AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0267970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0267970 MtrunA17_Chr3g0127251 96.795 156 5 0 4 159 4 159 2.73e-110 314
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0267970 AT1G09150.1 82.051 156 28 0 4 159 4 159 1.77e-92 269

Find 58 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAATTTCTTCATTATATC+TGG 0.192913 2_2:+69824169 None:intergenic
CACCTCTTATAGTTGCTAAA+TGG 0.288298 2_2:-69825469 Msa0267970:intron
AAAGCAATCAACAAGGGAAT+TGG 0.322873 2_2:-69823434 Msa0267970:CDS
ATTATCTCAATGATGGTCTT+TGG 0.327245 2_2:-69823397 Msa0267970:CDS
TGTCCTGGTCTTACATCTCC+TGG 0.329472 2_2:-69824097 Msa0267970:CDS
AAATATGAACTTTACATTGA+TGG 0.334633 2_2:+69825254 None:intergenic
GGGTGTTCTGGATGAGGAAG+TGG 0.336037 2_2:-69824074 Msa0267970:CDS
AACTATAAGAGGTGACTTCT+TGG 0.338003 2_2:+69825478 None:intergenic
AAAATTTCTAGTATTGTGTT+AGG 0.350915 2_2:-69822731 Msa0267970:three_prime_UTR
TGGTGCAATAAGATTTGTTT+TGG 0.351364 2_2:-69824137 Msa0267970:CDS
AAGCAATCAACAAGGGAATT+GGG 0.354037 2_2:-69823433 Msa0267970:CDS
CGCTTATGATCCCTAAAATC+TGG 0.363912 2_2:+69823056 None:intergenic
GTGTTCTGGATGAGGAAGTG+GGG 0.404683 2_2:-69824072 Msa0267970:CDS
TGGATCAAGTTCCAGAAAAC+AGG 0.408316 2_2:+69823076 None:intergenic
GAGAGCCGCGATGCCAACTT+AGG 0.431618 2_2:-69823107 Msa0267970:CDS
AACCATTTAGCAACTATAAG+AGG 0.435947 2_2:+69825467 None:intergenic
GGTGTTCTGGATGAGGAAGT+GGG 0.436303 2_2:-69824073 Msa0267970:CDS
GTCCTGGTCTTACATCTCCT+GGG 0.439119 2_2:-69824096 Msa0267970:CDS
TCCAACACTGGTTCAAGTCC+TGG 0.460743 2_2:+69825512 None:intergenic
CAAACAAAATAAAGATCAAA+TGG 0.460987 2_2:+69822829 None:intergenic
AAGAAGTTCAACTACTTTCG+TGG 0.462951 2_2:-69823464 Msa0267970:CDS
ACTATAAGAGGTGACTTCTT+GGG 0.475825 2_2:+69825479 None:intergenic
GCGTGGTTCAGCCACTCAAT+AGG 0.477544 2_2:+69822879 None:intergenic
CACACAAGTTTATTCAAAGA+TGG 0.478881 2_2:-69822857 Msa0267970:three_prime_UTR
AAACAGCATGCCCTTGCCAT+TGG 0.482054 2_2:-69823911 Msa0267970:CDS
TTTCTCATTTCAGGCCATCA+TGG 0.485619 2_2:-69823942 Msa0267970:intron
TAGTCAGAACCATCTCAATC+TGG 0.488658 2_2:-69825347 Msa0267970:CDS
TGTTCTGGATGAGGAAGTGG+GGG 0.494533 2_2:-69824071 Msa0267970:CDS
AGTCGCAAGGTAGGCATGTA+CGG 0.512614 2_2:+69825280 None:intergenic
AGAGCCGCGATGCCAACTTA+GGG 0.516621 2_2:-69823106 Msa0267970:CDS
AACTTGCATTATCTCAATGA+TGG 0.525811 2_2:-69823404 Msa0267970:CDS
ATTACTAAACTGCAGTATCC+AGG 0.527390 2_2:-69825530 Msa0267970:intron
CAAAATAAAGATCAAATGGC+AGG 0.532151 2_2:+69822833 None:intergenic
ACAGGACTGCATCCCTAAGT+TGG 0.534258 2_2:+69823094 None:intergenic
CTCATGTAAACAGTAAAGAA+AGG 0.535169 2_2:-69823009 Msa0267970:three_prime_UTR
GAACCATCTCAATCTGGTTG+TGG 0.552638 2_2:-69825341 Msa0267970:CDS
ATGTAACTTGTGGAATACAC+TGG 0.559241 2_2:-69822940 Msa0267970:three_prime_UTR
GGTGCAAACATAATGTGTCC+TGG 0.560571 2_2:-69824112 Msa0267970:CDS
GTATAATAAAACAAACTAGC+AGG 0.560702 2_2:+69823031 None:intergenic
