa0407880 | AT5G04680.3 | 31.153 | 321 | 200 | 7 | 152 | 459 | 327 | 639 | 2.82e-35 | 139 |
| Msa0407880 | AT5G04680.1 | 31.464 | 321 | 199 | 8 | 152 | 459 | 370 | 682 | 3.23e-35 | 139 |
| Msa0407880 | AT5G04680.4 | 31.153 | 321 | 200 | 7 | 152 | 459 | 341 | 653 | 3.57e-35 | 139 |
Find 100 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCTATTTGTATCATTATA+AGG | 0.224560 | 3_2:+47037427 | Msa0407880:three_prime_UTR |
| TGCTTGCCTCTCACATTCTA+TGG | 0.260173 | 3_2:+47037159 | Msa0407880:CDS |
| AACCCCAGGTGAAATCTTTA+AGG | 0.271604 | 3_2:+47036711 | Msa0407880:CDS |
| TCAATATATACTGCAGAAAA+AGG | 0.284736 | 3_2:+47033676 | Msa0407880:five_prime_UTR |
| ATGTTCATTTCTTTCATTGC+TGG | 0.288747 | 3_2:+47037069 | Msa0407880:CDS |
| AAGTGGCGTAGTTGAAATTA+TGG | 0.312736 | 3_2:+47035857 | Msa0407880:CDS |
| AATTCATCAACATTGTATAA+TGG | 0.327435 | 3_2:-47033712 | None:intergenic |
| CTTCTTTGTTGCTTCTATGA+TGG | 0.336687 | 3_2:-47036684 | None:intergenic |
| CCTGTTTCCTGATTGCCTCC+AGG | 0.337339 | 3_2:-47036850 | None:intergenic |
| GATCAAGATATAACGGAAAC+TGG | 0.338760 | 3_2:-47037188 | None:intergenic |
| TTCAAGTGCACGCATGATTT+CGG | 0.351916 | 3_2:-47036009 | None:intergenic |
| TTTCTGCAGTATATATTGAT+AGG | 0.357190 | 3_2:-47033672 | None:intergenic |
| CATTGTCAGAGTTAGTTTCA+TGG | 0.358694 | 3_2:-47036052 | None:intergenic |
| TTTGCTGTATCTTCATTAGT+TGG | 0.362700 | 3_2:+47036910 | Msa0407880:CDS |
| CCTGGAGGCAATCAGGAAAC+AGG | 0.362749 | 3_2:+47036850 | Msa0407880:CDS |
| TCCTTTCTATACTCACTTCT+CGG | 0.368888 | 3_2:+47036965 | Msa0407880:CDS |
| AAATGTTTGTATTAACCATA+TGG | 0.371774 | 3_2:+47033809 | Msa0407880:exon |
| AAAACTGCTTGGAGGATATC+TGG | 0.377606 | 3_2:+47036236 | Msa0407880:CDS |
| CGCAAGTTGTTGAGGGGTTG+TGG | 0.380881 | 3_2:+47036111 | Msa0407880:CDS |
| TATTATTATGTTTAGAGTAC+TGG | 0.381383 | 3_2:+47037384 | Msa0407880:three_prime_UTR |
| AAGAAAGAAATCAAAACAAA+TGG | 0.391933 | 3_2:+47035761 | Msa0407880:CDS |
| TGTTGCTTCTATGATGGTAA+TGG | 0.392154 | 3_2:-47036678 | None:intergenic |
| AGCTTAACACCCTTGATACT+TGG | 0.393569 | 3_2:-47037243 | None:intergenic |
| TTTATTACTTGTAGCAATGA+AGG | 0.395604 | 3_2:+47035920 | Msa0407880:CDS |
| CTGTTTCCTGATTGCCTCCA+GGG | 0.400780 | 3_2:-47036849 | None:intergenic |
| TGGATTGAAACTCATGAGTT+TGG | 0.409080 | 3_2:+47037297 | Msa0407880:three_prime_UTR |
| TCCTCCTTAAAGATTTCACC+TGG | 0.410908 | 3_2:-47036715 | None:intergenic |
| GTTGTGGAAGAGGCTTTCTA+TGG | 0.418288 | 3_2:+47036127 | Msa0407880:CDS |
| CAACGTCCCTGGAGGCAATC+AGG | 0.419195 | 3_2:+47036843 | Msa0407880:CDS |
| GGCGTCTCCTTTGCTACATC+AGG | 0.434602 | 3_2:+47036820 | Msa0407880:CDS |
| TTGTTGAGGGGTTGTGGAAG+AGG | 0.439045 | 3_2:+47036117 | Msa0407880:CDS |
| CATATTCGGTAGCCAGCTCT+TGG | 0.441519 | 3_2:+47034404 | Msa0407880:CDS |
| CTTCTATGATGGTAATGGTC+TGG | 0.452731 | 3_2:-47036673 | None:intergenic |
| GGGGCTCATCCCTTGGATTA+CGG | 0.453441 | 3_2:+47034468 | Msa0407880:CDS |
| TCATAAATGCTTCCAAGAGC+TGG | 0.458200 | 3_2:-47034416 | None:intergenic |
| GTTAAGAAGAAGCACATATT+CGG | 0.460043 | 3_2:+47034390 | Msa0407880:CDS |
| ACAGGGAAACCAACATTTGA+AGG | 0.475667 | 3_2:+47036868 | Msa0407880:CDS |
| AACCTTAGGGGCAATGAAGA+TGG | 0.479996 | 3_2:+47034368 | Msa0407880:intron |
| GAAGGGCAACCAGCATTTGA+AGG | 0.483339 | 3_2:+47036886 | Msa0407880:CDS |
| TGAAAATAGGGTATGCCATA+TGG | 0.485165 | 3_2:-47033824 | None:intergenic |
| ATAGAACAAGATACCACTCT+TGG | 0.493665 | 3_2:-47037121 | None:intergenic |
| CTCCTTAAAGATTTCACCTG+GGG | 0.497170 | 3_2:-47036713 | None:intergenic |
| GCTACATCAGGCAACGTCCC+TGG | 0.497506 | 3_2:+47036832 | Msa0407880:CDS |
| AGAGCTTAATTCAAAAGTAA+AGG | 0.498132 | 3_2:+47035881 | Msa0407880:CDS |
| GTGTGGTGGGGCTCATCCCT+TGG | 0.500121 | 3_2:+47034461 | Msa0407880:CDS |
| GAATGTGAGAGGCAAGCAAA+TGG | 0.502669 | 3_2:-47037154 | None:intergenic |
