Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004880 | Msa0858840 | 0.810140 | 1.336628e-50 | -8.615850e-47 |
| Msa0017510 | Msa0858840 | 0.867081 | 1.780331e-65 | -8.615850e-47 |
| Msa0028640 | Msa0858840 | 0.813128 | 2.994468e-51 | -8.615850e-47 |
| Msa0040450 | Msa0858840 | 0.804446 | 2.151838e-49 | -8.615850e-47 |
| Msa0051790 | Msa0858840 | 0.802270 | 6.075326e-49 | -8.615850e-47 |
| Msa0072370 | Msa0858840 | 0.806441 | 8.213129e-50 | -8.615850e-47 |
| Msa0076250 | Msa0858840 | 0.806865 | 6.682959e-50 | -8.615850e-47 |
| Msa0078650 | Msa0858840 | 0.803726 | 3.037852e-49 | -8.615850e-47 |
| Msa0089630 | Msa0858840 | 0.812834 | 3.472533e-51 | -8.615850e-47 |
| Msa0110970 | Msa0858840 | 0.836625 | 8.386550e-57 | -8.615850e-47 |
| Msa0112750 | Msa0858840 | 0.850626 | 1.503799e-60 | -8.615850e-47 |
| Msa0611380 | Msa0858840 | 0.806858 | 6.706967e-50 | -8.615850e-47 |
| Msa0625720 | Msa0858840 | 0.805917 | 1.059096e-49 | -8.615850e-47 |
| Msa0631120 | Msa0858840 | 0.834510 | 2.875036e-56 | -8.615850e-47 |
| Msa0639430 | Msa0858840 | 0.813593 | 2.366811e-51 | -8.615850e-47 |
| Msa0641360 | Msa0858840 | 0.813048 | 3.117553e-51 | -8.615850e-47 |
| Msa0657970 | Msa0858840 | 0.856904 | 2.347107e-62 | -8.615850e-47 |
| Msa0663390 | Msa0858840 | 0.804345 | 2.258327e-49 | -8.615850e-47 |
| Msa0666030 | Msa0858840 | 0.806258 | 8.978815e-50 | -8.615850e-47 |
| Msa0669340 | Msa0858840 | 0.819071 | 1.407849e-52 | -8.615850e-47 |
| Msa0682330 | Msa0858840 | 0.815805 | 7.657034e-52 | -8.615850e-47 |
| Msa0682550 | Msa0858840 | 0.819284 | 1.259326e-52 | -8.615850e-47 |
| Msa0693380 | Msa0858840 | 0.810257 | 1.261342e-50 | -8.615850e-47 |
| Msa0696640 | Msa0858840 | 0.811065 | 8.436155e-51 | -8.615850e-47 |
| Msa0708520 | Msa0858840 | 0.817872 | 2.631619e-52 | -8.615850e-47 |
| Msa0716450 | Msa0858840 | 0.802249 | 6.135978e-49 | -8.615850e-47 |
| Msa0717260 | Msa0858840 | 0.806832 | 6.793439e-50 | -8.615850e-47 |
| Msa0736000 | Msa0858840 | 0.800545 | 1.370944e-48 | -8.615850e-47 |
| Msa0738520 | Msa0858840 | 0.805903 | 1.066354e-49 | -8.615850e-47 |
| Msa0777850 | Msa0858840 | 0.806658 | 7.391900e-50 | -8.615850e-47 |
| Msa0785250 | Msa0858840 | 0.802667 | 5.033309e-49 | -8.615850e-47 |
| Msa0801760 | Msa0858840 | 0.822617 | 2.152494e-53 | -8.615850e-47 |
| Msa0803890 | Msa0858840 | 0.803623 | 3.191179e-49 | -8.615850e-47 |
| Msa0824660 | Msa0858840 | 0.818902 | 1.538115e-52 | -8.615850e-47 |
| Msa0828560 | Msa0858840 | 0.816503 | 5.346860e-52 | -8.615850e-47 |
| Msa0130570 | Msa0858840 | 0.815758 | 7.845734e-52 | -8.615850e-47 |
| Msa0140780 | Msa0858840 | 0.833687 | 4.622406e-56 | -8.615850e-47 |
| Msa0152430 | Msa0858840 | 0.810204 | 1.294523e-50 | -8.615850e-47 |
| Msa0153420 | Msa0858840 | 0.813831 | 2.097492e-51 | -8.615850e-47 |
| Msa0157290 | Msa0858840 | 0.866145 | 3.532271e-65 | -8.615850e-47 |
| Msa0163980 | Msa0858840 | 0.814512 | 1.483385e-51 | -8.615850e-47 |
| Msa0173990 | Msa0858840 | 0.824065 | 9.879124e-54 | -8.615850e-47 |
| Msa0191040 | Msa0858840 | 0.841948 | 3.486328e-58 | -8.615850e-47 |
