Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373060 | XP_003601714.1 | 98.582 | 282 | 4 | 0 | 1 | 282 | 1 | 282 | 0.0 | 583 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373060 | sp|P35694|XTH2_SOYBN | 83.099 | 284 | 42 | 2 | 1 | 279 | 1 | 283 | 1.18e-176 | 491 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373060 | G7JAU8 | 98.582 | 282 | 4 | 0 | 1 | 282 | 1 | 282 | 0.0 | 583 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046970 | Msa0373060 | 0.828756 | 7.532527e-55 | -8.615850e-47 |
| Msa0091090 | Msa0373060 | -0.802817 | 4.685536e-49 | -8.615850e-47 |
| Msa0183200 | Msa0373060 | -0.804442 | 2.155518e-49 | -8.615850e-47 |
| Msa0198210 | Msa0373060 | 0.809405 | 1.922917e-50 | -8.615850e-47 |
| Msa0207680 | Msa0373060 | 0.849093 | 4.034490e-60 | -8.615850e-47 |
| Msa0207690 | Msa0373060 | 0.819218 | 1.303193e-52 | -8.615850e-47 |
| Msa0209360 | Msa0373060 | 0.845044 | 5.191717e-59 | -8.615850e-47 |
| Msa0371510 | Msa0373060 | 0.847061 | 1.467136e-59 | -8.615850e-47 |
| Msa0373050 | Msa0373060 | 0.968603 | 6.515162e-129 | -8.615850e-47 |
| Msa0373060 | Msa0380980 | 0.802650 | 5.072281e-49 | -8.615850e-47 |
| Msa0373060 | Msa0404060 | -0.806327 | 8.682742e-50 | -8.615850e-47 |
| Msa0373060 | Msa0419730 | 0.824325 | 8.581315e-54 | -8.615850e-47 |
| Msa0373060 | Msa0419860 | 0.828049 | 1.115604e-54 | -8.615850e-47 |
| Msa0373060 | Msa0421580 | 0.975863 | 9.713597e-141 | -8.615850e-47 |
| Msa0373060 | Msa0421590 | 0.885007 | 1.178222e-71 | -8.615850e-47 |
| Msa0373060 | Msa0450030 | 0.837975 | 3.784540e-57 | -8.615850e-47 |
| Msa0373060 | Msa0467590 | 0.885767 | 6.121090e-72 | -8.615850e-47 |
| Msa0373060 | Msa0467600 | 0.987308 | 8.586809e-170 | -8.615850e-47 |
| Msa0373060 | Msa0555280 | 0.832384 | 9.747631e-56 | -8.615850e-47 |
| Msa0373060 | Msa0573650 | 0.852258 | 5.195017e-61 | -8.615850e-47 |
| Msa0373060 | Msa0575380 | 0.833907 | 4.072352e-56 | -8.615850e-47 |
| Msa0373060 | Msa0576180 | 0.836333 | 9.948521e-57 | -8.615850e-47 |
| Msa0373060 | Msa0581370 | 0.813310 | 2.731347e-51 | -8.615850e-47 |
| Msa0373060 | Msa0608820 | 0.823141 | 1.624969e-53 | -8.615850e-47 |
| Msa0373060 | Msa0627580 | 0.837412 | 5.278409e-57 | -8.615850e-47 |
| Msa0373060 | Msa0647320 | 0.860049 | 2.707472e-63 | -8.615850e-47 |
| Msa0373060 | Msa0690190 | 0.829041 | 6.426784e-55 | -8.615850e-47 |
| Msa0373060 | Msa0691610 | 0.817632 | 2.981563e-52 | -8.615850e-47 |
| Msa0373060 | Msa0707490 | 0.864501 | 1.161639e-64 | -8.615850e-47 |
| Msa0373060 | Msa0794030 | 0.800293 | 1.542906e-48 | -8.615850e-47 |
| Msa0373060 | Msa0930210 | 0.851681 | 7.575110e-61 | -8.615850e-47 |
| Msa0373060 | Msa1088150 | 0.933865 | 9.767900e-96 | -8.615850e-47 |
| Msa0373060 | Msa1088160 | 0.994282 | 5.407587e-206 | -8.615850e-47 |
| Msa0373060 | Msa1127910 | 0.803080 | 4.133916e-49 | -8.615850e-47 |
| Msa0373060 | Msa1175380 | 0.804933 | 1.702754e-49 | -8.615850e-47 |
| Msa0373060 | Msa1221290 | 0.803048 | 4.198707e-49 | -8.615850e-47 |
| Msa0373060 | Msa1236860 | -0.809712 | 1.652422e-50 | -8.615850e-47 |
| Msa0373060 | Msa1315760 | 0.811039 | 8.545427e-51 | -8.615850e-47 |
| Msa0373060 | Msa1337450 | 0.803069 | 4.155470e-49 | -8.615850e-47 |
| Msa0373060 | Msa1451000 | 0.874240 | 7.880862e-68 | -8.615850e-47 |
| Msa0242820 | Msa0373060 | 0.853169 | 2.854028e-61 | -8.615850e-47 |
| Msa0287640 | Msa0373060 | 0.842141 | 3.100212e-58 | -8.615850e-47 |
| Msa0287660 | Msa0373060 | 0.856700 | 2.694700e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373060 | MtrunA17_Chr3g0122031 | 98.582 | 282 | 4 | 0 | 1 | 282 | 1 | 282 | 0.0 | 583 |
| Msa0373060 | MtrunA17_Chr3g0122021 | 98.227 | 282 | 5 | 0 | 1 | 282 | 1 | 282 | 0.0 | 580 |
| Msa0373060 | MtrunA17_Chr8g0377841 | 86.245 | 269 | 35 | 2 | 10 | 277 | 14 | 281 | 5.66e-178 | 491 |
| Msa0373060 | MtrunA17_Chr8g0389641 | 80.851 | 282 | 17 | 2 | 1 | 281 | 1 | 246 | 1.13e-166 | 461 |
| Msa0373060 | MtrunA17_Chr4g0072611 | 72.426 | 272 | 67 | 2 | 14 | 278 | 11 | 281 | 6.47e-144 | 405 |
| Msa0373060 | MtrunA17_Chr7g0258911 | 72.593 | 270 | 68 | 1 | 14 | 277 | 10 | 279 | 7.08e-142 | 400 |
| Msa0373060 | MtrunA17_Chr4g0072671 | 72.285 | 267 | 64 | 1 | 21 | 277 | 19 | 285 | 1.53e-139 | 394 |
| Msa0373060 | MtrunA17_Chr4g0072601 | 63.958 | 283 | 96 | 1 | 1 | 277 | 1 | 283 | 3.72e-133 | 378 |
| Msa0373060 | MtrunA17_Chr2g0299061 | 65.468 | 278 | 85 | 1 | 11 | 277 | 9 | 286 | 1.86e-132 | 377 |
| Msa0373060 | MtrunA17_Chr4g0071341 | 67.681 | 263 | 78 | 1 | 22 | 277 | 19 | 281 | 4.16e-131 | 373 |
| Msa0373060 | MtrunA17_Chr4g0072681 | 73.516 | 219 | 47 | 2 | 70 | 277 | 25 | 243 | 1.70e-115 | 332 |
| Msa0373060 | MtrunA17_Chr5g0443391 | 52.465 | 284 | 132 | 2 | 1 | 281 | 1 | 284 | 1.51e-106 | 311 |
| Msa0373060 | MtrunA17_Chr7g0252631 | 52.740 | 292 | 126 | 3 | 1 | 281 | 1 | 291 | 1.99e-106 | 311 |
| Msa0373060 | MtrunA17_Chr7g0252621 | 52.069 | 290 | 127 | 3 | 1 | 279 | 1 | 289 | 9.30e-105 | 306 |
| Msa0373060 | MtrunA17_Chr6g0461731 | 51.712 | 292 | 123 | 4 | 7 | 281 | 24 | 314 | 1.60e-103 | 304 |
| Msa0373060 | MtrunA17_Chr7g0252601 | 50.342 | 292 | 133 | 3 | 1 | 281 | 1 | 291 | 9.01e-103 | 301 |
