Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0407900 | XP_024634879.1 | 85.022 | 454 | 58 | 2 | 1 | 452 | 335 | 780 | 0.0 | 793 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0407900 | A0A396IRE0 | 92.174 | 345 | 27 | 0 | 108 | 452 | 1 | 345 | 0.0 | 665 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0407900 | 0.842343 | 2.740869e-58 | -8.615850e-47 |
| Msa0029910 | Msa0407900 | 0.800598 | 1.337179e-48 | -8.615850e-47 |
| Msa0101810 | Msa0407900 | -0.833138 | 6.335076e-56 | -8.615850e-47 |
| Msa0110970 | Msa0407900 | 0.814046 | 1.880859e-51 | -8.615850e-47 |
| Msa0112750 | Msa0407900 | 0.802771 | 4.790190e-49 | -8.615850e-47 |
| Msa0125090 | Msa0407900 | 0.808264 | 3.373425e-50 | -8.615850e-47 |
| Msa0142200 | Msa0407900 | 0.827272 | 1.714508e-54 | -8.615850e-47 |
| Msa0157290 | Msa0407900 | 0.842934 | 1.909690e-58 | -8.615850e-47 |
| Msa0169860 | Msa0407900 | 0.800472 | 1.418167e-48 | -8.615850e-47 |
| Msa0169920 | Msa0407900 | 0.808241 | 3.412184e-50 | -8.615850e-47 |
| Msa0191250 | Msa0407900 | 0.802757 | 4.821895e-49 | -8.615850e-47 |
| Msa0197930 | Msa0407900 | 0.817632 | 2.982424e-52 | -8.615850e-47 |
| Msa0227470 | Msa0407900 | 0.840804 | 6.971858e-58 | -8.615850e-47 |
| Msa0387510 | Msa0407900 | 0.807146 | 5.829540e-50 | -8.615850e-47 |
| Msa0392420 | Msa0407900 | 0.800804 | 1.213790e-48 | -8.615850e-47 |
| Msa0407780 | Msa0407900 | 0.805337 | 1.401607e-49 | -8.615850e-47 |
| Msa0407880 | Msa0407900 | 0.988934 | 5.251956e-176 | -8.615850e-47 |
| Msa0407900 | Msa0407910 | 0.947585 | 5.055089e-106 | -8.615850e-47 |
| Msa0407900 | Msa0407920 | 0.953073 | 6.106432e-111 | -8.615850e-47 |
| Msa0407900 | Msa0450440 | 0.803001 | 4.292153e-49 | -8.615850e-47 |
| Msa0407900 | Msa0452920 | 0.832963 | 7.003195e-56 | -8.615850e-47 |
| Msa0407900 | Msa0484780 | 0.802689 | 4.979408e-49 | -8.615850e-47 |
| Msa0407900 | Msa0487630 | 0.803802 | 2.929532e-49 | -8.615850e-47 |
| Msa0407900 | Msa0494670 | 0.804588 | 2.010359e-49 | -8.615850e-47 |
| Msa0407900 | Msa0509610 | 0.806374 | 8.486957e-50 | -8.615850e-47 |
| Msa0407900 | Msa0510980 | 0.806348 | 8.593121e-50 | -8.615850e-47 |
| Msa0407900 | Msa0523460 | 0.805993 | 1.020742e-49 | -8.615850e-47 |
| Msa0407900 | Msa0647130 | 0.811333 | 7.376407e-51 | -8.615850e-47 |
| Msa0407900 | Msa0657970 | 0.812315 | 4.510468e-51 | -8.615850e-47 |
| Msa0407900 | Msa0853660 | 0.800726 | 1.258873e-48 | -8.615850e-47 |
| Msa0407900 | Msa0858840 | 0.807664 | 4.526387e-50 | -8.615850e-47 |
| Msa0407900 | Msa0867890 | 0.805976 | 1.029301e-49 | -8.615850e-47 |
| Msa0407900 | Msa0870530 | 0.802118 | 6.529441e-49 | -8.615850e-47 |
| Msa0407900 | Msa0880140 | 0.843969 | 1.010043e-58 | -8.615850e-47 |
| Msa0407900 | Msa0908050 | 0.814897 | 1.219032e-51 | -8.615850e-47 |
| Msa0407900 | Msa0973250 | 0.801363 | 9.329417e-49 | -8.615850e-47 |
| Msa0407900 | Msa1044420 | 0.807302 | 5.401862e-50 | -8.615850e-47 |
| Msa0407900 | Msa1082500 | 0.808485 | 3.025670e-50 | -8.615850e-47 |
| Msa0407900 | Msa1098560 | 0.814114 | 1.816316e-51 | -8.615850e-47 |
| Msa0407900 | Msa1179460 | 0.823100 | 1.661304e-53 | -8.615850e-47 |
| Msa0407900 | Msa1242230 | 0.806824 | 6.819151e-50 | -8.615850e-47 |
| Msa0407900 | Msa1289280 | 0.807580 | 4.715044e-50 | -8.615850e-47 |
| Msa0407900 | Msa1293770 | 0.804006 | 2.656703e-49 | -8.615850e-47 |
| Msa0407900 | Msa1300490 | 0.800080 | 1.704330e-48 | -8.615850e-47 |
| Msa0407900 | Msa1322860 | 0.809175 | 2.154260e-50 | -8.615850e-47 |
| Msa0407900 | Msa1327050 | 0.807685 | 4.480570e-50 | -8.615850e-47 |
| Msa0407900 | Msa1374550 | 0.808338 | 3.252232e-50 | -8.615850e-47 |
| Msa0407900 | Msa1430240 | 0.801910 | 7.203186e-49 | -8.615850e-47 |
| Msa0407900 | Msa1438250 | 0.822364 | 2.464785e-53 | -8.615850e-47 |
| Msa0243100 | Msa0407900 | 0.813401 | 2.607985e-51 | -8.615850e-47 |
| Msa0287650 | Msa0407900 | 0.815352 | 9.659784e-52 | -8.615850e-47 |
| Msa0362680 | Msa0407900 | 0.816353 | 5.778251e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0407900 | MtrunA17_Chr3g0098481 | 92.174 | 345 | 27 | 0 | 108 | 452 | 1 | 345 | 0.0 | 665 |
| Msa0407900 | MtrunA17_Chr3g0098301 | 65.268 | 429 | 124 | 5 | 19 | 445 | 1 | 406 | 0.0 | 541 |
| Msa0407900 | MtrunA17_Chr3g0098531 | 69.799 | 298 | 89 | 1 | 155 | 452 | 1 | 297 | 2.04e-158 | 449 |
| Msa0407900 | MtrunA17_Chr3g0102001 | 55.732 | 314 | 128 | 4 | 141 | 449 | 439 | 746 | 1.17e-105 | 330 |
| Msa0407900 | MtrunA17_Chr5g0439061 | 56.051 | 314 | 132 | 3 | 141 | 452 | 435 | 744 | 6.05e-105 | 328 |