| Msa0191250 | Msa0858840 | 0.808408 | 3.142473e-50 | -8.615850e-47 |
| Msa0197930 | Msa0858840 | 0.821066 | 4.918179e-53 | -8.615850e-47 |
| Msa0200260 | Msa0858840 | 0.821517 | 3.871887e-53 | -8.615850e-47 |
| Msa0202950 | Msa0858840 | 0.816604 | 5.077007e-52 | -8.615850e-47 |
| Msa0203030 | Msa0858840 | 0.809155 | 2.175492e-50 | -8.615850e-47 |
| Msa0206800 | Msa0858840 | 0.801995 | 6.921083e-49 | -8.615850e-47 |
| Msa0220290 | Msa0858840 | -0.804446 | 2.152260e-49 | -8.615850e-47 |
| Msa0220300 | Msa0858840 | 0.803545 | 3.311942e-49 | -8.615850e-47 |
| Msa0225600 | Msa0858840 | 0.804599 | 1.999865e-49 | -8.615850e-47 |
| Msa0227470 | Msa0858840 | 0.804454 | 2.143965e-49 | -8.615850e-47 |
| Msa0230740 | Msa0858840 | 0.800605 | 1.332814e-48 | -8.615850e-47 |
| Msa0233340 | Msa0858840 | 0.841723 | 3.996999e-58 | -8.615850e-47 |
| Msa0366240 | Msa0858840 | 0.807959 | 3.916717e-50 | -8.615850e-47 |
| Msa0392420 | Msa0858840 | 0.804669 | 1.933369e-49 | -8.615850e-47 |
| Msa0398710 | Msa0858840 | 0.802868 | 4.574283e-49 | -8.615850e-47 |
| Msa0407780 | Msa0858840 | 0.809798 | 1.583430e-50 | -8.615850e-47 |
| Msa0407880 | Msa0858840 | 0.809622 | 1.727756e-50 | -8.615850e-47 |
| Msa0407900 | Msa0858840 | 0.807664 | 4.526387e-50 | -8.615850e-47 |
| Msa0407910 | Msa0858840 | 0.828472 | 8.819522e-55 | -8.615850e-47 |
| Msa0407920 | Msa0858840 | 0.830517 | 2.809067e-55 | -8.615850e-47 |
| Msa0410650 | Msa0858840 | 0.830391 | 3.015971e-55 | -8.615850e-47 |
| Msa0417880 | Msa0858840 | 0.802949 | 4.401502e-49 | -8.615850e-47 |
| Msa0419820 | Msa0858840 | 0.819289 | 1.255657e-52 | -8.615850e-47 |
| Msa0426360 | Msa0858840 | 0.811492 | 6.812894e-51 | -8.615850e-47 |
| Msa0426400 | Msa0858840 | 0.812618 | 3.871437e-51 | -8.615850e-47 |
| Msa0461720 | Msa0858840 | 0.804365 | 2.237452e-49 | -8.615850e-47 |
| Msa0480980 | Msa0858840 | 0.801270 | 9.746579e-49 | -8.615850e-47 |
| Msa0243100 | Msa0858840 | 0.847557 | 1.072518e-59 | -8.615850e-47 |
| Msa0244860 | Msa0858840 | 0.827473 | 1.534420e-54 | -8.615850e-47 |
| Msa0261340 | Msa0858840 | 0.842688 | 2.219062e-58 | -8.615850e-47 |
| Msa0264150 | Msa0858840 | 0.813358 | 2.664823e-51 | -8.615850e-47 |
| Msa0274360 | Msa0858840 | 0.802563 | 5.286221e-49 | -8.615850e-47 |
| Msa0283450 | Msa0858840 | 0.824749 | 6.817920e-54 | -8.615850e-47 |
| Msa0283520 | Msa0858840 | 0.829626 | 4.633515e-55 | -8.615850e-47 |
| Msa0284420 | Msa0858840 | 0.821053 | 4.953094e-53 | -8.615850e-47 |
| Msa0287650 | Msa0858840 | 0.845700 | 3.448801e-59 | -8.615850e-47 |
| Msa0306300 | Msa0858840 | 0.804958 | 1.682356e-49 | -8.615850e-47 |
| Msa0311690 | Msa0858840 | 0.832233 | 1.062697e-55 | -8.615850e-47 |
| Msa0322860 | Msa0858840 | 0.815280 | 1.002597e-51 | -8.615850e-47 |
| Msa0326540 | Msa0858840 | 0.801365 | 9.319461e-49 | -8.615850e-47 |
| Msa0332000 | Msa0858840 | 0.833284 | 5.825373e-56 | -8.615850e-47 |
| Msa0333930 | Msa0858840 | 0.806670 | 7.350379e-50 | -8.615850e-47 |
| Msa0334500 | Msa0858840 | 0.813097 | 3.041797e-51 | -8.615850e-47 |