| GTTGTAGCAGCACTCGTCGC+AGG | 0.505518 | 3_2:+47036799 | Msa0407880:CDS |
| AGAAAGAAATCAAAACAAAT+GGG | 0.508367 | 3_2:+47035762 | Msa0407880:CDS |
| GGTGCCACCACCAAGTATCA+AGG | 0.511463 | 3_2:+47037233 | Msa0407880:CDS |
| TTGAGAAGATCAAGATATAA+CGG | 0.512499 | 3_2:-47037195 | None:intergenic |
| CCACACATGTATGACTCATA+AGG | 0.512671 | 3_2:-47034444 | None:intergenic |
| TTGATCTTCTCAAAGTTACA+TGG | 0.512948 | 3_2:+47037205 | Msa0407880:CDS |
| AGAAATGAACATGGCAACAA+TGG | 0.515982 | 3_2:-47037058 | None:intergenic |
| ACAGCAAATCCTTCAAATGC+TGG | 0.519658 | 3_2:-47036895 | None:intergenic |
| TTAACACCCTTGATACTTGG+TGG | 0.523933 | 3_2:-47037240 | None:intergenic |
| GCTGGTTGCCCTTCAAATGT+TGG | 0.529783 | 3_2:-47036877 | None:intergenic |
| ATGAGTCATACATGTGTGGT+GGG | 0.531314 | 3_2:+47034448 | Msa0407880:CDS |
| CACAACCCCTCAACAACTTG+CGG | 0.534637 | 3_2:-47036110 | None:intergenic |
| TTGAAAGTGTCATGCACGAA+AGG | 0.536960 | 3_2:+47034529 | Msa0407880:CDS |
| TTGTTGATTTATGCTCTGAA+AGG | 0.537416 | 3_2:-47036153 | None:intergenic |
| AGACAACCGCAAGTTGTTGA+GGG | 0.537910 | 3_2:+47036104 | Msa0407880:CDS |
| GTAAAGGCATCTGACAAGAA+AGG | 0.540805 | 3_2:+47035897 | Msa0407880:CDS |
| CATCATAGAAGCAACAAAGA+AGG | 0.547820 | 3_2:+47036685 | Msa0407880:CDS |
| TCCGAGAAGTGAGTATAGAA+AGG | 0.552792 | 3_2:-47036966 | None:intergenic |
| GTCATGTTCTCCGTAATCCA+AGG | 0.556822 | 3_2:-47034478 | None:intergenic |
| TAGACAACCGCAAGTTGTTG+AGG | 0.558579 | 3_2:+47036103 | Msa0407880:CDS |
| GATGTCCCACATCATTTGCA+TGG | 0.565189 | 3_2:-47036264 | None:intergenic |
| CCTCCTTAAAGATTTCACCT+GGG | 0.568420 | 3_2:-47036714 | None:intergenic |
| TATGAGTCATACATGTGTGG+TGG | 0.583051 | 3_2:+47034447 | Msa0407880:CDS |
| AAATCAAAACAAATGGGAGA+AGG | 0.587759 | 3_2:+47035768 | Msa0407880:CDS |
| TATTTGCGTGCAGCAAAACA+TGG | 0.589012 | 3_2:+47035981 | Msa0407880:CDS |
| GACGTTGCCTGATGTAGCAA+AGG | 0.589787 | 3_2:-47036827 | None:intergenic |
| ATGGTCTACTCAGTCACCGT+GGG | 0.591157 | 3_2:+47033861 | Msa0407880:CDS |
| ACACCCTTGATACTTGGTGG+TGG | 0.591476 | 3_2:-47037237 | None:intergenic |
| GTGGGACATCAAGTGGTACA+AGG | 0.594742 | 3_2:+47036277 | Msa0407880:CDS |
| TCAAGGGTGTTAAGCTGTAG+AGG | 0.595960 | 3_2:+47037250 | Msa0407880:CDS |
| ACAGATAAATATTCCAAGAG+TGG | 0.603652 | 3_2:+47037108 | Msa0407880:CDS |
| CTGGAGGCAATCAGGAAACA+GGG | 0.606342 | 3_2:+47036851 | Msa0407880:CDS |
| GAATTACCAGCAAAGAAAAG+TGG | 0.610189 | 3_2:+47035942 | Msa0407880:CDS |
| CAGGGAAACCAACATTTGAA+GGG | 0.612015 | 3_2:+47036869 | Msa0407880:CDS |
| AGTGTCATGCACGAAAGGAA+AGG | 0.614504 | 3_2:+47034534 | Msa0407880:CDS |
| GTGCGGCCATGCAAATGATG+TGG | 0.618816 | 3_2:+47036258 | Msa0407880:CDS |
| TCTCAAAGTTACATGGAGGA+AGG | 0.625653 | 3_2:+47037212 | Msa0407880:CDS |
| GTGCCACCACCAAGTATCAA+GGG | 0.630567 | 3_2:+47037234 | Msa0407880:CDS |
| TCATGTTCTCCGTAATCCAA+GGG | 0.632076 | 3_2:-47034477 | None:intergenic |
| TTCTAGATAAAAGCATTGAG+TGG | 0.638047 | 3_2:+47036749 | Msa0407880:CDS |
| GACAACCGCAAGTTGTTGAG+GGG | 0.642150 | 3_2:+47036105 | Msa0407880:CDS |
| TGAGTCATACATGTGTGGTG+GGG | 0.648242 | 3_2:+47034449 | Msa0407880:CDS |
| CCCAGGTGAAATCTTTAAGG+AGG | 0.655968 | 3_2:+47036714 | Msa0407880:CDS |
| TGCGGCCATGCAAATGATGT+GGG | 0.663238 | 3_2:+47036259 | Msa0407880:CDS |
| GATGGTCTACTCAGTCACCG+TGG | 0.671545 | 3_2:+47033860 | Msa0407880:CDS |
| ACAACTCCATAGAATGTGAG+AGG | 0.673388 | 3_2:-47037165 | None:intergenic |
| ATCTTCTCAAAGTTACATGG+AGG | 0.681695 | 3_2:+47037208 | Msa0407880:CDS |
| AAATGATGTGGGACATCAAG+TGG | 0.684085 | 3_2:+47036270 | Msa0407880:CDS |
| TGCTTGGAGGATATCTGGTG+CGG | 0.697268 | 3_2:+47036241 | Msa0407880:CDS |
| AGCAATGAAAGAAATGAACA+TGG | 0.705741 | 3_2:-47037067 | None:intergenic |
| ACATCAGGCAACGTCCCTGG+AGG | 0.708851 | 3_2:+47036835 | Msa0407880:CDS |
| CCTTATGAGTCATACATGTG+TGG | 0.718357 | 3_2:+47034444 | Msa0407880:CDS |