| Msa0407900 | MtrunA17_Chr2g0286601 | 45.752 | 306 | 158 | 4 | 144 | 448 | 391 | 689 | 3.90e-77 | 254 |
| Msa0407900 | MtrunA17_Chr5g0439051 | 60.976 | 205 | 78 | 1 | 248 | 452 | 20 | 222 | 7.15e-77 | 239 |
| Msa0407900 | MtrunA17_Chr2g0286551 | 44.272 | 323 | 164 | 4 | 135 | 448 | 353 | 668 | 3.96e-70 | 234 |
| Msa0407900 | MtrunA17_Chr5g0439081 | 54.592 | 196 | 86 | 2 | 248 | 443 | 16 | 208 | 7.13e-67 | 213 |
| Msa0407900 | MtrunA17_Chr3g0098511 | 84.314 | 102 | 16 | 0 | 351 | 452 | 1 | 102 | 1.41e-58 | 187 |
| Msa0407900 | MtrunA17_Chr2g0286561 | 46.479 | 213 | 109 | 3 | 238 | 448 | 5 | 214 | 1.86e-53 | 178 |
| Msa0407900 | MtrunA17_Chr5g0443001 | 36.913 | 298 | 173 | 8 | 146 | 439 | 316 | 602 | 4.05e-45 | 166 |
| Msa0407900 | MtrunA17_Chr2g0297701 | 33.333 | 291 | 187 | 4 | 146 | 435 | 282 | 566 | 2.17e-44 | 163 |
| Msa0407900 | MtrunA17_Chr5g0410171 | 30.904 | 343 | 223 | 5 | 102 | 438 | 397 | 731 | 1.05e-43 | 163 |
| Msa0407900 | MtrunA17_Chr2g0297491 | 32.353 | 306 | 191 | 5 | 146 | 445 | 91 | 386 | 3.99e-42 | 153 |
| Msa0407900 | MtrunA17_Chr5g0410271 | 29.464 | 336 | 220 | 4 | 104 | 438 | 5 | 324 | 4.96e-41 | 149 |
| Msa0407900 | MtrunA17_Chr5g0410201 | 31.208 | 298 | 199 | 3 | 142 | 438 | 33 | 325 | 1.77e-40 | 147 |
| Msa0407900 | MtrunA17_Chr2g0297681 | 31.126 | 302 | 201 | 5 | 146 | 445 | 402 | 698 | 3.32e-40 | 153 |
| Msa0407900 | MtrunA17_Chr6g0456141 | 32.283 | 254 | 166 | 3 | 142 | 394 | 92 | 340 | 9.73e-40 | 147 |
| Msa0407900 | MtrunA17_Chr5g0410341 | 30.820 | 305 | 191 | 4 | 142 | 438 | 451 | 743 | 1.73e-39 | 151 |
| Msa0407900 | MtrunA17_Chr6g0456101 | 35.039 | 254 | 159 | 3 | 142 | 394 | 449 | 697 | 3.13e-39 | 150 |
| Msa0407900 | MtrunA17_Chr6g0457101 | 31.801 | 261 | 172 | 3 | 140 | 399 | 394 | 649 | 6.35e-39 | 149 |
| Msa0407900 | MtrunA17_Chr3g0100301 | 40.000 | 200 | 113 | 4 | 233 | 429 | 205 | 400 | 9.29e-39 | 145 |
| Msa0407900 | MtrunA17_Chr2g0297691 | 30.921 | 304 | 199 | 6 | 146 | 445 | 404 | 700 | 3.41e-38 | 147 |
| Msa0407900 | MtrunA17_Chr2g0297481 | 32.000 | 300 | 182 | 8 | 146 | 439 | 189 | 472 | 4.50e-38 | 144 |
| Msa0407900 | MtrunA17_Chr5g0410371 | 32.166 | 314 | 197 | 7 | 144 | 452 | 2 | 304 | 1.97e-37 | 138 |
| Msa0407900 | MtrunA17_Chr3g0100741 | 32.248 | 307 | 193 | 8 | 127 | 429 | 292 | 587 | 6.18e-37 | 142 |
| Msa0407900 | MtrunA17_Chr2g0297711 | 31.164 | 292 | 191 | 6 | 149 | 439 | 245 | 527 | 4.12e-36 | 139 |
| Msa0407900 | MtrunA17_Chr2g0297651 | 31.699 | 306 | 187 | 9 | 146 | 442 | 404 | 696 | 9.01e-36 | 140 |
| Msa0407900 | MtrunA17_Chr2g0284501 | 35.075 | 268 | 162 | 6 | 166 | 432 | 392 | 648 | 2.44e-35 | 139 |
| Msa0407900 | MtrunA17_Chr5g0410461 | 29.560 | 318 | 212 | 6 | 135 | 447 | 160 | 470 | 1.13e-34 | 134 |
| Msa0407900 | MtrunA17_Chr5g0410581 | 29.710 | 276 | 190 | 3 | 135 | 409 | 491 | 763 | 5.88e-34 | 135 |
| Msa0407900 | MtrunA17_Chr2g0284541 | 33.333 | 318 | 192 | 6 | 141 | 451 | 351 | 655 | 6.46e-34 | 134 |
| Msa0407900 | MtrunA17_Chr3g0096941 | 31.596 | 307 | 195 | 8 | 127 | 429 | 293 | 588 | 7.94e-32 | 128 |
| Msa0407900 | MtrunA17_Chr5g0410191 | 32.967 | 182 | 118 | 2 | 258 | 438 | 12 | 190 | 3.12e-29 | 113 |
| Msa0407900 | MtrunA17_Chr5g0410541 | 36.806 | 144 | 91 | 0 | 263 | 406 | 38 | 181 | 1.59e-24 | 101 |
| Msa0407900 | MtrunA17_Chr5g0439041 | 45.536 | 112 | 55 | 2 | 141 | 248 | 59 | 168 | 2.63e-22 | 94.7 |
| Msa0407900 | MtrunA17_Chr5g0410451 | 31.928 | 166 | 112 | 1 | 242 | 406 | 35 | 200 | 7.66e-21 | 91.3 |
| Msa0407900 | MtrunA17_Chr5g0410511 | 30.556 | 180 | 124 | 1 | 250 | 428 | 4 | 183 | 1.25e-18 | 84.0 |
| Msa0407900 | MtrunA17_Chr2g0297611 | 36.667 | 90 | 56 | 1 | 253 | 342 | 1 | 89 | 3.26e-16 | 73.9 |
| Msa0407900 | MtrunA17_Chr5g0410181 | 31.579 | 133 | 87 | 2 | 307 | 438 | 2 | 131 | 4.96e-16 | 74.7 |
| Msa0407900 | MtrunA17_Chr1g0211531 | 24.510 | 306 | 206 | 8 | 142 | 435 | 239 | 531 | 9.37e-14 | 73.2 |
| Msa0407900 | MtrunA17_Chr1g0211541 | 24.779 | 226 | 157 | 5 | 135 | 356 | 211 | 427 | 1.88e-12 | 69.3 |
| Msa0407900 | MtrunA17_Chr2g0297521 | 32.143 | 84 | 57 | 0 | 240 | 323 | 1 | 84 | 3.82e-12 | 62.0 |
| Msa0407900 | MtrunA17_Chr1g0211511 | 24.382 | 283 | 195 | 8 | 142 | 417 | 16 | 286 | 5.14e-12 | 67.0 |
| Msa0407900 | MtrunA17_Chr3g0100921 | 30.597 | 134 | 90 | 2 | 297 | 429 | 2 | 133 | 2.81e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0407900 | AT3G18670.1 | 29.670 | 364 | 238 | 8 | 88 | 439 | 227 | 584 | 1.20e-49 | 178 |
| Msa0407900 | AT3G18670.2 | 31.024 | 332 | 217 | 6 | 114 | 439 | 314 | 639 | 3.55e-49 | 178 |
