AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1179460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1179460 MtrunA17_Chr8g0342571 97.468 79 2 0 1 79 1 79 1.19e-49 151
Msa1179460 MtrunA17_Chr2g0299631 57.534 73 30 1 7 78 44 116 6.80e-17 71.6
Msa1179460 MtrunA17_Chr2g0299631 37.209 129 24 3 8 79 91 219 1.04e-13 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1179460 AT1G72690.1 60.294 68 25 1 14 79 9 76 6.82e-23 84.0
Msa1179460 AT5G57000.2 56.061 66 25 1 18 79 23 88 2.46e-17 71.2
Msa1179460 AT5G57000.1 56.061 66 25 1 18 79 70 135 6.75e-17 71.2
Msa1179460 AT1G17490.1 50.667 75 26 4 5 79 3 66 3.11e-13 59.3

Find 40 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACTTAATGATTCGGTTTC+AGG 0.197193 8_1:-12879400 Msa1179460:intron
GTTTAGCTTGACGATGAATT+TGG 0.208179 8_1:-12875888 Msa1179460:three_prime_UTR
ACTCTTTGTTACATAATAAA+AGG 0.230852 8_1:+12875928 None:intergenic
TGAAACCGAATCATTAAGTT+TGG 0.256006 8_1:+12879402 None:intergenic
GTTGATGTTCCCTTTAGATA+TGG 0.289908 8_1:-12875696 Msa1179460:three_prime_UTR
CCTCAAACTCAAACGTTGTT+TGG 0.294262 8_1:-12879450 Msa1179460:five_prime_UTR
CCAAACAACGTTTGAGTTTG+AGG 0.332128 8_1:+12879450 None:intergenic
TTAGCCCTCTCAAGAATGTT+TGG 0.369322 8_1:+12876123 None:intergenic
GATCAATTCAATGGCAGAAA+AGG 0.390241 8_1:-12879428 Msa1179460:exon
GAAACCGAATCATTAAGTTT+GGG 0.402495 8_1:+12879403 None:intergenic
CGTTGTTTGGATCAATTCAA+TGG 0.403360 8_1:-12879437 Msa1179460:exon
GGAACCCAAACTTAATGATT+CGG 0.408365 8_1:-12879407 Msa1179460:CDS
TTCCATGAGTTTCTTTGTCA+TGG 0.419220 8_1:+12876058 None:intergenic
ATAATACTTTCCATATCTAA+AGG 0.433907 8_1:+12875686 None:intergenic
ATCGCCATGCTACCATGGTT+TGG 0.441123 8_1:-12875806 Msa1179460:three_prime_UTR
TCAAGCTAAACATAAGTAAG+AGG 0.446009 8_1:+12875900 None:intergenic
TCTTATCAACTAAAGAAACT+TGG 0.467724 8_1:-12879565 Msa1179460:five_prime_UTR
AAGCTCCCGGTGTGTTTGAA+AGG 0.468558 8_1:-12875993 Msa1179460:CDS
TAATACTTTCCATATCTAAA+GGG 0.473338 8_1:+12875687 None:intergenic
ATTAACACTGTTGAGAGCAT+TGG 0.477412 8_1:+12875765 None:intergenic
CTATACTACTATGTTTGCCT+TGG 0.484853 8_1:-12875734 Msa1179460:three_prime_UTR
TGAAGCTGTAGTTATTAGCT+AGG 0.491567 8_1:-12875956 Msa1179460:exon
AGCTCCCGGTGTGTTTGAAA+GGG 0.525240 8_1:-12875992 Msa1179460:CDS
CGCCATGACAAAGAAACTCA+TGG 0.536708 8_1:-12876060 Msa1179460:CDS
CATTCTTGAGAGGGCTAAGG+AGG 0.553782 8_1:-12876118 Msa1179460:CDS
AAACATTCTTGAGAGGGCTA+AGG 0.562461 8_1:-12876121 Msa1179460:CDS
CTTCACCCTTTCAAACACAC+CGG 0.571153 8_1:+12875987 None:intergenic
AGCTCCAAACATTCTTGAGA+GGG 0.578483 8_1:-12876127 Msa1179460:CDS
GTTGAAGAAGTCAAAGCTCC+CGG 0.580117 8_1:-12876006 Msa1179460:CDS
ATAAAATCGCCATGCTACCA+TGG 0.580809 8_1:-12875811 Msa1179460:three_prime_UTR
TGAGTTTCTTTGTCATGGCG+AGG 0.584602 8_1:+12876063 None:intergenic
CGGTGTGTTTGAAAGGGTGA+AGG 0.593554 8_1:-12875986 Msa1179460:CDS
TTCACCCTTTCAAACACACC+GGG 0.602200 8_1:+12875988 None:intergenic
AAGCTCCAAACATTCTTGAG+AGG 0.602370 8_1:-12876128 Msa1179460:CDS
TTAACCAAACCATGGTAGCA+TGG 0.603828 8_1:+12875802 None:intergenic
GAGGGCTAAGGAGGAGACTG+AGG 0.618637 8_1:-12876109 Msa1179460:CDS
ATGACAAAGAAACTCATGGA+AGG 0.643744 8_1:-12876056 Msa1179460:CDS
