Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421590 | XP_003601714.1 | 98.227 | 282 | 5 | 0 | 1 | 282 | 1 | 282 | 0.0 | 582 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421590 | sp|P35694|XTH2_SOYBN | 82.746 | 284 | 43 | 2 | 1 | 279 | 1 | 283 | 8.58e-177 | 491 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421590 | G7JAU8 | 98.227 | 282 | 5 | 0 | 1 | 282 | 1 | 282 | 0.0 | 582 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0198210 | Msa0421590 | 0.822403 | 2.413930e-53 | -8.615850e-47 |
| Msa0371510 | Msa0421590 | 0.806869 | 6.672183e-50 | -8.615850e-47 |
| Msa0373050 | Msa0421590 | 0.914478 | 1.828694e-84 | -8.615850e-47 |
| Msa0373060 | Msa0421590 | 0.885007 | 1.178222e-71 | -8.615850e-47 |
| Msa0421580 | Msa0421590 | 0.882753 | 7.993615e-71 | -8.615850e-47 |
| Msa0421590 | Msa0467590 | 0.984996 | 3.258735e-162 | -8.615850e-47 |
| Msa0421590 | Msa0467600 | 0.876421 | 1.415519e-68 | -8.615850e-47 |
| Msa0421590 | Msa0573650 | 0.864418 | 1.233749e-64 | -8.615850e-47 |
| Msa0421590 | Msa0576180 | 0.809654 | 1.700377e-50 | -8.615850e-47 |
| Msa0421590 | Msa0627580 | 0.805843 | 1.097373e-49 | -8.615850e-47 |
| Msa0421590 | Msa0647320 | 0.818473 | 1.924334e-52 | -8.615850e-47 |
| Msa0421590 | Msa0690190 | 0.821183 | 4.622354e-53 | -8.615850e-47 |
| Msa0421590 | Msa0690930 | 0.810185 | 1.307192e-50 | -8.615850e-47 |
| Msa0421590 | Msa0707490 | 0.874982 | 4.412375e-68 | -8.615850e-47 |
| Msa0421590 | Msa0930210 | 0.805765 | 1.139620e-49 | -8.615850e-47 |
| Msa0421590 | Msa1088150 | 0.919598 | 3.687218e-87 | -8.615850e-47 |
| Msa0421590 | Msa1088160 | 0.893355 | 6.787270e-75 | -8.615850e-47 |
| Msa0421590 | Msa1117760 | 0.805283 | 1.438602e-49 | -8.615850e-47 |
| Msa0421590 | Msa1451000 | 0.872106 | 4.102178e-67 | -8.615850e-47 |
| Msa0242820 | Msa0421590 | 0.812903 | 3.354718e-51 | -8.615850e-47 |
| Msa0287660 | Msa0421590 | 0.819032 | 1.436624e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421590 | MtrunA17_Chr3g0122031 | 98.227 | 282 | 5 | 0 | 1 | 282 | 1 | 282 | 0.0 | 582 |
| Msa0421590 | MtrunA17_Chr3g0122021 | 97.872 | 282 | 6 | 0 | 1 | 282 | 1 | 282 | 0.0 | 580 |
| Msa0421590 | MtrunA17_Chr8g0377841 | 86.617 | 269 | 34 | 2 | 10 | 277 | 14 | 281 | 5.13e-178 | 491 |
| Msa0421590 | MtrunA17_Chr8g0389641 | 80.851 | 282 | 17 | 2 | 1 | 281 | 1 | 246 | 1.17e-166 | 461 |
| Msa0421590 | MtrunA17_Chr4g0072611 | 71.956 | 271 | 70 | 1 | 14 | 278 | 11 | 281 | 1.11e-144 | 407 |
| Msa0421590 | MtrunA17_Chr7g0258911 | 72.222 | 270 | 69 | 1 | 14 | 277 | 10 | 279 | 4.18e-142 | 400 |
| Msa0421590 | MtrunA17_Chr4g0072671 | 72.285 | 267 | 64 | 1 | 21 | 277 | 19 | 285 | 1.23e-139 | 395 |
| Msa0421590 | MtrunA17_Chr4g0072601 | 63.604 | 283 | 97 | 1 | 1 | 277 | 1 | 283 | 2.92e-133 | 379 |
| Msa0421590 | MtrunA17_Chr2g0299061 | 66.547 | 278 | 82 | 1 | 11 | 277 | 9 | 286 | 9.32e-133 | 377 |
| Msa0421590 | MtrunA17_Chr4g0071341 | 67.300 | 263 | 79 | 1 | 22 | 277 | 19 | 281 | 2.43e-131 | 374 |
| Msa0421590 | MtrunA17_Chr4g0072681 | 73.516 | 219 | 47 | 2 | 70 | 277 | 25 | 243 | 1.38e-115 | 332 |
| Msa0421590 | MtrunA17_Chr5g0443391 | 52.098 | 286 | 130 | 3 | 1 | 281 | 1 | 284 | 7.78e-107 | 311 |
| Msa0421590 | MtrunA17_Chr7g0252631 | 52.740 | 292 | 126 | 3 | 1 | 281 | 1 | 291 | 1.32e-106 | 311 |
| Msa0421590 | MtrunA17_Chr7g0252621 | 52.069 | 290 | 127 | 3 | 1 | 279 | 1 | 289 | 6.85e-105 | 306 |
| Msa0421590 | MtrunA17_Chr6g0461731 | 51.712 | 292 | 123 | 4 | 7 | 281 | 24 | 314 | 1.12e-103 | 305 |
| Msa0421590 | MtrunA17_Chr7g0252601 | 51.370 | 292 | 130 | 4 | 1 | 281 | 1 | 291 | 3.56e-103 | 302 |
| Msa0421590 | MtrunA17_Chr6g0461761 | 51.027 | 292 | 131 | 3 | 1 | 281 | 1 | 291 | 6.78e-103 | 301 |
| Msa0421590 | MtrunA17_Chr6g0486581 | 48.936 | 282 | 129 | 3 | 14 | 282 | 9 | 288 | 4.21e-97 | 287 |
| Msa0421590 | MtrunA17_Chr3g0096651 | 50.973 | 257 | 123 | 1 | 26 | 279 | 28 | 284 | 4.96e-96 | 284 |
| Msa0421590 | MtrunA17_Chr4g0023961 | 49.286 | 280 | 122 | 5 | 14 | 277 | 13 | 288 | 7.24e-95 | 281 |
| Msa0421590 | MtrunA17_Chr1g0206681 | 47.810 | 274 | 133 | 2 | 17 | 282 | 25 | 296 | 2.02e-94 | 280 |
| Msa0421590 | MtrunA17_Chr2g0323161 | 48.136 | 295 | 127 | 7 | 1 | 279 | 4 | 288 | 2.20e-94 | 280 |