| Msa0407900 | AT5G35810.1 | 31.699 | 306 | 198 | 5 | 137 | 436 | 29 | 329 | 1.31e-43 | 157 |
| Msa0407900 | AT5G04690.1 | 35.745 | 235 | 143 | 4 | 209 | 441 | 386 | 614 | 9.50e-43 | 160 |
| Msa0407900 | AT5G04690.3 | 35.745 | 235 | 143 | 4 | 209 | 441 | 406 | 634 | 9.97e-43 | 160 |
| Msa0407900 | AT5G04690.2 | 35.745 | 235 | 143 | 4 | 209 | 441 | 420 | 648 | 1.19e-42 | 160 |
| Msa0407900 | AT5G04700.1 | 33.651 | 315 | 192 | 8 | 134 | 441 | 354 | 658 | 2.38e-42 | 159 |
| Msa0407900 | AT3G54065.1 | 35.714 | 210 | 126 | 3 | 234 | 436 | 8 | 215 | 4.49e-38 | 139 |
| Msa0407900 | AT5G04730.1 | 30.844 | 308 | 192 | 8 | 142 | 441 | 297 | 591 | 4.23e-36 | 140 |
| Msa0407900 | AT5G04680.2 | 30.938 | 320 | 202 | 7 | 134 | 441 | 218 | 530 | 1.86e-35 | 138 |
| Msa0407900 | AT5G04680.3 | 30.938 | 320 | 202 | 7 | 134 | 441 | 327 | 639 | 2.61e-35 | 139 |
| Msa0407900 | AT5G04680.4 | 30.625 | 320 | 203 | 6 | 134 | 441 | 341 | 653 | 3.09e-35 | 139 |
| Msa0407900 | AT5G04680.1 | 30.938 | 320 | 202 | 7 | 134 | 441 | 370 | 682 | 4.27e-35 | 138 |
Find 91 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCTATTTGTATCATTATA+AGG | 0.224560 | 3_2:+47112307 | Msa0407900:three_prime_UTR |
| TGCTTGCCTCTCACATTCTA+TGG | 0.260173 | 3_2:+47112042 | Msa0407900:CDS |
| AACCCCAGGTGAAATCTTTA+AGG | 0.271604 | 3_2:+47111594 | Msa0407900:CDS |
| ATGTTCATTTCTTTCATTGC+TGG | 0.288747 | 3_2:+47111952 | Msa0407900:CDS |
| AAGTGGCGTAGTTGAAATTA+TGG | 0.312736 | 3_2:+47110740 | Msa0407900:CDS |
| CTTCTTTGTTGCTTCTATGA+TGG | 0.336687 | 3_2:-47111567 | None:intergenic |
| CCTGTTTCCTGATTGCCTCC+AGG | 0.337339 | 3_2:-47111733 | None:intergenic |
| GATCAAGATATAACGGAAAC+TGG | 0.338760 | 3_2:-47112071 | None:intergenic |
| TTCAAGTGCACGCATGATTT+CGG | 0.351916 | 3_2:-47110892 | None:intergenic |
| CATTGTCAGAGTTAGTTTCA+TGG | 0.358694 | 3_2:-47110935 | None:intergenic |
| TTTGCTGTATCTTCATTAGT+TGG | 0.362700 | 3_2:+47111793 | Msa0407900:CDS |
| CCTGGAGGCAATCAGGAAAC+AGG | 0.362749 | 3_2:+47111733 | Msa0407900:CDS |
| TCCTTTCTATACTCACTTCT+CGG | 0.368888 | 3_2:+47111848 | Msa0407900:CDS |
| AAAACTGCTTGGAGGATATC+TGG | 0.377606 | 3_2:+47111119 | Msa0407900:CDS |
| CGCAAGTTGTTGAGGGGTTG+TGG | 0.380881 | 3_2:+47110994 | Msa0407900:CDS |
| AAGAAAGAAATCAAAACAAA+TGG | 0.391933 | 3_2:+47110620 | Msa0407900:CDS |
| TGTTGCTTCTATGATGGTAA+TGG | 0.392154 | 3_2:-47111561 | None:intergenic |
| AGCTTAACACCCTTGATACT+TGG | 0.393569 | 3_2:-47112126 | None:intergenic |
| TTTATTACTTGTAGCAATGA+AGG | 0.395604 | 3_2:+47110803 | Msa0407900:CDS |
| GTTTATTATGTTTAGAGTAC+TGG | 0.399543 | 3_2:+47112264 | Msa0407900:three_prime_UTR |
| CTGTTTCCTGATTGCCTCCA+GGG | 0.400780 | 3_2:-47111732 | None:intergenic |
| TGGATTGAAACTCATGAGTT+TGG | 0.409080 | 3_2:+47112180 | Msa0407900:three_prime_UTR |
| TCCTCCTTAAAGATTTCACC+TGG | 0.410908 | 3_2:-47111598 | None:intergenic |
| GTTGTGGAAGAGGCTTTCTA+TGG | 0.418288 | 3_2:+47111010 | Msa0407900:CDS |
| CAACGTCCCTGGAGGCAATC+AGG | 0.419195 | 3_2:+47111726 | Msa0407900:CDS |
| GGCGTCTCCTTTGCTACATC+AGG | 0.434602 | 3_2:+47111703 | Msa0407900:CDS |
| TTGTTGAGGGGTTGTGGAAG+AGG | 0.439045 | 3_2:+47111000 | Msa0407900:CDS |
| CATATTCGGTAGCCAGCTCT+TGG | 0.441519 | 3_2:+47109263 | Msa0407900:CDS |
| CTTCTATGATGGTAATGGTC+TGG | 0.452731 | 3_2:-47111556 | None:intergenic |
| GGGGCTCATCCCTTGGATTA+CGG | 0.453441 | 3_2:+47109327 | Msa0407900:CDS |
| TCATAAATGCTTCCAAGAGC+TGG | 0.458200 | 3_2:-47109275 | None:intergenic |
| GTTAAGAAGAAGCACATATT+CGG | 0.460043 | 3_2:+47109249 | Msa0407900:CDS |
| ACAGGGAAACCAACATTTGA+AGG | 0.475667 | 3_2:+47111751 | Msa0407900:CDS |
| AACCTTAGGGGCAATGAAGA+TGG | 0.479996 | 3_2:+47109227 | None:intergenic |
| GAAGGGCAACCAGCATTTGA+AGG | 0.483339 | 3_2:+47111769 | Msa0407900:CDS |
| ATAGAACAAGATACCACTCT+TGG | 0.493665 | 3_2:-47112004 | None:intergenic |
| CTCCTTAAAGATTTCACCTG+GGG | 0.497170 | 3_2:-47111596 | None:intergenic |
| GCTACATCAGGCAACGTCCC+TGG | 0.497506 | 3_2:+47111715 | Msa0407900:CDS |
| AGAGCTTAATTCAAAAGTAA+AGG | 0.498132 | 3_2:+47110764 | Msa0407900:CDS |
| GTGTGGTGGGGCTCATCCCT+TGG | 0.500121 | 3_2:+47109320 | Msa0407900:CDS |
| GAATGTGAGAGGCAAGCAAA+TGG | 0.502669 | 3_2:-47112037 | None:intergenic |
| GTTGTAGCAGCACTCGTCGC+AGG | 0.505518 | 3_2:+47111682 | Msa0407900:CDS |
| AGAAAGAAATCAAAACAAAT+GGG | 0.508367 | 3_2:+47110621 | Msa0407900:CDS |
| GGTGCCACCACCAAGTATCA+AGG | 0.511463 | 3_2:+47112116 | Msa0407900:CDS |
| TTGAGAAGATCAAGATATAA+CGG | 0.512499 | 3_2:-47112078 | None:intergenic |