| TGGTCTACTCAGTCACCGTG+GGG | 0.726499 | 3_2:+47033862 | Msa0407880:CDS |
| TTAGTGATGATACTTCAATG+TGG | 0.781669 | 3_2:+47033633 | Msa0407880:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGCTAATTTTTTAAAAAATA+AGG | - | chr3_2:47033603-47033622 | None:intergenic | 10.0% |
| !! | AATAAATCATGTAAAATTAA+AGG | - | chr3_2:47033909-47033928 | None:intergenic | 10.0% |
| !!! | TTTTAGATACATTTAAAAAT+TGG | + | chr3_2:47034639-47034658 | Msa0407880:intron | 10.0% |
| !! | TACATATATTAAATATTATC+TGG | + | chr3_2:47034671-47034690 | Msa0407880:intron | 10.0% |
| !! | ACATATATTAAATATTATCT+GGG | + | chr3_2:47034672-47034691 | Msa0407880:intron | 10.0% |
| !!! | TAAAAATAGAAGTTTTTTAT+TGG | - | chr3_2:47035530-47035549 | None:intergenic | 10.0% |
| !!! | AATTTTACATGATTTATTTG+TGG | + | chr3_2:47033911-47033930 | Msa0407880:intron | 15.0% |
| !! | AATGTGATCTATTAATTTAA+TGG | + | chr3_2:47034061-47034080 | Msa0407880:intron | 15.0% |
| !! | AGTAAGAACAAAAAAAAAAT+TGG | + | chr3_2:47034558-47034577 | Msa0407880:intron | 15.0% |
| !!! | TATTTTCTTATATATAAGAC+CGG | - | chr3_2:47034613-47034632 | None:intergenic | 15.0% |
| !!! | TGTTTTTAATATAAACCTAA+CGG | - | chr3_2:47034848-47034867 | None:intergenic | 15.0% |
| !!! | GATTAATTTCATATTTTTAG+TGG | + | chr3_2:47035089-47035108 | Msa0407880:intron | 15.0% |
| !!! | TTTTAAGAATACTCATTTTA+AGG | - | chr3_2:47035376-47035395 | None:intergenic | 15.0% |
| !! | ATTCTTAAAAAAGAAATGAA+CGG | + | chr3_2:47035386-47035405 | Msa0407880:intron | 15.0% |
| !! | TAATTTATCATTTCAACATA+TGG | + | chr3_2:47036408-47036427 | Msa0407880:intron | 15.0% |
| !!! | ATAGATTTTTTTTAAGAAGT+AGG | - | chr3_2:47036581-47036600 | None:intergenic | 15.0% |
| !! | AATTCATCAACATTGTATAA+TGG | - | chr3_2:47033715-47033734 | None:intergenic | 20.0% |
| !!! | CAATGTTGATGAATTAAAAA+AGG | + | chr3_2:47033720-47033739 | Msa0407880:five_prime_UTR | 20.0% |
| !! | AAATGTTTGTATTAACCATA+TGG | + | chr3_2:47033809-47033828 | Msa0407880:exon | 20.0% |
| !! | TTCTCACTTATTTACTTTAA+AGG | - | chr3_2:47034203-47034222 | None:intergenic | 20.0% |
| !!! | TTAATTAATTTTGCAACCTT+AGG | + | chr3_2:47034354-47034373 | Msa0407880:intron | 20.0% |
| !!! | TAATTAATTTTGCAACCTTA+GGG | + | chr3_2:47034355-47034374 | Msa0407880:intron | 20.0% |
| !!! | GTTTTTAATATAAACCTAAC+GGG | - | chr3_2:47034847-47034866 | None:intergenic | 20.0% |
| !!! | TTTTTTTTAAAAAACACCGA+CGG | + | chr3_2:47035197-47035216 | Msa0407880:intron | 20.0% |
| !! | AAGAAAGAAATCAAAACAAA+TGG | + | chr3_2:47035761-47035780 | Msa0407880:CDS | 20.0% |
| !! | AGAAAGAAATCAAAACAAAT+GGG | + | chr3_2:47035762-47035781 | Msa0407880:CDS | 20.0% |
| !!! | TGAAAAAGATATGACATTTT+TGG | + | chr3_2:47035824-47035843 | Msa0407880:CDS | 20.0% |
| !!! | GAGATCATATGATATTTTTA+AGG | + | chr3_2:47036344-47036363 | Msa0407880:intron | 20.0% |
| !! | AATACAAAAAACTAAATGGA+AGG | - | chr3_2:47036506-47036525 | None:intergenic | 20.0% |
| !!! | AGTCTTTTAATATACTATAC+AGG | - | chr3_2:47036649-47036668 | None:intergenic | 20.0% |
| !!! | TGTTTTATTATATTGCATTG+TGG | + | chr3_2:47037277-47037296 | Msa0407880:three_prime_UTR | 20.0% |
| !!! | TATTATTATGTTTAGAGTAC+TGG | + | chr3_2:47037384-47037403 | Msa0407880:three_prime_UTR | 20.0% |
| !! | ACTCTATTTGTATCATTATA+AGG | + | chr3_2:47037427-47037446 | Msa0407880:three_prime_UTR | 20.0% |
| ! | TTTCTGCAGTATATATTGAT+AGG | - | chr3_2:47033675-47033694 | None:intergenic | 25.0% |
| ! | TCAATATATACTGCAGAAAA+AGG | + | chr3_2:47033676-47033695 | Msa0407880:five_prime_UTR | 25.0% |
| !!! | TTTTCTTGGTGATGAAAATA+GGG | - | chr3_2:47033839-47033858 | None:intergenic | 25.0% |
| !!! | TTTTTCTTGGTGATGAAAAT+AGG | - | chr3_2:47033840-47033859 | None:intergenic | 25.0% |
| !! | AATTAATTTTGCAACCTTAG+GGG | + | chr3_2:47034356-47034375 | Msa0407880:intron | 25.0% |