| Msa0421590 | MtrunA17_Chr4g0054431 | 48.387 | 279 | 135 | 4 | 6 | 277 | 11 | 287 | 1.65e-93 | 278 |
| Msa0421590 | MtrunA17_Chr4g0054451 | 48.000 | 275 | 135 | 3 | 10 | 277 | 16 | 289 | 2.70e-93 | 277 |
| Msa0421590 | MtrunA17_Chr1g0206081 | 44.604 | 278 | 142 | 3 | 11 | 277 | 18 | 294 | 5.61e-84 | 254 |
| Msa0421590 | MtrunA17_Chr8g0390201 | 53.500 | 200 | 83 | 3 | 93 | 282 | 15 | 214 | 5.55e-74 | 225 |
| Msa0421590 | MtrunA17_Chr8g0340001 | 45.339 | 236 | 114 | 4 | 52 | 277 | 1 | 231 | 2.42e-70 | 217 |
| Msa0421590 | MtrunA17_Chr7g0264731 | 41.961 | 255 | 132 | 5 | 25 | 268 | 34 | 283 | 1.98e-63 | 201 |
| Msa0421590 | MtrunA17_Chr2g0327411 | 41.065 | 263 | 136 | 6 | 18 | 268 | 46 | 301 | 1.46e-60 | 194 |
| Msa0421590 | MtrunA17_Chr4g0028221 | 41.667 | 264 | 133 | 7 | 27 | 277 | 49 | 304 | 2.91e-60 | 193 |
| Msa0421590 | MtrunA17_Chr1g0180451 | 40.152 | 264 | 141 | 6 | 25 | 277 | 37 | 294 | 1.96e-59 | 191 |
| Msa0421590 | MtrunA17_Chr2g0303861 | 38.610 | 259 | 142 | 7 | 28 | 278 | 29 | 278 | 5.24e-56 | 182 |
| Msa0421590 | MtrunA17_Chr8g0375981 | 36.398 | 261 | 154 | 5 | 28 | 277 | 31 | 290 | 8.26e-55 | 180 |
| Msa0421590 | MtrunA17_Chr1g0161951 | 37.548 | 261 | 150 | 6 | 28 | 277 | 33 | 291 | 1.84e-52 | 174 |
| Msa0421590 | MtrunA17_Chr5g0410621 | 35.714 | 266 | 153 | 7 | 28 | 277 | 42 | 305 | 2.15e-50 | 169 |
| Msa0421590 | MtrunA17_Chr8g0365231 | 34.586 | 266 | 151 | 8 | 32 | 278 | 50 | 311 | 1.27e-49 | 166 |
| Msa0421590 | MtrunA17_Chr4g0072641 | 63.333 | 120 | 36 | 1 | 158 | 277 | 37 | 148 | 2.00e-49 | 160 |
| Msa0421590 | MtrunA17_Chr7g0235541 | 42.857 | 203 | 100 | 5 | 75 | 265 | 1 | 199 | 3.01e-49 | 162 |
| Msa0421590 | MtrunA17_Chr2g0303721 | 34.921 | 252 | 144 | 6 | 28 | 271 | 30 | 269 | 1.57e-47 | 159 |
| Msa0421590 | MtrunA17_Chr8g0382041 | 34.601 | 263 | 157 | 5 | 28 | 277 | 34 | 294 | 1.69e-44 | 153 |
| Msa0421590 | MtrunA17_Chr4g0072631 | 60.000 | 70 | 27 | 1 | 7 | 75 | 9 | 78 | 1.21e-21 | 87.4 |
| Msa0421590 | MtrunA17_Chr8g0390181 | 46.809 | 94 | 45 | 2 | 5 | 95 | 2 | 93 | 1.38e-18 | 79.0 |
| Msa0421590 | MtrunA17_Chr8g0374231 | 41.667 | 108 | 42 | 5 | 184 | 277 | 1 | 101 | 5.13e-18 | 77.8 |
| Msa0421590 | MtrunA17_Chr8g0350711 | 32.558 | 172 | 108 | 5 | 50 | 219 | 54 | 219 | 1.72e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421590 | AT3G23730.1 | 72.378 | 286 | 68 | 2 | 7 | 281 | 5 | 290 | 1.06e-164 | 459 |
| Msa0421590 | AT4G14130.1 | 73.264 | 288 | 70 | 2 | 1 | 281 | 1 | 288 | 7.54e-164 | 456 |
| Msa0421590 | AT4G25810.1 | 65.091 | 275 | 88 | 1 | 11 | 277 | 9 | 283 | 1.36e-133 | 380 |
| Msa0421590 | AT5G57550.1 | 64.981 | 257 | 87 | 1 | 25 | 278 | 27 | 283 | 2.12e-129 | 369 |
| Msa0421590 | AT4G30270.1 | 64.885 | 262 | 84 | 1 | 16 | 277 | 12 | 265 | 2.40e-129 | 368 |
| Msa0421590 | AT5G57560.1 | 62.455 | 277 | 91 | 2 | 10 | 277 | 9 | 281 | 4.18e-129 | 368 |
| Msa0421590 | AT5G57530.1 | 63.846 | 260 | 86 | 2 | 25 | 277 | 24 | 282 | 8.58e-124 | 355 |
| Msa0421590 | AT5G57540.1 | 62.692 | 260 | 89 | 2 | 25 | 277 | 23 | 281 | 1.81e-122 | 351 |
| Msa0421590 | AT2G18800.1 | 58.571 | 280 | 97 | 2 | 17 | 277 | 17 | 296 | 2.47e-121 | 349 |
| Msa0421590 | AT4G25820.1 | 63.534 | 266 | 89 | 2 | 20 | 278 | 22 | 286 | 1.61e-120 | 347 |
| Msa0421590 | AT5G48070.1 | 57.565 | 271 | 112 | 2 | 10 | 277 | 11 | 281 | 1.15e-117 | 339 |
| Msa0421590 | AT4G30290.1 | 58.672 | 271 | 109 | 2 | 10 | 277 | 6 | 276 | 2.84e-110 | 320 |
| Msa0421590 | AT4G30280.1 | 57.778 | 270 | 111 | 2 | 11 | 277 | 12 | 281 | 3.68e-109 | 317 |
| Msa0421590 | AT1G65310.2 | 60.000 | 260 | 101 | 2 | 21 | 277 | 44 | 303 | 3.52e-108 | 316 |
| Msa0421590 | AT1G65310.1 | 60.000 | 260 | 101 | 2 | 21 | 277 | 22 | 281 | 4.59e-108 | 315 |
| Msa0421590 | AT5G13870.2 | 54.406 | 261 | 111 | 2 | 28 | 281 | 32 | 291 | 8.03e-102 | 299 |
| Msa0421590 | AT5G13870.1 | 54.406 | 261 | 111 | 2 | 28 | 281 | 32 | 291 | 8.03e-102 | 299 |
| Msa0421590 | AT5G13870.3 | 54.406 | 261 | 111 | 2 | 28 | 281 | 32 | 291 | 8.03e-102 | 299 |
| Msa0421590 | AT2G06850.1 | 52.281 | 285 | 122 | 3 | 10 | 281 | 11 | 294 | 6.25e-101 | 297 |
| Msa0421590 | AT4G03210.1 | 48.936 | 282 | 130 | 5 | 10 | 281 | 11 | 288 | 1.17e-96 | 286 |