AAGGAATGATGACATTGATG+AGG 0.657096 8_1:-12876037 Msa1179460:CDS
AGTGTAATTTAACCAAACCA+TGG 0.662655 8_1:+12875794 None:intergenic
AGGAATGATGACATTGATGA+GGG 0.670735 8_1:-12876036 Msa1179460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGAATATTATTTGTAAAA+CGG + chr8_1:12875890-12875909 None:intergenic 10.0%
!! CTAATTTCTATAACTAAAAA+GGG + chr8_1:12876001-12876020 None:intergenic 15.0%
!!! TTTTTAGTTATAGAAATTAG+CGG - chr8_1:12876001-12876020 Msa1179460:CDS 15.0%
!! ATAAAATATAATAACCAACA+CGG + chr8_1:12877166-12877185 None:intergenic 15.0%
!!! ATATTTTATTGAAAATGACA+TGG - chr8_1:12877177-12877196 Msa1179460:intron 15.0%
!! AAAACATGATAAGTAATTAT+TGG - chr8_1:12877753-12877772 Msa1179460:intron 15.0%
!!! TTATTGGTTTTAGATATATA+TGG - chr8_1:12877769-12877788 Msa1179460:intron 15.0%
!!! TATTGGTTTTAGATATATAT+GGG - chr8_1:12877770-12877789 Msa1179460:intron 15.0%
!!! TGACTATTTTATAAATGATT+TGG - chr8_1:12877834-12877853 Msa1179460:intron 15.0%
!! TGTTATATTATTGTATTGAA+AGG - chr8_1:12878375-12878394 Msa1179460:intron 15.0%
!! GTTATATTATTGTATTGAAA+GGG - chr8_1:12878376-12878395 Msa1179460:intron 15.0%
!!! TGACTATTTTATAAATGATT+TGG - chr8_1:12877834-12877853 Msa1179460:intron 15.0%
!!! TATTCTTGATTTAGATTTTG+TGG - chr8_1:12875911-12875930 Msa1179460:three_prime_UTR 20.0%
!!! TATAACTAAAAAGGGTATTA+TGG + chr8_1:12875993-12876012 None:intergenic 20.0%
!! GCTAATTTCTATAACTAAAA+AGG + chr8_1:12876002-12876021 None:intergenic 20.0%
!!! TTTTAGTTATAGAAATTAGC+GGG - chr8_1:12876002-12876021 Msa1179460:CDS 20.0%
!!! TGTAGTTTTTGTCAAAATTA+TGG - chr8_1:12876552-12876571 Msa1179460:intron 20.0%
!! TATGTTTGACAAAATTACAA+TGG - chr8_1:12876657-12876676 Msa1179460:intron 20.0%
!!! TTTTCTAACTCACAATAATT+AGG - chr8_1:12876987-12877006 Msa1179460:intron 20.0%
!!! ATCTAGTTTTTTCTTTAATC+AGG - chr8_1:12877091-12877110 Msa1179460:intron 20.0%
!!! TCTAGTTTTTTCTTTAATCA+GGG - chr8_1:12877092-12877111 Msa1179460:intron 20.0%
!!! ATAATCTCTGTATAAGTTTT+CGG + chr8_1:12877302-12877321 None:intergenic 20.0%
!!! GTTTTTTCTTTAATTAGAGT+TGG - chr8_1:12878281-12878300 Msa1179460:intron 20.0%
!! ATACAATAATATAACAAGCA+TGG + chr8_1:12878371-12878390 None:intergenic 20.0%
!! GAAACATGATAAGTAATTAT+TGG - chr8_1:12878935-12878954 Msa1179460:intron 20.0%
!!! GATAAGTAATTATTGGTTTT+AGG - chr8_1:12877760-12877779 Msa1179460:intron 20.0%
!! ATGAAACAGAATATACAAAA+GGG + chr8_1:12879063-12879082 None:intergenic 20.0%
!! AATGAAACAGAATATACAAA+AGG + chr8_1:12879064-12879083 None:intergenic 20.0%
!! ACTCTTTGTTACATAATAAA+AGG + chr8_1:12879305-12879324 None:intergenic 20.0%
!! TAATACTTTCCATATCTAAA+GGG + chr8_1:12879546-12879565 None:intergenic 20.0%
!! ATAATACTTTCCATATCTAA+AGG + chr8_1:12879547-12879566 None:intergenic 20.0%
! TCTTATCAACTAAAGAAACT+TGG - chr8_1:12875665-12875684 Msa1179460:three_prime_UTR 25.0%
!!! AATAACAGTGAACCTTTTTT+TGG - chr8_1:12875710-12875729 Msa1179460:three_prime_UTR 25.0%
! GAAAATAACTTTCAACAATG+GGG + chr8_1:12876082-12876101 None:intergenic 25.0%
! GGAAAATAACTTTCAACAAT+GGG + chr8_1:12876083-12876102 None:intergenic 25.0%
! AGGAAAATAACTTTCAACAA+TGG + chr8_1:12876084-12876103 None:intergenic 25.0%
!!! GTTGAAAGTTATTTTCCTTT+TGG - chr8_1:12876086-12876105 Msa1179460:CDS 25.0%