TCCTGGTCTTACATCTCCTG+GGG 0.566559 2_2:-69824095 Msa0267970:CDS
TCCAGGACTTGAACCAGTGT+TGG 0.569000 2_2:-69825513 Msa0267970:CDS
TCTCAATGATGGTCTTTGGA+AGG 0.575361 2_2:-69823393 Msa0267970:intron
AGCAATCAACAAGGGAATTG+GGG 0.580148 2_2:-69823432 Msa0267970:CDS
ACGTCAAAGTATTGCAGATG+AGG 0.585598 2_2:-69825793 Msa0267970:intron
AGTTCTGTACTCCTATTGAG+TGG 0.595563 2_2:-69822890 Msa0267970:three_prime_UTR
TGATGGAGAAGTCGCAAGGT+AGG 0.596779 2_2:+69825271 None:intergenic
TTTCAGGCCATCATGGCTGA+AGG 0.607923 2_2:-69823935 Msa0267970:intron
TCACCACAACCAGATTGAGA+TGG 0.615908 2_2:+69825338 None:intergenic
ACATTGATGGAGAAGTCGCA+AGG 0.629589 2_2:+69825267 None:intergenic
TTTGAATAAACTTGTGTGCG+TGG 0.643292 2_2:+69822862 None:intergenic
TTCAGAAAAGCAATCAACAA+GGG 0.652972 2_2:-69823440 Msa0267970:CDS
GGAAGTATATCATCCAACAC+TGG 0.658326 2_2:+69825500 None:intergenic
TGTAACTTGTGGAATACACT+GGG 0.662827 2_2:-69822939 Msa0267970:three_prime_UTR
TTTCAGAAAAGCAATCAACA+AGG 0.684568 2_2:-69823441 Msa0267970:CDS
CCTGGTCTTACATCTCCTGG+GGG 0.695202 2_2:-69824094 Msa0267970:CDS
AAACAAATCTTATTGCACCA+CGG 0.718835 2_2:+69824140 None:intergenic
GCATCCCTAAGTTGGCATCG+CGG 0.749002 2_2:+69823102 None:intergenic
AAGAAATTACAAGTTGACCG+TGG 0.749697 2_2:-69824157 Msa0267970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGATAATTGATAAATTA+CGG + chr2_2:69824265-69824284 None:intergenic 10.0%
!! TATAATATATTAAAAATCAG+CGG + chr2_2:69825393-69825412 None:intergenic 10.0%
!! TTTGTAATATTCTTTCATTT+GGG - chr2_2:69823374-69823393 Msa0267970:intron 15.0%
!! CATATATTATCTTGATTAAA+AGG + chr2_2:69824019-69824038 None:intergenic 15.0%
!! CATATATTATCTTGATTAAA+AGG + chr2_2:69824019-69824038 None:intergenic 15.0%
!! AGAATAAAATAAAGATTGTT+AGG + chr2_2:69825417-69825436 None:intergenic 15.0%
!!! ATTTTATTCTATATTGTAGA+TGG - chr2_2:69825427-69825446 Msa0267970:intron 15.0%
!!! TACTAGAAATTTTAAGTAAA+TGG + chr2_2:69825849-69825868 None:intergenic 15.0%
!! AACCAACACAAAAAAAAAAA+AGG + chr2_2:69822828-69822847 None:intergenic 20.0%
!! AATAAAAAAGATGCATAGTT+TGG + chr2_2:69822994-69823013 None:intergenic 20.0%
!! AAATATGAACTTTACATTGA+TGG + chr2_2:69823336-69823355 None:intergenic 20.0%
!! GTTTGTAATATTCTTTCATT+TGG - chr2_2:69823373-69823392 Msa0267970:intron 20.0%
!!! TTTTTTGAGTAATGCATATA+TGG - chr2_2:69823433-69823452 Msa0267970:CDS 20.0%
!! TATGGATATAAACTACTTAT+AGG - chr2_2:69823451-69823470 Msa0267970:CDS 20.0%
!! ATGCATATATAAAGTAAAAG+AGG + chr2_2:69823724-69823743 None:intergenic 20.0%
!! TGTAATTTCTTCATTATATC+TGG + chr2_2:69824421-69824440 None:intergenic 20.0%
!! CCATTAAAATTTATACTACA+TGG + chr2_2:69825005-69825024 None:intergenic 20.0%
!!! CCATGTAGTATAAATTTTAA+TGG - chr2_2:69825002-69825021 Msa0267970:intron 20.0%
!! TAATAAGTACATGAATACAA+AGG + chr2_2:69825240-69825259 None:intergenic 20.0%
!! AAATAAGTATACATACATAG+TGG - chr2_2:69825259-69825278 Msa0267970:intron 20.0%
!!! TCTTATCTCTTTTGTTTATT+TGG - chr2_2:69825329-69825348 Msa0267970:CDS 20.0%