| Msa0421590 | AT2G14620.1 | 45.833 | 288 | 141 | 2 | 10 | 282 | 12 | 299 | 4.64e-94 | 280 |
| Msa0421590 | AT2G06850.2 | 57.143 | 231 | 91 | 2 | 58 | 281 | 5 | 234 | 6.35e-93 | 275 |
| Msa0421590 | AT4G28850.1 | 48.252 | 286 | 132 | 5 | 10 | 282 | 10 | 292 | 1.55e-92 | 276 |
| Msa0421590 | AT5G65730.1 | 48.921 | 278 | 126 | 6 | 11 | 278 | 20 | 291 | 9.17e-92 | 274 |
| Msa0421590 | AT4G37800.1 | 48.120 | 266 | 126 | 4 | 21 | 277 | 27 | 289 | 7.28e-89 | 266 |
| Msa0421590 | AT4G03210.2 | 52.381 | 231 | 100 | 3 | 60 | 281 | 31 | 260 | 4.91e-87 | 261 |
| Msa0421590 | AT1G11545.1 | 45.357 | 280 | 139 | 4 | 11 | 277 | 21 | 299 | 2.81e-86 | 260 |
| Msa0421590 | AT2G14620.2 | 48.276 | 232 | 112 | 1 | 59 | 282 | 18 | 249 | 1.22e-82 | 249 |
| Msa0421590 | AT2G14620.3 | 48.879 | 223 | 106 | 1 | 68 | 282 | 16 | 238 | 1.49e-80 | 243 |
| Msa0421590 | AT4G13090.1 | 40.893 | 291 | 151 | 4 | 7 | 278 | 1 | 289 | 3.85e-75 | 231 |
| Msa0421590 | AT3G25050.1 | 41.313 | 259 | 139 | 3 | 28 | 277 | 35 | 289 | 3.35e-74 | 229 |
| Msa0421590 | AT4G13080.1 | 45.038 | 262 | 125 | 7 | 28 | 278 | 39 | 292 | 3.68e-72 | 224 |
| Msa0421590 | AT2G36870.1 | 42.857 | 266 | 135 | 6 | 25 | 279 | 40 | 299 | 1.23e-63 | 202 |
| Msa0421590 | AT3G44990.1 | 40.221 | 271 | 143 | 8 | 18 | 277 | 31 | 293 | 1.04e-58 | 189 |
| Msa0421590 | AT1G14720.1 | 34.783 | 299 | 170 | 7 | 7 | 281 | 4 | 301 | 2.87e-53 | 176 |
| Msa0421590 | AT1G32170.1 | 34.471 | 293 | 163 | 8 | 8 | 277 | 7 | 293 | 3.11e-53 | 177 |
| Msa0421590 | AT1G10550.1 | 34.926 | 272 | 142 | 8 | 32 | 277 | 47 | 309 | 3.81e-52 | 173 |
| Msa0421590 | AT2G01850.1 | 31.773 | 299 | 179 | 6 | 7 | 281 | 4 | 301 | 1.93e-50 | 169 |
| Msa0421590 | AT4G18990.1 | 34.601 | 263 | 140 | 7 | 50 | 282 | 62 | 322 | 2.05e-44 | 154 |
| Msa0421590 | AT3G48580.1 | 33.603 | 247 | 146 | 7 | 35 | 277 | 41 | 273 | 3.77e-43 | 149 |
| Msa0421590 | AT4G18990.2 | 33.755 | 237 | 121 | 8 | 77 | 282 | 17 | 248 | 5.92e-37 | 132 |
| Msa0421590 | AT3G48580.3 | 31.696 | 224 | 136 | 6 | 58 | 277 | 4 | 214 | 2.24e-36 | 129 |
| Msa0421590 | AT2G36870.2 | 43.262 | 141 | 70 | 3 | 25 | 157 | 40 | 178 | 2.66e-30 | 112 |
| Msa0421590 | AT3G48580.2 | 29.555 | 247 | 136 | 8 | 35 | 277 | 41 | 253 | 9.67e-28 | 108 |
Find 74 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTCATTGGTTGGTTCTT+TGG | 0.220550 | 3_2:-70599473 | None:intergenic |
| TTCTCATTGGTTGGTTCTTT+GGG | 0.221209 | 3_2:-70599472 | None:intergenic |
| TCGAAGAAAGAGTATTTATT+TGG | 0.223648 | 3_2:+70598840 | Msa0421590:CDS |
| TGAGAATCTATTCAAGTCTT+TGG | 0.232577 | 3_2:+70599489 | Msa0421590:CDS |
| GCATTCTTGAAGATCCTTAT+AGG | 0.241455 | 3_2:-70599428 | None:intergenic |
| ATTAATATGGCTTCTTCTAT+TGG | 0.241934 | 3_2:+70598645 | Msa0421590:exon |
| AGAAGCCATATTAATTGATT+TGG | 0.245541 | 3_2:-70598637 | None:intergenic |
| TCTGTCCAAATCAATTAATA+TGG | 0.295797 | 3_2:+70598632 | Msa0421590:exon |
| CAATATAACGAAAACTGATA+TGG | 0.325555 | 3_2:-70599951 | None:intergenic |
| GTCTTTGGAACGCTGATGAT+TGG | 0.331629 | 3_2:+70599504 | Msa0421590:CDS |
| CACTCAGCAGGAATACCTTC+TGG | 0.340561 | 3_2:-70599746 | None:intergenic |
| CATTCTTGAAGATCCTTATA+GGG | 0.350905 | 3_2:-70599427 | None:intergenic |
| TAGTTGATAACATCCCTATA+AGG | 0.361735 | 3_2:+70599414 | Msa0421590:CDS |
| TATTACTTACATAATGTGTT+GGG | 0.366572 | 3_2:-70599309 | None:intergenic |
| TTGCGGTAGTAAGCTGTAAA+TGG | 0.368145 | 3_2:-70599569 | None:intergenic |
| GAGAACAACAATTCTACCTT+TGG | 0.383624 | 3_2:+70599240 | Msa0421590:CDS |
| ACCAAGACTTTGATCTAACT+TGG | 0.385781 | 3_2:+70598736 | Msa0421590:CDS |
| ATTGGTTGGTTCTTTGGGAA+TGG | 0.395735 | 3_2:-70599467 | None:intergenic |
| ATGCAACTCAAACTTGTTGC+TGG | 0.403109 | 3_2:+70598873 | Msa0421590:CDS |
| AGACTTGAATAGATTCTCAT+TGG | 0.409589 | 3_2:-70599485 | None:intergenic |
| TAGTCTCAATAGATACGAAC+AGG | 0.412845 | 3_2:-70599990 | None:intergenic |
| ATAAATACTCTTTCTTCGAT+TGG | 0.413180 | 3_2:-70598836 | None:intergenic |
| AGCAATGAACTTGATGCTTA+TGG | 0.415779 | 3_2:+70599653 | Msa0421590:CDS |
| CTTGTTGCTGGAAATTCTGC+TGG | 0.421705 | 3_2:+70598885 | Msa0421590:CDS |
| TTCAAGAATGCTGAATCAAT+TGG | 0.430099 | 3_2:+70599440 | Msa0421590:CDS |
| AGAGTAAGTGTGGAAGTTCT+TGG | 0.438651 | 3_2:-70599273 | None:intergenic |