!!! ATTTTTTGAAGCTCAATATC+CGG - chr8_1:12876147-12876166 Msa1179460:intron 25.0%
! TGTAATATGCATGAGTTTAT+AGG + chr8_1:12876344-12876363 None:intergenic 25.0%
! TGGTGAATTTAACAAAATCA+CGG + chr8_1:12876583-12876602 None:intergenic 25.0%
!!! ATTTTGGTTCATTGCAAATT+TGG - chr8_1:12876626-12876645 Msa1179460:intron 25.0%
!!! TTTTGGTTCATTGCAAATTT+GGG - chr8_1:12876627-12876646 Msa1179460:intron 25.0%
! GAGTTTGACATATTCATATT+GGG + chr8_1:12876735-12876754 None:intergenic 25.0%
! TGAGTTTGACATATTCATAT+TGG + chr8_1:12876736-12876755 None:intergenic 25.0%
! ACATGATAAGAATCTATTTG+TGG - chr8_1:12876865-12876884 Msa1179460:intron 25.0%
!! TCTGAAAGTTCTTTTCTTTT+TGG - chr8_1:12876930-12876949 Msa1179460:intron 25.0%
!! TTTTATTGAAAATGACATGG+AGG - chr8_1:12877180-12877199 Msa1179460:intron 25.0%
!! TAATCTCTGTATAAGTTTTC+GGG + chr8_1:12877301-12877320 None:intergenic 25.0%
!! TGTAGCTTTTGTCAAAATTA+TGG - chr8_1:12877460-12877479 Msa1179460:intron 25.0%
! ATTTGGATTTACAGTGAATT+TGG + chr8_1:12877628-12877647 None:intergenic 25.0%
! ATAAGATTTGAGTGCATATT+TGG + chr8_1:12877645-12877664 None:intergenic 25.0%
! AGGAAAATAACTTTCAACAA+TGG + chr8_1:12876084-12876103 None:intergenic 25.0%
!!! GTTGAAAGTTATTTTCCTTT+TGG - chr8_1:12876086-12876105 Msa1179460:CDS 25.0%
! AAACAATTCCTATGTTTGAT+CGG + chr8_1:12878055-12878074 None:intergenic 25.0%
! ATCAACGATACTAATTATTG+GGG + chr8_1:12878184-12878203 None:intergenic 25.0%
! GATCAACGATACTAATTATT+GGG + chr8_1:12878185-12878204 None:intergenic 25.0%
! TTATTGTATTGAAAGGGATA+TGG - chr8_1:12878382-12878401 Msa1179460:intron 25.0%
!!! TATGGAGGTTTTATTTTGAA+AGG - chr8_1:12878400-12878419 Msa1179460:intron 25.0%
!!! TTATTTTGAAAGGAGTATAG+AGG - chr8_1:12878410-12878429 Msa1179460:intron 25.0%
! TAATCTCCATAAAAGTCATT+AGG + chr8_1:12878499-12878518 None:intergenic 25.0%
!!! TTATTGGTTTTAGGTATATG+TGG - chr8_1:12878951-12878970 Msa1179460:intron 25.0%
!!! TATTGGTTTTAGGTATATGT+GGG - chr8_1:12878952-12878971 Msa1179460:intron 25.0%
! TGAAACAGAATATACAAAAG+GGG + chr8_1:12879062-12879081 None:intergenic 25.0%
! TTTGACAAAAATTGCACTTT+AGG - chr8_1:12879390-12879409 Msa1179460:intron 25.0%
GAAACCGAATCATTAAGTTT+GGG + chr8_1:12875830-12875849 None:intergenic 30.0%
TGAAACCGAATCATTAAGTT+TGG + chr8_1:12875831-12875850 None:intergenic 30.0%
!! AAACTTAATGATTCGGTTTC+AGG - chr8_1:12875830-12875849 Msa1179460:three_prime_UTR 30.0%
!! AGTTATTTTCCTTTTGGTTG+TGG - chr8_1:12876092-12876111 Msa1179460:CDS 30.0%
ACCAATGCTAATGACTTATA+TGG - chr8_1:12876384-12876403 Msa1179460:intron 30.0%
TCCATATAAGTCATTAGCAT+TGG + chr8_1:12876388-12876407 None:intergenic 30.0%
TGCATTGAGTTAAACAACTT+AGG + chr8_1:12876467-12876486 None:intergenic 30.0%
TGTTTAACTCAATGCATGTT+TGG - chr8_1:12876471-12876490 Msa1179460:intron 30.0%
TACATGCATGTTTGTATTGA+TGG + chr8_1:12876603-12876622 None:intergenic 30.0%
! AAACATGCATGTAGTGATTT+TGG - chr8_1:12876610-12876629 Msa1179460:intron 30.0%
TTAGAGCTTCAACAAAATCA+TGG + chr8_1:12876685-12876704 None:intergenic 30.0%
GAAAAGAACTTTCAGAAATG+AGG + chr8_1:12876926-12876945 None:intergenic 30.0%
!!! AGTTCTTTTCTTTTTGGTTG+TGG - chr8_1:12876936-12876955 Msa1179460:intron 30.0%