!!! CTTTTGTTTATTTGGAATTT+TGG - chr2_2:69825337-69825356 Msa0267970:CDS 20.0%
!! TTTGGATAGTATAACTTAAT+TGG - chr2_2:69825355-69825374 Msa0267970:intron 20.0%
!! TTGGATAGTATAACTTAATT+GGG - chr2_2:69825356-69825375 Msa0267970:intron 20.0%
!! CAAACAAAATAAAGATCAAA+TGG + chr2_2:69825761-69825780 None:intergenic 20.0%
!!! CATTTGATCTTTATTTTGTT+TGG - chr2_2:69825759-69825778 Msa0267970:intron 20.0%
!!! AAAATTTCTAGTATTGTGTT+AGG - chr2_2:69825856-69825875 Msa0267970:CDS 20.0%
! CATACAATTAGTGATATCTA+AGG + chr2_2:69822859-69822878 None:intergenic 25.0%
! TAGATATCACTAATTGTATG+TGG - chr2_2:69822859-69822878 Msa0267970:three_prime_UTR 25.0%
! AGATATCACTAATTGTATGT+GGG - chr2_2:69822860-69822879 Msa0267970:three_prime_UTR 25.0%
!! TCGTGATTCTGATAATTTTA+TGG - chr2_2:69822944-69822963 Msa0267970:three_prime_UTR 25.0%
! TAGGTTAATTAATAGTCACA+TGG + chr2_2:69823036-69823055 None:intergenic 25.0%
! ATACTGCAGTTTAGTAATTT+AGG + chr2_2:69823055-69823074 None:intergenic 25.0%
! TAATATTCTTTCATTTGGGA+GGG - chr2_2:69823378-69823397 Msa0267970:intron 25.0%
!! GAATACATGATAATGTTGAT+TGG - chr2_2:69823591-69823610 Msa0267970:intron 25.0%
! TATGTGTTGAAGATATTATC+TGG + chr2_2:69823773-69823792 None:intergenic 25.0%
! ATTAAAACTAGCAAAACTCT+TGG + chr2_2:69823866-69823885 None:intergenic 25.0%
! TATCTTGATTAAAAGGTTTG+AGG + chr2_2:69824012-69824031 None:intergenic 25.0%
! TATCTTGATTAAAAGGTTTG+AGG + chr2_2:69824012-69824031 None:intergenic 25.0%
!!! CTTCCTACATTTTAAAAAAG+AGG + chr2_2:69824238-69824257 None:intergenic 25.0%
! AAACAATCTACAAAACACAA+TGG + chr2_2:69824562-69824581 None:intergenic 25.0%
! TGAGAAAAATACATGATATG+AGG + chr2_2:69824632-69824651 None:intergenic 25.0%
!! TCATGTATTTTTCTCATTTC+AGG - chr2_2:69824636-69824655 Msa0267970:intron 25.0%
!! TGACATTTTTGTAAATCCAA+TGG + chr2_2:69824695-69824714 None:intergenic 25.0%
! TAGAGATTAGAGATAAGATA+TGG - chr2_2:69825062-69825081 Msa0267970:intron 25.0%
! GTATAATAAAACAAACTAGC+AGG + chr2_2:69825559-69825578 None:intergenic 25.0%
!! TGTAGATTTTATGTAACTTG+TGG - chr2_2:69825637-69825656 Msa0267970:intron 25.0%
!!! TGATCTTTATTTTGTTTGGT+AGG - chr2_2:69825763-69825782 Msa0267970:intron 25.0%
! TTTCAGATTTTCATCTGAAG+AGG - chr2_2:69822728-69822747 Msa0267970:three_prime_UTR 30.0%
!!! CGCCTTTTTTTTTTTTGTGT+TGG - chr2_2:69822823-69822842 Msa0267970:three_prime_UTR 30.0%
TTGAAGCTTAAACAGAATCA+CGG + chr2_2:69822893-69822912 None:intergenic 30.0%
TTGGTGAATTAATGCATGTT+TGG + chr2_2:69822975-69822994 None:intergenic 30.0%
AACCATTTAGCAACTATAAG+AGG + chr2_2:69823123-69823142 None:intergenic 30.0%
! TTGTAGTTCTATTTGCTTTG+AGG - chr2_2:69823153-69823172 Msa0267970:intron 30.0%
TCACGAACACTAAAAAACAA+AGG + chr2_2:69823283-69823302 None:intergenic 30.0%
!!! TTGTTTTTTAGTGTTCGTGA+TGG - chr2_2:69823283-69823302 Msa0267970:intron 30.0%
GTAATATTCTTTCATTTGGG+AGG - chr2_2:69823377-69823396 Msa0267970:intron 30.0%