| CTAGACAAAACCTCGGGCTC+TGG | 0.447506 | 3_2:+70598810 | Msa0421590:CDS |
| TCTTTGGAACGCTGATGATT+GGG | 0.453325 | 3_2:+70599505 | Msa0421590:CDS |
| TCCACACTTACTCTATCATC+TGG | 0.453939 | 3_2:+70599282 | Msa0421590:CDS |
| GTAAGCTGTAAATGGTGCTT+TGG | 0.464723 | 3_2:-70599561 | None:intergenic |
| TTGAATAGATTCTCATTGGT+TGG | 0.466553 | 3_2:-70599481 | None:intergenic |
| ATATTACTTACATAATGTGT+TGG | 0.469145 | 3_2:-70599310 | None:intergenic |
| AGTCATGATAATTAGCTCCT+TGG | 0.482305 | 3_2:+70598689 | Msa0421590:CDS |
| CTGCTGAGTGCAAGCGTCCA+AGG | 0.485478 | 3_2:+70599759 | Msa0421590:CDS |
| TCATTGATCTCTCAGAACCT+TGG | 0.486786 | 3_2:-70599776 | None:intergenic |
| ACTCAGCAGGAATACCTTCT+GGG | 0.494454 | 3_2:-70599745 | None:intergenic |
| AAGTGTGGAAGTTCTTGGTT+GGG | 0.498153 | 3_2:-70599268 | None:intergenic |
| CTTGGACGCTTGCACTCAGC+AGG | 0.499944 | 3_2:-70599758 | None:intergenic |
| TTGGGCTACAAGAGGTGGTT+TGG | 0.508778 | 3_2:+70599523 | Msa0421590:CDS |
| CCAAGACTTTGATCTAACTT+GGG | 0.509119 | 3_2:+70598737 | Msa0421590:CDS |
| ACGTTTGTATGAAGAATGTA+AGG | 0.516073 | 3_2:-70599194 | None:intergenic |
| CACCGTGCTAAGATATTCAA+TGG | 0.519496 | 3_2:+70598765 | Msa0421590:CDS |
| CCCAAGTTAGATCAAAGTCT+TGG | 0.522663 | 3_2:-70598737 | None:intergenic |
| GGCATGAACAATATGCTGAT+TGG | 0.535335 | 3_2:+70598666 | Msa0421590:CDS |
| AAATCTATTTCATCATGAGT+TGG | 0.536081 | 3_2:-70599143 | None:intergenic |
| GAGTTCTTGGGAAATGTTAG+CGG | 0.540045 | 3_2:+70599167 | Msa0421590:CDS |
| AGAACCGTTATAAAATAAGA+TGG | 0.542218 | 3_2:-70599816 | None:intergenic |
| ATGGTAGAAGAAGATTGAGA+TGG | 0.542822 | 3_2:+70599672 | Msa0421590:CDS |
| TAAGTGTGGAAGTTCTTGGT+TGG | 0.544799 | 3_2:-70599269 | None:intergenic |
| GTGGTTTGGTGAAAACTGAT+TGG | 0.548484 | 3_2:+70599537 | Msa0421590:CDS |
| TGCAGAATCAGAGAAGGAAG+TGG | 0.555907 | 3_2:-70599624 | None:intergenic |
| ACTCAGTAGCTTTGAAATTG+CGG | 0.559212 | 3_2:-70599586 | None:intergenic |
| AACGAAAACTGATATGGAAG+TGG | 0.564414 | 3_2:-70599945 | None:intergenic |
| ATTACTTACATAATGTGTTG+GGG | 0.569004 | 3_2:-70599308 | None:intergenic |
| CGATTGGAAGCCAGAGCCCG+AGG | 0.573236 | 3_2:-70598820 | None:intergenic |
| ACTGATATGGAAGTGGTACA+AGG | 0.578583 | 3_2:-70599938 | None:intergenic |
| GATGATTGGGCTACAAGAGG+TGG | 0.583367 | 3_2:+70599518 | Msa0421590:CDS |
| TCCAGATGATAGAGTAAGTG+TGG | 0.584360 | 3_2:-70599283 | None:intergenic |
| AGCAGAACATGTAGCTACCA+AGG | 0.586171 | 3_2:-70598706 | None:intergenic |
| TGGTAGAAGAAGATTGAGAT+GGG | 0.586469 | 3_2:+70599673 | Msa0421590:CDS |
| TCTTGGTTGGGTCAAACCAA+AGG | 0.586504 | 3_2:-70599256 | None:intergenic |
| CTTTCTCTAGACAAAACCTC+GGG | 0.590397 | 3_2:+70598804 | Msa0421590:CDS |
| CTGCATTGCAGAATCAGAGA+AGG | 0.608965 | 3_2:-70599630 | None:intergenic |
| TCTTTCTCTAGACAAAACCT+CGG | 0.610000 | 3_2:+70598803 | Msa0421590:CDS |
| GAAGGAAGTGGAAGAGACAG+AGG | 0.615542 | 3_2:-70599612 | None:intergenic |
| CAAGACTTTGATCTAACTTG+GGG | 0.623881 | 3_2:+70598738 | Msa0421590:CDS |
| ATCATAATAAATTAAAACAG+TGG | 0.628762 | 3_2:-70599860 | None:intergenic |
| CACCATTGAATATCTTAGCA+CGG | 0.635606 | 3_2:-70598767 | None:intergenic |
| GCTGATGATTGGGCTACAAG+AGG | 0.647339 | 3_2:+70599515 | Msa0421590:CDS |
| GATCTTAAGCGATTCCCAGA+AGG | 0.649786 | 3_2:+70599731 | Msa0421590:CDS |
| CGTGCTAAGATATTCAATGG+TGG | 0.692895 | 3_2:+70598768 | Msa0421590:CDS |
| ATGGTGCAGTTGTCATCACA+AGG | 0.694897 | 3_2:+70599119 | Msa0421590:intron |
| AGTCTCAATAGATACGAACA+GGG | 0.741708 | 3_2:-70599989 | None:intergenic |
| CATTGAATATCTTAGCACGG+TGG | 0.785980 | 3_2:-70598764 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAAATAAAGTTACTTT+TGG | - | chr3_2:70598998-70599017 | None:intergenic | 10.0% |
| !!! | ATTTTAAATAAAGTTACTTT+TGG | - | chr3_2:70598998-70599017 | None:intergenic | 10.0% |
| !! | ATCATAATAAATTAAAACAG+TGG | - | chr3_2:70599863-70599882 | None:intergenic | 15.0% |
| !!! | TATATTCCTCTATATTTTTT+TGG | + | chr3_2:70599895-70599914 | Msa0421590:three_prime_UTR | 15.0% |
| !! | AAATATTAATGTAATTGTTG+TGG | - | chr3_2:70598582-70598601 | None:intergenic | 15.0% |
| !! | ATCATAATAAATTAAAACAG+TGG | - | chr3_2:70599863-70599882 | None:intergenic | 15.0% |
| !!! | TATATTCCTCTATATTTTTT+TGG | + | chr3_2:70599895-70599914 | Msa0421590:three_prime_UTR | 15.0% |