| Msa0483860 | Msa0858840 | 0.801333 | 9.462330e-49 | -8.615850e-47 |
| Msa0484780 | Msa0858840 | 0.828330 | 9.543441e-55 | -8.615850e-47 |
| Msa0487570 | Msa0858840 | 0.810052 | 1.396370e-50 | -8.615850e-47 |
| Msa0487630 | Msa0858840 | 0.803070 | 4.153883e-49 | -8.615850e-47 |
| Msa0498060 | Msa0858840 | 0.811703 | 6.131110e-51 | -8.615850e-47 |
| Msa0503580 | Msa0858840 | 0.824252 | 8.928725e-54 | -8.615850e-47 |
| Msa0507680 | Msa0858840 | 0.828080 | 1.096640e-54 | -8.615850e-47 |
| Msa0509610 | Msa0858840 | 0.818166 | 2.259178e-52 | -8.615850e-47 |
| Msa0512900 | Msa0858840 | 0.839926 | 1.182578e-57 | -8.615850e-47 |
| Msa0514030 | Msa0858840 | 0.808388 | 3.173546e-50 | -8.615850e-47 |
| Msa0520510 | Msa0858840 | 0.815298 | 9.930585e-52 | -8.615850e-47 |
| Msa0527790 | Msa0858840 | 0.824423 | 8.139484e-54 | -8.615850e-47 |
| Msa0529890 | Msa0858840 | 0.803925 | 2.762771e-49 | -8.615850e-47 |
| Msa0531430 | Msa0858840 | 0.828741 | 7.596234e-55 | -8.615850e-47 |
| Msa0533070 | Msa0858840 | 0.805812 | 1.114324e-49 | -8.615850e-47 |
| Msa0534590 | Msa0858840 | 0.840071 | 1.084303e-57 | -8.615850e-47 |
| Msa0546680 | Msa0858840 | 0.811335 | 7.369788e-51 | -8.615850e-47 |
| Msa0571140 | Msa0858840 | 0.813762 | 2.172552e-51 | -8.615850e-47 |
| Msa0574890 | Msa0858840 | 0.803141 | 4.015881e-49 | -8.615850e-47 |
| Msa0581760 | Msa0858840 | 0.801341 | 9.424290e-49 | -8.615850e-47 |
| Msa0585560 | Msa0858840 | 0.804417 | 2.182052e-49 | -8.615850e-47 |
| Msa0590800 | Msa0858840 | 0.824297 | 8.712001e-54 | -8.615850e-47 |
| Msa0601850 | Msa0858840 | 0.800609 | 1.330321e-48 | -8.615850e-47 |
| Msa0602240 | Msa0858840 | 0.805172 | 1.517462e-49 | -8.615850e-47 |
| Msa0602250 | Msa0858840 | 0.806254 | 8.993686e-50 | -8.615850e-47 |
| Msa0858830 | Msa0858840 | 0.817829 | 2.691202e-52 | -8.615850e-47 |
| Msa0858840 | Msa0867890 | 0.817262 | 3.613360e-52 | -8.615850e-47 |
| Msa0858840 | Msa0869450 | 0.805972 | 1.031173e-49 | -8.615850e-47 |
| Msa0858840 | Msa0880140 | 0.867520 | 1.288047e-65 | -8.615850e-47 |
| Msa0858840 | Msa0885060 | 0.806659 | 7.389981e-50 | -8.615850e-47 |
| Msa0858840 | Msa0893950 | 0.800517 | 1.388557e-48 | -8.615850e-47 |
| Msa0858840 | Msa0896750 | 0.807329 | 5.330654e-50 | -8.615850e-47 |
| Msa0858840 | Msa0906200 | 0.813783 | 2.149428e-51 | -8.615850e-47 |
| Msa0858840 | Msa0908050 | 0.804216 | 2.402480e-49 | -8.615850e-47 |
| Msa0858840 | Msa0909120 | 0.834190 | 3.459569e-56 | -8.615850e-47 |
| Msa0858840 | Msa0922410 | 0.815621 | 8.416561e-52 | -8.615850e-47 |
| Msa0858840 | Msa0975340 | 0.803907 | 2.785591e-49 | -8.615850e-47 |
| Msa0858840 | Msa0979510 | 0.800461 | 1.425629e-48 | -8.615850e-47 |
| Msa0858840 | Msa0999340 | 0.804782 | 1.830947e-49 | -8.615850e-47 |
| Msa0858840 | Msa0999360 | 0.819669 | 1.028850e-52 | -8.615850e-47 |
| Msa0858840 | Msa0999410 | 0.809785 | 1.593726e-50 | -8.615850e-47 |
| Msa0858840 | Msa1003750 | 0.807005 | 6.242343e-50 | -8.615850e-47 |
| Msa0858840 | Msa1007270 | 0.810182 | 1.308933e-50 | -8.615850e-47 |