| CCACACATGTATGACTCATA+AGG | 0.512671 | 3_2:-47109303 | None:intergenic |
| TTGATCTTCTCAAAGTTACA+TGG | 0.512948 | 3_2:+47112088 | Msa0407900:CDS |
| AGAAATGAACATGGCAACAA+TGG | 0.515982 | 3_2:-47111941 | None:intergenic |
| ACAGCAAATCCTTCAAATGC+TGG | 0.519658 | 3_2:-47111778 | None:intergenic |
| TTAACACCCTTGATACTTGG+TGG | 0.523933 | 3_2:-47112123 | None:intergenic |
| GCTGGTTGCCCTTCAAATGT+TGG | 0.529783 | 3_2:-47111760 | None:intergenic |
| ATGAGTCATACATGTGTGGT+GGG | 0.531314 | 3_2:+47109307 | Msa0407900:CDS |
| CACAACCCCTCAACAACTTG+CGG | 0.534637 | 3_2:-47110993 | None:intergenic |
| TTGAAAGTGTCATGCACGAA+AGG | 0.536960 | 3_2:+47109388 | Msa0407900:CDS |
| TTGTTGATTTATGCTCTGAA+AGG | 0.537416 | 3_2:-47111036 | None:intergenic |
| GTCATGTTCTCCGTAATCCA+AGG | 0.537829 | 3_2:-47109337 | None:intergenic |
| AGACAACCGCAAGTTGTTGA+GGG | 0.537910 | 3_2:+47110987 | Msa0407900:CDS |
| GTAAAGGCATCTGACAAGAA+AGG | 0.540805 | 3_2:+47110780 | Msa0407900:CDS |
| CATCATAGAAGCAACAAAGA+AGG | 0.547820 | 3_2:+47111568 | Msa0407900:CDS |
| TCCGAGAAGTGAGTATAGAA+AGG | 0.552792 | 3_2:-47111849 | None:intergenic |
| TAGACAACCGCAAGTTGTTG+AGG | 0.558579 | 3_2:+47110986 | Msa0407900:CDS |
| GATGTCCCACATCATTTGCA+TGG | 0.565189 | 3_2:-47111147 | None:intergenic |
| CCTCCTTAAAGATTTCACCT+GGG | 0.568420 | 3_2:-47111597 | None:intergenic |
| TATGAGTCATACATGTGTGG+TGG | 0.583051 | 3_2:+47109306 | Msa0407900:CDS |
| AAATCAAAACAAATGGGAGA+AGG | 0.587759 | 3_2:+47110627 | Msa0407900:CDS |
| TATTTGCGTGCAGCAAAACA+TGG | 0.589012 | 3_2:+47110864 | Msa0407900:CDS |
| GACGTTGCCTGATGTAGCAA+AGG | 0.589787 | 3_2:-47111710 | None:intergenic |
| ACACCCTTGATACTTGGTGG+TGG | 0.591476 | 3_2:-47112120 | None:intergenic |
| GTGGGACATCAAGTGGTACA+AGG | 0.594742 | 3_2:+47111160 | Msa0407900:CDS |
| TCAAGGGTGTTAAGCTGTAG+AGG | 0.595960 | 3_2:+47112133 | Msa0407900:CDS |
| ACAGATAAATATTCCAAGAG+TGG | 0.603652 | 3_2:+47111991 | Msa0407900:CDS |
| CTGGAGGCAATCAGGAAACA+GGG | 0.606342 | 3_2:+47111734 | Msa0407900:CDS |
| GAATTACCAGCAAAGAAAAG+TGG | 0.610189 | 3_2:+47110825 | Msa0407900:CDS |
| CAGGGAAACCAACATTTGAA+GGG | 0.612015 | 3_2:+47111752 | Msa0407900:CDS |
| AGTGTCATGCACGAAAGGAA+AGG | 0.614504 | 3_2:+47109393 | Msa0407900:CDS |
| GTGCGGCCATGCAAATGATG+TGG | 0.618816 | 3_2:+47111141 | Msa0407900:CDS |
| TCTCAAAGTTACATGGAGGA+AGG | 0.625653 | 3_2:+47112095 | Msa0407900:CDS |
| GTGCCACCACCAAGTATCAA+GGG | 0.630567 | 3_2:+47112117 | Msa0407900:CDS |
| TCATGTTCTCCGTAATCCAA+GGG | 0.632076 | 3_2:-47109336 | None:intergenic |
| TTCTAGATAAAAGCATTGAG+TGG | 0.638047 | 3_2:+47111632 | Msa0407900:CDS |
| GACAACCGCAAGTTGTTGAG+GGG | 0.642150 | 3_2:+47110988 | Msa0407900:CDS |
| TGAGTCATACATGTGTGGTG+GGG | 0.648242 | 3_2:+47109308 | Msa0407900:CDS |
| CCCAGGTGAAATCTTTAAGG+AGG | 0.655968 | 3_2:+47111597 | Msa0407900:CDS |
| TGCGGCCATGCAAATGATGT+GGG | 0.663238 | 3_2:+47111142 | Msa0407900:CDS |
| ACAACTCCATAGAATGTGAG+AGG | 0.673388 | 3_2:-47112048 | None:intergenic |
| ATCTTCTCAAAGTTACATGG+AGG | 0.681695 | 3_2:+47112091 | Msa0407900:CDS |
| AAATGATGTGGGACATCAAG+TGG | 0.684085 | 3_2:+47111153 | Msa0407900:CDS |
| TGCTTGGAGGATATCTGGTG+CGG | 0.697268 | 3_2:+47111124 | Msa0407900:CDS |
| AGCAATGAAAGAAATGAACA+TGG | 0.705741 | 3_2:-47111950 | None:intergenic |
| ACATCAGGCAACGTCCCTGG+AGG | 0.708851 | 3_2:+47111718 | Msa0407900:CDS |
| CCTTATGAGTCATACATGTG+TGG | 0.718357 | 3_2:+47109303 | Msa0407900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAGATACATTTAAAAAT+TGG | + | chr3_2:47109499-47109518 | Msa0407900:intron | 10.0% |
| !! | TACATATATTAAATATTATC+TGG | + | chr3_2:47109531-47109550 | Msa0407900:intron | 10.0% |
| !! | ACATATATTAAATATTATCT+GGG | + | chr3_2:47109532-47109551 | Msa0407900:intron | 10.0% |
| !!! | TAAAAATAGAAGTTTTTTAT+TGG | - | chr3_2:47110389-47110408 | None:intergenic | 10.0% |
| !! | GTAAGAACAAAAAAAAAAAT+TGG | + | chr3_2:47109418-47109437 | Msa0407900:intron | 15.0% |
| !!! | TATTTTCTTATATATAAGAC+CGG | - | chr3_2:47109473-47109492 | None:intergenic | 15.0% |
| !!! | TGTTTTTAATATAAACCTAA+CGG | - | chr3_2:47109708-47109727 | None:intergenic | 15.0% |
| !!! | GATTAATTTCATATTTTTAG+TGG | + | chr3_2:47109948-47109967 | Msa0407900:intron | 15.0% |
| !!! | TTTTAAGAATACTCATTTTA+AGG | - | chr3_2:47110235-47110254 | None:intergenic | 15.0% |
| !! | ATTCTTAAAAAAGAAATGAA+CGG | + | chr3_2:47110245-47110264 | Msa0407900:intron | 15.0% |
| !! | TAATTTATCATTTCAACATA+TGG | + | chr3_2:47111291-47111310 | Msa0407900:intron | 15.0% |