| !! | AATATATGGTATACTATATG+AGG | - | chr3_2:70598964-70598983 | None:intergenic | 20.0% |
| !! | TGGAAATGAATTAGAATATA+TGG | - | chr3_2:70598978-70598997 | None:intergenic | 20.0% |
| !!! | TTTTGTATTGTGGTAAATAA+CGG | + | chr3_2:70599082-70599101 | Msa0421590:intron | 20.0% |
| !! | TATTACTTACATAATGTGTT+GGG | - | chr3_2:70599312-70599331 | None:intergenic | 20.0% |
| !! | ATATTACTTACATAATGTGT+TGG | - | chr3_2:70599313-70599332 | None:intergenic | 20.0% |
| !!! | ATAGCCATCTTATTTTATAA+CGG | + | chr3_2:70599812-70599831 | Msa0421590:three_prime_UTR | 20.0% |
| !! | AATATATGGTATACTATATG+AGG | - | chr3_2:70598964-70598983 | None:intergenic | 20.0% |
| !! | TGGAAATGAATTAGAATATA+TGG | - | chr3_2:70598978-70598997 | None:intergenic | 20.0% |
| !!! | TTTTGTATTGTGGTAAATAA+CGG | + | chr3_2:70599082-70599101 | Msa0421590:intron | 20.0% |
| !! | TATTACTTACATAATGTGTT+GGG | - | chr3_2:70599312-70599331 | None:intergenic | 20.0% |
| !! | ATATTACTTACATAATGTGT+TGG | - | chr3_2:70599313-70599332 | None:intergenic | 20.0% |
| !!! | ATAGCCATCTTATTTTATAA+CGG | + | chr3_2:70599812-70599831 | Msa0421590:three_prime_UTR | 20.0% |
| ! | TCTGTCCAAATCAATTAATA+TGG | + | chr3_2:70598632-70598651 | Msa0421590:exon | 25.0% |
| ! | AGAAGCCATATTAATTGATT+TGG | - | chr3_2:70598640-70598659 | None:intergenic | 25.0% |
| ! | ATTAATATGGCTTCTTCTAT+TGG | + | chr3_2:70598645-70598664 | Msa0421590:exon | 25.0% |
| ! | ATAAATACTCTTTCTTCGAT+TGG | - | chr3_2:70598839-70598858 | None:intergenic | 25.0% |
| !!! | TCGAAGAAAGAGTATTTATT+TGG | + | chr3_2:70598840-70598859 | Msa0421590:CDS | 25.0% |
| ! | AAATCTATTTCATCATGAGT+TGG | - | chr3_2:70599146-70599165 | None:intergenic | 25.0% |
| !!! | TGAAATAGATTTTGAGTTCT+TGG | + | chr3_2:70599154-70599173 | Msa0421590:CDS | 25.0% |
| !!! | GAAATAGATTTTGAGTTCTT+GGG | + | chr3_2:70599155-70599174 | Msa0421590:CDS | 25.0% |
| ! | ATTACTTACATAATGTGTTG+GGG | - | chr3_2:70599311-70599330 | None:intergenic | 25.0% |
| ! | AGAACCGTTATAAAATAAGA+TGG | - | chr3_2:70599819-70599838 | None:intergenic | 25.0% |
| !!! | ATTCCTCTATATTTTTTTGG+TGG | + | chr3_2:70599898-70599917 | Msa0421590:three_prime_UTR | 25.0% |
| ! | TAACCACCAAAAAAATATAG+AGG | - | chr3_2:70599904-70599923 | None:intergenic | 25.0% |
| ! | CAATATAACGAAAACTGATA+TGG | - | chr3_2:70599954-70599973 | None:intergenic | 25.0% |
| ! | TCTGTCCAAATCAATTAATA+TGG | + | chr3_2:70598632-70598651 | Msa0421590:exon | 25.0% |
| ! | AGAAGCCATATTAATTGATT+TGG | - | chr3_2:70598640-70598659 | None:intergenic | 25.0% |
| ! | ATTAATATGGCTTCTTCTAT+TGG | + | chr3_2:70598645-70598664 | Msa0421590:exon | 25.0% |
| ! | ATAAATACTCTTTCTTCGAT+TGG | - | chr3_2:70598839-70598858 | None:intergenic | 25.0% |
| !!! | TCGAAGAAAGAGTATTTATT+TGG | + | chr3_2:70598840-70598859 | Msa0421590:CDS | 25.0% |
| ! | AAATCTATTTCATCATGAGT+TGG | - | chr3_2:70599146-70599165 | None:intergenic | 25.0% |
| !!! | TGAAATAGATTTTGAGTTCT+TGG | + | chr3_2:70599154-70599173 | Msa0421590:CDS | 25.0% |
| !!! | GAAATAGATTTTGAGTTCTT+GGG | + | chr3_2:70599155-70599174 | Msa0421590:CDS | 25.0% |
| ! | ATTACTTACATAATGTGTTG+GGG | - | chr3_2:70599311-70599330 | None:intergenic | 25.0% |
| ! | AGAACCGTTATAAAATAAGA+TGG | - | chr3_2:70599819-70599838 | None:intergenic | 25.0% |
| !!! | ATTCCTCTATATTTTTTTGG+TGG | + | chr3_2:70599898-70599917 | Msa0421590:three_prime_UTR | 25.0% |
| ! | TAACCACCAAAAAAATATAG+AGG | - | chr3_2:70599904-70599923 | None:intergenic | 25.0% |
| ! | CAATATAACGAAAACTGATA+TGG | - | chr3_2:70599954-70599973 | None:intergenic | 25.0% |
| CTATATGAGGAAGTAAAGAA+AGG | - | chr3_2:70598951-70598970 | None:intergenic | 30.0% | |
| ! | TTGCTTCTTCTTTTGTATTG+TGG | + | chr3_2:70599072-70599091 | Msa0421590:intron | 30.0% |
| AACGGTACTATATGCATATA+TGG | + | chr3_2:70599100-70599119 | Msa0421590:intron | 30.0% | |
| ACGTTTGTATGAAGAATGTA+AGG | - | chr3_2:70599197-70599216 | None:intergenic | 30.0% | |
| !! | TAGTTATACGAACTTGTTAG+CGG | - | chr3_2:70599382-70599401 | None:intergenic | 30.0% |
| !! | TAGTTGATAACATCCCTATA+AGG | + | chr3_2:70599414-70599433 | Msa0421590:CDS | 30.0% |
| CATTCTTGAAGATCCTTATA+GGG | - | chr3_2:70599430-70599449 | None:intergenic | 30.0% | |