!!! GTTTTTTCTTTAATCAGGGT+TGG - chr8_1:12877096-12877115 Msa1179460:intron 30.0%
!! ATGGAGGTTTTATCTTTGAA+AGG - chr8_1:12877196-12877215 Msa1179460:intron 30.0%
! TTAATGCATGTTTGGATTAG+CGG - chr8_1:12877387-12877406 Msa1179460:intron 30.0%
TAAGTGCATGTTTGAATTGA+TGG + chr8_1:12877510-12877529 None:intergenic 30.0%
!! AGTTATTTTCCTTTTGGTTG+TGG - chr8_1:12876092-12876111 Msa1179460:CDS 30.0%
CTTTCTTGAAGTTTAGTATC+CGG - chr8_1:12877945-12877964 Msa1179460:intron 30.0%
TTCAAACCTAAGATCTATAG+AGG - chr8_1:12878088-12878107 Msa1179460:intron 30.0%
TCAAACCTAAGATCTATAGA+GGG - chr8_1:12878089-12878108 Msa1179460:intron 30.0%
GGATCAACGATACTAATTAT+TGG + chr8_1:12878186-12878205 None:intergenic 30.0%
TTCAGGTATACCTATAACTT+AGG - chr8_1:12878216-12878235 Msa1179460:intron 30.0%
TCATAGCATACCTAAGTTAT+AGG + chr8_1:12878229-12878248 None:intergenic 30.0%
TGTAATATGCTTGAGTTCAT+AGG + chr8_1:12878450-12878469 None:intergenic 30.0%
! ACCAATCCTAATGACTTTTA+TGG - chr8_1:12878490-12878509 Msa1179460:intron 30.0%
TCCATAAAAGTCATTAGGAT+TGG + chr8_1:12878494-12878513 None:intergenic 30.0%
TTGAGTGCATATTGGATTAA+CGG + chr8_1:12878831-12878850 None:intergenic 30.0%
TCAAGCTAAACATAAGTAAG+AGG + chr8_1:12879333-12879352 None:intergenic 30.0%
AGTGTAATTTAACCAAACCA+TGG + chr8_1:12879439-12879458 None:intergenic 30.0%
! TGCGTTGTTGTTCCAAAAAA+AGG + chr8_1:12875725-12875744 None:intergenic 35.0%
CGTTGTTTGGATCAATTCAA+TGG - chr8_1:12875793-12875812 Msa1179460:three_prime_UTR 35.0%
GATCAATTCAATGGCAGAAA+AGG - chr8_1:12875802-12875821 Msa1179460:three_prime_UTR 35.0%
GGAACCCAAACTTAATGATT+CGG - chr8_1:12875823-12875842 Msa1179460:three_prime_UTR 35.0%
!!! TAAGCTATGGCTCTTGTTTT+TGG - chr8_1:12876034-12876053 Msa1179460:CDS 35.0%
GTGCAGACAATTCTTATGTT+TGG + chr8_1:12876261-12876280 None:intergenic 35.0%
ACATAAGAATTGTCTGCACT+TGG - chr8_1:12876262-12876281 Msa1179460:intron 35.0%
AGTTTATAGGTTCAAGGCTT+AGG + chr8_1:12876331-12876350 None:intergenic 35.0%
TGCATGAGTTTATAGGTTCA+AGG + chr8_1:12876337-12876356 None:intergenic 35.0%
!! AGCATTGGTCTATCATTAAG+AGG + chr8_1:12876373-12876392 None:intergenic 35.0%
TCAATGCATGTTTGGATTGA+CGG - chr8_1:12876479-12876498 Msa1179460:intron 35.0%
TGAGTGCATATTTGGATCAA+CGG + chr8_1:12876759-12876778 None:intergenic 35.0%
ACAGGATTTGAGTGCATATT+TGG + chr8_1:12876767-12876786 None:intergenic 35.0%
TATCAACACGTTCTCTCTTT+CGG + chr8_1:12876832-12876851 None:intergenic 35.0%
TCTAGGTATACTCACAACTT+AGG - chr8_1:12877030-12877049 Msa1179460:intron 35.0%
! AAAGGAGTATAGTCGTATAG+AGG - chr8_1:12877214-12877233 Msa1179460:intron 35.0%
!! TCTGTATAAGTTTTCGGGAT+TGG + chr8_1:12877296-12877315 None:intergenic 35.0%
ATCCAAACATGCATTAACTC+AGG + chr8_1:12877384-12877403 None:intergenic 35.0%
ATGGTGAACTAACAAAGTCA+TGG + chr8_1:12877491-12877510 None:intergenic 35.0%
! TCTTTGGTTCATTGCAAGTT+TGG - chr8_1:12877538-12877557 Msa1179460:intron 35.0%
!! GTGGTTAGTCTGACAAATTA+CGG - chr8_1:12877565-12877584 Msa1179460:intron 35.0%
TTGCTTCAACAAAATCATGG+TGG + chr8_1:12877593-12877612 None:intergenic 35.0%
CACTTGCTTCAACAAAATCA+TGG + chr8_1:12877596-12877615 None:intergenic 35.0%
AATCAGTACAAATTCCTGAC+AGG - chr8_1:12877688-12877707 Msa1179460:intron 35.0%