| Msa0858840 | Msa1010110 | 0.826607 | 2.472828e-54 | -8.615850e-47 |
| Msa0858840 | Msa1013400 | 0.804615 | 1.983897e-49 | -8.615850e-47 |
| Msa0858840 | Msa1014540 | 0.812019 | 5.233440e-51 | -8.615850e-47 |
| Msa0858840 | Msa1031930 | 0.802814 | 4.692143e-49 | -8.615850e-47 |
| Msa0858840 | Msa1069100 | 0.806112 | 9.635469e-50 | -8.615850e-47 |
| Msa0858840 | Msa1079590 | 0.814569 | 1.441274e-51 | -8.615850e-47 |
| Msa0858840 | Msa1082500 | 0.836035 | 1.184411e-56 | -8.615850e-47 |
| Msa0858840 | Msa1084240 | 0.808513 | 2.985676e-50 | -8.615850e-47 |
| Msa0858840 | Msa1085200 | 0.826771 | 2.259843e-54 | -8.615850e-47 |
| Msa0858840 | Msa1085300 | 0.819010 | 1.453342e-52 | -8.615850e-47 |
| Msa0858840 | Msa1098560 | 0.806773 | 6.988296e-50 | -8.615850e-47 |
| Msa0858840 | Msa1108160 | 0.806318 | 8.717333e-50 | -8.615850e-47 |
| Msa0858840 | Msa1123380 | 0.803446 | 3.472183e-49 | -8.615850e-47 |
| Msa0858840 | Msa1151910 | 0.818848 | 1.582478e-52 | -8.615850e-47 |
| Msa0858840 | Msa1162040 | 0.800080 | 1.704551e-48 | -8.615850e-47 |
| Msa0858840 | Msa1168160 | 0.802693 | 4.969262e-49 | -8.615850e-47 |
| Msa0858840 | Msa1169090 | 0.806315 | 8.731417e-50 | -8.615850e-47 |
| Msa0858840 | Msa1170730 | 0.814694 | 1.351872e-51 | -8.615850e-47 |
| Msa0858840 | Msa1172450 | 0.815330 | 9.768328e-52 | -8.615850e-47 |
| Msa0858840 | Msa1172670 | 0.825786 | 3.877535e-54 | -8.615850e-47 |
| Msa0858840 | Msa1179460 | 0.816002 | 6.919808e-52 | -8.615850e-47 |
| Msa0858840 | Msa1193290 | 0.819312 | 1.240487e-52 | -8.615850e-47 |
| Msa0858840 | Msa1214890 | 0.809190 | 2.138998e-50 | -8.615850e-47 |
| Msa0858840 | Msa1228210 | 0.807336 | 5.312333e-50 | -8.615850e-47 |
| Msa0858840 | Msa1238470 | 0.809801 | 1.580876e-50 | -8.615850e-47 |
| Msa0858840 | Msa1238930 | 0.806720 | 7.172692e-50 | -8.615850e-47 |
| Msa0858840 | Msa1242230 | 0.805648 | 1.206321e-49 | -8.615850e-47 |
| Msa0858840 | Msa1271260 | 0.807630 | 4.602325e-50 | -8.615850e-47 |
| Msa0858840 | Msa1271280 | 0.802543 | 5.337866e-49 | -8.615850e-47 |
| Msa0858840 | Msa1271290 | 0.834125 | 3.590936e-56 | -8.615850e-47 |
| Msa0858840 | Msa1271300 | 0.813892 | 2.033773e-51 | -8.615850e-47 |
| Msa0858840 | Msa1283860 | 0.843061 | 1.765841e-58 | -8.615850e-47 |
| Msa0858840 | Msa1289280 | 0.821415 | 4.087504e-53 | -8.615850e-47 |
| Msa0858840 | Msa1303250 | 0.812369 | 4.388284e-51 | -8.615850e-47 |
| Msa0858840 | Msa1308380 | 0.828315 | 9.627091e-55 | -8.615850e-47 |
| Msa0858840 | Msa1320410 | 0.822701 | 2.057322e-53 | -8.615850e-47 |
| Msa0858840 | Msa1321030 | 0.810094 | 1.367355e-50 | -8.615850e-47 |
| Msa0858840 | Msa1322860 | 0.805804 | 1.118546e-49 | -8.615850e-47 |
| Msa0858840 | Msa1322890 | 0.801677 | 8.043203e-49 | -8.615850e-47 |
| Msa0858840 | Msa1324550 | 0.803403 | 3.544525e-49 | -8.615850e-47 |
| Msa0858840 | Msa1324780 | 0.806872 | 6.660200e-50 | -8.615850e-47 |
| Msa0858840 | Msa1331910 | 0.804479 | 2.118010e-49 | -8.615850e-47 |
| Msa0858840 | Msa1346370 | 0.802529 | 5.372962e-49 | -8.615850e-47 |