| TTCAAGAATGCTGAATCAAT+TGG | + | chr3_2:70599440-70599459 | Msa0421590:CDS | 30.0% | |
| TTGAATAGATTCTCATTGGT+TGG | - | chr3_2:70599484-70599503 | None:intergenic | 30.0% | |
| AGACTTGAATAGATTCTCAT+TGG | - | chr3_2:70599488-70599507 | None:intergenic | 30.0% | |
| TGAGAATCTATTCAAGTCTT+TGG | + | chr3_2:70599489-70599508 | Msa0421590:CDS | 30.0% | |
| CTATATGAGGAAGTAAAGAA+AGG | - | chr3_2:70598951-70598970 | None:intergenic | 30.0% | |
| ! | TTGCTTCTTCTTTTGTATTG+TGG | + | chr3_2:70599072-70599091 | Msa0421590:intron | 30.0% |
| AACGGTACTATATGCATATA+TGG | + | chr3_2:70599100-70599119 | Msa0421590:intron | 30.0% | |
| ACGTTTGTATGAAGAATGTA+AGG | - | chr3_2:70599197-70599216 | None:intergenic | 30.0% | |
| !! | TAGTTATACGAACTTGTTAG+CGG | - | chr3_2:70599382-70599401 | None:intergenic | 30.0% |
| !! | TAGTTGATAACATCCCTATA+AGG | + | chr3_2:70599414-70599433 | Msa0421590:CDS | 30.0% |
| CATTCTTGAAGATCCTTATA+GGG | - | chr3_2:70599430-70599449 | None:intergenic | 30.0% | |
| TTCAAGAATGCTGAATCAAT+TGG | + | chr3_2:70599440-70599459 | Msa0421590:CDS | 30.0% | |
| TTGAATAGATTCTCATTGGT+TGG | - | chr3_2:70599484-70599503 | None:intergenic | 30.0% | |
| AGACTTGAATAGATTCTCAT+TGG | - | chr3_2:70599488-70599507 | None:intergenic | 30.0% | |
| TGAGAATCTATTCAAGTCTT+TGG | + | chr3_2:70599489-70599508 | Msa0421590:CDS | 30.0% | |
| AGTCATGATAATTAGCTCCT+TGG | + | chr3_2:70598689-70598708 | Msa0421590:CDS | 35.0% | |
| ACCAAGACTTTGATCTAACT+TGG | + | chr3_2:70598736-70598755 | Msa0421590:CDS | 35.0% | |
| CCAAGACTTTGATCTAACTT+GGG | + | chr3_2:70598737-70598756 | Msa0421590:CDS | 35.0% | |
| CAAGACTTTGATCTAACTTG+GGG | + | chr3_2:70598738-70598757 | Msa0421590:CDS | 35.0% | |
| CACCATTGAATATCTTAGCA+CGG | - | chr3_2:70598770-70598789 | None:intergenic | 35.0% | |
| TCTTTCTCTAGACAAAACCT+CGG | + | chr3_2:70598803-70598822 | Msa0421590:CDS | 35.0% | |
| ! | CATACAAACGTGTTTTCTCA+AGG | + | chr3_2:70599206-70599225 | Msa0421590:CDS | 35.0% |
| GAGAACAACAATTCTACCTT+TGG | + | chr3_2:70599240-70599259 | Msa0421590:CDS | 35.0% | |
| GCATTCTTGAAGATCCTTAT+AGG | - | chr3_2:70599431-70599450 | None:intergenic | 35.0% | |
| ! | TTCTCATTGGTTGGTTCTTT+GGG | - | chr3_2:70599475-70599494 | None:intergenic | 35.0% |
| ! | ATTCTCATTGGTTGGTTCTT+TGG | - | chr3_2:70599476-70599495 | None:intergenic | 35.0% |
| !! | ACTCAGTAGCTTTGAAATTG+CGG | - | chr3_2:70599589-70599608 | None:intergenic | 35.0% |
| AGCAATGAACTTGATGCTTA+TGG | + | chr3_2:70599653-70599672 | Msa0421590:CDS | 35.0% | |
| ATGGTAGAAGAAGATTGAGA+TGG | + | chr3_2:70599672-70599691 | Msa0421590:CDS | 35.0% | |
| TGGTAGAAGAAGATTGAGAT+GGG | + | chr3_2:70599673-70599692 | Msa0421590:CDS | 35.0% | |
| AACGAAAACTGATATGGAAG+TGG | - | chr3_2:70599948-70599967 | None:intergenic | 35.0% | |
| AGTCTCAATAGATACGAACA+GGG | - | chr3_2:70599992-70600011 | None:intergenic | 35.0% | |
| TAGTCTCAATAGATACGAAC+AGG | - | chr3_2:70599993-70600012 | None:intergenic | 35.0% | |
| AGTCATGATAATTAGCTCCT+TGG | + | chr3_2:70598689-70598708 | Msa0421590:CDS | 35.0% | |
| ACCAAGACTTTGATCTAACT+TGG | + | chr3_2:70598736-70598755 | Msa0421590:CDS | 35.0% | |
| CCAAGACTTTGATCTAACTT+GGG | + | chr3_2:70598737-70598756 | Msa0421590:CDS | 35.0% | |
| CAAGACTTTGATCTAACTTG+GGG | + | chr3_2:70598738-70598757 | Msa0421590:CDS | 35.0% | |
| CACCATTGAATATCTTAGCA+CGG | - | chr3_2:70598770-70598789 | None:intergenic | 35.0% | |
| TCTTTCTCTAGACAAAACCT+CGG | + | chr3_2:70598803-70598822 | Msa0421590:CDS | 35.0% | |
| ! | CATACAAACGTGTTTTCTCA+AGG | + | chr3_2:70599206-70599225 | Msa0421590:CDS | 35.0% |
| GAGAACAACAATTCTACCTT+TGG | + | chr3_2:70599240-70599259 | Msa0421590:CDS | 35.0% | |
| GCATTCTTGAAGATCCTTAT+AGG | - | chr3_2:70599431-70599450 | None:intergenic | 35.0% | |
| ! | TTCTCATTGGTTGGTTCTTT+GGG | - | chr3_2:70599475-70599494 | None:intergenic | 35.0% |
| ! | ATTCTCATTGGTTGGTTCTT+TGG | - | chr3_2:70599476-70599495 | None:intergenic | 35.0% |
| !! | ACTCAGTAGCTTTGAAATTG+CGG | - | chr3_2:70599589-70599608 | None:intergenic | 35.0% |
| AGCAATGAACTTGATGCTTA+TGG | + | chr3_2:70599653-70599672 | Msa0421590:CDS | 35.0% | |
| ATGGTAGAAGAAGATTGAGA+TGG | + | chr3_2:70599672-70599691 | Msa0421590:CDS | 35.0% | |
| TGGTAGAAGAAGATTGAGAT+GGG | + | chr3_2:70599673-70599692 | Msa0421590:CDS | 35.0% | |