| Msa0373060 | MtrunA17_Chr6g0461761 | 51.027 | 292 | 131 | 3 | 1 | 281 | 1 | 291 | 1.06e-102 | 301 |
| Msa0373060 | MtrunA17_Chr6g0486581 | 49.291 | 282 | 128 | 3 | 14 | 282 | 9 | 288 | 2.01e-97 | 288 |
| Msa0373060 | MtrunA17_Chr3g0096651 | 51.351 | 259 | 119 | 2 | 26 | 279 | 28 | 284 | 2.28e-96 | 285 |
| Msa0373060 | MtrunA17_Chr4g0023961 | 49.286 | 280 | 122 | 5 | 14 | 277 | 13 | 288 | 7.16e-95 | 281 |
| Msa0373060 | MtrunA17_Chr2g0323161 | 47.797 | 295 | 128 | 7 | 1 | 279 | 4 | 288 | 2.40e-94 | 280 |
| Msa0373060 | MtrunA17_Chr1g0206681 | 47.810 | 274 | 133 | 2 | 17 | 282 | 25 | 296 | 7.38e-94 | 279 |
| Msa0373060 | MtrunA17_Chr4g0054431 | 48.387 | 279 | 135 | 4 | 6 | 277 | 11 | 287 | 1.26e-93 | 278 |
| Msa0373060 | MtrunA17_Chr4g0054451 | 48.000 | 275 | 135 | 3 | 10 | 277 | 16 | 289 | 1.57e-93 | 278 |
| Msa0373060 | MtrunA17_Chr1g0206081 | 44.604 | 278 | 142 | 3 | 11 | 277 | 18 | 294 | 5.79e-84 | 254 |
| Msa0373060 | MtrunA17_Chr8g0390201 | 53.500 | 200 | 83 | 3 | 93 | 282 | 15 | 214 | 4.92e-74 | 225 |
| Msa0373060 | MtrunA17_Chr8g0340001 | 45.763 | 236 | 113 | 4 | 52 | 277 | 1 | 231 | 1.00e-70 | 218 |
| Msa0373060 | MtrunA17_Chr7g0264731 | 41.569 | 255 | 133 | 5 | 25 | 268 | 34 | 283 | 7.02e-63 | 199 |
| Msa0373060 | MtrunA17_Chr2g0327411 | 40.684 | 263 | 137 | 6 | 18 | 268 | 46 | 301 | 4.12e-60 | 193 |
| Msa0373060 | MtrunA17_Chr4g0028221 | 41.603 | 262 | 136 | 6 | 27 | 277 | 49 | 304 | 4.43e-60 | 193 |
| Msa0373060 | MtrunA17_Chr1g0180451 | 39.773 | 264 | 142 | 6 | 25 | 277 | 37 | 294 | 5.96e-59 | 189 |
| Msa0373060 | MtrunA17_Chr2g0303861 | 38.610 | 259 | 142 | 7 | 28 | 278 | 29 | 278 | 6.16e-56 | 181 |
| Msa0373060 | MtrunA17_Chr8g0375981 | 36.782 | 261 | 153 | 5 | 28 | 277 | 31 | 290 | 6.11e-55 | 180 |
| Msa0373060 | MtrunA17_Chr1g0161951 | 37.931 | 261 | 149 | 6 | 28 | 277 | 33 | 291 | 1.67e-52 | 174 |
| Msa0373060 | MtrunA17_Chr5g0410621 | 36.090 | 266 | 152 | 7 | 28 | 277 | 42 | 305 | 1.53e-50 | 169 |
| Msa0373060 | MtrunA17_Chr8g0365231 | 35.338 | 266 | 149 | 8 | 32 | 278 | 50 | 311 | 3.56e-50 | 167 |
| Msa0373060 | MtrunA17_Chr4g0072641 | 64.167 | 120 | 35 | 1 | 158 | 277 | 37 | 148 | 7.54e-50 | 161 |
| Msa0373060 | MtrunA17_Chr7g0235541 | 42.365 | 203 | 101 | 5 | 75 | 265 | 1 | 199 | 8.84e-49 | 160 |
| Msa0373060 | MtrunA17_Chr2g0303721 | 34.921 | 252 | 144 | 6 | 28 | 271 | 30 | 269 | 1.91e-47 | 159 |
| Msa0373060 | MtrunA17_Chr8g0382041 | 34.601 | 263 | 157 | 5 | 28 | 277 | 34 | 294 | 2.28e-44 | 153 |
| Msa0373060 | MtrunA17_Chr4g0072631 | 60.000 | 70 | 27 | 1 | 7 | 75 | 9 | 78 | 1.29e-21 | 87.4 |
| Msa0373060 | MtrunA17_Chr8g0390181 | 46.809 | 94 | 45 | 2 | 5 | 95 | 2 | 93 | 1.47e-18 | 79.0 |
| Msa0373060 | MtrunA17_Chr8g0374231 | 41.176 | 102 | 51 | 3 | 184 | 277 | 1 | 101 | 8.01e-18 | 77.0 |
| Msa0373060 | MtrunA17_Chr8g0350711 | 32.558 | 172 | 108 | 5 | 50 | 219 | 54 | 219 | 1.67e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373060 | AT3G23730.1 | 72.028 | 286 | 69 | 2 | 7 | 281 | 5 | 290 | 2.40e-164 | 457 |
| Msa0373060 | AT4G14130.1 | 73.264 | 288 | 70 | 2 | 1 | 281 | 1 | 288 | 2.90e-163 | 455 |
| Msa0373060 | AT4G25810.1 | 65.455 | 275 | 87 | 1 | 11 | 277 | 9 | 283 | 1.45e-133 | 379 |
| Msa0373060 | AT4G30270.1 | 64.885 | 262 | 84 | 1 | 16 | 277 | 12 | 265 | 2.24e-129 | 368 |
| Msa0373060 | AT5G57550.1 | 65.370 | 257 | 86 | 1 | 25 | 278 | 27 | 283 | 5.09e-129 | 368 |
| Msa0373060 | AT5G57560.1 | 62.455 | 277 | 91 | 2 | 10 | 277 | 9 | 281 | 6.27e-129 | 368 |
| Msa0373060 | AT5G57530.1 | 63.258 | 264 | 81 | 2 | 25 | 277 | 24 | 282 | 6.45e-124 | 355 |
| Msa0373060 | AT5G57540.1 | 62.500 | 264 | 83 | 3 | 25 | 277 | 23 | 281 | 2.93e-122 | 351 |
| Msa0373060 | AT2G18800.1 | 57.857 | 280 | 99 | 2 | 17 | 277 | 17 | 296 | 6.05e-121 | 348 |
| Msa0373060 | AT4G25820.1 | 62.782 | 266 | 91 | 2 | 20 | 278 | 22 | 286 | 6.52e-120 | 345 |
| Msa0373060 | AT5G48070.1 | 57.934 | 271 | 111 | 2 | 10 | 277 | 11 | 281 | 6.46e-118 | 340 |
| Msa0373060 | AT4G30290.1 | 58.303 | 271 | 110 | 2 | 10 | 277 | 6 | 276 | 8.75e-110 | 319 |
| Msa0373060 | AT4G30280.1 | 57.778 | 270 | 111 | 2 | 11 | 277 | 12 | 281 | 2.46e-109 | 318 |
| Msa0373060 | AT1G65310.2 | 60.000 | 260 | 101 | 2 | 21 | 277 | 44 | 303 | 2.30e-108 | 316 |
| Msa0373060 | AT1G65310.1 | 60.000 | 260 | 101 | 2 | 21 | 277 | 22 | 281 | 2.46e-108 | 315 |
| Msa0373060 | AT5G13870.2 | 54.406 | 261 | 111 | 2 | 28 | 281 | 32 | 291 | 1.07e-101 | 299 |
| Msa0373060 | AT5G13870.1 | 54.406 | 261 | 111 | 2 | 28 | 281 | 32 | 291 | 1.07e-101 | 299 |
| Msa0373060 | AT5G13870.3 | 54.406 | 261 | 111 | 2 | 28 | 281 | 32 | 291 | 1.07e-101 | 299 |
| Msa0373060 | AT2G06850.1 | 52.281 | 285 | 122 | 3 | 10 | 281 | 11 | 294 | 7.95e-101 | 297 |
| Msa0373060 | AT4G03210.1 | 48.936 | 282 | 130 | 5 | 10 | 281 | 11 | 288 | 2.43e-96 | 285 |
| Msa0373060 | AT2G14620.1 | 46.181 | 288 | 140 | 2 | 10 | 282 | 12 | 299 | 8.64e-94 | 279 |
| Msa0373060 | AT2G06850.2 | 57.143 | 231 | 91 | 2 | 58 | 281 | 5 | 234 | 9.82e-93 | 274 |
| Msa0373060 | AT4G28850.1 | 47.902 | 286 | 133 | 5 | 10 | 282 | 10 | 292 | 1.03e-92 | 276 |
| Msa0373060 | AT5G65730.1 | 48.561 | 278 | 127 | 6 | 11 | 278 | 20 | 291 | 1.31e-91 | 273 |