| !!! | ATAGATTTTTTTTAAGAAGT+AGG | - | chr3_2:47111464-47111483 | None:intergenic | 15.0% |
| !!! | GTTTACCTATATTTTTTTAG+CGG | + | chr3_2:47109590-47109609 | Msa0407900:intron | 20.0% |
| !!! | TTTACCTATATTTTTTTAGC+GGG | + | chr3_2:47109591-47109610 | Msa0407900:intron | 20.0% |
| !!! | GTTTTTAATATAAACCTAAC+GGG | - | chr3_2:47109707-47109726 | None:intergenic | 20.0% |
| !!! | TTTTTTTTAAAAAACACCGA+CGG | + | chr3_2:47110056-47110075 | Msa0407900:intron | 20.0% |
| !! | AAGAAAGAAATCAAAACAAA+TGG | + | chr3_2:47110620-47110639 | Msa0407900:CDS | 20.0% |
| !! | AGAAAGAAATCAAAACAAAT+GGG | + | chr3_2:47110621-47110640 | Msa0407900:CDS | 20.0% |
| !!! | TGAAAAAGATATGACATTTT+TGG | + | chr3_2:47110707-47110726 | Msa0407900:CDS | 20.0% |
| !!! | GAGATCATATGATATTTTTA+AGG | + | chr3_2:47111227-47111246 | Msa0407900:intron | 20.0% |
| !! | AATACAAAAAACTAAATGGA+AGG | - | chr3_2:47111389-47111408 | None:intergenic | 20.0% |
| !!! | AGTCTTTTAATATACTATAC+AGG | - | chr3_2:47111532-47111551 | None:intergenic | 20.0% |
| !!! | TGTTTTATTATATTGCATTG+TGG | + | chr3_2:47112160-47112179 | Msa0407900:three_prime_UTR | 20.0% |
| !! | ACTCTATTTGTATCATTATA+AGG | + | chr3_2:47112307-47112326 | Msa0407900:three_prime_UTR | 20.0% |
| !!! | TTACCTATATTTTTTTAGCG+GGG | + | chr3_2:47109592-47109611 | Msa0407900:intron | 25.0% |
| !!! | TTTTTTTAAAAAACACCGAC+GGG | + | chr3_2:47110057-47110076 | Msa0407900:intron | 25.0% |
| ! | GTCAATAATCTGTCTAAATA+GGG | - | chr3_2:47110172-47110191 | None:intergenic | 25.0% |
| ! | CTATTTAGACAGATTATTGA+CGG | + | chr3_2:47110171-47110190 | Msa0407900:intron | 25.0% |
| ! | TATTTAGACAGATTATTGAC+GGG | + | chr3_2:47110172-47110191 | Msa0407900:intron | 25.0% |
| !!! | CATTTTAAGGATGGTAAAAA+GGG | - | chr3_2:47110222-47110241 | None:intergenic | 25.0% |
| !!! | TCATTTTAAGGATGGTAAAA+AGG | - | chr3_2:47110223-47110242 | None:intergenic | 25.0% |
| !!! | AAGAATACTCATTTTAAGGA+TGG | - | chr3_2:47110231-47110250 | None:intergenic | 25.0% |
| !!! | ATAAAAAAGTGTCATAGCTA+AGG | - | chr3_2:47110416-47110435 | None:intergenic | 25.0% |
| ! | AGATTCTCCTTCAAAAAAAA+TGG | + | chr3_2:47110665-47110684 | Msa0407900:CDS | 25.0% |
| !!! | GAATCTTCCATTTTTTTTGA+AGG | - | chr3_2:47110675-47110694 | None:intergenic | 25.0% |
| ! | AGAGCTTAATTCAAAAGTAA+AGG | + | chr3_2:47110764-47110783 | Msa0407900:CDS | 25.0% |
| ! | TTTATTACTTGTAGCAATGA+AGG | + | chr3_2:47110803-47110822 | Msa0407900:CDS | 25.0% |
| !!! | CATATGATATTTTTAAGGCA+AGG | + | chr3_2:47111232-47111251 | Msa0407900:intron | 25.0% |
| !!! | TTAATCAGAGCTTAGTTTTA+TGG | - | chr3_2:47111336-47111355 | None:intergenic | 25.0% |
| ! | TCGGAATACAAAAAACTAAA+TGG | - | chr3_2:47111393-47111412 | None:intergenic | 25.0% |
| !!! | CTGTTTTAACTATATGTGAA+TGG | + | chr3_2:47111505-47111524 | Msa0407900:intron | 25.0% |
| ! | TTGAGAAGATCAAGATATAA+CGG | - | chr3_2:47112081-47112100 | None:intergenic | 25.0% |
| !! | TTTTTCTTTGACTCATAGTT+TGG | + | chr3_2:47112211-47112230 | Msa0407900:three_prime_UTR | 25.0% |
| !! | GTTTATTATGTTTAGAGTAC+TGG | + | chr3_2:47112264-47112283 | Msa0407900:three_prime_UTR | 25.0% |
| ! | GTTAAGAAGAAGCACATATT+CGG | + | chr3_2:47109249-47109268 | Msa0407900:CDS | 30.0% |
| TTCTTATATATAAGACCGGA+GGG | - | chr3_2:47109469-47109488 | None:intergenic | 30.0% | |
| TTTCTTATATATAAGACCGG+AGG | - | chr3_2:47109470-47109489 | None:intergenic | 30.0% | |
| CGTCAATAATCTGTCTAAAT+AGG | - | chr3_2:47110173-47110192 | None:intergenic | 30.0% | |
| !!! | GCTATGACACTTTTTTATAG+AGG | + | chr3_2:47110418-47110437 | Msa0407900:intron | 30.0% |
| ATCATAGTTATGTATTGCAG+AGG | + | chr3_2:47110593-47110612 | Msa0407900:intron | 30.0% | |
| AAATCAAAACAAATGGGAGA+AGG | + | chr3_2:47110627-47110646 | Msa0407900:CDS | 30.0% | |
| !! | TTGTTGATTTATGCTCTGAA+AGG | - | chr3_2:47111039-47111058 | None:intergenic | 30.0% |
| ! | AACTAAGCTCTGATTAAAAG+TGG | + | chr3_2:47111339-47111358 | Msa0407900:intron | 30.0% |
| !! | TTCTAGATAAAAGCATTGAG+TGG | + | chr3_2:47111632-47111651 | Msa0407900:CDS | 30.0% |
| ! | TTTGCTGTATCTTCATTAGT+TGG | + | chr3_2:47111793-47111812 | Msa0407900:CDS | 30.0% |
| AGCAATGAAAGAAATGAACA+TGG | - | chr3_2:47111953-47111972 | None:intergenic | 30.0% | |
| ATGTTCATTTCTTTCATTGC+TGG | + | chr3_2:47111952-47111971 | Msa0407900:CDS | 30.0% | |
| ACAGATAAATATTCCAAGAG+TGG | + | chr3_2:47111991-47112010 | Msa0407900:CDS | 30.0% | |
| TTGATCTTCTCAAAGTTACA+TGG | + | chr3_2:47112088-47112107 | Msa0407900:CDS | 30.0% | |
| ! | ATTATCTGGGACGACAAAAT+CGG | + | chr3_2:47109545-47109564 | Msa0407900:intron | 35.0% |