| AACGAAAACTGATATGGAAG+TGG | - | chr3_2:70599948-70599967 | None:intergenic | 35.0% | |
| AGTCTCAATAGATACGAACA+GGG | - | chr3_2:70599992-70600011 | None:intergenic | 35.0% | |
| TAGTCTCAATAGATACGAAC+AGG | - | chr3_2:70599993-70600012 | None:intergenic | 35.0% | |
| GGCATGAACAATATGCTGAT+TGG | + | chr3_2:70598666-70598685 | Msa0421590:CDS | 40.0% | |
| CCCAAGTTAGATCAAAGTCT+TGG | - | chr3_2:70598740-70598759 | None:intergenic | 40.0% | |
| CATTGAATATCTTAGCACGG+TGG | - | chr3_2:70598767-70598786 | None:intergenic | 40.0% | |
| CACCGTGCTAAGATATTCAA+TGG | + | chr3_2:70598765-70598784 | Msa0421590:CDS | 40.0% | |
| CGTGCTAAGATATTCAATGG+TGG | + | chr3_2:70598768-70598787 | Msa0421590:CDS | 40.0% | |
| CTTTCTCTAGACAAAACCTC+GGG | + | chr3_2:70598804-70598823 | Msa0421590:CDS | 40.0% | |
| !! | ATGCAACTCAAACTTGTTGC+TGG | + | chr3_2:70598873-70598892 | Msa0421590:CDS | 40.0% |
| GAGTTCTTGGGAAATGTTAG+CGG | + | chr3_2:70599167-70599186 | Msa0421590:CDS | 40.0% | |
| ! | AACGTGTTTTCTCAAGGCAA+AGG | + | chr3_2:70599212-70599231 | Msa0421590:CDS | 40.0% |
| AAGTGTGGAAGTTCTTGGTT+GGG | - | chr3_2:70599271-70599290 | None:intergenic | 40.0% | |
| TAAGTGTGGAAGTTCTTGGT+TGG | - | chr3_2:70599272-70599291 | None:intergenic | 40.0% | |
| AGAGTAAGTGTGGAAGTTCT+TGG | - | chr3_2:70599276-70599295 | None:intergenic | 40.0% | |
| TCCACACTTACTCTATCATC+TGG | + | chr3_2:70599282-70599301 | Msa0421590:CDS | 40.0% | |
| TCCAGATGATAGAGTAAGTG+TGG | - | chr3_2:70599286-70599305 | None:intergenic | 40.0% | |
| ! | ATTGGTTGGTTCTTTGGGAA+TGG | - | chr3_2:70599470-70599489 | None:intergenic | 40.0% |
| !! | TCTTTGGAACGCTGATGATT+GGG | + | chr3_2:70599505-70599524 | Msa0421590:CDS | 40.0% |
| !! | GTGGTTTGGTGAAAACTGAT+TGG | + | chr3_2:70599537-70599556 | Msa0421590:CDS | 40.0% |
| GTAAGCTGTAAATGGTGCTT+TGG | - | chr3_2:70599564-70599583 | None:intergenic | 40.0% | |
| TTGCGGTAGTAAGCTGTAAA+TGG | - | chr3_2:70599572-70599591 | None:intergenic | 40.0% | |
| TCATTGATCTCTCAGAACCT+TGG | - | chr3_2:70599779-70599798 | None:intergenic | 40.0% | |
| ACTGATATGGAAGTGGTACA+AGG | - | chr3_2:70599941-70599960 | None:intergenic | 40.0% | |
| GGCATGAACAATATGCTGAT+TGG | + | chr3_2:70598666-70598685 | Msa0421590:CDS | 40.0% | |
| CCCAAGTTAGATCAAAGTCT+TGG | - | chr3_2:70598740-70598759 | None:intergenic | 40.0% | |
| CATTGAATATCTTAGCACGG+TGG | - | chr3_2:70598767-70598786 | None:intergenic | 40.0% | |
| CACCGTGCTAAGATATTCAA+TGG | + | chr3_2:70598765-70598784 | Msa0421590:CDS | 40.0% | |
| CGTGCTAAGATATTCAATGG+TGG | + | chr3_2:70598768-70598787 | Msa0421590:CDS | 40.0% | |
| CTTTCTCTAGACAAAACCTC+GGG | + | chr3_2:70598804-70598823 | Msa0421590:CDS | 40.0% | |
| !! | ATGCAACTCAAACTTGTTGC+TGG | + | chr3_2:70598873-70598892 | Msa0421590:CDS | 40.0% |
| GAGTTCTTGGGAAATGTTAG+CGG | + | chr3_2:70599167-70599186 | Msa0421590:CDS | 40.0% | |
| ! | AACGTGTTTTCTCAAGGCAA+AGG | + | chr3_2:70599212-70599231 | Msa0421590:CDS | 40.0% |
| AAGTGTGGAAGTTCTTGGTT+GGG | - | chr3_2:70599271-70599290 | None:intergenic | 40.0% | |
| TAAGTGTGGAAGTTCTTGGT+TGG | - | chr3_2:70599272-70599291 | None:intergenic | 40.0% | |
| AGAGTAAGTGTGGAAGTTCT+TGG | - | chr3_2:70599276-70599295 | None:intergenic | 40.0% | |
| TCCACACTTACTCTATCATC+TGG | + | chr3_2:70599282-70599301 | Msa0421590:CDS | 40.0% | |
| TCCAGATGATAGAGTAAGTG+TGG | - | chr3_2:70599286-70599305 | None:intergenic | 40.0% | |
| ! | ATTGGTTGGTTCTTTGGGAA+TGG | - | chr3_2:70599470-70599489 | None:intergenic | 40.0% |
| !! | TCTTTGGAACGCTGATGATT+GGG | + | chr3_2:70599505-70599524 | Msa0421590:CDS | 40.0% |
| !! | GTGGTTTGGTGAAAACTGAT+TGG | + | chr3_2:70599537-70599556 | Msa0421590:CDS | 40.0% |
| GTAAGCTGTAAATGGTGCTT+TGG | - | chr3_2:70599564-70599583 | None:intergenic | 40.0% | |
| TTGCGGTAGTAAGCTGTAAA+TGG | - | chr3_2:70599572-70599591 | None:intergenic | 40.0% | |
| TCATTGATCTCTCAGAACCT+TGG | - | chr3_2:70599779-70599798 | None:intergenic | 40.0% | |
| ACTGATATGGAAGTGGTACA+AGG | - | chr3_2:70599941-70599960 | None:intergenic | 40.0% | |
| AGCAGAACATGTAGCTACCA+AGG | - | chr3_2:70598709-70598728 | None:intergenic | 45.0% | |
| CTTGTTGCTGGAAATTCTGC+TGG | + | chr3_2:70598885-70598904 | Msa0421590:CDS | 45.0% | |