| Msa0373060 | AT4G37800.1 | 48.120 | 266 | 126 | 4 | 21 | 277 | 27 | 289 | 7.69e-89 | 266 |
| Msa0373060 | AT4G03210.2 | 52.381 | 231 | 100 | 3 | 60 | 281 | 31 | 260 | 9.75e-87 | 260 |
| Msa0373060 | AT1G11545.1 | 45.357 | 280 | 139 | 4 | 11 | 277 | 21 | 299 | 2.52e-86 | 260 |
| Msa0373060 | AT2G14620.2 | 48.707 | 232 | 111 | 1 | 59 | 282 | 18 | 249 | 1.97e-82 | 248 |
| Msa0373060 | AT2G14620.3 | 49.327 | 223 | 105 | 1 | 68 | 282 | 16 | 238 | 2.54e-80 | 243 |
| Msa0373060 | AT4G13090.1 | 40.893 | 291 | 151 | 4 | 7 | 278 | 1 | 289 | 3.57e-75 | 231 |
| Msa0373060 | AT3G25050.1 | 41.313 | 259 | 139 | 3 | 28 | 277 | 35 | 289 | 3.28e-74 | 229 |
| Msa0373060 | AT4G13080.1 | 45.420 | 262 | 124 | 7 | 28 | 278 | 39 | 292 | 1.70e-72 | 224 |
| Msa0373060 | AT2G36870.1 | 42.857 | 266 | 135 | 6 | 25 | 279 | 40 | 299 | 2.83e-63 | 201 |
| Msa0373060 | AT3G44990.1 | 40.590 | 271 | 142 | 8 | 18 | 277 | 31 | 293 | 6.74e-58 | 187 |
| Msa0373060 | AT1G14720.1 | 34.783 | 299 | 170 | 7 | 7 | 281 | 4 | 301 | 1.97e-53 | 177 |
| Msa0373060 | AT1G32170.1 | 34.471 | 293 | 163 | 8 | 8 | 277 | 7 | 293 | 4.24e-53 | 176 |
| Msa0373060 | AT1G10550.1 | 36.029 | 272 | 139 | 8 | 32 | 277 | 47 | 309 | 4.60e-53 | 175 |
| Msa0373060 | AT2G01850.1 | 31.773 | 299 | 179 | 6 | 7 | 281 | 4 | 301 | 3.06e-50 | 169 |
| Msa0373060 | AT4G18990.1 | 34.601 | 263 | 140 | 7 | 50 | 282 | 62 | 322 | 1.69e-44 | 154 |
| Msa0373060 | AT3G48580.1 | 34.008 | 247 | 145 | 7 | 35 | 277 | 41 | 273 | 3.18e-43 | 149 |
| Msa0373060 | AT4G18990.2 | 33.755 | 237 | 121 | 8 | 77 | 282 | 17 | 248 | 4.27e-37 | 133 |
| Msa0373060 | AT3G48580.3 | 32.143 | 224 | 135 | 6 | 58 | 277 | 4 | 214 | 1.54e-36 | 130 |
| Msa0373060 | AT2G36870.2 | 43.262 | 141 | 70 | 3 | 25 | 157 | 40 | 178 | 2.57e-30 | 112 |
| Msa0373060 | AT3G48580.2 | 30.952 | 252 | 126 | 10 | 35 | 277 | 41 | 253 | 7.76e-28 | 108 |
Find 89 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGAGTGCGTTAGGGAAAT+TGG | 0.193986 | 3_1:+72022328 | None:intergenic |
| ATTCTCATTGGTTGGTTCTT+TGG | 0.220550 | 3_1:+72021018 | None:intergenic |
| TTCTCATTGGTTGGTTCTTT+GGG | 0.221209 | 3_1:+72021019 | None:intergenic |
| TCGAAGAAAGAGTATTTATT+TGG | 0.223648 | 3_1:-72021994 | Msa0373060:CDS |
| GCATTCTTGAAGATCCTTAT+AGG | 0.241455 | 3_1:+72021063 | None:intergenic |
| ATTAATATGGCTTCTTCTAT+TGG | 0.241934 | 3_1:-72022189 | Msa0373060:exon |
| AGAAGCCATATTAATTGATT+TGG | 0.245541 | 3_1:+72022197 | None:intergenic |
| TCTGTCCAAATCAATTAATA+TGG | 0.295797 | 3_1:-72022202 | Msa0373060:exon |
| TCAATTTAGTCTCATTAGAT+AGG | 0.320482 | 3_1:+72020481 | None:intergenic |
| CACTCTGCAGGAATACCTTC+TGG | 0.325804 | 3_1:+72020745 | None:intergenic |
| CATTCTTGAAGATCCTTATA+GGG | 0.350905 | 3_1:+72021064 | None:intergenic |
| TAGTTGATAACATCCCTATA+AGG | 0.361735 | 3_1:-72021077 | Msa0373060:CDS |
| GTCTCTGGAACGCTGATGAT+TGG | 0.365899 | 3_1:-72020987 | Msa0373060:CDS |
| TATTACTTACATAATGTGTT+GGG | 0.366572 | 3_1:+72021182 | None:intergenic |
| TTGCGGTAGTAAGCTGTAAA+TGG | 0.368145 | 3_1:+72020922 | None:intergenic |
| ATGCAACTCAAACTCGTTGC+TGG | 0.383246 | 3_1:-72021961 | Msa0373060:CDS |
| GAGAACAACAATTCTACCTT+TGG | 0.383624 | 3_1:-72021251 | Msa0373060:CDS |
| ACCAAGACTTTGATCTAACT+TGG | 0.385781 | 3_1:-72022098 | Msa0373060:CDS |
| ATTGGTTGGTTCTTTGGGAA+TGG | 0.395735 | 3_1:+72021024 | None:intergenic |
| TTGGAATGAGAATATGTTAT+GGG | 0.407577 | 3_1:+72022347 | None:intergenic |
| AGACTTGAATAGATTCTCAT+TGG | 0.409589 | 3_1:+72021006 | None:intergenic |
| TGTGTTAGATGGAGTGCGTT+AGG | 0.410052 | 3_1:+72022320 | None:intergenic |
| ATAAATACTCTTTCTTCGAT+TGG | 0.413180 | 3_1:+72021998 | None:intergenic |
| TTCAAGAATGCTGAATCAAT+TGG | 0.430099 | 3_1:-72021051 | Msa0373060:CDS |
| GTCTATATATATGTGTTAGA+TGG | 0.433017 | 3_1:+72022309 | None:intergenic |
| TGAGAATCTATTCAAGTCTC+TGG | 0.437244 | 3_1:-72021002 | Msa0373060:CDS |
| AGAGTAAGTGTGGAAGTTCT+TGG | 0.438651 | 3_1:+72021218 | None:intergenic |
| CTAGACAAAACCTCGGGCTC+TGG | 0.447506 | 3_1:-72022024 | Msa0373060:CDS |
| TCCACACTTACTCTATCATC+TGG | 0.453939 | 3_1:-72021209 | Msa0373060:CDS |
| ATCATAATAAATTAAAATAG+TGG | 0.454459 | 3_1:+72020634 | None:intergenic |
| ATTGGAATGAGAATATGTTA+TGG | 0.455249 | 3_1:+72022346 | None:intergenic |
| ATGTTATGGGAATGTAATGT+AGG | 0.457298 | 3_1:+72022360 | None:intergenic |
| GTAAGCTGTAAATGGTGCTT+TGG | 0.464723 | 3_1:+72020930 | None:intergenic |
| TTGAATAGATTCTCATTGGT+TGG | 0.466553 | 3_1:+72021010 | None:intergenic |
| ATATTACTTACATAATGTGT+TGG | 0.469145 | 3_1:+72021181 | None:intergenic |
| TCTCTGGAACGCTGATGATT+GGG | 0.473167 | 3_1:-72020986 | Msa0373060:CDS |
| AGCAATGAGCTTGATGCATA+TGG | 0.481427 | 3_1:-72020838 | Msa0373060:CDS |
| AGTCATGATAATTAGCTCCT+TGG | 0.482305 | 3_1:-72022145 | Msa0373060:CDS |
| CTCGTTGCTGGAAACTCCGC+TGG | 0.483628 | 3_1:-72021949 | Msa0373060:CDS |
| TCATTGATCTCTCAGAACCT+TGG | 0.486786 | 3_1:+72020715 | None:intergenic |
| CTTGGACGCTTGCACTCTGC+AGG | 0.489897 | 3_1:+72020733 | None:intergenic |
| TGTGTTAGAATTAGAAAAGA+GGG | 0.493820 | 3_1:+72022287 | None:intergenic |
| AAGTGTGGAAGTTCTTGGTT+GGG | 0.498153 | 3_1:+72021223 | None:intergenic |