| Msa0858840 | Msa1374550 | 0.824831 | 6.522229e-54 | -8.615850e-47 |
| Msa0858840 | Msa1378760 | 0.806308 | 8.761800e-50 | -8.615850e-47 |
| Msa0858840 | Msa1397250 | 0.813739 | 2.197184e-51 | -8.615850e-47 |
| Msa0858840 | Msa1409870 | 0.826993 | 1.999847e-54 | -8.615850e-47 |
| Msa0858840 | Msa1438250 | 0.852867 | 3.483303e-61 | -8.615850e-47 |
| Msa0858840 | Msa1452120 | 0.812174 | 4.841403e-51 | -8.615850e-47 |
| Msa0858840 | Msa1460020 | 0.802348 | 5.855408e-49 | -8.615850e-47 |
| Msa0858840 | Msa1460240 | 0.817762 | 2.787414e-52 | -8.615850e-47 |
| Msa0858840 | Msa1463670 | 0.808421 | 3.122963e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 25 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCCTCATTTCATAATCT+TGG | 0.259074 | 5_4:+56695865 | None:intergenic |
| CATTCTTTGAAGAAGCAAAA+TGG | 0.312978 | 5_4:+56695321 | None:intergenic |
| TTCAAATGCTCCTCTGCCTT+TGG | 0.317129 | 5_4:-56695362 | Msa0858840:CDS |
| AAAACTAACAATTTGTTAGT+TGG | 0.351135 | 5_4:+56695996 | None:intergenic |
| CCTTTCTTGCAAGAAATACT+TGG | 0.363433 | 5_4:+56695799 | None:intergenic |
| TGTTGTGTCCTTATCAAGAT+TGG | 0.368222 | 5_4:-56696103 | None:intergenic |
| AAATACTTGGTCCGACATAT+TGG | 0.368493 | 5_4:+56695812 | None:intergenic |
| AAGCAAAATGGTTTGCTTCT+CGG | 0.368539 | 5_4:+56695333 | None:intergenic |
| CCAAGTATTTCTTGCAAGAA+AGG | 0.377212 | 5_4:-56695799 | Msa0858840:CDS |
| CCTCATTTCATAATCTTGGT+TGG | 0.436906 | 5_4:+56695869 | None:intergenic |
| TCTTCCTCATGAGTCATTGA+AGG | 0.474531 | 5_4:+56695744 | None:intergenic |
| TGGTGGTGGAGAAGAGATAT+AGG | 0.485148 | 5_4:+56696049 | None:intergenic |
| ATGTGCAAGAATATATATAG+AGG | 0.485343 | 5_4:+56695946 | None:intergenic |
| TAGTGGATCCAATCTTGATA+AGG | 0.509800 | 5_4:+56696095 | None:intergenic |
| TTGATTGGGTGCGATGGTGG+TGG | 0.514450 | 5_4:+56696035 | None:intergenic |
| TTCAATGACTCATGAGGAAG+AGG | 0.520203 | 5_4:-56695742 | Msa0858840:intron |
| CACAATGATTTCATCAGTAG+TGG | 0.524252 | 5_4:+56696078 | None:intergenic |
| ATTTCTTGCAAGAAAGGCAA+AGG | 0.564591 | 5_4:-56695793 | Msa0858840:CDS |
| CCAACCAAGATTATGAAATG+AGG | 0.575459 | 5_4:-56695869 | Msa0858840:exon |
| TGATCCTTCAATGACTCATG+AGG | 0.582376 | 5_4:-56695748 | Msa0858840:CDS |
| TGCTTCTCGGAATGTTCCAA+AGG | 0.583114 | 5_4:+56695346 | None:intergenic |
| TCGGAATGTTCCAAAGGCAG+AGG | 0.588258 | 5_4:+56695352 | None:intergenic |
| ATATACTCTAACCAATATGT+CGG | 0.607580 | 5_4:-56695823 | Msa0858840:CDS |
| TTGCAAGAAAGGCAAAGGTG+TGG | 0.616875 | 5_4:-56695788 | Msa0858840:CDS |
| ATGCACGACAGTGAGCACTG+AGG | 0.825154 | 5_4:+56695387 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGATTTGAATTTTGATT+GGG | + | chr5_4:56695395-56695414 | None:intergenic | 15.0% |
| !! | ATTAAAAAAAGAAAAAGAAG+TGG | + | chr5_4:56695512-56695531 | None:intergenic | 15.0% |
| !!! | TTTGAAAATTTTTAAGTTGA+GGG | - | chr5_4:56695821-56695840 | Msa0858840:CDS | 15.0% |
| !!! | ATTTGATTTGAATTTTGATT+GGG | + | chr5_4:56695395-56695414 | None:intergenic | 15.0% |
| !! | ATTAAAAAAAGAAAAAGAAG+TGG | + | chr5_4:56695512-56695531 | None:intergenic | 15.0% |