| !!! | GTTTACCTATATGTTTTTAG+CGG | + | chr3_2:47034730-47034749 | Msa0407880:intron | 25.0% |
| !!! | TTTACCTATATGTTTTTAGC+GGG | + | chr3_2:47034731-47034750 | Msa0407880:intron | 25.0% |
| !!! | TTTTTTTAAAAAACACCGAC+GGG | + | chr3_2:47035198-47035217 | Msa0407880:intron | 25.0% |
| ! | GTCAATAATCTGTCTAAATA+GGG | - | chr3_2:47035313-47035332 | None:intergenic | 25.0% |
| ! | CTATTTAGACAGATTATTGA+CGG | + | chr3_2:47035312-47035331 | Msa0407880:intron | 25.0% |
| ! | TATTTAGACAGATTATTGAC+GGG | + | chr3_2:47035313-47035332 | Msa0407880:intron | 25.0% |
| !!! | CATTTTAAGGATGGTAAAAA+GGG | - | chr3_2:47035363-47035382 | None:intergenic | 25.0% |
| !!! | TCATTTTAAGGATGGTAAAA+AGG | - | chr3_2:47035364-47035383 | None:intergenic | 25.0% |
| !!! | AAGAATACTCATTTTAAGGA+TGG | - | chr3_2:47035372-47035391 | None:intergenic | 25.0% |
| !!! | ATAAAAAAGTGTCATAGCTA+AGG | - | chr3_2:47035557-47035576 | None:intergenic | 25.0% |
| ! | AGAGCTTAATTCAAAAGTAA+AGG | + | chr3_2:47035881-47035900 | Msa0407880:CDS | 25.0% |
| ! | TTTATTACTTGTAGCAATGA+AGG | + | chr3_2:47035920-47035939 | Msa0407880:CDS | 25.0% |
| !!! | CATATGATATTTTTAAGGCA+AGG | + | chr3_2:47036349-47036368 | Msa0407880:intron | 25.0% |
| !!! | TTAATCAGAGCTTAGTTTTA+TGG | - | chr3_2:47036453-47036472 | None:intergenic | 25.0% |
| ! | TCGGAATACAAAAAACTAAA+TGG | - | chr3_2:47036510-47036529 | None:intergenic | 25.0% |
| !!! | CTGTTTTAACTATATGTGAA+TGG | + | chr3_2:47036622-47036641 | Msa0407880:intron | 25.0% |
| ! | TTGAGAAGATCAAGATATAA+CGG | - | chr3_2:47037198-47037217 | None:intergenic | 25.0% |
| !! | TTTTTCTTTGACTCATAGTT+TGG | + | chr3_2:47037328-47037347 | Msa0407880:three_prime_UTR | 25.0% |
| TTAGTGATGATACTTCAATG+TGG | + | chr3_2:47033633-47033652 | Msa0407880:five_prime_UTR | 30.0% | |
| ! | GTTGATGAATTAAAAAAGGC+AGG | + | chr3_2:47033724-47033743 | Msa0407880:five_prime_UTR | 30.0% |
| TTTCATCACCAAGAAAAAGA+TGG | + | chr3_2:47033842-47033861 | Msa0407880:CDS | 30.0% | |
| ! | GTTAAGAAGAAGCACATATT+CGG | + | chr3_2:47034390-47034409 | Msa0407880:CDS | 30.0% |
| TTCTTATATATAAGACCGGA+GGG | - | chr3_2:47034609-47034628 | None:intergenic | 30.0% | |
| TTTCTTATATATAAGACCGG+AGG | - | chr3_2:47034610-47034629 | None:intergenic | 30.0% | |
| !!! | TTACCTATATGTTTTTAGCG+GGG | + | chr3_2:47034732-47034751 | Msa0407880:intron | 30.0% |
| CGTCAATAATCTGTCTAAAT+AGG | - | chr3_2:47035314-47035333 | None:intergenic | 30.0% | |
| !!! | GCTATGACACTTTTTTATAG+AGG | + | chr3_2:47035559-47035578 | Msa0407880:intron | 30.0% |
| ATCATAGTTATGTATTGCAG+AGG | + | chr3_2:47035734-47035753 | Msa0407880:intron | 30.0% | |
| AAATCAAAACAAATGGGAGA+AGG | + | chr3_2:47035768-47035787 | Msa0407880:CDS | 30.0% | |
| !! | TTGTTGATTTATGCTCTGAA+AGG | - | chr3_2:47036156-47036175 | None:intergenic | 30.0% |
| ! | AACTAAGCTCTGATTAAAAG+TGG | + | chr3_2:47036456-47036475 | Msa0407880:intron | 30.0% |
| !! | TTCTAGATAAAAGCATTGAG+TGG | + | chr3_2:47036749-47036768 | Msa0407880:CDS | 30.0% |
| ! | TTTGCTGTATCTTCATTAGT+TGG | + | chr3_2:47036910-47036929 | Msa0407880:CDS | 30.0% |
| AGCAATGAAAGAAATGAACA+TGG | - | chr3_2:47037070-47037089 | None:intergenic | 30.0% | |
| ATGTTCATTTCTTTCATTGC+TGG | + | chr3_2:47037069-47037088 | Msa0407880:CDS | 30.0% | |
| ACAGATAAATATTCCAAGAG+TGG | + | chr3_2:47037108-47037127 | Msa0407880:CDS | 30.0% | |
| TTGATCTTCTCAAAGTTACA+TGG | + | chr3_2:47037205-47037224 | Msa0407880:CDS | 30.0% | |
| TGAAAATAGGGTATGCCATA+TGG | - | chr3_2:47033827-47033846 | None:intergenic | 35.0% | |
| ! | TGAGTAGACCATCTTTTTCT+TGG | - | chr3_2:47033853-47033872 | None:intergenic | 35.0% |
| TGTTCAATATACATACCCCA+CGG | - | chr3_2:47033880-47033899 | None:intergenic | 35.0% | |
| GATGTAGTATATAGAAGCTG+AGG | - | chr3_2:47034240-47034259 | None:intergenic | 35.0% | |
| TGCACAAAGCAAAAAAGCAA+TGG | - | chr3_2:47034310-47034329 | None:intergenic | 35.0% | |