AATATTCTTTCATTTGGGAG+GGG - chr2_2:69823379-69823398 Msa0267970:intron 30.0%
ACATATGGTGAATACTGAAT+AGG - chr2_2:69823496-69823515 Msa0267970:intron 30.0%
AGAGAAAAACAATAGCTGTT+TGG - chr2_2:69823543-69823562 Msa0267970:intron 30.0%
CTCTATACTAGAAAGTTTCT+CGG + chr2_2:69823572-69823591 None:intergenic 30.0%
! ACATGATAATGTTGATTGGT+TGG - chr2_2:69823595-69823614 Msa0267970:intron 30.0%
ACTACCACTCAATAATAAGA+CGG + chr2_2:69823818-69823837 None:intergenic 30.0%
GAGAGAACATAAAGATCATA+CGG - chr2_2:69823892-69823911 Msa0267970:CDS 30.0%
! AAAGTTTTCTCAGTTCTCAA+AGG + chr2_2:69823966-69823985 None:intergenic 30.0%
! AGGTTTGAGGAGTATAAATA+GGG + chr2_2:69823999-69824018 None:intergenic 30.0%
! AAGGTTTGAGGAGTATAAAT+AGG + chr2_2:69824000-69824019 None:intergenic 30.0%
TCTCAAGGTTATCTAAATGT+GGG + chr2_2:69824104-69824123 None:intergenic 30.0%
ACATTTAGATAACCTTGAGA+CGG - chr2_2:69824104-69824123 Msa0267970:CDS 30.0%
! AAACAAACCATTCTAGGAAA+TGG - chr2_2:69824138-69824157 Msa0267970:CDS 30.0%
TAATGACCAAAGTGAGAAAA+TGG + chr2_2:69824201-69824220 None:intergenic 30.0%
TTTAAAAAAGAGGACGAATG+CGG + chr2_2:69824228-69824247 None:intergenic 30.0%
!!! CGTCCTCTTTTTTAAAATGT+AGG - chr2_2:69824232-69824251 Msa0267970:intron 30.0%
! GAAACTCTTCCATGTTTTAT+AGG + chr2_2:69824313-69824332 None:intergenic 30.0%
TAAAACATGGAAGAGTTTCT+AGG - chr2_2:69824314-69824333 Msa0267970:intron 30.0%
AAACAAATCTTATTGCACCA+CGG + chr2_2:69824450-69824469 None:intergenic 30.0%
!! TGGTGCAATAAGATTTGTTT+TGG - chr2_2:69824450-69824469 Msa0267970:intron 30.0%
!!! TGCAATAAGATTTGTTTTGG+CGG - chr2_2:69824453-69824472 Msa0267970:intron 30.0%
! TTTTGTAAATCCAATGGCAA+GGG + chr2_2:69824689-69824708 None:intergenic 30.0%
! TTTTTGTAAATCCAATGGCA+AGG + chr2_2:69824690-69824709 None:intergenic 30.0%
AAGAGGCTCTTCATTTATTT+GGG + chr2_2:69824796-69824815 None:intergenic 30.0%
AAAGAGGCTCTTCATTTATT+TGG + chr2_2:69824797-69824816 None:intergenic 30.0%
! TAAAGTGGAAAACTTGTTTG+TGG + chr2_2:69824979-69824998 None:intergenic 30.0%
TATACTACATGGCAATAAAG+TGG + chr2_2:69824994-69825013 None:intergenic 30.0%
!!! TAGCCCTATGTTTTATTTGA+GGG + chr2_2:69825033-69825052 None:intergenic 30.0%
!!! TTAGCCCTATGTTTTATTTG+AGG + chr2_2:69825034-69825053 None:intergenic 30.0%
AATAAAACATAGGGCTAATG+TGG - chr2_2:69825036-69825055 Msa0267970:intron 30.0%
TTTCAGAAAAGCAATCAACA+AGG - chr2_2:69825146-69825165 Msa0267970:intron 30.0%
TTCAGAAAAGCAATCAACAA+GGG - chr2_2:69825147-69825166 Msa0267970:intron 30.0%
AACTTGCATTATCTCAATGA+TGG - chr2_2:69825183-69825202 Msa0267970:intron 30.0%
ATTATCTCAATGATGGTCTT+TGG - chr2_2:69825190-69825209 Msa0267970:intron 30.0%
TATTAAAAATCAGCGGTAAC+TGG + chr2_2:69825386-69825405 None:intergenic 30.0%
CTCATGTAAACAGTAAAGAA+AGG - chr2_2:69825578-69825597 Msa0267970:intron 30.0%
CACACAAGTTTATTCAAAGA+TGG - chr2_2:69825730-69825749 Msa0267970:intron 30.0%
CAAAATAAAGATCAAATGGC+AGG + chr2_2:69825757-69825776 None:intergenic 30.0%
!!! TCTTTATTTTGTTTGGTAGG+AGG - chr2_2:69825766-69825785 Msa0267970:intron 30.0%