| !!! | CTATATTTTTTTAGCGGGGT+GGG | + | chr3_2:47109596-47109615 | Msa0407900:intron | 35.0% |
| ! | TGAAATTTTGAACCCATTGC+TGG | + | chr3_2:47109620-47109639 | Msa0407900:intron | 35.0% |
| !!! | TCATTTCCCTACTTTTTAGC+GGG | - | chr3_2:47109667-47109686 | None:intergenic | 35.0% |
| !!! | CTCATTTCCCTACTTTTTAG+CGG | - | chr3_2:47109668-47109687 | None:intergenic | 35.0% |
| GCTAAAAAGTAGGGAAATGA+GGG | + | chr3_2:47109667-47109686 | Msa0407900:intron | 35.0% | |
| CTAAAAAGTAGGGAAATGAG+GGG | + | chr3_2:47109668-47109687 | Msa0407900:intron | 35.0% | |
| TAAAAAGTAGGGAAATGAGG+GGG | + | chr3_2:47109669-47109688 | Msa0407900:intron | 35.0% | |
| GGGAGAAGGAAATCAAAAAA+TGG | + | chr3_2:47110641-47110660 | Msa0407900:CDS | 35.0% | |
| !!! | TTTTTGGCTGTAGCAAAAAG+TGG | + | chr3_2:47110723-47110742 | Msa0407900:CDS | 35.0% |
| AAGTGGCGTAGTTGAAATTA+TGG | + | chr3_2:47110740-47110759 | Msa0407900:CDS | 35.0% | |
| GAATTACCAGCAAAGAAAAG+TGG | + | chr3_2:47110825-47110844 | Msa0407900:CDS | 35.0% | |
| ! | CATTGTCAGAGTTAGTTTCA+TGG | - | chr3_2:47110938-47110957 | None:intergenic | 35.0% |
| ! | TGTTGCTTCTATGATGGTAA+TGG | - | chr3_2:47111564-47111583 | None:intergenic | 35.0% |
| ! | CTTCTTTGTTGCTTCTATGA+TGG | - | chr3_2:47111570-47111589 | None:intergenic | 35.0% |
| CATCATAGAAGCAACAAAGA+AGG | + | chr3_2:47111568-47111587 | Msa0407900:CDS | 35.0% | |
| TCCTTTCTATACTCACTTCT+CGG | + | chr3_2:47111848-47111867 | Msa0407900:CDS | 35.0% | |
| ! | TTGCCAATGAAGCTTCTTTT+TGG | + | chr3_2:47111898-47111917 | Msa0407900:CDS | 35.0% |
| AAGCCAAAAAGAAGCTTCAT+TGG | - | chr3_2:47111904-47111923 | None:intergenic | 35.0% | |
| AGAAATGAACATGGCAACAA+TGG | - | chr3_2:47111944-47111963 | None:intergenic | 35.0% | |
| ATAGAACAAGATACCACTCT+TGG | - | chr3_2:47112007-47112026 | None:intergenic | 35.0% | |
| ! | GATCAAGATATAACGGAAAC+TGG | - | chr3_2:47112074-47112093 | None:intergenic | 35.0% |
| ATCTTCTCAAAGTTACATGG+AGG | + | chr3_2:47112091-47112110 | Msa0407900:CDS | 35.0% | |
| TGGATTGAAACTCATGAGTT+TGG | + | chr3_2:47112180-47112199 | Msa0407900:three_prime_UTR | 35.0% | |
| TCATAAATGCTTCCAAGAGC+TGG | - | chr3_2:47109278-47109297 | None:intergenic | 40.0% | |
| CCACACATGTATGACTCATA+AGG | - | chr3_2:47109306-47109325 | None:intergenic | 40.0% | |
| CCTTATGAGTCATACATGTG+TGG | + | chr3_2:47109303-47109322 | Msa0407900:CDS | 40.0% | |
| TATGAGTCATACATGTGTGG+TGG | + | chr3_2:47109306-47109325 | Msa0407900:CDS | 40.0% | |
| ATGAGTCATACATGTGTGGT+GGG | + | chr3_2:47109307-47109326 | Msa0407900:CDS | 40.0% | |
| TCATGTTCTCCGTAATCCAA+GGG | - | chr3_2:47109339-47109358 | None:intergenic | 40.0% | |
| !! | TTGAAAGTGTCATGCACGAA+AGG | + | chr3_2:47109388-47109407 | Msa0407900:CDS | 40.0% |
| GACTTAATAACTACTCCCTC+CGG | + | chr3_2:47109451-47109470 | Msa0407900:intron | 40.0% | |
| CCACCCCGCTAAAAAAATAT+AGG | - | chr3_2:47109598-47109617 | None:intergenic | 40.0% | |
| !!! | CCTATATTTTTTTAGCGGGG+TGG | + | chr3_2:47109595-47109614 | Msa0407900:intron | 40.0% |
| ! | TTTTGAACCCATTGCTGGTA+AGG | + | chr3_2:47109625-47109644 | Msa0407900:intron | 40.0% |
| CGCTAAAAAGTAGGGAAATG+AGG | + | chr3_2:47109666-47109685 | Msa0407900:intron | 40.0% | |
| TTTATGGCAGACCGACAAAT+TGG | - | chr3_2:47110091-47110110 | None:intergenic | 40.0% | |
| ! | TCTCACCTTGTCTCGTTTTA+TGG | - | chr3_2:47110107-47110126 | None:intergenic | 40.0% |
| GTCAACTAGATATGTAGGGT+TGG | - | chr3_2:47110133-47110152 | None:intergenic | 40.0% | |
| ! | CGGTGTCAACTAGATATGTA+GGG | - | chr3_2:47110137-47110156 | None:intergenic | 40.0% |
| !! | GTAAAGGCATCTGACAAGAA+AGG | + | chr3_2:47110780-47110799 | Msa0407900:CDS | 40.0% |
| !!! | TTTGTGCCACTTTTCTTTGC+TGG | - | chr3_2:47110834-47110853 | None:intergenic | 40.0% |
| TATTTGCGTGCAGCAAAACA+TGG | + | chr3_2:47110864-47110883 | Msa0407900:CDS | 40.0% | |
| TTCAAGTGCACGCATGATTT+CGG | - | chr3_2:47110895-47110914 | None:intergenic | 40.0% | |
| CACACAACGAAAAAACTGCT+TGG | + | chr3_2:47111108-47111127 | Msa0407900:CDS | 40.0% | |
| ACAACGAAAAAACTGCTTGG+AGG | + | chr3_2:47111111-47111130 | Msa0407900:CDS | 40.0% | |
| AAAACTGCTTGGAGGATATC+TGG | + | chr3_2:47111119-47111138 | Msa0407900:CDS | 40.0% | |
| AAATGATGTGGGACATCAAG+TGG | + | chr3_2:47111153-47111172 | Msa0407900:CDS | 40.0% | |
| !! | CTTCTATGATGGTAATGGTC+TGG | - | chr3_2:47111559-47111578 | None:intergenic | 40.0% |
| AACAAAGAAGGAAAAACCCC+AGG | + | chr3_2:47111580-47111599 | Msa0407900:CDS | 40.0% | |
| AACCCCAGGTGAAATCTTTA+AGG | + | chr3_2:47111594-47111613 | Msa0407900:CDS | 40.0% | |