!! TTGTTCTCTCTTTTGGAGAT+AGG + chr8_1:12877714-12877733 None:intergenic 35.0%
! TATCCAGTTGTTCTCTCTTT+TGG + chr8_1:12877721-12877740 None:intergenic 35.0%
TACATAAGACCACAACCAAA+AGG + chr8_1:12877903-12877922 None:intergenic 35.0%
!!! TTTTGGTTGTGGTCTTATGT+AGG - chr8_1:12877902-12877921 Msa1179460:intron 35.0%
TAGGAATTGTTTGCACTTGA+CGG - chr8_1:12878063-12878082 Msa1179460:intron 35.0%
CAAACCTAAGATCTATAGAG+GGG - chr8_1:12878090-12878109 Msa1179460:intron 35.0%
AACAAACATCTCAACCATCT+GGG + chr8_1:12878154-12878173 None:intergenic 35.0%
AAACAAACATCTCAACCATC+TGG + chr8_1:12878155-12878174 None:intergenic 35.0%
!! AAGCATGGTGTTATAAGAGT+TGG + chr8_1:12878356-12878375 None:intergenic 35.0%
TTGTATTGAAAGGGATATGG+AGG - chr8_1:12878385-12878404 Msa1179460:intron 35.0%
TGCATTAAGTCAAGCAACTT+AGG + chr8_1:12878573-12878592 None:intergenic 35.0%
TGCTTGACTTAATGCATGTT+TGG - chr8_1:12878577-12878596 Msa1179460:intron 35.0%
! TCTTTGGTTCATTGCAAGTT+TGG - chr8_1:12877538-12877557 Msa1179460:intron 35.0%
TCATTGCAAGTTTGGATTGT+TGG - chr8_1:12878735-12878754 Msa1179460:intron 35.0%
! TGGCGAGTTTGACAATTTTA+CGG - chr8_1:12878755-12878774 Msa1179460:intron 35.0%
TATTGGATTAACGGTGAGTT+TGG + chr8_1:12878822-12878841 None:intergenic 35.0%
TATCCACATGTTCTCTCTTT+CGG + chr8_1:12878903-12878922 None:intergenic 35.0%
TTCCATGAGTTTCTTTGTCA+TGG + chr8_1:12879175-12879194 None:intergenic 35.0%
ATGACAAAGAAACTCATGGA+AGG - chr8_1:12879174-12879193 Msa1179460:intron 35.0%
AAGGAATGATGACATTGATG+AGG - chr8_1:12879193-12879212 Msa1179460:intron 35.0%
AGGAATGATGACATTGATGA+GGG - chr8_1:12879194-12879213 Msa1179460:intron 35.0%
TGAAGCTGTAGTTATTAGCT+AGG - chr8_1:12879274-12879293 Msa1179460:intron 35.0%
!! GTTTAGCTTGACGATGAATT+TGG - chr8_1:12879342-12879361 Msa1179460:intron 35.0%
! ATTAACACTGTTGAGAGCAT+TGG + chr8_1:12879468-12879487 None:intergenic 35.0%
CTATACTACTATGTTTGCCT+TGG - chr8_1:12879496-12879515 Msa1179460:five_prime_UTR 35.0%
ACAGAAACAAAAAACAGCCA+AGG + chr8_1:12879516-12879535 None:intergenic 35.0%
GTTGATGTTCCCTTTAGATA+TGG - chr8_1:12879534-12879553 Msa1179460:five_prime_UTR 35.0%
! CCAAACAACGTTTGAGTTTG+AGG + chr8_1:12875783-12875802 None:intergenic 40.0%
CCTCAAACTCAAACGTTGTT+TGG - chr8_1:12875780-12875799 Msa1179460:three_prime_UTR 40.0%
CGGGTGTATAATCTAAGCTA+TGG - chr8_1:12876021-12876040 Msa1179460:CDS 40.0%
!! TCCTTTTGGTTGTGGTCTTA+TGG - chr8_1:12876100-12876119 Msa1179460:CDS 40.0%
TCCATAAGACCACAACCAAA+AGG + chr8_1:12876104-12876123 None:intergenic 40.0%
!!! GATTGGTTTTCCGGATTAGT+CGG + chr8_1:12876181-12876200 None:intergenic 40.0%
AGTCAGAGTAAAGCTCTGTA+TGG - chr8_1:12876230-12876249 Msa1179460:intron 40.0%
TTCAAACCTGAGATGTAGAG+CGG - chr8_1:12876290-12876309 Msa1179460:intron 40.0%
GGTTCATTGCAAATTTGGGT+TGG - chr8_1:12876631-12876650 Msa1179460:intron 40.0%
!! TCATTGCAAATTTGGGTTGG+TGG - chr8_1:12876634-12876653 Msa1179460:intron 40.0%
! GTGTACTCTTTTCTAACTCG+AGG - chr8_1:12876706-12876725 Msa1179460:intron 40.0%
! TACTCTTTTCTAACTCGAGG+TGG - chr8_1:12876709-12876728 Msa1179460:intron 40.0%
CCTGTGAAAAGCAGATGAAT+CGG - chr8_1:12876782-12876801 Msa1179460:intron 40.0%
! CTATTTGTGGCTCTTGTTTC+TGG - chr8_1:12876878-12876897 Msa1179460:intron 40.0%