TCACTAATTGTATGTGGGTT+TGG - chr2_2:69822865-69822884 Msa0267970:three_prime_UTR 35.0%
!!! ATGTTGTTTTTGCCTAACCA+CGG - chr2_2:69822914-69822933 Msa0267970:three_prime_UTR 35.0%
ATTACTAAACTGCAGTATCC+AGG - chr2_2:69823057-69823076 Msa0267970:CDS 35.0%
ACTATAAGAGGTGACTTCTT+GGG + chr2_2:69823111-69823130 None:intergenic 35.0%
AACTATAAGAGGTGACTTCT+TGG + chr2_2:69823112-69823131 None:intergenic 35.0%
CACCTCTTATAGTTGCTAAA+TGG - chr2_2:69823118-69823137 Msa0267970:CDS 35.0%
TTCACCATATGTGTTGAACA+CGG + chr2_2:69823488-69823507 None:intergenic 35.0%
AACTGTACTGTTCATACCAA+AGG - chr2_2:69823631-69823650 Msa0267970:intron 35.0%
ACTGTACTGTTCATACCAAA+GGG - chr2_2:69823632-69823651 Msa0267970:intron 35.0%
AGCAACATCAATGTTCTGAT+TGG - chr2_2:69823666-69823685 Msa0267970:intron 35.0%
! GGTTTGAGGAGTATAAATAG+GGG + chr2_2:69823998-69824017 None:intergenic 35.0%
CTCAAGGTTATCTAAATGTG+GGG + chr2_2:69824103-69824122 None:intergenic 35.0%
GTCTCAAGGTTATCTAAATG+TGG + chr2_2:69824105-69824124 None:intergenic 35.0%
! AAACCATTCTAGGAAATGGA+GGG - chr2_2:69824142-69824161 Msa0267970:CDS 35.0%
! GTGCTTTTGGTCAAAGTATA+GGG + chr2_2:69824291-69824310 None:intergenic 35.0%
! CCATGTTTTATAGGTGCTTT+TGG + chr2_2:69824304-69824323 None:intergenic 35.0%
!! CCAAAAGCACCTATAAAACA+TGG - chr2_2:69824301-69824320 Msa0267970:intron 35.0%
! AAGAAATTACAAGTTGACCG+TGG - chr2_2:69824430-69824449 Msa0267970:intron 35.0%
!!! GCAATAAGATTTGTTTTGGC+GGG - chr2_2:69824454-69824473 Msa0267970:intron 35.0%
! ATGTCAACCAGAGAGTATAA+TGG + chr2_2:69824838-69824857 None:intergenic 35.0%
AGCTCCCTCAAATAAAACAT+AGG - chr2_2:69825026-69825045 Msa0267970:intron 35.0%
GCTCCCTCAAATAAAACATA+GGG - chr2_2:69825027-69825046 Msa0267970:intron 35.0%
CAATCATCGAAACTGAAACT+AGG + chr2_2:69825092-69825111 None:intergenic 35.0%
AAGAAGTTCAACTACTTTCG+TGG - chr2_2:69825123-69825142 Msa0267970:intron 35.0%
AAAGCAATCAACAAGGGAAT+TGG - chr2_2:69825153-69825172 Msa0267970:intron 35.0%
AAGCAATCAACAAGGGAATT+GGG - chr2_2:69825154-69825173 Msa0267970:intron 35.0%
! TGGAACTTGATCCAGATTTT+AGG - chr2_2:69825520-69825539 Msa0267970:intron 35.0%
! GGAACTTGATCCAGATTTTA+GGG - chr2_2:69825521-69825540 Msa0267970:intron 35.0%
! ATGTAACTTGTGGAATACAC+TGG - chr2_2:69825647-69825666 Msa0267970:intron 35.0%
! TGTAACTTGTGGAATACACT+GGG - chr2_2:69825648-69825667 Msa0267970:intron 35.0%
TTTGAATAAACTTGTGTGCG+TGG + chr2_2:69825728-69825747 None:intergenic 35.0%
!! ACGTCAAAGTATTGCAGATG+AGG - chr2_2:69822794-69822813 Msa0267970:three_prime_UTR 40.0%
! GGAAGTATATCATCCAACAC+TGG + chr2_2:69823090-69823109 None:intergenic 40.0%
! GGTTCTGACTACAAGAACAA+CGG + chr2_2:69823231-69823250 None:intergenic 40.0%
TAGTCAGAACCATCTCAATC+TGG - chr2_2:69823240-69823259 Msa0267970:intron 40.0%
TGATCCGTGTTCAACACATA+TGG - chr2_2:69823481-69823500 Msa0267970:intron 40.0%
GTTCATACCAAAGGGCTATA+AGG - chr2_2:69823640-69823659 Msa0267970:intron 40.0%