| !!! | TTTGAAAATTTTTAAGTTGA+GGG | - | chr5_4:56695821-56695840 | Msa0858840:CDS | 15.0% |
| !!! | GATTTGATTTGAATTTTGAT+TGG | + | chr5_4:56695396-56695415 | None:intergenic | 20.0% |
| !!! | AAAACTAACAATTTGTTAGT+TGG | + | chr5_4:56695420-56695439 | None:intergenic | 20.0% |
| !!! | CTTTGAAAATTTTTAAGTTG+AGG | - | chr5_4:56695820-56695839 | Msa0858840:CDS | 20.0% |
| !! | AATAATAAATACCTGAAACA+AGG | + | chr5_4:56695970-56695989 | None:intergenic | 20.0% |
| !! | TTATTATTAAATTCGTCTGA+AGG | - | chr5_4:56695982-56696001 | Msa0858840:five_prime_UTR | 20.0% |
| !!! | GATTTGATTTGAATTTTGAT+TGG | + | chr5_4:56695396-56695415 | None:intergenic | 20.0% |
| !!! | AAAACTAACAATTTGTTAGT+TGG | + | chr5_4:56695420-56695439 | None:intergenic | 20.0% |
| !!! | CTTTGAAAATTTTTAAGTTG+AGG | - | chr5_4:56695820-56695839 | Msa0858840:CDS | 20.0% |
| !! | AATAATAAATACCTGAAACA+AGG | + | chr5_4:56695970-56695989 | None:intergenic | 20.0% |
| !! | TTATTATTAAATTCGTCTGA+AGG | - | chr5_4:56695982-56696001 | Msa0858840:five_prime_UTR | 20.0% |
| ! | ATGTGCAAGAATATATATAG+AGG | + | chr5_4:56695470-56695489 | None:intergenic | 25.0% |
| ! | ATATACTCTAACCAATATGT+CGG | - | chr5_4:56695590-56695609 | Msa0858840:intron | 25.0% |
| ! | ATGTGCAAGAATATATATAG+AGG | + | chr5_4:56695470-56695489 | None:intergenic | 25.0% |
| ! | ATATACTCTAACCAATATGT+CGG | - | chr5_4:56695590-56695609 | Msa0858840:intron | 25.0% |
| TCTTCCTCATTTCATAATCT+TGG | + | chr5_4:56695551-56695570 | None:intergenic | 30.0% | |
| TCTATTCTCATTATGTTGCT+TGG | - | chr5_4:56695705-56695724 | Msa0858840:intron | 30.0% | |
| !!! | ATTAGTCTTTTGTCTTCCAA+GGG | - | chr5_4:56695867-56695886 | Msa0858840:exon | 30.0% |
| TTGATAAGATGACGAACTAA+TGG | + | chr5_4:56695942-56695961 | None:intergenic | 30.0% | |
| !!! | TATCAATTTTGCCTTGTTTC+AGG | - | chr5_4:56695956-56695975 | Msa0858840:five_prime_UTR | 30.0% |
| ! | CATTCTTTGAAGAAGCAAAA+TGG | + | chr5_4:56696095-56696114 | None:intergenic | 30.0% |
| TCTTCCTCATTTCATAATCT+TGG | + | chr5_4:56695551-56695570 | None:intergenic | 30.0% | |
| TCTATTCTCATTATGTTGCT+TGG | - | chr5_4:56695705-56695724 | Msa0858840:intron | 30.0% | |
| !!! | ATTAGTCTTTTGTCTTCCAA+GGG | - | chr5_4:56695867-56695886 | Msa0858840:exon | 30.0% |
| TTGATAAGATGACGAACTAA+TGG | + | chr5_4:56695942-56695961 | None:intergenic | 30.0% | |
| !!! | TATCAATTTTGCCTTGTTTC+AGG | - | chr5_4:56695956-56695975 | Msa0858840:five_prime_UTR | 30.0% |
| ! | CATTCTTTGAAGAAGCAAAA+TGG | + | chr5_4:56696095-56696114 | None:intergenic | 30.0% |
| ! | TAGTGGATCCAATCTTGATA+AGG | + | chr5_4:56695321-56695340 | None:intergenic | 35.0% |
| CACAATGATTTCATCAGTAG+TGG | + | chr5_4:56695338-56695357 | None:intergenic | 35.0% | |
| CCTCATTTCATAATCTTGGT+TGG | + | chr5_4:56695547-56695566 | None:intergenic | 35.0% | |
| CCAACCAAGATTATGAAATG+AGG | - | chr5_4:56695544-56695563 | Msa0858840:intron | 35.0% | |
| AAATACTTGGTCCGACATAT+TGG | + | chr5_4:56695604-56695623 | None:intergenic | 35.0% | |
| CCTTTCTTGCAAGAAATACT+TGG | + | chr5_4:56695617-56695636 | None:intergenic | 35.0% | |