!!! TCTTTTTGGTTGTGGCCTTA+TGG - chr8_1:12876944-12876963 Msa1179460:intron 40.0%
ATTAGGATCTTTGACCCACT+AGG - chr8_1:12877004-12877023 Msa1179460:intron 40.0%
TTCATGAATTAGCCCCATAG+CGG + chr8_1:12877057-12877076 None:intergenic 40.0%
ATGGGGCTAATTCATGAACT+TGG - chr8_1:12877059-12877078 Msa1179460:intron 40.0%
TAATTCATGAACTTGGCAGC+AGG - chr8_1:12877066-12877085 Msa1179460:intron 40.0%
TGCATTAACTCAGGCAACTT+AGG + chr8_1:12877375-12877394 None:intergenic 40.0%
TGCCTGAGTTAATGCATGTT+TGG - chr8_1:12877379-12877398 Msa1179460:intron 40.0%
TCAAACATGCACTTAGTGTG+AGG - chr8_1:12877515-12877534 Msa1179460:intron 40.0%
GGTTCATTGCAAGTTTGGAT+TGG - chr8_1:12877543-12877562 Msa1179460:intron 40.0%
! TCATTGCAAGTTTGGATTGG+TGG - chr8_1:12877546-12877565 Msa1179460:intron 40.0%
!! CTGATTCATCTGCTTTTCAC+AGG + chr8_1:12877674-12877693 None:intergenic 40.0%
TCTCCAAAAGAGAGAACAAC+TGG - chr8_1:12877715-12877734 Msa1179460:intron 40.0%
!!! GATTGGTTTTCCGGATTAGT+CGG + chr8_1:12876181-12876200 None:intergenic 40.0%
TGTATGGACCGATCAAACAT+AGG - chr8_1:12878044-12878063 Msa1179460:intron 40.0%
TGTACCCCTCTATAGATCTT+AGG + chr8_1:12878097-12878116 None:intergenic 40.0%
ACAAACATCTCAACCATCTG+GGG + chr8_1:12878153-12878172 None:intergenic 40.0%
CCTAATTCTCGAATTAGCAG+CGG - chr8_1:12878250-12878269 Msa1179460:intron 40.0%
! GAGTTGGAGTACTTTCCAAA+TGG - chr8_1:12878297-12878316 Msa1179460:intron 40.0%
CTTGTTAGGAGTTGTCCATT+TGG + chr8_1:12878315-12878334 None:intergenic 40.0%
! ATGACGTTACAAGGCTTGTT+AGG + chr8_1:12878329-12878348 None:intergenic 40.0%
CTCACACTAAGTGCATTTGA+TGG + chr8_1:12878706-12878725 None:intergenic 40.0%
CATCAAATGCACTTAGTGTG+AGG - chr8_1:12878704-12878723 Msa1179460:intron 40.0%
GAGCTTCAACAAAATCGTAG+TGG + chr8_1:12878783-12878802 None:intergenic 40.0%
CACAGGATTTGAGTGCATAT+TGG + chr8_1:12876768-12876787 None:intergenic 40.0%
AAGCTCCAAACATTCTTGAG+AGG - chr8_1:12879102-12879121 Msa1179460:intron 40.0%
AGCTCCAAACATTCTTGAGA+GGG - chr8_1:12879103-12879122 Msa1179460:intron 40.0%
TTAGCCCTCTCAAGAATGTT+TGG + chr8_1:12879110-12879129 None:intergenic 40.0%
AAACATTCTTGAGAGGGCTA+AGG - chr8_1:12879109-12879128 Msa1179460:intron 40.0%
ATAAAATCGCCATGCTACCA+TGG - chr8_1:12879419-12879438 Msa1179460:CDS 40.0%
TTAACCAAACCATGGTAGCA+TGG + chr8_1:12879431-12879450 None:intergenic 40.0%
!! GTGGTCTTATGGAAGAGACA+TGG - chr8_1:12876111-12876130 Msa1179460:CDS 45.0%
!!! TAGACGGTGGATTGGTTTTC+CGG + chr8_1:12876190-12876209 None:intergenic 45.0%
AAGAATTGTCTGCACTTGGC+AGG - chr8_1:12876266-12876285 Msa1179460:intron 45.0%
!! CCGATTCATCTGCTTTTCAC+AGG + chr8_1:12876785-12876804 None:intergenic 45.0%
AATCGGTACAAACTTCCGAC+AGG - chr8_1:12876799-12876818 Msa1179460:intron 45.0%
TCTTTCGGAGATAGACCTGT+CGG + chr8_1:12876817-12876836 None:intergenic 45.0%
!!! TTTTGGTTGTGGCCTTATGG+AGG - chr8_1:12876947-12876966 Msa1179460:intron 45.0%
ATCTCCATGACTCCTCCATA+AGG + chr8_1:12876962-12876981 None:intergenic 45.0%
! GTATACCTAGAGTGCCTAGT+GGG + chr8_1:12877021-12877040 None:intergenic 45.0%
! AGTATACCTAGAGTGCCTAG+TGG + chr8_1:12877022-12877041 None:intergenic 45.0%
TCACAACTTAGGTCCGCTAT+GGG - chr8_1:12877041-12877060 Msa1179460:intron 45.0%