CTTTCTCTCAAGCATAGTGA+TGG - chr2_2:69823744-69823763 Msa0267970:intron 40.0%
! TCTGCCGTCTTATTATTGAG+TGG - chr2_2:69823811-69823830 Msa0267970:intron 40.0%
TTCTCAGTTCTCAAAGGTTC+AGG + chr2_2:69823960-69823979 None:intergenic 40.0%
TTTAGATAACCTTGAGACGG+AGG - chr2_2:69824107-69824126 Msa0267970:CDS 40.0%
TTAGATAACCTTGAGACGGA+GGG - chr2_2:69824108-69824127 Msa0267970:CDS 40.0%
! CAAACCATTCTAGGAAATGG+AGG - chr2_2:69824141-69824160 Msa0267970:CDS 40.0%
! AACCATTCTAGGAAATGGAG+GGG - chr2_2:69824143-69824162 Msa0267970:CDS 40.0%
! ACAAGCCATTGTTATTGCCT+TGG - chr2_2:69824170-69824189 Msa0267970:CDS 40.0%
AACCACCAAGGCAATAACAA+TGG + chr2_2:69824178-69824197 None:intergenic 40.0%
! GTGGTTCCATTTTCTCACTT+TGG - chr2_2:69824192-69824211 Msa0267970:intron 40.0%
! CTTTTGGTCAAAGTATAGGG+AGG + chr2_2:69824288-69824307 None:intergenic 40.0%
! GGTGCTTTTGGTCAAAGTAT+AGG + chr2_2:69824292-69824311 None:intergenic 40.0%
TTTCTCATTTCAGGCCATCA+TGG - chr2_2:69824645-69824664 Msa0267970:intron 40.0%
! CCAGAGAGTATAATGGTAAG+AGG + chr2_2:69824831-69824850 None:intergenic 40.0%
CCTCTTACCATTATACTCTC+TGG - chr2_2:69824828-69824847 Msa0267970:intron 40.0%
! AACTTGTTTGTGGAAGGAAG+TGG + chr2_2:69824969-69824988 None:intergenic 40.0%
! GTGGAAAACTTGTTTGTGGA+AGG + chr2_2:69824975-69824994 None:intergenic 40.0%
AGCAATCAACAAGGGAATTG+GGG - chr2_2:69825155-69825174 Msa0267970:intron 40.0%
TCTCAATGATGGTCTTTGGA+AGG - chr2_2:69825194-69825213 Msa0267970:intron 40.0%
TATTTGATGTGCTACCATCG+TGG - chr2_2:69825302-69825321 Msa0267970:CDS 40.0%
AGAGATAAGAAAAGCCACGA+TGG + chr2_2:69825319-69825338 None:intergenic 40.0%
TGGATCAAGTTCCAGAAAAC+AGG + chr2_2:69825514-69825533 None:intergenic 40.0%
CGCTTATGATCCCTAAAATC+TGG + chr2_2:69825534-69825553 None:intergenic 40.0%
AGTTCTGTACTCCTATTGAG+TGG - chr2_2:69825697-69825716 Msa0267970:intron 40.0%
!!! TTGTTTTTGCCTAACCACGG+TGG - chr2_2:69822917-69822936 Msa0267970:three_prime_UTR 45.0%
GAACCATCTCAATCTGGTTG+TGG - chr2_2:69823246-69823265 Msa0267970:intron 45.0%
TCACCACAACCAGATTGAGA+TGG + chr2_2:69823252-69823271 None:intergenic 45.0%
ACATTGATGGAGAAGTCGCA+AGG + chr2_2:69823323-69823342 None:intergenic 45.0%
TGCTCAACCTTATAGCCCTT+TGG + chr2_2:69823650-69823669 None:intergenic 45.0%
GGGGGAAAACAAACCATTCT+AGG - chr2_2:69824132-69824151 Msa0267970:CDS 45.0%
! ACCATTCTAGGAAATGGAGG+GGG - chr2_2:69824144-69824163 Msa0267970:CDS 45.0%
! AGCCATTGTTATTGCCTTGG+TGG - chr2_2:69824173-69824192 Msa0267970:CDS 45.0%
GTGAGAAAATGGAACCACCA+AGG + chr2_2:69824190-69824209 None:intergenic 45.0%
CAGACATTATGCTCTGCAGT+TGG - chr2_2:69824345-69824364 Msa0267970:intron 45.0%
GGTGCAAACATAATGTGTCC+TGG - chr2_2:69824475-69824494 Msa0267970:intron 45.0%
AAACACAATGGCAGTACCAC+AGG + chr2_2:69824550-69824569 None:intergenic 45.0%
! CTGTTTTCCTTCAGCCATGA+TGG + chr2_2:69824662-69824681 None:intergenic 45.0%
! AGAGGCAGAGTTTCTGAAAG+AGG + chr2_2:69824813-69824832 None:intergenic 45.0%