| CCAAGTATTTCTTGCAAGAA+AGG | - | chr5_4:56695614-56695633 | Msa0858840:intron | 35.0% | |
| ATTTCTTGCAAGAAAGGCAA+AGG | - | chr5_4:56695620-56695639 | Msa0858840:intron | 35.0% | |
| !!! | TAAGTTGAGGGTTTTGTTGA+TGG | - | chr5_4:56695833-56695852 | Msa0858840:CDS | 35.0% |
| !!! | CATTAGTCTTTTGTCTTCCA+AGG | - | chr5_4:56695866-56695885 | Msa0858840:exon | 35.0% |
| ATAAGATGACGAACTAATGG+AGG | + | chr5_4:56695939-56695958 | None:intergenic | 35.0% | |
| !! | AAGCAAAATGGTTTGCTTCT+CGG | + | chr5_4:56696083-56696102 | None:intergenic | 35.0% |
| ! | TAGTGGATCCAATCTTGATA+AGG | + | chr5_4:56695321-56695340 | None:intergenic | 35.0% |
| CACAATGATTTCATCAGTAG+TGG | + | chr5_4:56695338-56695357 | None:intergenic | 35.0% | |
| CCTCATTTCATAATCTTGGT+TGG | + | chr5_4:56695547-56695566 | None:intergenic | 35.0% | |
| CCAACCAAGATTATGAAATG+AGG | - | chr5_4:56695544-56695563 | Msa0858840:intron | 35.0% | |
| AAATACTTGGTCCGACATAT+TGG | + | chr5_4:56695604-56695623 | None:intergenic | 35.0% | |
| CCTTTCTTGCAAGAAATACT+TGG | + | chr5_4:56695617-56695636 | None:intergenic | 35.0% | |
| CCAAGTATTTCTTGCAAGAA+AGG | - | chr5_4:56695614-56695633 | Msa0858840:intron | 35.0% | |
| ATTTCTTGCAAGAAAGGCAA+AGG | - | chr5_4:56695620-56695639 | Msa0858840:intron | 35.0% | |
| !!! | TAAGTTGAGGGTTTTGTTGA+TGG | - | chr5_4:56695833-56695852 | Msa0858840:CDS | 35.0% |
| !!! | CATTAGTCTTTTGTCTTCCA+AGG | - | chr5_4:56695866-56695885 | Msa0858840:exon | 35.0% |
| ATAAGATGACGAACTAATGG+AGG | + | chr5_4:56695939-56695958 | None:intergenic | 35.0% | |
| !! | AAGCAAAATGGTTTGCTTCT+CGG | + | chr5_4:56696083-56696102 | None:intergenic | 35.0% |
| !!! | TGAATTTTGATTGGGTGCGA+TGG | + | chr5_4:56695387-56695406 | None:intergenic | 40.0% |
| TGATCCTTCAATGACTCATG+AGG | - | chr5_4:56695665-56695684 | Msa0858840:intron | 40.0% | |
| TCTTCCTCATGAGTCATTGA+AGG | + | chr5_4:56695672-56695691 | None:intergenic | 40.0% | |
| TTCAATGACTCATGAGGAAG+AGG | - | chr5_4:56695671-56695690 | Msa0858840:intron | 40.0% | |
| ! | TTATGTTGCTTGGTTGCATG+TGG | - | chr5_4:56695715-56695734 | Msa0858840:intron | 40.0% |
| !!! | TGAATTTTGATTGGGTGCGA+TGG | + | chr5_4:56695387-56695406 | None:intergenic | 40.0% |
| TGATCCTTCAATGACTCATG+AGG | - | chr5_4:56695665-56695684 | Msa0858840:intron | 40.0% | |
| TCTTCCTCATGAGTCATTGA+AGG | + | chr5_4:56695672-56695691 | None:intergenic | 40.0% | |
| TTCAATGACTCATGAGGAAG+AGG | - | chr5_4:56695671-56695690 | Msa0858840:intron | 40.0% | |
| ! | TTATGTTGCTTGGTTGCATG+TGG | - | chr5_4:56695715-56695734 | Msa0858840:intron | 40.0% |
| !! | TGGTGGTGGAGAAGAGATAT+AGG | + | chr5_4:56695367-56695386 | None:intergenic | 45.0% |
| !!! | ATTTTGATTGGGTGCGATGG+TGG | + | chr5_4:56695384-56695403 | None:intergenic | 45.0% |
| TTGCAAGAAAGGCAAAGGTG+TGG | - | chr5_4:56695625-56695644 | Msa0858840:intron | 45.0% | |
| TCTGTCTGAGCCTTGAACAA+GGG | + | chr5_4:56695897-56695916 | None:intergenic | 45.0% | |
| ATCTGTCTGAGCCTTGAACA+AGG | + | chr5_4:56695898-56695917 | None:intergenic | 45.0% | |
| TTCAAATGCTCCTCTGCCTT+TGG | - | chr5_4:56696051-56696070 | Msa0858840:five_prime_UTR | 45.0% | |