| ! | ATTATCTGGGACGACAAAAT+CGG | + | chr3_2:47034685-47034704 | Msa0407880:intron | 35.0% |
| ! | TGAAATTTTGAACCCATTGC+TGG | + | chr3_2:47034760-47034779 | Msa0407880:intron | 35.0% |
| !!! | TCATTTCCCTACTTTTTAGC+GGG | - | chr3_2:47034807-47034826 | None:intergenic | 35.0% |
| !!! | CTCATTTCCCTACTTTTTAG+CGG | - | chr3_2:47034808-47034827 | None:intergenic | 35.0% |
| GCTAAAAAGTAGGGAAATGA+GGG | + | chr3_2:47034807-47034826 | Msa0407880:intron | 35.0% | |
| CTAAAAAGTAGGGAAATGAG+GGG | + | chr3_2:47034808-47034827 | Msa0407880:intron | 35.0% | |
| TAAAAAGTAGGGAAATGAGG+GGG | + | chr3_2:47034809-47034828 | Msa0407880:intron | 35.0% | |
| GGGAGAAGGAAATCAAAAAA+TGG | + | chr3_2:47035782-47035801 | Msa0407880:CDS | 35.0% | |
| !!! | TTTTTGGCTGTAGCAAAAAG+TGG | + | chr3_2:47035840-47035859 | Msa0407880:CDS | 35.0% |
| AAGTGGCGTAGTTGAAATTA+TGG | + | chr3_2:47035857-47035876 | Msa0407880:CDS | 35.0% | |
| GAATTACCAGCAAAGAAAAG+TGG | + | chr3_2:47035942-47035961 | Msa0407880:CDS | 35.0% | |
| ! | CATTGTCAGAGTTAGTTTCA+TGG | - | chr3_2:47036055-47036074 | None:intergenic | 35.0% |
| ! | TGTTGCTTCTATGATGGTAA+TGG | - | chr3_2:47036681-47036700 | None:intergenic | 35.0% |
| ! | CTTCTTTGTTGCTTCTATGA+TGG | - | chr3_2:47036687-47036706 | None:intergenic | 35.0% |
| CATCATAGAAGCAACAAAGA+AGG | + | chr3_2:47036685-47036704 | Msa0407880:CDS | 35.0% | |
| TCCTTTCTATACTCACTTCT+CGG | + | chr3_2:47036965-47036984 | Msa0407880:CDS | 35.0% | |
| ! | TTGCCAATGAAGCTTCTTTT+TGG | + | chr3_2:47037015-47037034 | Msa0407880:CDS | 35.0% |
| AAGCCAAAAAGAAGCTTCAT+TGG | - | chr3_2:47037021-47037040 | None:intergenic | 35.0% | |
| AGAAATGAACATGGCAACAA+TGG | - | chr3_2:47037061-47037080 | None:intergenic | 35.0% | |
| ATAGAACAAGATACCACTCT+TGG | - | chr3_2:47037124-47037143 | None:intergenic | 35.0% | |
| ! | GATCAAGATATAACGGAAAC+TGG | - | chr3_2:47037191-47037210 | None:intergenic | 35.0% |
| ATCTTCTCAAAGTTACATGG+AGG | + | chr3_2:47037208-47037227 | Msa0407880:CDS | 35.0% | |
| TGGATTGAAACTCATGAGTT+TGG | + | chr3_2:47037297-47037316 | Msa0407880:three_prime_UTR | 35.0% | |
| TGTCAATTGAGCTATGCTCA+TGG | + | chr3_2:47034265-47034284 | Msa0407880:intron | 40.0% | |
| GTCAATTGAGCTATGCTCAT+GGG | + | chr3_2:47034266-47034285 | Msa0407880:intron | 40.0% | |
| TCATAAATGCTTCCAAGAGC+TGG | - | chr3_2:47034419-47034438 | None:intergenic | 40.0% | |
| CCACACATGTATGACTCATA+AGG | - | chr3_2:47034447-47034466 | None:intergenic | 40.0% | |
| CCTTATGAGTCATACATGTG+TGG | + | chr3_2:47034444-47034463 | Msa0407880:CDS | 40.0% | |
| TATGAGTCATACATGTGTGG+TGG | + | chr3_2:47034447-47034466 | Msa0407880:CDS | 40.0% | |
| ATGAGTCATACATGTGTGGT+GGG | + | chr3_2:47034448-47034467 | Msa0407880:CDS | 40.0% | |
| TCATGTTCTCCGTAATCCAA+GGG | - | chr3_2:47034480-47034499 | None:intergenic | 40.0% | |
| !! | TTGAAAGTGTCATGCACGAA+AGG | + | chr3_2:47034529-47034548 | Msa0407880:CDS | 40.0% |
| GACTTAATAACTACTCCCTC+CGG | + | chr3_2:47034591-47034610 | Msa0407880:intron | 40.0% | |
| !!! | CTATATGTTTTTAGCGGGGT+GGG | + | chr3_2:47034736-47034755 | Msa0407880:intron | 40.0% |
| ! | TTTTGAACCCATTGCTGGTA+AGG | + | chr3_2:47034765-47034784 | Msa0407880:intron | 40.0% |
| CGCTAAAAAGTAGGGAAATG+AGG | + | chr3_2:47034806-47034825 | Msa0407880:intron | 40.0% | |
| TTTATGGCAGACCGACAAAT+TGG | - | chr3_2:47035232-47035251 | None:intergenic | 40.0% | |
| ! | TCTCACCTTGTCTCGTTTTA+TGG | - | chr3_2:47035248-47035267 | None:intergenic | 40.0% |
| GTCAACTAGATATGTAGGGT+TGG | - | chr3_2:47035274-47035293 | None:intergenic | 40.0% | |
| ! | CGGTGTCAACTAGATATGTA+GGG | - | chr3_2:47035278-47035297 | None:intergenic | 40.0% |
| !! | GTAAAGGCATCTGACAAGAA+AGG | + | chr3_2:47035897-47035916 | Msa0407880:CDS | 40.0% |
| !!! | TTTGTGCCACTTTTCTTTGC+TGG | - | chr3_2:47035951-47035970 | None:intergenic | 40.0% |