AGAGGTGGAGCTACATGTTT+AGG - chr2_2:69824932-69824951 Msa0267970:intron 45.0%
GTGGAGCTACATGTTTAGGT+GGG - chr2_2:69824936-69824955 Msa0267970:intron 45.0%
TGGAGCTACATGTTTAGGTG+GGG - chr2_2:69824937-69824956 Msa0267970:intron 45.0%
TCCAGGACTTGAACCAGTGT+TGG - chr2_2:69823074-69823093 Msa0267970:CDS 50.0%
!! TCCAACACTGGTTCAAGTCC+TGG + chr2_2:69823078-69823097 None:intergenic 50.0%
AGTCGCAAGGTAGGCATGTA+CGG + chr2_2:69823310-69823329 None:intergenic 50.0%
TGATGGAGAAGTCGCAAGGT+AGG + chr2_2:69823319-69823338 None:intergenic 50.0%
ATAACCTTGAGACGGAGGGA+GGG - chr2_2:69824112-69824131 Msa0267970:CDS 50.0%
TCCCCCTCCATTTCCTAGAA+TGG + chr2_2:69824148-69824167 None:intergenic 50.0%
!! TGTCCTGGTCTTACATCTCC+TGG - chr2_2:69824490-69824509 Msa0267970:intron 50.0%
!! GTCCTGGTCTTACATCTCCT+GGG - chr2_2:69824491-69824510 Msa0267970:intron 50.0%
!! TCCTGGTCTTACATCTCCTG+GGG - chr2_2:69824492-69824511 Msa0267970:intron 50.0%
! GGTGTTCTGGATGAGGAAGT+GGG - chr2_2:69824514-69824533 Msa0267970:intron 50.0%
! GTGTTCTGGATGAGGAAGTG+GGG - chr2_2:69824515-69824534 Msa0267970:intron 50.0%
! TGTTCTGGATGAGGAAGTGG+GGG - chr2_2:69824516-69824535 Msa0267970:intron 50.0%
TTTCAGGCCATCATGGCTGA+AGG - chr2_2:69824652-69824671 Msa0267970:intron 50.0%
AAACAGCATGCCCTTGCCAT+TGG - chr2_2:69824676-69824695 Msa0267970:intron 50.0%
CCTCTAATTGCACGAGGTTG+TGG + chr2_2:69824917-69824936 None:intergenic 50.0%
CCACAACCTCGTGCAATTAG+AGG - chr2_2:69824914-69824933 Msa0267970:intron 50.0%
CAACCTCGTGCAATTAGAGG+TGG - chr2_2:69824917-69824936 Msa0267970:intron 50.0%
GGTGGAGCTACATGTTTAGG+TGG - chr2_2:69824935-69824954 Msa0267970:intron 50.0%
GGAGCTACATGTTTAGGTGG+GGG - chr2_2:69824938-69824957 Msa0267970:intron 50.0%
ACAGGACTGCATCCCTAAGT+TGG + chr2_2:69825496-69825515 None:intergenic 50.0%
! AGGGATGCAGTCCTGTTTTC+TGG - chr2_2:69825500-69825519 Msa0267970:CDS 50.0%
AGAATCACGATGAGCCACCG+TGG + chr2_2:69822934-69822953 None:intergenic 55.0%
GATAACCTTGAGACGGAGGG+AGG - chr2_2:69824111-69824130 Msa0267970:CDS 55.0%
TAACCTTGAGACGGAGGGAG+GGG - chr2_2:69824113-69824132 Msa0267970:CDS 55.0%
!! CCTGGTCTTACATCTCCTGG+GGG - chr2_2:69824493-69824512 Msa0267970:intron 55.0%
!! TACATCTCCTGGGGGTGTTC+TGG - chr2_2:69824501-69824520 Msa0267970:intron 55.0%
! GGGTGTTCTGGATGAGGAAG+TGG - chr2_2:69824513-69824532 Msa0267970:intron 55.0%
GCTCCACCTCTAATTGCACG+AGG + chr2_2:69824923-69824942 None:intergenic 55.0%
AGAGCCGCGATGCCAACTTA+GGG - chr2_2:69825481-69825500 Msa0267970:CDS 55.0%
! GCATCCCTAAGTTGGCATCG+CGG + chr2_2:69825488-69825507 None:intergenic 55.0%
GCGTGGTTCAGCCACTCAAT+AGG + chr2_2:69825711-69825730 None:intergenic 55.0%
CACGATGAGCCACCGTGGTT+AGG + chr2_2:69822929-69822948 None:intergenic 60.0%
AACCTTGAGACGGAGGGAGG+GGG - chr2_2:69824114-69824133 Msa0267970:CDS 60.0%
CCCCCAGGAGATGTAAGACC+AGG + chr2_2:69824496-69824515 None:intergenic 60.0%
!! TCCTGGGGGTGTTCTGGATG+AGG - chr2_2:69824507-69824526 Msa0267970:intron 60.0%