| CTCCTTAAAGATTTCACCTG+GGG | - | chr3_2:47111599-47111618 | None:intergenic | 40.0% | |
| CCTCCTTAAAGATTTCACCT+GGG | - | chr3_2:47111600-47111619 | None:intergenic | 40.0% | |
| TCCTCCTTAAAGATTTCACC+TGG | - | chr3_2:47111601-47111620 | None:intergenic | 40.0% | |
| ACAGGGAAACCAACATTTGA+AGG | + | chr3_2:47111751-47111770 | Msa0407900:CDS | 40.0% | |
| CAGGGAAACCAACATTTGAA+GGG | + | chr3_2:47111752-47111771 | Msa0407900:CDS | 40.0% | |
| ACAGCAAATCCTTCAAATGC+TGG | - | chr3_2:47111781-47111800 | None:intergenic | 40.0% | |
| TCCGAGAAGTGAGTATAGAA+AGG | - | chr3_2:47111852-47111871 | None:intergenic | 40.0% | |
| ACAACTCCATAGAATGTGAG+AGG | - | chr3_2:47112051-47112070 | None:intergenic | 40.0% | |
| TCTCAAAGTTACATGGAGGA+AGG | + | chr3_2:47112095-47112114 | Msa0407900:CDS | 40.0% | |
| TTAACACCCTTGATACTTGG+TGG | - | chr3_2:47112126-47112145 | None:intergenic | 40.0% | |
| AGCTTAACACCCTTGATACT+TGG | - | chr3_2:47112129-47112148 | None:intergenic | 40.0% | |
| TGAGTCATACATGTGTGGTG+GGG | + | chr3_2:47109308-47109327 | Msa0407900:CDS | 45.0% | |
| GTCATGTTCTCCGTAATCCA+AGG | - | chr3_2:47109340-47109359 | None:intergenic | 45.0% | |
| AGTGTCATGCACGAAAGGAA+AGG | + | chr3_2:47109393-47109412 | Msa0407900:CDS | 45.0% | |
| !!! | TTTTAGCGGGTTAGGCGTAT+CGG | - | chr3_2:47109654-47109673 | None:intergenic | 45.0% |
| GCCTAACCCGCTAAAAAGTA+GGG | + | chr3_2:47109658-47109677 | Msa0407900:intron | 45.0% | |
| !!! | TCCCTACTTTTTAGCGGGTT+AGG | - | chr3_2:47109662-47109681 | None:intergenic | 45.0% |
| GTCTGCCATAAAACGAGACA+AGG | + | chr3_2:47110099-47110118 | Msa0407900:intron | 45.0% | |
| ! | GCGGTGTCAACTAGATATGT+AGG | - | chr3_2:47110138-47110157 | None:intergenic | 45.0% |
| TCTAAATAGGGCGCATAGTG+GGG | - | chr3_2:47110160-47110179 | None:intergenic | 45.0% | |
| GTCTAAATAGGGCGCATAGT+GGG | - | chr3_2:47110161-47110180 | None:intergenic | 45.0% | |
| TGTCTAAATAGGGCGCATAG+TGG | - | chr3_2:47110162-47110181 | None:intergenic | 45.0% | |
| TAGACAACCGCAAGTTGTTG+AGG | + | chr3_2:47110986-47111005 | Msa0407900:CDS | 45.0% | |
| AGACAACCGCAAGTTGTTGA+GGG | + | chr3_2:47110987-47111006 | Msa0407900:CDS | 45.0% | |
| GTTGTGGAAGAGGCTTTCTA+TGG | + | chr3_2:47111010-47111029 | Msa0407900:CDS | 45.0% | |
| GATGTCCCACATCATTTGCA+TGG | - | chr3_2:47111150-47111169 | None:intergenic | 45.0% | |
| ! | CCCAGGTGAAATCTTTAAGG+AGG | + | chr3_2:47111597-47111616 | Msa0407900:CDS | 45.0% |
| GAATGTGAGAGGCAAGCAAA+TGG | - | chr3_2:47112040-47112059 | None:intergenic | 45.0% | |
| TGCTTGCCTCTCACATTCTA+TGG | + | chr3_2:47112042-47112061 | Msa0407900:CDS | 45.0% | |
| !! | TCAAGGGTGTTAAGCTGTAG+AGG | + | chr3_2:47112133-47112152 | Msa0407900:CDS | 45.0% |
| !! | GTATAAATATATAAATTTAT+AGG | - | chr3_2:47110009-47110028 | None:intergenic | 5.0% |
| !!! | AAAAAATAAAAATGTTTTTT+CGG | - | chr3_2:47111412-47111431 | None:intergenic | 5.0% |
| CATATTCGGTAGCCAGCTCT+TGG | + | chr3_2:47109263-47109282 | Msa0407900:CDS | 50.0% | |
| ! | TCTGGGACGACAAAATCGGT+TGG | + | chr3_2:47109549-47109568 | Msa0407900:intron | 50.0% |
| CAAAATCGGTTGGATCCGTC+AGG | + | chr3_2:47109559-47109578 | Msa0407900:intron | 50.0% | |
| GGTAAACGAGTCCAACCTGA+CGG | - | chr3_2:47109577-47109596 | None:intergenic | 50.0% | |
| TCGGACACCTTACCAGCAAT+GGG | - | chr3_2:47109635-47109654 | None:intergenic | 50.0% | |
| ATCGGACACCTTACCAGCAA+TGG | - | chr3_2:47109636-47109655 | None:intergenic | 50.0% | |
| CGCCTAACCCGCTAAAAAGT+AGG | + | chr3_2:47109657-47109676 | Msa0407900:intron | 50.0% | |
| TCCTCCGTATAGTGTGTGTG+TGG | + | chr3_2:47109785-47109804 | Msa0407900:intron | 50.0% | |
| CCTCCGTATAGTGTGTGTGT+GGG | + | chr3_2:47109786-47109805 | Msa0407900:intron | 50.0% | |
| CTCCGTATAGTGTGTGTGTG+GGG | + | chr3_2:47109787-47109806 | Msa0407900:intron | 50.0% | |
| TCCGTATAGTGTGTGTGTGG+GGG | + | chr3_2:47109788-47109807 | Msa0407900:intron | 50.0% | |
| !! | AAATTGGCGGGTTAACCCGT+CGG | - | chr3_2:47110075-47110094 | None:intergenic | 50.0% |
| GGGTTAACCCGCCAATTTGT+CGG | + | chr3_2:47110077-47110096 | Msa0407900:intron | 50.0% | |
| ATGGCAGACCGACAAATTGG+CGG | - | chr3_2:47110088-47110107 | None:intergenic | 50.0% | |
| GATTATTGACGGGACGAGAC+CGG | + | chr3_2:47110182-47110201 | Msa0407900:intron | 50.0% | |
| ATTATTGACGGGACGAGACC+GGG | + | chr3_2:47110183-47110202 | Msa0407900:intron | 50.0% | |
| GACAACCGCAAGTTGTTGAG+GGG | + | chr3_2:47110988-47111007 | Msa0407900:CDS | 50.0% | |
| CACAACCCCTCAACAACTTG+CGG | - | chr3_2:47110996-47111015 | None:intergenic | 50.0% | |
| TTGTTGAGGGGTTGTGGAAG+AGG | + | chr3_2:47111000-47111019 | Msa0407900:CDS | 50.0% | |