| ATGGTGCAGTTGTCATCACA+AGG | + | chr3_2:70599119-70599138 | Msa0421590:intron | 45.0% | |
| TCTTGGTTGGGTCAAACCAA+AGG | - | chr3_2:70599259-70599278 | None:intergenic | 45.0% | |
| !! | GTCTTTGGAACGCTGATGAT+TGG | + | chr3_2:70599504-70599523 | Msa0421590:CDS | 45.0% |
| TGCAGAATCAGAGAAGGAAG+TGG | - | chr3_2:70599627-70599646 | None:intergenic | 45.0% | |
| CTGCATTGCAGAATCAGAGA+AGG | - | chr3_2:70599633-70599652 | None:intergenic | 45.0% | |
| GATCTTAAGCGATTCCCAGA+AGG | + | chr3_2:70599731-70599750 | Msa0421590:CDS | 45.0% | |
| ACTCAGCAGGAATACCTTCT+GGG | - | chr3_2:70599748-70599767 | None:intergenic | 45.0% | |
| AGCAGAACATGTAGCTACCA+AGG | - | chr3_2:70598709-70598728 | None:intergenic | 45.0% | |
| CTTGTTGCTGGAAATTCTGC+TGG | + | chr3_2:70598885-70598904 | Msa0421590:CDS | 45.0% | |
| ATGGTGCAGTTGTCATCACA+AGG | + | chr3_2:70599119-70599138 | Msa0421590:intron | 45.0% | |
| TCTTGGTTGGGTCAAACCAA+AGG | - | chr3_2:70599259-70599278 | None:intergenic | 45.0% | |
| !! | GTCTTTGGAACGCTGATGAT+TGG | + | chr3_2:70599504-70599523 | Msa0421590:CDS | 45.0% |
| TGCAGAATCAGAGAAGGAAG+TGG | - | chr3_2:70599627-70599646 | None:intergenic | 45.0% | |
| CTGCATTGCAGAATCAGAGA+AGG | - | chr3_2:70599633-70599652 | None:intergenic | 45.0% | |
| GATCTTAAGCGATTCCCAGA+AGG | + | chr3_2:70599731-70599750 | Msa0421590:CDS | 45.0% | |
| ACTCAGCAGGAATACCTTCT+GGG | - | chr3_2:70599748-70599767 | None:intergenic | 45.0% | |
| GCTGATGATTGGGCTACAAG+AGG | + | chr3_2:70599515-70599534 | Msa0421590:CDS | 50.0% | |
| GATGATTGGGCTACAAGAGG+TGG | + | chr3_2:70599518-70599537 | Msa0421590:CDS | 50.0% | |
| TTGGGCTACAAGAGGTGGTT+TGG | + | chr3_2:70599523-70599542 | Msa0421590:CDS | 50.0% | |
| GAAGGAAGTGGAAGAGACAG+AGG | - | chr3_2:70599615-70599634 | None:intergenic | 50.0% | |
| CACTCAGCAGGAATACCTTC+TGG | - | chr3_2:70599749-70599768 | None:intergenic | 50.0% | |
| GCTGATGATTGGGCTACAAG+AGG | + | chr3_2:70599515-70599534 | Msa0421590:CDS | 50.0% | |
| GATGATTGGGCTACAAGAGG+TGG | + | chr3_2:70599518-70599537 | Msa0421590:CDS | 50.0% | |
| TTGGGCTACAAGAGGTGGTT+TGG | + | chr3_2:70599523-70599542 | Msa0421590:CDS | 50.0% | |
| GAAGGAAGTGGAAGAGACAG+AGG | - | chr3_2:70599615-70599634 | None:intergenic | 50.0% | |
| CACTCAGCAGGAATACCTTC+TGG | - | chr3_2:70599749-70599768 | None:intergenic | 50.0% | |
| CTAGACAAAACCTCGGGCTC+TGG | + | chr3_2:70598810-70598829 | Msa0421590:CDS | 55.0% | |
| CTAGACAAAACCTCGGGCTC+TGG | + | chr3_2:70598810-70598829 | Msa0421590:CDS | 55.0% | |
| CTTGGACGCTTGCACTCAGC+AGG | - | chr3_2:70599761-70599780 | None:intergenic | 60.0% | |
| CTGCTGAGTGCAAGCGTCCA+AGG | + | chr3_2:70599759-70599778 | Msa0421590:CDS | 60.0% | |
| CTTGGACGCTTGCACTCAGC+AGG | - | chr3_2:70599761-70599780 | None:intergenic | 60.0% | |
| CTGCTGAGTGCAAGCGTCCA+AGG | + | chr3_2:70599759-70599778 | Msa0421590:CDS | 60.0% | |
| CGATTGGAAGCCAGAGCCCG+AGG | - | chr3_2:70598823-70598842 | None:intergenic | 65.0% | |
| CGATTGGAAGCCAGAGCCCG+AGG | - | chr3_2:70598823-70598842 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 70598580 | 70600020 | 70598580 | ID=Msa0421590;Name=Msa0421590 |
| chr3_2 | mRNA | 70598580 | 70600020 | 70598580 | ID=Msa0421590-mRNA-1;Parent=Msa0421590;Name=Msa0421590-mRNA-1;_AED=0.27;_eAED=0.27;_QI=71|1|1|1|1|1|3|233|282 |
| chr3_2 | exon | 70598580 | 70598926 | 70598580 | ID=Msa0421590-mRNA-1:exon:17016;Parent=Msa0421590-mRNA-1 |
| chr3_2 | exon | 70599128 | 70599321 | 70599128 | ID=Msa0421590-mRNA-1:exon:17017;Parent=Msa0421590-mRNA-1 |
| chr3_2 | exon | 70599409 | 70600020 | 70599409 | ID=Msa0421590-mRNA-1:exon:17018;Parent=Msa0421590-mRNA-1 |
| chr3_2 | five_prime_UTR | 70598580 | 70598650 | 70598580 | ID=Msa0421590-mRNA-1:five_prime_utr;Parent=Msa0421590-mRNA-1 |
| chr3_2 | CDS | 70598651 | 70598926 | 70598651 | ID=Msa0421590-mRNA-1:cds;Parent=Msa0421590-mRNA-1 |
| chr3_2 | CDS | 70599128 | 70599321 | 70599128 | ID=Msa0421590-mRNA-1:cds;Parent=Msa0421590-mRNA-1 |
| chr3_2 | CDS | 70599409 | 70599787 | 70599409 | ID=Msa0421590-mRNA-1:cds;Parent=Msa0421590-mRNA-1 |
| chr3_2 | three_prime_UTR | 70599788 | 70600020 | 70599788 | ID=Msa0421590-mRNA-1:three_prime_utr;Parent=Msa0421590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