! CAACACGGTGTTAGAAGAGT+TGG + chr8_1:12877151-12877170 None:intergenic 45.0%
CAACTCTTCTAACACCGTGT+TGG - chr8_1:12877149-12877168 Msa1179460:intron 45.0%
TGCACTTAGTGTGAGGTCTT+TGG - chr8_1:12877522-12877541 Msa1179460:intron 45.0%
!! GTGGTCTTATGTAGGAGACA+TGG - chr8_1:12877910-12877929 Msa1179460:intron 45.0%
!! TTTCCGGATTAGTCGGTCTT+AGG + chr8_1:12877972-12877991 None:intergenic 45.0%
TCAATTGAGCCTACCACTAC+TGG + chr8_1:12878008-12878027 None:intergenic 45.0%
AGTCGTAGCAAAGCTCTGTA+TGG - chr8_1:12878028-12878047 Msa1179460:intron 45.0%
TTGATCCAAGCAGACGATTC+AGG - chr8_1:12878199-12878218 Msa1179460:intron 45.0%
GTATACCTGAATCGTCTGCT+TGG + chr8_1:12878207-12878226 None:intergenic 45.0%
CCGCTGCTAATTCGAGAATT+AGG + chr8_1:12878253-12878272 None:intergenic 45.0%
GTTGGCAACATGACGTTACA+AGG + chr8_1:12878338-12878357 None:intergenic 45.0%
!! AGGATTGGTCTAGTGCTTAG+AGG + chr8_1:12878479-12878498 None:intergenic 45.0%
TGCACTTAGTGTGAGGTCTT+TGG - chr8_1:12877522-12877541 Msa1179460:intron 45.0%
CTGATTCATCTGCTTGTCAC+AGG + chr8_1:12878856-12878875 None:intergenic 45.0%
AATCAGTACTAACTCCCGAC+AGG - chr8_1:12878870-12878889 Msa1179460:intron 45.0%
TCTTTCGGAGATAGACCTGT+CGG + chr8_1:12876817-12876836 None:intergenic 45.0%
TCTCCGAAAGAGAGAACATG+TGG - chr8_1:12878897-12878916 Msa1179460:intron 45.0%
TGAGTTTCTTTGTCATGGCG+AGG + chr8_1:12879170-12879189 None:intergenic 45.0%
CGCCATGACAAAGAAACTCA+TGG - chr8_1:12879170-12879189 Msa1179460:intron 45.0%
GTTGAAGAAGTCAAAGCTCC+CGG - chr8_1:12879224-12879243 Msa1179460:intron 45.0%
TTCACCCTTTCAAACACACC+GGG + chr8_1:12879245-12879264 None:intergenic 45.0%
CTTCACCCTTTCAAACACAC+CGG + chr8_1:12879246-12879265 None:intergenic 45.0%
GAAGCTCAATATCCGGTCCT+TGG - chr8_1:12876154-12876173 Msa1179460:intron 50.0%
!! TTTCCGGATTAGTCGGTCCA+AGG + chr8_1:12876174-12876193 None:intergenic 50.0%
ACCAATCCACCGTCTACTAG+CGG - chr8_1:12876194-12876213 Msa1179460:intron 50.0%
TTGAACCTCCCGCTAGTAGA+CGG + chr8_1:12876206-12876225 None:intergenic 50.0%
TTTGACCCACTAGGCACTCT+AGG - chr8_1:12877013-12877032 Msa1179460:intron 50.0%
CTCACAACTTAGGTCCGCTA+TGG - chr8_1:12877040-12877059 Msa1179460:intron 50.0%
CACAACTTAGGTCCGCTATG+GGG - chr8_1:12877042-12877061 Msa1179460:intron 50.0%
ATCAGGGTTGGACTCCTAAC+AGG - chr8_1:12877108-12877127 Msa1179460:intron 50.0%
CGTGACTTTCCAAGCCTGTT+AGG + chr8_1:12877125-12877144 None:intergenic 50.0%
!! CTTTTGGAGATAGGCCTGTC+AGG + chr8_1:12877705-12877724 None:intergenic 50.0%
!! GGATTAGTCGGTCTTAGGAC+CGG + chr8_1:12877967-12877986 None:intergenic 50.0%
GGTCCTAAGACCGACTAATC+CGG - chr8_1:12877966-12877985 Msa1179460:intron 50.0%
!!! TGGACGGTGGATTGGTTTTC+CGG + chr8_1:12877988-12878007 None:intergenic 50.0%
TTGAGCCTACCACTACTGGA+CGG + chr8_1:12878004-12878023 None:intergenic 50.0%
! CTATAGAGGGGTACACTCCT+AGG - chr8_1:12878102-12878121 Msa1179460:intron 50.0%
! ACATCTCAACCATCTGGGGT+TGG + chr8_1:12878149-12878168 None:intergenic 50.0%
CTTTCGGAGATAGACCTGTC+GGG + chr8_1:12876816-12876835 None:intergenic 50.0%
CATTCTTGAGAGGGCTAAGG+AGG - chr8_1:12879112-12879131 Msa1179460:intron 50.0%
AAGCTCCCGGTGTGTTTGAA+AGG - chr8_1:12879237-12879256 Msa1179460:intron 50.0%
AGCTCCCGGTGTGTTTGAAA+GGG - chr8_1:12879238-12879257 Msa1179460:intron 50.0%