| TATTTGCGTGCAGCAAAACA+TGG | + | chr3_2:47035981-47036000 | Msa0407880:CDS | 40.0% | |
| TTCAAGTGCACGCATGATTT+CGG | - | chr3_2:47036012-47036031 | None:intergenic | 40.0% | |
| CACACAACGAAAAAACTGCT+TGG | + | chr3_2:47036225-47036244 | Msa0407880:CDS | 40.0% | |
| ACAACGAAAAAACTGCTTGG+AGG | + | chr3_2:47036228-47036247 | Msa0407880:CDS | 40.0% | |
| AAAACTGCTTGGAGGATATC+TGG | + | chr3_2:47036236-47036255 | Msa0407880:CDS | 40.0% | |
| AAATGATGTGGGACATCAAG+TGG | + | chr3_2:47036270-47036289 | Msa0407880:CDS | 40.0% | |
| !! | CTTCTATGATGGTAATGGTC+TGG | - | chr3_2:47036676-47036695 | None:intergenic | 40.0% |
| AACAAAGAAGGAAAAACCCC+AGG | + | chr3_2:47036697-47036716 | Msa0407880:CDS | 40.0% | |
| AACCCCAGGTGAAATCTTTA+AGG | + | chr3_2:47036711-47036730 | Msa0407880:CDS | 40.0% | |
| CTCCTTAAAGATTTCACCTG+GGG | - | chr3_2:47036716-47036735 | None:intergenic | 40.0% | |
| CCTCCTTAAAGATTTCACCT+GGG | - | chr3_2:47036717-47036736 | None:intergenic | 40.0% | |
| TCCTCCTTAAAGATTTCACC+TGG | - | chr3_2:47036718-47036737 | None:intergenic | 40.0% | |
| ACAGGGAAACCAACATTTGA+AGG | + | chr3_2:47036868-47036887 | Msa0407880:CDS | 40.0% | |
| CAGGGAAACCAACATTTGAA+GGG | + | chr3_2:47036869-47036888 | Msa0407880:CDS | 40.0% | |
| ACAGCAAATCCTTCAAATGC+TGG | - | chr3_2:47036898-47036917 | None:intergenic | 40.0% | |
| TCCGAGAAGTGAGTATAGAA+AGG | - | chr3_2:47036969-47036988 | None:intergenic | 40.0% | |
| ACAACTCCATAGAATGTGAG+AGG | - | chr3_2:47037168-47037187 | None:intergenic | 40.0% | |
| TCTCAAAGTTACATGGAGGA+AGG | + | chr3_2:47037212-47037231 | Msa0407880:CDS | 40.0% | |
| TTAACACCCTTGATACTTGG+TGG | - | chr3_2:47037243-47037262 | None:intergenic | 40.0% | |
| AGCTTAACACCCTTGATACT+TGG | - | chr3_2:47037246-47037265 | None:intergenic | 40.0% | |
| ! | CCTACCACTGTGTTACTCAA+GGG | + | chr3_2:47033934-47033953 | Msa0407880:intron | 45.0% |
| ATCTCCCTTGAGTAACACAG+TGG | - | chr3_2:47033941-47033960 | None:intergenic | 45.0% | |
| GTTGTTGTCATGCACTCAGT+TGG | + | chr3_2:47034165-47034184 | Msa0407880:intron | 45.0% | |
| AACCTTAGGGGCAATGAAGA+TGG | + | chr3_2:47034368-47034387 | Msa0407880:intron | 45.0% | |
| AACCATCTTCATTGCCCCTA+AGG | - | chr3_2:47034373-47034392 | None:intergenic | 45.0% | |
| TGAGTCATACATGTGTGGTG+GGG | + | chr3_2:47034449-47034468 | Msa0407880:CDS | 45.0% | |
| GTCATGTTCTCCGTAATCCA+AGG | - | chr3_2:47034481-47034500 | None:intergenic | 45.0% | |
| AGTGTCATGCACGAAAGGAA+AGG | + | chr3_2:47034534-47034553 | Msa0407880:CDS | 45.0% | |
| CCACCCCGCTAAAAACATAT+AGG | - | chr3_2:47034738-47034757 | None:intergenic | 45.0% | |
| !!! | CCTATATGTTTTTAGCGGGG+TGG | + | chr3_2:47034735-47034754 | Msa0407880:intron | 45.0% |
| !!! | TTTTAGCGGGTTAGGCGTAT+CGG | - | chr3_2:47034794-47034813 | None:intergenic | 45.0% |
| GCCTAACCCGCTAAAAAGTA+GGG | + | chr3_2:47034798-47034817 | Msa0407880:intron | 45.0% | |
| !!! | TCCCTACTTTTTAGCGGGTT+AGG | - | chr3_2:47034802-47034821 | None:intergenic | 45.0% |
| GTCTGCCATAAAACGAGACA+AGG | + | chr3_2:47035240-47035259 | Msa0407880:intron | 45.0% | |
| ! | GCGGTGTCAACTAGATATGT+AGG | - | chr3_2:47035279-47035298 | None:intergenic | 45.0% |
| TCTAAATAGGGCGCATAGTG+GGG | - | chr3_2:47035301-47035320 | None:intergenic | 45.0% | |
| GTCTAAATAGGGCGCATAGT+GGG | - | chr3_2:47035302-47035321 | None:intergenic | 45.0% | |
| TGTCTAAATAGGGCGCATAG+TGG | - | chr3_2:47035303-47035322 | None:intergenic | 45.0% | |
| TAGACAACCGCAAGTTGTTG+AGG | + | chr3_2:47036103-47036122 | Msa0407880:CDS | 45.0% | |
| AGACAACCGCAAGTTGTTGA+GGG | + | chr3_2:47036104-47036123 | Msa0407880:CDS | 45.0% | |
| GTTGTGGAAGAGGCTTTCTA+TGG | + | chr3_2:47036127-47036146 | Msa0407880:CDS | 45.0% | |
| GATGTCCCACATCATTTGCA+TGG | - | chr3_2:47036267-47036286 | None:intergenic | 45.0% | |
| ! | CCCAGGTGAAATCTTTAAGG+AGG | + | chr3_2:47036714-47036733 | Msa0407880:CDS | 45.0% |