| CTGCAGAGTGCAAGCGTCCA+AGG | 0.505272 | 3_1:-72020732 | Msa0373060:CDS |
| ACTCTGCAGGAATACCTTCT+GGG | 0.505825 | 3_1:+72020746 | None:intergenic |
| ATATAGATTGAAAAGTGATA+AGG | 0.507150 | 3_1:+72020524 | None:intergenic |
| TTGGGCTACAAGAGGTGGTT+TGG | 0.508778 | 3_1:-72020968 | Msa0373060:CDS |
| CCAAGACTTTGATCTAACTT+GGG | 0.509119 | 3_1:-72022097 | Msa0373060:CDS |
| ACGTTTGTATGAAGAATGTA+AGG | 0.516073 | 3_1:+72021297 | None:intergenic |
| GTGTTAGATGGAGTGCGTTA+GGG | 0.516696 | 3_1:+72022321 | None:intergenic |
| CACCGTGCTAAGATATTCAA+TGG | 0.519496 | 3_1:-72022069 | Msa0373060:CDS |
| CCCAAGTTAGATCAAAGTCT+TGG | 0.522663 | 3_1:+72022097 | None:intergenic |
| ATTTAGTCTCATTAGATAGG+AGG | 0.527055 | 3_1:+72020484 | None:intergenic |
| GGCATGAACAATATGCTGAT+TGG | 0.535335 | 3_1:-72022168 | Msa0373060:CDS |
| ATTGAAAAGTGATAAGGAAG+TGG | 0.537424 | 3_1:+72020530 | None:intergenic |
| ATGTGTTAGAATTAGAAAAG+AGG | 0.540042 | 3_1:+72022286 | None:intergenic |
| GAGTTCTTGGGAAATGTTAG+CGG | 0.540045 | 3_1:-72021324 | Msa0373060:CDS |
| TAAGTGTGGAAGTTCTTGGT+TGG | 0.544799 | 3_1:+72021222 | None:intergenic |
| GTGGTTTGGTGAAAACTGAT+TGG | 0.548484 | 3_1:-72020954 | Msa0373060:CDS |
| AGAACCGTTATAAAATAAGA+TGG | 0.549036 | 3_1:+72020675 | None:intergenic |
| AAATCTATTTCATCGTGTGT+TGG | 0.556214 | 3_1:+72021348 | None:intergenic |
| ACTCGGTAGCTTTGAAATTG+CGG | 0.568678 | 3_1:+72020905 | None:intergenic |
| ATTACTTACATAATGTGTTG+GGG | 0.569004 | 3_1:+72021183 | None:intergenic |
| TGCAGAATCAGAGAAGGAAG+TGG | 0.572405 | 3_1:+72020867 | None:intergenic |
| CGATTGGAAGCCAGAGCCCG+AGG | 0.573236 | 3_1:+72022014 | None:intergenic |
| GATGATTGGGCTACAAGAGG+TGG | 0.583367 | 3_1:-72020973 | Msa0373060:CDS |
| TCCAGATGATAGAGTAAGTG+TGG | 0.584360 | 3_1:+72021208 | None:intergenic |
| ATGGTAGAAGAAGATTGAGG+TGG | 0.584786 | 3_1:-72020819 | Msa0373060:CDS |
| ATGTAATTGTTGTGATGTGA+AGG | 0.585009 | 3_1:+72022263 | None:intergenic |
| AGCAGAACATGTAGCTACCA+AGG | 0.586171 | 3_1:+72022128 | None:intergenic |
| TCTTGGTTGGGTCAAACCAA+AGG | 0.586504 | 3_1:+72021235 | None:intergenic |
| CTTTCTCTAGACAAAACCTC+GGG | 0.590397 | 3_1:-72022030 | Msa0373060:CDS |
| TCTTTCTCTAGACAAAACCT+CGG | 0.610000 | 3_1:-72022031 | Msa0373060:CDS |
| CATATGGTAGAAGAAGATTG+AGG | 0.622675 | 3_1:-72020822 | Msa0373060:CDS |
| CAAGACTTTGATCTAACTTG+GGG | 0.623881 | 3_1:-72022096 | Msa0373060:CDS |
| TTGCAATGCAGAATCAGAGA+AGG | 0.624929 | 3_1:+72020861 | None:intergenic |
| CACCATTGAATATCTTAGCA+CGG | 0.635606 | 3_1:+72022067 | None:intergenic |
| TGGTAGAAGAAGATTGAGGT+GGG | 0.642709 | 3_1:-72020818 | Msa0373060:CDS |
| ATGGTGCAGTTATCATCACA+AGG | 0.643718 | 3_1:-72021372 | Msa0373060:intron |
| GCTGATGATTGGGCTACAAG+AGG | 0.647339 | 3_1:-72020976 | Msa0373060:CDS |
| GATCTTAAGCGATTCCCAGA+AGG | 0.649786 | 3_1:-72020760 | Msa0373060:CDS |
| GGAAGAGATAGATGATAACT+CGG | 0.649852 | 3_1:+72020888 | None:intergenic |
| TGTTATGGGAATGTAATGTA+GGG | 0.652978 | 3_1:+72022361 | None:intergenic |
| TATGGGAATGTAATGTAGGG+TGG | 0.656192 | 3_1:+72022364 | None:intergenic |
| GTAAGCAGTGACGGTTCCAG+CGG | 0.667054 | 3_1:+72021933 | None:intergenic |
| ACGTACGTAGTAAGCAGTGA+CGG | 0.675655 | 3_1:+72021924 | None:intergenic |
| CGTGCTAAGATATTCAATGG+TGG | 0.692895 | 3_1:-72022066 | Msa0373060:CDS |
| TGGTGCAGTTATCATCACAA+GGG | 0.717771 | 3_1:-72021371 | Msa0373060:intron |
| CATTGAATATCTTAGCACGG+TGG | 0.785980 | 3_1:+72022070 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTCTATCTAATTAATT+CGG | - | chr3_1:72020969-72020988 | Msa0373060:CDS | 10.0% |
| !! | ATCATAATAAATTAAAATAG+TGG | + | chr3_1:72022234-72022253 | None:intergenic | 10.0% |
| !!! | TTTTTTCTATCTAATTAATT+CGG | - | chr3_1:72020969-72020988 | Msa0373060:CDS | 10.0% |
| !! | ATCATAATAAATTAAAATAG+TGG | + | chr3_1:72022234-72022253 | None:intergenic | 10.0% |
| !! | ATTAATTAGATAGAAAAAAG+AGG | + | chr3_1:72020968-72020987 | None:intergenic | 15.0% |
| !! | GAATATAATATATAAATGTG+AGG | + | chr3_1:72021143-72021162 | None:intergenic | 15.0% |
| !!! | TATATTCCTCTATATTTTTT+TGG | - | chr3_1:72022266-72022285 | Msa0373060:five_prime_UTR | 15.0% |
| !! | ATTAATTAGATAGAAAAAAG+AGG | + | chr3_1:72020968-72020987 | None:intergenic | 15.0% |
| !! | GAATATAATATATAAATGTG+AGG | + | chr3_1:72021143-72021162 | None:intergenic | 15.0% |
| !!! | TATATTCCTCTATATTTTTT+TGG | - | chr3_1:72022266-72022285 | Msa0373060:five_prime_UTR | 15.0% |
| !! | ATAATATATAAATGTGAGGA+AGG | + | chr3_1:72021139-72021158 | None:intergenic | 20.0% |
| !! | TGAGATTAGAACATAAATAA+CGG | + | chr3_1:72021241-72021260 | None:intergenic | 20.0% |
| !!! | TAGAAGTATATGATTTTCAA+TGG | - | chr3_1:72021474-72021493 | Msa0373060:intron | 20.0% |
| !! | TATTACTTACATAATGTGTT+GGG | + | chr3_1:72021686-72021705 | None:intergenic | 20.0% |
| !! | ATATTACTTACATAATGTGT+TGG | + | chr3_1:72021687-72021706 | None:intergenic | 20.0% |
| !!! | ATAGCCATCTTATTTTATAA+CGG | - | chr3_1:72022186-72022205 | Msa0373060:CDS | 20.0% |
| !! | ATATAGATTGAAAAGTGATA+AGG | + | chr3_1:72022344-72022363 | None:intergenic | 20.0% |
| !! | ATAATATATAAATGTGAGGA+AGG | + | chr3_1:72021139-72021158 | None:intergenic | 20.0% |
| !! | TGAGATTAGAACATAAATAA+CGG | + | chr3_1:72021241-72021260 | None:intergenic | 20.0% |