CGGTGTGTTTGAAAGGGTGA+AGG - chr8_1:12879244-12879263 Msa1179460:intron 50.0%
ATCGCCATGCTACCATGGTT+TGG - chr8_1:12879424-12879443 Msa1179460:exon 50.0%
!! GGATTAGTCGGTCCAAGGAC+CGG + chr8_1:12876169-12876188 None:intergenic 55.0%
GGTCCTTGGACCGACTAATC+CGG - chr8_1:12876168-12876187 Msa1179460:intron 55.0%
CCAATCCACCGTCTACTAGC+GGG - chr8_1:12876195-12876214 Msa1179460:intron 55.0%
TGTGCTCCGCTCTACATCTC+AGG + chr8_1:12876299-12876318 None:intergenic 55.0%
GTAGAGCGGAGCACACTCTT+AGG - chr8_1:12876304-12876323 Msa1179460:intron 55.0%
!! GTGGCCTTATGGAGGAGTCA+TGG - chr8_1:12876955-12876974 Msa1179460:intron 55.0%
GGTTGGACTCCTAACAGGCT+TGG - chr8_1:12877113-12877132 Msa1179460:intron 55.0%
!! GATTGGTCTCGTGCTGAGAG+AGG + chr8_1:12877279-12877298 None:intergenic 55.0%
ACCAATCCACCGTCCAGTAG+TGG - chr8_1:12877992-12878011 Msa1179460:intron 55.0%
ACCACTACTGGACGGTGGAT+TGG + chr8_1:12877996-12878015 None:intergenic 55.0%
ATCCACCGTCCAGTAGTGGT+AGG - chr8_1:12877996-12878015 Msa1179460:intron 55.0%
GAGGTGAAGGCTTAGGACCT+AGG + chr8_1:12878122-12878141 None:intergenic 55.0%
CCCGCTAGTAGACGGTGGAT+TGG + chr8_1:12876198-12876217 None:intergenic 60.0%
ATCCACCGTCTACTAGCGGG+AGG - chr8_1:12876198-12876217 Msa1179460:intron 60.0%
AACCTCCCGCTAGTAGACGG+TGG + chr8_1:12876203-12876222 None:intergenic 60.0%
AGCCTACCACTACTGGACGG+TGG + chr8_1:12878001-12878020 None:intergenic 60.0%
GGTCCTAAGCCTTCACCTCC+AGG - chr8_1:12878123-12878142 Msa1179460:intron 60.0%
TGGCCTGGAGGTGAAGGCTT+AGG + chr8_1:12878129-12878148 None:intergenic 60.0%
!! TCAACCATCTGGGGTTGGCC+TGG + chr8_1:12878144-12878163 None:intergenic 60.0%
GAGGGCTAAGGAGGAGACTG+AGG - chr8_1:12879121-12879140 Msa1179460:intron 60.0%
!! TGGGGTTGGCCTGGAGGTGA+AGG + chr8_1:12878135-12878154 None:intergenic 65.0%
ACCTCCAGGCCAACCCCAGA+TGG - chr8_1:12878137-12878156 Msa1179460:intron 65.0%
!! ACCATCTGGGGTTGGCCTGG+AGG + chr8_1:12878141-12878160 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 12875663 12879589 12875663 ID=Msa1179460;Name=Msa1179460
chr8_1 mRNA 12875663 12879589 12875663 ID=Msa1179460-mRNA-1;Parent=Msa1179460;Name=Msa1179460-mRNA-1;_AED=0.02;_eAED=0.02;_QI=149|1|1|1|1|1|2|294|81
chr8_1 exon 12875663 12876162 12875663 ID=Msa1179460-mRNA-1:exon:4610;Parent=Msa1179460-mRNA-1
chr8_1 exon 12879401 12879589 12879401 ID=Msa1179460-mRNA-1:exon:4609;Parent=Msa1179460-mRNA-1
chr8_1 five_prime_UTR 12879441 12879589 12879441 ID=Msa1179460-mRNA-1:five_prime_utr;Parent=Msa1179460-mRNA-1
chr8_1 CDS 12879401 12879440 12879401 ID=Msa1179460-mRNA-1:cds;Parent=Msa1179460-mRNA-1
chr8_1 CDS 12875957 12876162 12875957 ID=Msa1179460-mRNA-1:cds;Parent=Msa1179460-mRNA-1
chr8_1 three_prime_UTR 12875663 12875956 12875663 ID=Msa1179460-mRNA-1:three_prime_utr;Parent=Msa1179460-mRNA-1
Gene Sequence

>Msa1179460

ATGGCAGAAAAGGAACCCAAACTTAATGATTCGGTTTCAGAAAAAGATGTGAAAGCTCCAAACATTCTTGAGAGGGCTAAGGAGGAGACTGAGGCAGTTTTTCATCATGACAAATCGCCTCGCCATGACAAAGAAACTCATGGAAGGAATGATGACATTGATGAGGGAACTTCTGTTGAAGAAGTCAAAGCTCCCGGTGTGTTTGAAAGGGTGAAGGAAGAGCTTGAAGCTGTAGTTATTAGCTAG

Protein sequence

>Msa1179460

MAEKEPKLNDSVSEKDVKAPNILERAKEETEAVFHHDKSPRHDKETHGRNDDIDEGTSVEEVKAPGVFERVKEELEAVVIS*