| TGCTTCTCGGAATGTTCCAA+AGG | + | chr5_4:56696070-56696089 | None:intergenic | 45.0% | |
| !! | TGGTGGTGGAGAAGAGATAT+AGG | + | chr5_4:56695367-56695386 | None:intergenic | 45.0% |
| !!! | ATTTTGATTGGGTGCGATGG+TGG | + | chr5_4:56695384-56695403 | None:intergenic | 45.0% |
| TTGCAAGAAAGGCAAAGGTG+TGG | - | chr5_4:56695625-56695644 | Msa0858840:intron | 45.0% | |
| TCTGTCTGAGCCTTGAACAA+GGG | + | chr5_4:56695897-56695916 | None:intergenic | 45.0% | |
| ATCTGTCTGAGCCTTGAACA+AGG | + | chr5_4:56695898-56695917 | None:intergenic | 45.0% | |
| TTCAAATGCTCCTCTGCCTT+TGG | - | chr5_4:56696051-56696070 | Msa0858840:five_prime_UTR | 45.0% | |
| TGCTTCTCGGAATGTTCCAA+AGG | + | chr5_4:56696070-56696089 | None:intergenic | 45.0% | |
| !! | AAAAAAATAAAATAAATGAA+AGG | + | chr5_4:56695754-56695773 | None:intergenic | 5.0% |
| !!! | TTTCATTTATTTTATTTTTT+TGG | - | chr5_4:56695753-56695772 | Msa0858840:CDS | 5.0% |
| !! | AAAAAAATAAAATAAATGAA+AGG | + | chr5_4:56695754-56695773 | None:intergenic | 5.0% |
| !!! | TTTCATTTATTTTATTTTTT+TGG | - | chr5_4:56695753-56695772 | Msa0858840:CDS | 5.0% |
| CTTGAACAAGGGGAATCCCT+TGG | + | chr5_4:56695886-56695905 | None:intergenic | 50.0% | |
| CAAGGGATTCCCCTTGTTCA+AGG | - | chr5_4:56695884-56695903 | Msa0858840:five_prime_UTR | 50.0% | |
| CTGTCTGAGCCTTGAACAAG+GGG | + | chr5_4:56695896-56695915 | None:intergenic | 50.0% | |
| TCGGAATGTTCCAAAGGCAG+AGG | + | chr5_4:56696064-56696083 | None:intergenic | 50.0% | |
| CTTGAACAAGGGGAATCCCT+TGG | + | chr5_4:56695886-56695905 | None:intergenic | 50.0% | |
| CAAGGGATTCCCCTTGTTCA+AGG | - | chr5_4:56695884-56695903 | Msa0858840:five_prime_UTR | 50.0% | |
| CTGTCTGAGCCTTGAACAAG+GGG | + | chr5_4:56695896-56695915 | None:intergenic | 50.0% | |
| TCGGAATGTTCCAAAGGCAG+AGG | + | chr5_4:56696064-56696083 | None:intergenic | 50.0% | |
| ! | TTGATTGGGTGCGATGGTGG+TGG | + | chr5_4:56695381-56695400 | None:intergenic | 55.0% |
| ! | ATGCACGACAGTGAGCACTG+AGG | + | chr5_4:56696029-56696048 | None:intergenic | 55.0% |
| ! | TTGATTGGGTGCGATGGTGG+TGG | + | chr5_4:56695381-56695400 | None:intergenic | 55.0% |
| ! | ATGCACGACAGTGAGCACTG+AGG | + | chr5_4:56696029-56696048 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 56695315 | 56696120 | 56695315 | ID=Msa0858840;Name=Msa0858840 |
| chr5_4 | mRNA | 56695315 | 56696120 | 56695315 | ID=Msa0858840-mRNA-1;Parent=Msa0858840;Name=Msa0858840-mRNA-1;_AED=0.31;_eAED=0.47;_QI=246|0|0.5|1|1|1|2|0|82 |
| chr5_4 | exon | 56695315 | 56695431 | 56695315 | ID=Msa0858840-mRNA-1:exon:17369;Parent=Msa0858840-mRNA-1 |
| chr5_4 | exon | 56695743 | 56696120 | 56695743 | ID=Msa0858840-mRNA-1:exon:17368;Parent=Msa0858840-mRNA-1 |
| chr5_4 | five_prime_UTR | 56695875 | 56696120 | 56695875 | ID=Msa0858840-mRNA-1:five_prime_utr;Parent=Msa0858840-mRNA-1 |
| chr5_4 | CDS | 56695743 | 56695874 | 56695743 | ID=Msa0858840-mRNA-1:cds;Parent=Msa0858840-mRNA-1 |
| chr5_4 | CDS | 56695315 | 56695431 | 56695315 | ID=Msa0858840-mRNA-1:cds;Parent=Msa0858840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