TCCTCATCCAGAACACCCCC+AGG + chr2_2:69824511-69824530 None:intergenic 60.0%
AGTGGGGGCAGAATGTCCTG+TGG - chr2_2:69824531-69824550 Msa0267970:intron 60.0%
GAGAGCCGCGATGCCAACTT+AGG - chr2_2:69825480-69825499 Msa0267970:CDS 60.0%
TTCCCCCTCCCTCCGTCTCA+AGG + chr2_2:69824119-69824138 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 69822723 69825886 69822723 ID=Msa0267970;Name=Msa0267970
chr2_2 mRNA 69822723 69825886 69822723 ID=Msa0267970-mRNA-1;Parent=Msa0267970;Name=Msa0267970-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.83|0.71|1|0.66|0.85|7|323|223
chr2_2 exon 69822723 69823163 69822723 ID=Msa0267970-mRNA-1:exon:22333;Parent=Msa0267970-mRNA-1
chr2_2 exon 69823394 69823483 69823394 ID=Msa0267970-mRNA-1:exon:22332;Parent=Msa0267970-mRNA-1
chr2_2 exon 69823884 69823951 69823884 ID=Msa0267970-mRNA-1:exon:22331;Parent=Msa0267970-mRNA-1
chr2_2 exon 69824057 69824193 69824057 ID=Msa0267970-mRNA-1:exon:22330;Parent=Msa0267970-mRNA-1
chr2_2 exon 69825269 69825366 69825269 ID=Msa0267970-mRNA-1:exon:22329;Parent=Msa0267970-mRNA-1
chr2_2 exon 69825470 69825537 69825470 ID=Msa0267970-mRNA-1:exon:22328;Parent=Msa0267970-mRNA-1
chr2_2 exon 69825794 69825886 69825794 ID=Msa0267970-mRNA-1:exon:22327;Parent=Msa0267970-mRNA-1
chr2_2 CDS 69825794 69825886 69825794 ID=Msa0267970-mRNA-1:cds;Parent=Msa0267970-mRNA-1
chr2_2 CDS 69825470 69825537 69825470 ID=Msa0267970-mRNA-1:cds;Parent=Msa0267970-mRNA-1
chr2_2 CDS 69825269 69825366 69825269 ID=Msa0267970-mRNA-1:cds;Parent=Msa0267970-mRNA-1
chr2_2 CDS 69824057 69824193 69824057 ID=Msa0267970-mRNA-1:cds;Parent=Msa0267970-mRNA-1
chr2_2 CDS 69823884 69823951 69823884 ID=Msa0267970-mRNA-1:cds;Parent=Msa0267970-mRNA-1
chr2_2 CDS 69823394 69823483 69823394 ID=Msa0267970-mRNA-1:cds;Parent=Msa0267970-mRNA-1
chr2_2 CDS 69823046 69823163 69823046 ID=Msa0267970-mRNA-1:cds;Parent=Msa0267970-mRNA-1
chr2_2 three_prime_UTR 69822723 69823045 69822723 ID=Msa0267970-mRNA-1:three_prime_utr;Parent=Msa0267970-mRNA-1
Gene Sequence

>Msa0267970

TTGCTTTTCAGATTTTCATCTGAAGAGGTGTCTGCACAGAATCAAGTGAAAGCATCTGTTCAAAGAAGAATACGTCAAAGTATTGCAGATGAGTATCCAGGACTTGAACCAGTGTTGGATGATATACTTCCCAAGAAGTCACCTCTTATAGTTGCTAAATGTCAGAACCATCTCAATCTGGTTGTGGTGAACAATGTGCCTTTGTTTTTTAGTGTTCGTGATGGTCCGTACATGCCTACCTTGCGACTTCTCCATCAATATCCAGATATAATGAAGAAATTACAAGTTGACCGTGGTGCAATAAGATTTGTTTTGGCGGGTGCAAACATAATGTGTCCTGGTCTTACATCTCCTGGGGGTGTTCTGGATGAGGAAGTGGGGGCAGAATGTCCTGTGGCCATCATGGCTGAAGGAAAACAGCATGCCCTTGCCATTGGATTTACAAAAATGTCAGCAAAAGACATAAGTTCAACTACTTTCGTGGTTTCAGAAAAGCAATCAACAAGGGAATTGGGGTCGACAACTTGCATTATCTCAATGATGGTCTTTGGAAGATGGAGCGATTTGATTGAAGATGTTGCAACTTGCGAGAGCCGCGATGCCAACTTAGGGATGCAGTCCTGTTTTCTGGAACTTGATCCAGATTTTAGGGATCATAAGCGAACCTGCTAG

Protein sequence

>Msa0267970

LLFRFSSEEVSAQNQVKASVQRRIRQSIADEYPGLEPVLDDILPKKSPLIVAKCQNHLNLVVVNNVPLFFSVRDGPYMPTLRLLHQYPDIMKKLQVDRGAIRFVLAGANIMCPGLTSPGGVLDEEVGAECPVAIMAEGKQHALAIGFTKMSAKDISSTTFVVSEKQSTRELGSTTCIISMMVFGRWSDLIEDVATCESRDANLGMQSCFLELDPDFRDHKRTC*