| TGCTTGGAGGATATCTGGTG+CGG | + | chr3_2:47111124-47111143 | Msa0407900:CDS | 50.0% | |
| TGCGGCCATGCAAATGATGT+GGG | + | chr3_2:47111142-47111161 | Msa0407900:CDS | 50.0% | |
| GTGGGACATCAAGTGGTACA+AGG | + | chr3_2:47111160-47111179 | Msa0407900:CDS | 50.0% | |
| GACGTTGCCTGATGTAGCAA+AGG | - | chr3_2:47111713-47111732 | None:intergenic | 50.0% | |
| CTGTTTCCTGATTGCCTCCA+GGG | - | chr3_2:47111735-47111754 | None:intergenic | 50.0% | |
| CTGGAGGCAATCAGGAAACA+GGG | + | chr3_2:47111734-47111753 | Msa0407900:CDS | 50.0% | |
| GCTGGTTGCCCTTCAAATGT+TGG | - | chr3_2:47111763-47111782 | None:intergenic | 50.0% | |
| GAAGGGCAACCAGCATTTGA+AGG | + | chr3_2:47111769-47111788 | Msa0407900:CDS | 50.0% | |
| GTGCCACCACCAAGTATCAA+GGG | + | chr3_2:47112117-47112136 | Msa0407900:CDS | 50.0% | |
| ! | ACACCCTTGATACTTGGTGG+TGG | - | chr3_2:47112123-47112142 | None:intergenic | 50.0% |
| GGGGCTCATCCCTTGGATTA+CGG | + | chr3_2:47109327-47109346 | Msa0407900:CDS | 55.0% | |
| ATCGGTTGGATCCGTCAGGT+TGG | + | chr3_2:47109563-47109582 | Msa0407900:intron | 55.0% | |
| AAGTAGGGAAATGAGGGGGC+AGG | + | chr3_2:47109673-47109692 | Msa0407900:intron | 55.0% | |
| CCCACACACACACTATACGG+AGG | - | chr3_2:47109789-47109808 | None:intergenic | 55.0% | |
| CCCCCCACACACACACTATA+CGG | - | chr3_2:47109792-47109811 | None:intergenic | 55.0% | |
| CCGTATAGTGTGTGTGTGGG+GGG | + | chr3_2:47109789-47109808 | Msa0407900:intron | 55.0% | |
| CGTATAGTGTGTGTGTGGGG+GGG | + | chr3_2:47109790-47109809 | Msa0407900:intron | 55.0% | |
| TGGCAGACCGACAAATTGGC+GGG | - | chr3_2:47110087-47110106 | None:intergenic | 55.0% | |
| ! | AAATAGGGCGCATAGTGGGG+CGG | - | chr3_2:47110157-47110176 | None:intergenic | 55.0% |
| CGCAAGTTGTTGAGGGGTTG+TGG | + | chr3_2:47110994-47111013 | Msa0407900:CDS | 55.0% | |
| GTGCGGCCATGCAAATGATG+TGG | + | chr3_2:47111141-47111160 | Msa0407900:CDS | 55.0% | |
| GGCGTCTCCTTTGCTACATC+AGG | + | chr3_2:47111703-47111722 | Msa0407900:CDS | 55.0% | |
| CCTGTTTCCTGATTGCCTCC+AGG | - | chr3_2:47111736-47111755 | None:intergenic | 55.0% | |
| CCTGGAGGCAATCAGGAAAC+AGG | + | chr3_2:47111733-47111752 | Msa0407900:CDS | 55.0% | |
| ! | GGTGCCACCACCAAGTATCA+AGG | + | chr3_2:47112116-47112135 | Msa0407900:CDS | 55.0% |
| TAGGGAAATGAGGGGGCAGG+AGG | + | chr3_2:47109676-47109695 | Msa0407900:intron | 60.0% | |
| AGGGAAATGAGGGGGCAGGA+GGG | + | chr3_2:47109677-47109696 | Msa0407900:intron | 60.0% | |
| ATAGTGTGTGTGTGGGGGGG+TGG | + | chr3_2:47109793-47109812 | Msa0407900:intron | 60.0% | |
| TAGTGTGTGTGTGGGGGGGT+GGG | + | chr3_2:47109794-47109813 | Msa0407900:intron | 60.0% | |
| GTTGTAGCAGCACTCGTCGC+AGG | + | chr3_2:47111682-47111701 | Msa0407900:CDS | 60.0% | |
| GCTACATCAGGCAACGTCCC+TGG | + | chr3_2:47111715-47111734 | Msa0407900:CDS | 60.0% | |
| ACATCAGGCAACGTCCCTGG+AGG | + | chr3_2:47111718-47111737 | Msa0407900:CDS | 60.0% | |
| CAACGTCCCTGGAGGCAATC+AGG | + | chr3_2:47111726-47111745 | Msa0407900:CDS | 60.0% | |
| ! | GTGTGGTGGGGCTCATCCCT+TGG | + | chr3_2:47109320-47109339 | Msa0407900:CDS | 65.0% |
| GGCAGGAGGGTTGACCCGTT+AGG | + | chr3_2:47109690-47109709 | Msa0407900:intron | 65.0% | |
| ATTGACGGGACGAGACCGGG+CGG | + | chr3_2:47110186-47110205 | Msa0407900:intron | 65.0% | |
| AAGGGTCAATCCGCTCCGCC+CGG | - | chr3_2:47110204-47110223 | None:intergenic | 65.0% | |
| ! | CGGGACGAGACCGGGCGGAG+CGG | + | chr3_2:47110191-47110210 | Msa0407900:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 47109240 | 47112355 | 47109240 | ID=Msa0407900;Name=Msa0407900 |
| chr3_2 | mRNA | 47109240 | 47112355 | 47109240 | ID=Msa0407900-mRNA-1;Parent=Msa0407900;Name=Msa0407900-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|1|0.33|1|1|1|3|203|452 |
| chr3_2 | exon | 47109240 | 47109414 | 47109240 | ID=Msa0407900-mRNA-1:exon:9055;Parent=Msa0407900-mRNA-1 |
| chr3_2 | exon | 47110613 | 47111181 | 47110613 | ID=Msa0407900-mRNA-1:exon:9056;Parent=Msa0407900-mRNA-1 |
| chr3_2 | exon | 47111538 | 47112355 | 47111538 | ID=Msa0407900-mRNA-1:exon:9057;Parent=Msa0407900-mRNA-1 |
| chr3_2 | CDS | 47109240 | 47109414 | 47109240 | ID=Msa0407900-mRNA-1:cds;Parent=Msa0407900-mRNA-1 |
| chr3_2 | CDS | 47110613 | 47111181 | 47110613 | ID=Msa0407900-mRNA-1:cds;Parent=Msa0407900-mRNA-1 |
| chr3_2 | CDS | 47111538 | 47112152 | 47111538 | ID=Msa0407900-mRNA-1:cds;Parent=Msa0407900-mRNA-1 |
| chr3_2 | three_prime_UTR | 47112153 | 47112355 | 47112153 | ID=Msa0407900-mRNA-1:three_prime_utr;Parent=Msa0407900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