| !!! | TAGAAGTATATGATTTTCAA+TGG | - | chr3_1:72021474-72021493 | Msa0373060:intron | 20.0% |
| !! | TATTACTTACATAATGTGTT+GGG | + | chr3_1:72021686-72021705 | None:intergenic | 20.0% |
| !! | ATATTACTTACATAATGTGT+TGG | + | chr3_1:72021687-72021706 | None:intergenic | 20.0% |
| !!! | ATAGCCATCTTATTTTATAA+CGG | - | chr3_1:72022186-72022205 | Msa0373060:CDS | 20.0% |
| !! | ATATAGATTGAAAAGTGATA+AGG | + | chr3_1:72022344-72022363 | None:intergenic | 20.0% |
| ! | TTGGAATGAGAATATGTTAT+GGG | + | chr3_1:72020521-72020540 | None:intergenic | 25.0% |
| ! | ATTGGAATGAGAATATGTTA+TGG | + | chr3_1:72020522-72020541 | None:intergenic | 25.0% |
| ! | GTCTATATATATGTGTTAGA+TGG | + | chr3_1:72020559-72020578 | None:intergenic | 25.0% |
| ! | TGTGTTAGAATTAGAAAAGA+GGG | + | chr3_1:72020581-72020600 | None:intergenic | 25.0% |
| ! | ATGTGTTAGAATTAGAAAAG+AGG | + | chr3_1:72020582-72020601 | None:intergenic | 25.0% |
| ! | TCTGTCCAAATCAATTAATA+TGG | - | chr3_1:72020663-72020682 | Msa0373060:three_prime_UTR | 25.0% |
| ! | AGAAGCCATATTAATTGATT+TGG | + | chr3_1:72020671-72020690 | None:intergenic | 25.0% |
| ! | ATTAATATGGCTTCTTCTAT+TGG | - | chr3_1:72020676-72020695 | Msa0373060:three_prime_UTR | 25.0% |
| ! | ATAAATACTCTTTCTTCGAT+TGG | + | chr3_1:72020870-72020889 | None:intergenic | 25.0% |
| !!! | TCGAAGAAAGAGTATTTATT+TGG | - | chr3_1:72020871-72020890 | Msa0373060:CDS | 25.0% |
| !! | AAGTGTAGTTTTTGCAAAAA+TGG | - | chr3_1:72021054-72021073 | Msa0373060:CDS | 25.0% |
| !! | TAACGGTTGTATTTTTCATA+TGG | + | chr3_1:72021224-72021243 | None:intergenic | 25.0% |
| !!! | TTACATATAACTTGGTTTGT+GGG | + | chr3_1:72021330-72021349 | None:intergenic | 25.0% |
| ! | GTACAAAGTTACATATAACT+TGG | + | chr3_1:72021338-72021357 | None:intergenic | 25.0% |
| !!! | TGAAATAGATTTTGAGTTCT+TGG | - | chr3_1:72021528-72021547 | Msa0373060:intron | 25.0% |
| !!! | GAAATAGATTTTGAGTTCTT+GGG | - | chr3_1:72021529-72021548 | Msa0373060:intron | 25.0% |
| ! | ATTACTTACATAATGTGTTG+GGG | + | chr3_1:72021685-72021704 | None:intergenic | 25.0% |
| ! | AGAACCGTTATAAAATAAGA+TGG | + | chr3_1:72022193-72022212 | None:intergenic | 25.0% |
| ! | TAGACACCAAAAAAATATAG+AGG | + | chr3_1:72022275-72022294 | None:intergenic | 25.0% |
| ! | TTGGAATGAGAATATGTTAT+GGG | + | chr3_1:72020521-72020540 | None:intergenic | 25.0% |
| ! | ATTGGAATGAGAATATGTTA+TGG | + | chr3_1:72020522-72020541 | None:intergenic | 25.0% |
| ! | GTCTATATATATGTGTTAGA+TGG | + | chr3_1:72020559-72020578 | None:intergenic | 25.0% |
| ! | TGTGTTAGAATTAGAAAAGA+GGG | + | chr3_1:72020581-72020600 | None:intergenic | 25.0% |
| ! | ATGTGTTAGAATTAGAAAAG+AGG | + | chr3_1:72020582-72020601 | None:intergenic | 25.0% |
| ! | TCTGTCCAAATCAATTAATA+TGG | - | chr3_1:72020663-72020682 | Msa0373060:three_prime_UTR | 25.0% |
| ! | AGAAGCCATATTAATTGATT+TGG | + | chr3_1:72020671-72020690 | None:intergenic | 25.0% |
| ! | ATTAATATGGCTTCTTCTAT+TGG | - | chr3_1:72020676-72020695 | Msa0373060:three_prime_UTR | 25.0% |
| ! | ATAAATACTCTTTCTTCGAT+TGG | + | chr3_1:72020870-72020889 | None:intergenic | 25.0% |
| !!! | TCGAAGAAAGAGTATTTATT+TGG | - | chr3_1:72020871-72020890 | Msa0373060:CDS | 25.0% |
| !! | AAGTGTAGTTTTTGCAAAAA+TGG | - | chr3_1:72021054-72021073 | Msa0373060:CDS | 25.0% |
| !! | TAACGGTTGTATTTTTCATA+TGG | + | chr3_1:72021224-72021243 | None:intergenic | 25.0% |
| !!! | TTACATATAACTTGGTTTGT+GGG | + | chr3_1:72021330-72021349 | None:intergenic | 25.0% |
| ! | GTACAAAGTTACATATAACT+TGG | + | chr3_1:72021338-72021357 | None:intergenic | 25.0% |
| !!! | TGAAATAGATTTTGAGTTCT+TGG | - | chr3_1:72021528-72021547 | Msa0373060:intron | 25.0% |
| !!! | GAAATAGATTTTGAGTTCTT+GGG | - | chr3_1:72021529-72021548 | Msa0373060:intron | 25.0% |
| ! | ATTACTTACATAATGTGTTG+GGG | + | chr3_1:72021685-72021704 | None:intergenic | 25.0% |
| ! | AGAACCGTTATAAAATAAGA+TGG | + | chr3_1:72022193-72022212 | None:intergenic | 25.0% |
| ! | TAGACACCAAAAAAATATAG+AGG | + | chr3_1:72022275-72022294 | None:intergenic | 25.0% |
| TGTTATGGGAATGTAATGTA+GGG | + | chr3_1:72020507-72020526 | None:intergenic | 30.0% | |
| ATGTTATGGGAATGTAATGT+AGG | + | chr3_1:72020508-72020527 | None:intergenic | 30.0% | |
| ATGTAATTGTTGTGATGTGA+AGG | + | chr3_1:72020605-72020624 | None:intergenic | 30.0% | |
| !! | AATTCGGTGTATGATTAGAT+TGG | - | chr3_1:72020985-72021004 | Msa0373060:CDS | 30.0% |
| TTGCAAAATCATTGTAACAC+TGG | - | chr3_1:72021017-72021036 | Msa0373060:CDS | 30.0% | |
| ! | TGTAGTTTTTGCAAAAATGG+TGG | - | chr3_1:72021057-72021076 | Msa0373060:CDS | 30.0% |
| TTTCAAAAGCAACTTTACCT+TGG | - | chr3_1:72021169-72021188 | Msa0373060:intron | 30.0% | |
| TGTCGTGAATGCATAAATAA+CGG | + | chr3_1:72021286-72021305 | None:intergenic | 30.0% | |
| ! | GTTACATATAACTTGGTTTG+TGG | + | chr3_1:72021331-72021350 | None:intergenic | 30.0% |
| !! | TAGTTTGCTTCTTTGTATTG+CGG | - | chr3_1:72021439-72021458 | Msa0373060:intron | 30.0% |
| AAATCTATTTCATCGTGTGT+TGG | + | chr3_1:72021520-72021539 | None:intergenic | 30.0% | |
| ACGTTTGTATGAAGAATGTA+AGG | + | chr3_1:72021571-72021590 | None:intergenic | 30.0% | |
| !! | TAGTTATACGAACTTGTTAG+CGG | + | chr3_1:72021756-72021775 | None:intergenic | 30.0% |