| GAATGTGAGAGGCAAGCAAA+TGG | - | chr3_2:47037157-47037176 | None:intergenic | 45.0% | |
| TGCTTGCCTCTCACATTCTA+TGG | + | chr3_2:47037159-47037178 | Msa0407880:CDS | 45.0% | |
| !! | TCAAGGGTGTTAAGCTGTAG+AGG | + | chr3_2:47037250-47037269 | Msa0407880:CDS | 45.0% |
| !! | GTATAAATATATAAATTTAT+AGG | - | chr3_2:47035150-47035169 | None:intergenic | 5.0% |
| !!! | AAAAAATAAAAATGTTTTTT+CGG | - | chr3_2:47036529-47036548 | None:intergenic | 5.0% |
| ATGGTCTACTCAGTCACCGT+GGG | + | chr3_2:47033861-47033880 | Msa0407880:CDS | 50.0% | |
| ! | GCCTACCACTGTGTTACTCA+AGG | + | chr3_2:47033933-47033952 | Msa0407880:intron | 50.0% |
| CCCTTGAGTAACACAGTGGT+AGG | - | chr3_2:47033937-47033956 | None:intergenic | 50.0% | |
| CATATTCGGTAGCCAGCTCT+TGG | + | chr3_2:47034404-47034423 | Msa0407880:CDS | 50.0% | |
| ! | TCTGGGACGACAAAATCGGT+TGG | + | chr3_2:47034689-47034708 | Msa0407880:intron | 50.0% |
| CAAAATCGGTTGGATCCGTC+AGG | + | chr3_2:47034699-47034718 | Msa0407880:intron | 50.0% | |
| GGTAAACGAGTCCAACCTGA+CGG | - | chr3_2:47034717-47034736 | None:intergenic | 50.0% | |
| TCGGACACCTTACCAGCAAT+GGG | - | chr3_2:47034775-47034794 | None:intergenic | 50.0% | |
| ATCGGACACCTTACCAGCAA+TGG | - | chr3_2:47034776-47034795 | None:intergenic | 50.0% | |
| CGCCTAACCCGCTAAAAAGT+AGG | + | chr3_2:47034797-47034816 | Msa0407880:intron | 50.0% | |
| AAAGTAGGGAAATGAGGGGG+CGG | + | chr3_2:47034812-47034831 | Msa0407880:intron | 50.0% | |
| TCCTCCGTATAGTGTGTGTG+TGG | + | chr3_2:47034925-47034944 | Msa0407880:intron | 50.0% | |
| CCTCCGTATAGTGTGTGTGT+GGG | + | chr3_2:47034926-47034945 | Msa0407880:intron | 50.0% | |
| CTCCGTATAGTGTGTGTGTG+GGG | + | chr3_2:47034927-47034946 | Msa0407880:intron | 50.0% | |
| TCCGTATAGTGTGTGTGTGG+GGG | + | chr3_2:47034928-47034947 | Msa0407880:intron | 50.0% | |
| !! | AAATTGGCGGGTTAACCCGT+CGG | - | chr3_2:47035216-47035235 | None:intergenic | 50.0% |
| GGGTTAACCCGCCAATTTGT+CGG | + | chr3_2:47035218-47035237 | Msa0407880:intron | 50.0% | |
| ATGGCAGACCGACAAATTGG+CGG | - | chr3_2:47035229-47035248 | None:intergenic | 50.0% | |
| GATTATTGACGGGACGAGAC+CGG | + | chr3_2:47035323-47035342 | Msa0407880:intron | 50.0% | |
| ATTATTGACGGGACGAGACC+GGG | + | chr3_2:47035324-47035343 | Msa0407880:intron | 50.0% | |
| GACAACCGCAAGTTGTTGAG+GGG | + | chr3_2:47036105-47036124 | Msa0407880:CDS | 50.0% | |
| CACAACCCCTCAACAACTTG+CGG | - | chr3_2:47036113-47036132 | None:intergenic | 50.0% | |
| TTGTTGAGGGGTTGTGGAAG+AGG | + | chr3_2:47036117-47036136 | Msa0407880:CDS | 50.0% | |
| TGCTTGGAGGATATCTGGTG+CGG | + | chr3_2:47036241-47036260 | Msa0407880:CDS | 50.0% | |
| TGCGGCCATGCAAATGATGT+GGG | + | chr3_2:47036259-47036278 | Msa0407880:CDS | 50.0% | |
| GTGGGACATCAAGTGGTACA+AGG | + | chr3_2:47036277-47036296 | Msa0407880:CDS | 50.0% | |
| GACGTTGCCTGATGTAGCAA+AGG | - | chr3_2:47036830-47036849 | None:intergenic | 50.0% | |
| CTGTTTCCTGATTGCCTCCA+GGG | - | chr3_2:47036852-47036871 | None:intergenic | 50.0% | |
| CTGGAGGCAATCAGGAAACA+GGG | + | chr3_2:47036851-47036870 | Msa0407880:CDS | 50.0% | |
| GCTGGTTGCCCTTCAAATGT+TGG | - | chr3_2:47036880-47036899 | None:intergenic | 50.0% | |
| GAAGGGCAACCAGCATTTGA+AGG | + | chr3_2:47036886-47036905 | Msa0407880:CDS | 50.0% | |
| GTGCCACCACCAAGTATCAA+GGG | + | chr3_2:47037234-47037253 | Msa0407880:CDS | 50.0% | |
| ! | ACACCCTTGATACTTGGTGG+TGG | - | chr3_2:47037240-47037259 | None:intergenic | 50.0% |
| GATGGTCTACTCAGTCACCG+TGG | + | chr3_2:47033860-47033879 | Msa0407880:CDS | 55.0% | |
| TGGTCTACTCAGTCACCGTG+GGG | + | chr3_2:47033862-47033881 | Msa0407880:CDS | 55.0% | |
| GGGGCTCATCCCTTGGATTA+CGG | + | chr3_2:47034468-47034487 | Msa0407880:CDS | 55.0% | |
| ATCGGTTGGATCCGTCAGGT+TGG | + | chr3_2:47034703-47034722 | Msa0407880:intron | 55.0% | |