| !! | TAGTTGATAACATCCCTATA+AGG | - | chr3_1:72021788-72021807 | Msa0373060:intron | 30.0% |
| CATTCTTGAAGATCCTTATA+GGG | + | chr3_1:72021804-72021823 | None:intergenic | 30.0% | |
| TTCAAGAATGCTGAATCAAT+TGG | - | chr3_1:72021814-72021833 | Msa0373060:intron | 30.0% | |
| TTGAATAGATTCTCATTGGT+TGG | + | chr3_1:72021858-72021877 | None:intergenic | 30.0% | |
| AGACTTGAATAGATTCTCAT+TGG | + | chr3_1:72021862-72021881 | None:intergenic | 30.0% | |
| ATTGAAAAGTGATAAGGAAG+TGG | + | chr3_1:72022338-72022357 | None:intergenic | 30.0% | |
| TGTTATGGGAATGTAATGTA+GGG | + | chr3_1:72020507-72020526 | None:intergenic | 30.0% | |
| ATGTTATGGGAATGTAATGT+AGG | + | chr3_1:72020508-72020527 | None:intergenic | 30.0% | |
| ATGTAATTGTTGTGATGTGA+AGG | + | chr3_1:72020605-72020624 | None:intergenic | 30.0% | |
| !! | AATTCGGTGTATGATTAGAT+TGG | - | chr3_1:72020985-72021004 | Msa0373060:CDS | 30.0% |
| TTGCAAAATCATTGTAACAC+TGG | - | chr3_1:72021017-72021036 | Msa0373060:CDS | 30.0% | |
| ! | TGTAGTTTTTGCAAAAATGG+TGG | - | chr3_1:72021057-72021076 | Msa0373060:CDS | 30.0% |
| TTTCAAAAGCAACTTTACCT+TGG | - | chr3_1:72021169-72021188 | Msa0373060:intron | 30.0% | |
| TGTCGTGAATGCATAAATAA+CGG | + | chr3_1:72021286-72021305 | None:intergenic | 30.0% | |
| ! | GTTACATATAACTTGGTTTG+TGG | + | chr3_1:72021331-72021350 | None:intergenic | 30.0% |
| !! | TAGTTTGCTTCTTTGTATTG+CGG | - | chr3_1:72021439-72021458 | Msa0373060:intron | 30.0% |
| AAATCTATTTCATCGTGTGT+TGG | + | chr3_1:72021520-72021539 | None:intergenic | 30.0% | |
| ACGTTTGTATGAAGAATGTA+AGG | + | chr3_1:72021571-72021590 | None:intergenic | 30.0% | |
| !! | TAGTTATACGAACTTGTTAG+CGG | + | chr3_1:72021756-72021775 | None:intergenic | 30.0% |
| !! | TAGTTGATAACATCCCTATA+AGG | - | chr3_1:72021788-72021807 | Msa0373060:intron | 30.0% |
| CATTCTTGAAGATCCTTATA+GGG | + | chr3_1:72021804-72021823 | None:intergenic | 30.0% | |
| TTCAAGAATGCTGAATCAAT+TGG | - | chr3_1:72021814-72021833 | Msa0373060:intron | 30.0% | |
| TTGAATAGATTCTCATTGGT+TGG | + | chr3_1:72021858-72021877 | None:intergenic | 30.0% | |
| AGACTTGAATAGATTCTCAT+TGG | + | chr3_1:72021862-72021881 | None:intergenic | 30.0% | |
| ATTGAAAAGTGATAAGGAAG+TGG | + | chr3_1:72022338-72022357 | None:intergenic | 30.0% | |
| AGTCATGATAATTAGCTCCT+TGG | - | chr3_1:72020720-72020739 | Msa0373060:exon | 35.0% | |
| ACCAAGACTTTGATCTAACT+TGG | - | chr3_1:72020767-72020786 | Msa0373060:CDS | 35.0% | |
| CCAAGACTTTGATCTAACTT+GGG | - | chr3_1:72020768-72020787 | Msa0373060:CDS | 35.0% | |
| CAAGACTTTGATCTAACTTG+GGG | - | chr3_1:72020769-72020788 | Msa0373060:CDS | 35.0% | |
| CACCATTGAATATCTTAGCA+CGG | + | chr3_1:72020801-72020820 | None:intergenic | 35.0% | |
| TCTTTCTCTAGACAAAACCT+CGG | - | chr3_1:72020834-72020853 | Msa0373060:CDS | 35.0% | |
| ! | AGTTTTTGCAAAAATGGTGG+TGG | - | chr3_1:72021060-72021079 | Msa0373060:CDS | 35.0% |
| TATATAAATGTGAGGAAGGC+AGG | + | chr3_1:72021135-72021154 | None:intergenic | 35.0% | |
| CATTTGATATCAAGAAGCCA+AGG | + | chr3_1:72021189-72021208 | None:intergenic | 35.0% | |
| !! | TATAACTTGGTTTGTGGGTT+TGG | + | chr3_1:72021325-72021344 | None:intergenic | 35.0% |
| ! | CATACAAACGTGTTTTCTCA+AGG | - | chr3_1:72021580-72021599 | Msa0373060:intron | 35.0% |
| GAGAACAACAATTCTACCTT+TGG | - | chr3_1:72021614-72021633 | Msa0373060:intron | 35.0% | |
| GCATTCTTGAAGATCCTTAT+AGG | + | chr3_1:72021805-72021824 | None:intergenic | 35.0% | |
| ! | TTCTCATTGGTTGGTTCTTT+GGG | + | chr3_1:72021849-72021868 | None:intergenic | 35.0% |
| ! | ATTCTCATTGGTTGGTTCTT+TGG | + | chr3_1:72021850-72021869 | None:intergenic | 35.0% |
| TGAGAATCTATTCAAGTCTC+TGG | - | chr3_1:72021863-72021882 | Msa0373060:intron | 35.0% | |
| GGAAGAGATAGATGATAACT+CGG | + | chr3_1:72021980-72021999 | None:intergenic | 35.0% | |
| CATATGGTAGAAGAAGATTG+AGG | - | chr3_1:72022043-72022062 | Msa0373060:CDS | 35.0% | |
| AGTCATGATAATTAGCTCCT+TGG | - | chr3_1:72020720-72020739 | Msa0373060:exon | 35.0% | |
| ACCAAGACTTTGATCTAACT+TGG | - | chr3_1:72020767-72020786 | Msa0373060:CDS | 35.0% | |
| CCAAGACTTTGATCTAACTT+GGG | - | chr3_1:72020768-72020787 | Msa0373060:CDS | 35.0% | |
| CAAGACTTTGATCTAACTTG+GGG | - | chr3_1:72020769-72020788 | Msa0373060:CDS | 35.0% | |
| CACCATTGAATATCTTAGCA+CGG | + | chr3_1:72020801-72020820 | None:intergenic | 35.0% | |
| TCTTTCTCTAGACAAAACCT+CGG | - | chr3_1:72020834-72020853 | Msa0373060:CDS | 35.0% | |
| ! | AGTTTTTGCAAAAATGGTGG+TGG | - | chr3_1:72021060-72021079 | Msa0373060:CDS | 35.0% |
| TATATAAATGTGAGGAAGGC+AGG | + | chr3_1:72021135-72021154 | None:intergenic | 35.0% | |
| CATTTGATATCAAGAAGCCA+AGG | + | chr3_1:72021189-72021208 | None:intergenic | 35.0% | |
| !! | TATAACTTGGTTTGTGGGTT+TGG | + | chr3_1:72021325-72021344 | None:intergenic | 35.0% |
| ! | CATACAAACGTGTTTTCTCA+AGG | - | chr3_1:72021580-72021599 | Msa0373060:intron | 35.0% |
| GAGAACAACAATTCTACCTT+TGG | - | chr3_1:72021614-72021633 | Msa0373060:intron | 35.0% | |
| GCATTCTTGAAGATCCTTAT+AGG | + | chr3_1:72021805-72021824 | None:intergenic | 35.0% | |
| ! | TTCTCATTGGTTGGTTCTTT+GGG | + | chr3_1:72021849-72021868 | None:intergenic | 35.0% |