| AAGTAGGGAAATGAGGGGGC+GGG | + | chr3_2:47034813-47034832 | Msa0407880:intron | 55.0% | |
| CCCACACACACACTATACGG+AGG | - | chr3_2:47034929-47034948 | None:intergenic | 55.0% | |
| CCCCCCACACACACACTATA+CGG | - | chr3_2:47034932-47034951 | None:intergenic | 55.0% | |
| CCGTATAGTGTGTGTGTGGG+GGG | + | chr3_2:47034929-47034948 | Msa0407880:intron | 55.0% | |
| CGTATAGTGTGTGTGTGGGG+GGG | + | chr3_2:47034930-47034949 | Msa0407880:intron | 55.0% | |
| GTATAGTGTGTGTGTGGGGG+GGG | + | chr3_2:47034931-47034950 | Msa0407880:intron | 55.0% | |
| TGGCAGACCGACAAATTGGC+GGG | - | chr3_2:47035228-47035247 | None:intergenic | 55.0% | |
| ! | AAATAGGGCGCATAGTGGGG+CGG | - | chr3_2:47035298-47035317 | None:intergenic | 55.0% |
| CGCAAGTTGTTGAGGGGTTG+TGG | + | chr3_2:47036111-47036130 | Msa0407880:CDS | 55.0% | |
| GTGCGGCCATGCAAATGATG+TGG | + | chr3_2:47036258-47036277 | Msa0407880:CDS | 55.0% | |
| GGCGTCTCCTTTGCTACATC+AGG | + | chr3_2:47036820-47036839 | Msa0407880:CDS | 55.0% | |
| CCTGTTTCCTGATTGCCTCC+AGG | - | chr3_2:47036853-47036872 | None:intergenic | 55.0% | |
| CCTGGAGGCAATCAGGAAAC+AGG | + | chr3_2:47036850-47036869 | Msa0407880:CDS | 55.0% | |
| ! | GGTGCCACCACCAAGTATCA+AGG | + | chr3_2:47037233-47037252 | Msa0407880:CDS | 55.0% |
| GTTGTAGCAGCACTCGTCGC+AGG | + | chr3_2:47036799-47036818 | Msa0407880:CDS | 60.0% | |
| GCTACATCAGGCAACGTCCC+TGG | + | chr3_2:47036832-47036851 | Msa0407880:CDS | 60.0% | |
| ACATCAGGCAACGTCCCTGG+AGG | + | chr3_2:47036835-47036854 | Msa0407880:CDS | 60.0% | |
| CAACGTCCCTGGAGGCAATC+AGG | + | chr3_2:47036843-47036862 | Msa0407880:CDS | 60.0% | |
| ! | GTGTGGTGGGGCTCATCCCT+TGG | + | chr3_2:47034461-47034480 | Msa0407880:CDS | 65.0% |
| TAGGGAAATGAGGGGGCGGG+AGG | + | chr3_2:47034816-47034835 | Msa0407880:intron | 65.0% | |
| AGGGAAATGAGGGGGCGGGA+GGG | + | chr3_2:47034817-47034836 | Msa0407880:intron | 65.0% | |
| TAGTGTGTGTGTGGGGGGGG+TGG | + | chr3_2:47034934-47034953 | Msa0407880:intron | 65.0% | |
| AGTGTGTGTGTGGGGGGGGT+GGG | + | chr3_2:47034935-47034954 | Msa0407880:intron | 65.0% | |
| ATTGACGGGACGAGACCGGG+CGG | + | chr3_2:47035327-47035346 | Msa0407880:intron | 65.0% | |
| AAGGGTCAATCCGCTCCGCC+CGG | - | chr3_2:47035345-47035364 | None:intergenic | 65.0% | |
| GGCGGGAGGGTTGACCCGTT+AGG | + | chr3_2:47034830-47034849 | Msa0407880:intron | 70.0% | |
| ! | CGGGACGAGACCGGGCGGAG+CGG | + | chr3_2:47035332-47035351 | Msa0407880:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 47033572 | 47037475 | 47033572 | ID=Msa0407880;Name=Msa0407880 |
| chr3_2 | mRNA | 47033572 | 47037475 | 47033572 | ID=Msa0407880-mRNA-1;Parent=Msa0407880;Name=Msa0407880-mRNA-1;_AED=0.01;_eAED=0.01;_QI=239|1|0.75|1|0.66|0.5|4|206|470 |
| chr3_2 | exon | 47033572 | 47033883 | 47033572 | ID=Msa0407880-mRNA-1:exon:9039;Parent=Msa0407880-mRNA-1 |
| chr3_2 | exon | 47034376 | 47034555 | 47034376 | ID=Msa0407880-mRNA-1:exon:9040;Parent=Msa0407880-mRNA-1 |
| chr3_2 | exon | 47035754 | 47036298 | 47035754 | ID=Msa0407880-mRNA-1:exon:9041;Parent=Msa0407880-mRNA-1 |
| chr3_2 | exon | 47036655 | 47037475 | 47036655 | ID=Msa0407880-mRNA-1:exon:9042;Parent=Msa0407880-mRNA-1 |
| chr3_2 | five_prime_UTR | 47033572 | 47033810 | 47033572 | ID=Msa0407880-mRNA-1:five_prime_utr;Parent=Msa0407880-mRNA-1 |
| chr3_2 | CDS | 47033811 | 47033883 | 47033811 | ID=Msa0407880-mRNA-1:cds;Parent=Msa0407880-mRNA-1 |
| chr3_2 | CDS | 47034376 | 47034555 | 47034376 | ID=Msa0407880-mRNA-1:cds;Parent=Msa0407880-mRNA-1 |
| chr3_2 | CDS | 47035754 | 47036298 | 47035754 | ID=Msa0407880-mRNA-1:cds;Parent=Msa0407880-mRNA-1 |
| chr3_2 | CDS | 47036655 | 47037269 | 47036655 | ID=Msa0407880-mRNA-1:cds;Parent=Msa0407880-mRNA-1 |
| chr3_2 | three_prime_UTR | 47037270 | 47037475 | 47037270 | ID=Msa0407880-mRNA-1:three_prime_utr;Parent=Msa0407880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