| ! | ATTCTCATTGGTTGGTTCTT+TGG | + | chr3_1:72021850-72021869 | None:intergenic | 35.0% |
| TGAGAATCTATTCAAGTCTC+TGG | - | chr3_1:72021863-72021882 | Msa0373060:intron | 35.0% | |
| GGAAGAGATAGATGATAACT+CGG | + | chr3_1:72021980-72021999 | None:intergenic | 35.0% | |
| CATATGGTAGAAGAAGATTG+AGG | - | chr3_1:72022043-72022062 | Msa0373060:CDS | 35.0% | |
| TATGGGAATGTAATGTAGGG+TGG | + | chr3_1:72020504-72020523 | None:intergenic | 40.0% | |
| GGCATGAACAATATGCTGAT+TGG | - | chr3_1:72020697-72020716 | Msa0373060:three_prime_UTR | 40.0% | |
| CCCAAGTTAGATCAAAGTCT+TGG | + | chr3_1:72020771-72020790 | None:intergenic | 40.0% | |
| CATTGAATATCTTAGCACGG+TGG | + | chr3_1:72020798-72020817 | None:intergenic | 40.0% | |
| CACCGTGCTAAGATATTCAA+TGG | - | chr3_1:72020796-72020815 | Msa0373060:CDS | 40.0% | |
| CGTGCTAAGATATTCAATGG+TGG | - | chr3_1:72020799-72020818 | Msa0373060:CDS | 40.0% | |
| CTTTCTCTAGACAAAACCTC+GGG | - | chr3_1:72020835-72020854 | Msa0373060:CDS | 40.0% | |
| ATGGTGCAGTTATCATCACA+AGG | - | chr3_1:72021493-72021512 | Msa0373060:intron | 40.0% | |
| TGGTGCAGTTATCATCACAA+GGG | - | chr3_1:72021494-72021513 | Msa0373060:intron | 40.0% | |
| GAGTTCTTGGGAAATGTTAG+CGG | - | chr3_1:72021541-72021560 | Msa0373060:intron | 40.0% | |
| ! | AACGTGTTTTCTCAAGGCAA+AGG | - | chr3_1:72021586-72021605 | Msa0373060:intron | 40.0% |
| AAGTGTGGAAGTTCTTGGTT+GGG | + | chr3_1:72021645-72021664 | None:intergenic | 40.0% | |
| TAAGTGTGGAAGTTCTTGGT+TGG | + | chr3_1:72021646-72021665 | None:intergenic | 40.0% | |
| AGAGTAAGTGTGGAAGTTCT+TGG | + | chr3_1:72021650-72021669 | None:intergenic | 40.0% | |
| TCCACACTTACTCTATCATC+TGG | - | chr3_1:72021656-72021675 | Msa0373060:intron | 40.0% | |
| TCCAGATGATAGAGTAAGTG+TGG | + | chr3_1:72021660-72021679 | None:intergenic | 40.0% | |
| ! | ATTGGTTGGTTCTTTGGGAA+TGG | + | chr3_1:72021844-72021863 | None:intergenic | 40.0% |
| !! | GTGGTTTGGTGAAAACTGAT+TGG | - | chr3_1:72021911-72021930 | Msa0373060:intron | 40.0% |
| GTAAGCTGTAAATGGTGCTT+TGG | + | chr3_1:72021938-72021957 | None:intergenic | 40.0% | |
| TTGCGGTAGTAAGCTGTAAA+TGG | + | chr3_1:72021946-72021965 | None:intergenic | 40.0% | |
| !! | ACTCGGTAGCTTTGAAATTG+CGG | + | chr3_1:72021963-72021982 | None:intergenic | 40.0% |
| TTGCAATGCAGAATCAGAGA+AGG | + | chr3_1:72022007-72022026 | None:intergenic | 40.0% | |
| AGCAATGAGCTTGATGCATA+TGG | - | chr3_1:72022027-72022046 | Msa0373060:CDS | 40.0% | |
| ATGGTAGAAGAAGATTGAGG+TGG | - | chr3_1:72022046-72022065 | Msa0373060:CDS | 40.0% | |
| TGGTAGAAGAAGATTGAGGT+GGG | - | chr3_1:72022047-72022066 | Msa0373060:CDS | 40.0% | |
| TCATTGATCTCTCAGAACCT+TGG | + | chr3_1:72022153-72022172 | None:intergenic | 40.0% | |
| TATGGGAATGTAATGTAGGG+TGG | + | chr3_1:72020504-72020523 | None:intergenic | 40.0% | |
| GGCATGAACAATATGCTGAT+TGG | - | chr3_1:72020697-72020716 | Msa0373060:three_prime_UTR | 40.0% | |
| CCCAAGTTAGATCAAAGTCT+TGG | + | chr3_1:72020771-72020790 | None:intergenic | 40.0% | |
| CATTGAATATCTTAGCACGG+TGG | + | chr3_1:72020798-72020817 | None:intergenic | 40.0% | |
| CACCGTGCTAAGATATTCAA+TGG | - | chr3_1:72020796-72020815 | Msa0373060:CDS | 40.0% | |
| CGTGCTAAGATATTCAATGG+TGG | - | chr3_1:72020799-72020818 | Msa0373060:CDS | 40.0% | |
| CTTTCTCTAGACAAAACCTC+GGG | - | chr3_1:72020835-72020854 | Msa0373060:CDS | 40.0% | |
| ATGGTGCAGTTATCATCACA+AGG | - | chr3_1:72021493-72021512 | Msa0373060:intron | 40.0% | |
| TGGTGCAGTTATCATCACAA+GGG | - | chr3_1:72021494-72021513 | Msa0373060:intron | 40.0% | |
| GAGTTCTTGGGAAATGTTAG+CGG | - | chr3_1:72021541-72021560 | Msa0373060:intron | 40.0% | |
| ! | AACGTGTTTTCTCAAGGCAA+AGG | - | chr3_1:72021586-72021605 | Msa0373060:intron | 40.0% |
| AAGTGTGGAAGTTCTTGGTT+GGG | + | chr3_1:72021645-72021664 | None:intergenic | 40.0% | |
| TAAGTGTGGAAGTTCTTGGT+TGG | + | chr3_1:72021646-72021665 | None:intergenic | 40.0% | |
| AGAGTAAGTGTGGAAGTTCT+TGG | + | chr3_1:72021650-72021669 | None:intergenic | 40.0% | |
| TCCACACTTACTCTATCATC+TGG | - | chr3_1:72021656-72021675 | Msa0373060:intron | 40.0% | |
| TCCAGATGATAGAGTAAGTG+TGG | + | chr3_1:72021660-72021679 | None:intergenic | 40.0% | |
| ! | ATTGGTTGGTTCTTTGGGAA+TGG | + | chr3_1:72021844-72021863 | None:intergenic | 40.0% |
| !! | GTGGTTTGGTGAAAACTGAT+TGG | - | chr3_1:72021911-72021930 | Msa0373060:intron | 40.0% |
| GTAAGCTGTAAATGGTGCTT+TGG | + | chr3_1:72021938-72021957 | None:intergenic | 40.0% | |
| TTGCGGTAGTAAGCTGTAAA+TGG | + | chr3_1:72021946-72021965 | None:intergenic | 40.0% | |
| !! | ACTCGGTAGCTTTGAAATTG+CGG | + | chr3_1:72021963-72021982 | None:intergenic | 40.0% |
| TTGCAATGCAGAATCAGAGA+AGG | + | chr3_1:72022007-72022026 | None:intergenic | 40.0% | |
| AGCAATGAGCTTGATGCATA+TGG | - | chr3_1:72022027-72022046 | Msa0373060:CDS | 40.0% | |
| ATGGTAGAAGAAGATTGAGG+TGG | - | chr3_1:72022046-72022065 | Msa0373060:CDS | 40.0% | |
| TGGTAGAAGAAGATTGAGGT+GGG | - | chr3_1:72022047-72022066 | Msa0373060:CDS | 40.0% | |
| TCATTGATCTCTCAGAACCT+TGG | + | chr3_1:72022153-72022172 | None:intergenic | 40.0% | |
| ATGGAGTGCGTTAGGGAAAT+TGG | + | chr3_1:72020540-72020559 | None:intergenic | 45.0% | |
| GTGTTAGATGGAGTGCGTTA+GGG | + | chr3_1:72020547-72020566 | None:intergenic | 45.0% | |
| TGTGTTAGATGGAGTGCGTT+AGG | + | chr3_1:72020548-72020567 | None:intergenic | 45.0% | |
| AGCAGAACATGTAGCTACCA+AGG | + | chr3_1:72020740-72020759 | None:intergenic | 45.0% | |
| ATGCAACTCAAACTCGTTGC+TGG | - | chr3_1:72020904-72020923 | Msa0373060:CDS | 45.0% | |
| ACGTACGTAGTAAGCAGTGA+CGG | + | chr3_1:72020944-72020963 | None:intergenic | 45.0% | |
| TCTTGGTTGGGTCAAACCAA+AGG | + | chr3_1:72021633-72021652 | None:intergenic | 45.0% | |
| !! | TCTCTGGAACGCTGATGATT+GGG | - | chr3_1:72021879-72021898 | Msa0373060:intron | 45.0% |
| TGCAGAATCAGAGAAGGAAG+TGG | + | chr3_1:72022001-72022020 | None:intergenic | 45.0% | |
| GATCTTAAGCGATTCCCAGA+AGG | - | chr3_1:72022105-72022124 | Msa0373060:CDS | 45.0% | |
| ACTCTGCAGGAATACCTTCT+GGG | + | chr3_1:72022122-72022141 | None:intergenic | 45.0% | |
| ATGGAGTGCGTTAGGGAAAT+TGG | + | chr3_1:72020540-72020559 | None:intergenic | 45.0% | |
| GTGTTAGATGGAGTGCGTTA+GGG | + | chr3_1:72020547-72020566 | None:intergenic | 45.0% | |
| TGTGTTAGATGGAGTGCGTT+AGG | + | chr3_1:72020548-72020567 | None:intergenic | 45.0% | |
| AGCAGAACATGTAGCTACCA+AGG | + | chr3_1:72020740-72020759 | None:intergenic | 45.0% | |
| ATGCAACTCAAACTCGTTGC+TGG | - | chr3_1:72020904-72020923 | Msa0373060:CDS | 45.0% | |
| ACGTACGTAGTAAGCAGTGA+CGG | + | chr3_1:72020944-72020963 | None:intergenic | 45.0% | |
| TCTTGGTTGGGTCAAACCAA+AGG | + | chr3_1:72021633-72021652 | None:intergenic | 45.0% | |
| !! | TCTCTGGAACGCTGATGATT+GGG | - | chr3_1:72021879-72021898 | Msa0373060:intron | 45.0% |
| TGCAGAATCAGAGAAGGAAG+TGG | + | chr3_1:72022001-72022020 | None:intergenic | 45.0% | |
| GATCTTAAGCGATTCCCAGA+AGG | - | chr3_1:72022105-72022124 | Msa0373060:CDS | 45.0% | |
| ACTCTGCAGGAATACCTTCT+GGG | + | chr3_1:72022122-72022141 | None:intergenic | 45.0% | |
| !! | CTTGGTTTGTGGGTTTGGTG+CGG | + | chr3_1:72021320-72021339 | None:intergenic | 50.0% |
| !! | GTCTCTGGAACGCTGATGAT+TGG | - | chr3_1:72021878-72021897 | Msa0373060:intron | 50.0% |
| GCTGATGATTGGGCTACAAG+AGG | - | chr3_1:72021889-72021908 | Msa0373060:intron | 50.0% | |
| GATGATTGGGCTACAAGAGG+TGG | - | chr3_1:72021892-72021911 | Msa0373060:intron | 50.0% | |
| TTGGGCTACAAGAGGTGGTT+TGG | - | chr3_1:72021897-72021916 | Msa0373060:intron | 50.0% | |
| CACTCTGCAGGAATACCTTC+TGG | + | chr3_1:72022123-72022142 | None:intergenic | 50.0% | |
| !! | CTTGGTTTGTGGGTTTGGTG+CGG | + | chr3_1:72021320-72021339 | None:intergenic | 50.0% |
| !! | GTCTCTGGAACGCTGATGAT+TGG | - | chr3_1:72021878-72021897 | Msa0373060:intron | 50.0% |
| GCTGATGATTGGGCTACAAG+AGG | - | chr3_1:72021889-72021908 | Msa0373060:intron | 50.0% | |
| GATGATTGGGCTACAAGAGG+TGG | - | chr3_1:72021892-72021911 | Msa0373060:intron | 50.0% | |
| TTGGGCTACAAGAGGTGGTT+TGG | - | chr3_1:72021897-72021916 | Msa0373060:intron | 50.0% | |
| CACTCTGCAGGAATACCTTC+TGG | + | chr3_1:72022123-72022142 | None:intergenic | 50.0% | |
| CTAGACAAAACCTCGGGCTC+TGG | - | chr3_1:72020841-72020860 | Msa0373060:CDS | 55.0% | |
| GTAAGCAGTGACGGTTCCAG+CGG | + | chr3_1:72020935-72020954 | None:intergenic | 55.0% | |
| CTAGACAAAACCTCGGGCTC+TGG | - | chr3_1:72020841-72020860 | Msa0373060:CDS | 55.0% | |
| GTAAGCAGTGACGGTTCCAG+CGG | + | chr3_1:72020935-72020954 | None:intergenic | 55.0% | |
| CTCGTTGCTGGAAACTCCGC+TGG | - | chr3_1:72020916-72020935 | Msa0373060:CDS | 60.0% | |
| CTTGGACGCTTGCACTCTGC+AGG | + | chr3_1:72022135-72022154 | None:intergenic | 60.0% | |
| CTGCAGAGTGCAAGCGTCCA+AGG | - | chr3_1:72022133-72022152 | Msa0373060:CDS | 60.0% | |
| CTCGTTGCTGGAAACTCCGC+TGG | - | chr3_1:72020916-72020935 | Msa0373060:CDS | 60.0% | |
| CTTGGACGCTTGCACTCTGC+AGG | + | chr3_1:72022135-72022154 | None:intergenic | 60.0% | |
| CTGCAGAGTGCAAGCGTCCA+AGG | - | chr3_1:72022133-72022152 | Msa0373060:CDS | 60.0% | |
| CGATTGGAAGCCAGAGCCCG+AGG | + | chr3_1:72020854-72020873 | None:intergenic | 65.0% | |
| CGATTGGAAGCCAGAGCCCG+AGG | + | chr3_1:72020854-72020873 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 72020494 | 72022393 | 72020494 | ID=Msa0373060;Name=Msa0373060 |
| chr3_1 | mRNA | 72020494 | 72022393 | 72020494 | ID=Msa0373060-mRNA-1;Parent=Msa0373060;Name=Msa0373060-mRNA-1;_AED=0.25;_eAED=0.25;_QI=188|1|1|1|1|1|3|232|282 |
| chr3_1 | exon | 72020494 | 72021104 | 72020494 | ID=Msa0373060-mRNA-1:exon:15961;Parent=Msa0373060-mRNA-1 |
| chr3_1 | exon | 72021192 | 72021385 | 72021192 | ID=Msa0373060-mRNA-1:exon:15960;Parent=Msa0373060-mRNA-1 |
| chr3_1 | exon | 72021930 | 72022393 | 72021930 | ID=Msa0373060-mRNA-1:exon:15959;Parent=Msa0373060-mRNA-1 |
| chr3_1 | five_prime_UTR | 72022206 | 72022393 | 72022206 | ID=Msa0373060-mRNA-1:five_prime_utr;Parent=Msa0373060-mRNA-1 |
| chr3_1 | CDS | 72021930 | 72022205 | 72021930 | ID=Msa0373060-mRNA-1:cds;Parent=Msa0373060-mRNA-1 |
| chr3_1 | CDS | 72021192 | 72021385 | 72021192 | ID=Msa0373060-mRNA-1:cds;Parent=Msa0373060-mRNA-1 |
| chr3_1 | CDS | 72020726 | 72021104 | 72020726 | ID=Msa0373060-mRNA-1:cds;Parent=Msa0373060-mRNA-1 |
| chr3_1 | three_prime_UTR | 72020494 | 72020725 | 72020494 | ID=Msa0373060-mRNA-1:three_prime_utr;Parent=Msa0373060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
