Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451000 | sp|P35694|XTH2_SOYBN | 85.926 | 270 | 37 | 1 | 11 | 280 | 15 | 283 | 3.92e-177 | 492 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451000 | G7JAU8 | 95.357 | 280 | 13 | 0 | 4 | 283 | 3 | 282 | 0.0 | 540 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0627580 | Msa1451000 | 0.806020 | 1.007575e-49 | -8.615850e-47 |
| Msa0690190 | Msa1451000 | 0.840106 | 1.061984e-57 | -8.615850e-47 |
| Msa0690930 | Msa1451000 | 0.803192 | 3.920601e-49 | -8.615850e-47 |
| Msa0707490 | Msa1451000 | 0.995584 | 9.426770e-218 | -8.615850e-47 |
| Msa0371510 | Msa1451000 | 0.824859 | 6.422291e-54 | -8.615850e-47 |
| Msa0373050 | Msa1451000 | 0.879777 | 9.446104e-70 | -8.615850e-47 |
| Msa0373060 | Msa1451000 | 0.874240 | 7.880862e-68 | -8.615850e-47 |
| Msa0419730 | Msa1451000 | 0.811966 | 5.374993e-51 | -8.615850e-47 |
| Msa0419860 | Msa1451000 | 0.820441 | 6.847529e-53 | -8.615850e-47 |
| Msa0421580 | Msa1451000 | 0.883127 | 5.834981e-71 | -8.615850e-47 |
| Msa0421590 | Msa1451000 | 0.872106 | 4.102178e-67 | -8.615850e-47 |
| Msa0450030 | Msa1451000 | 0.817157 | 3.814149e-52 | -8.615850e-47 |
| Msa0467590 | Msa1451000 | 0.867806 | 1.043228e-65 | -8.615850e-47 |
| Msa0467600 | Msa1451000 | 0.861740 | 8.295018e-64 | -8.615850e-47 |
| Msa1088150 | Msa1451000 | 0.893580 | 5.506886e-75 | -8.615850e-47 |
| Msa1088160 | Msa1451000 | 0.882463 | 1.020367e-70 | -8.615850e-47 |
| Msa0287660 | Msa1451000 | 0.803047 | 4.199365e-49 | -8.615850e-47 |
| Msa0573650 | Msa1451000 | 0.951171 | 3.582813e-109 | -8.615850e-47 |
| Msa0575380 | Msa1451000 | 0.813979 | 1.945732e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451000 | MtrunA17_Chr3g0122031 | 95.357 | 280 | 13 | 0 | 4 | 283 | 3 | 282 | 0.0 | 540 |
| Msa1451000 | MtrunA17_Chr3g0122021 | 95.324 | 278 | 13 | 0 | 6 | 283 | 5 | 282 | 0.0 | 536 |
| Msa1451000 | MtrunA17_Chr8g0377841 | 86.989 | 269 | 33 | 2 | 11 | 278 | 14 | 281 | 3.93e-179 | 494 |
| Msa1451000 | MtrunA17_Chr8g0389641 | 84.043 | 282 | 9 | 1 | 1 | 282 | 1 | 246 | 1.42e-173 | 479 |
| Msa1451000 | MtrunA17_Chr4g0072611 | 71.898 | 274 | 69 | 2 | 15 | 281 | 11 | 283 | 3.53e-144 | 406 |
| Msa1451000 | MtrunA17_Chr7g0258911 | 72.222 | 270 | 69 | 1 | 15 | 278 | 10 | 279 | 9.57e-142 | 400 |
| Msa1451000 | MtrunA17_Chr4g0072671 | 71.111 | 270 | 68 | 1 | 22 | 281 | 19 | 288 | 1.79e-138 | 392 |
| Msa1451000 | MtrunA17_Chr4g0072601 | 65.568 | 273 | 88 | 1 | 12 | 278 | 11 | 283 | 2.09e-133 | 379 |
| Msa1451000 | MtrunA17_Chr2g0299061 | 65.468 | 278 | 85 | 1 | 16 | 282 | 13 | 290 | 1.81e-132 | 377 |
| Msa1451000 | MtrunA17_Chr4g0071341 | 67.300 | 263 | 79 | 1 | 23 | 278 | 19 | 281 | 4.07e-130 | 370 |
| Msa1451000 | MtrunA17_Chr4g0072681 | 72.973 | 222 | 49 | 2 | 71 | 281 | 25 | 246 | 8.31e-116 | 333 |
| Msa1451000 | MtrunA17_Chr7g0252631 | 53.357 | 283 | 120 | 3 | 11 | 282 | 10 | 291 | 8.94e-106 | 309 |
| Msa1451000 | MtrunA17_Chr5g0443391 | 52.963 | 270 | 126 | 1 | 12 | 280 | 11 | 280 | 9.96e-105 | 306 |
| Msa1451000 | MtrunA17_Chr7g0252621 | 52.297 | 283 | 123 | 3 | 11 | 282 | 10 | 291 | 8.66e-104 | 304 |
| Msa1451000 | MtrunA17_Chr7g0252601 | 51.399 | 286 | 127 | 3 | 8 | 282 | 7 | 291 | 7.19e-103 | 301 |
| Msa1451000 | MtrunA17_Chr6g0461731 | 52.055 | 292 | 122 | 4 | 8 | 282 | 24 | 314 | 1.07e-102 | 302 |
| Msa1451000 | MtrunA17_Chr6g0461761 | 51.736 | 288 | 127 | 3 | 6 | 282 | 5 | 291 | 1.37e-102 | 301 |
| Msa1451000 | MtrunA17_Chr6g0486581 | 50.368 | 272 | 123 | 2 | 22 | 283 | 19 | 288 | 1.19e-96 | 286 |
| Msa1451000 | MtrunA17_Chr3g0096651 | 50.575 | 261 | 122 | 2 | 26 | 281 | 27 | 285 | 2.78e-95 | 282 |
| Msa1451000 | MtrunA17_Chr2g0323161 | 48.966 | 290 | 128 | 6 | 7 | 280 | 3 | 288 | 3.65e-94 | 280 |
| Msa1451000 | MtrunA17_Chr4g0023961 | 47.959 | 294 | 131 | 6 | 1 | 278 | 1 | 288 | 5.87e-93 | 276 |
| Msa1451000 | MtrunA17_Chr4g0054431 | 48.727 | 275 | 132 | 4 | 11 | 278 | 15 | 287 | 1.39e-92 | 275 |
| Msa1451000 | MtrunA17_Chr4g0054451 | 47.273 | 275 | 137 | 3 | 11 | 278 | 16 | 289 | 1.23e-91 | 273 |
| Msa1451000 | MtrunA17_Chr1g0206681 | 46.350 | 274 | 137 | 2 | 18 | 283 | 25 | 296 | 1.87e-90 | 270 |
| Msa1451000 | MtrunA17_Chr1g0206081 | 44.599 | 287 | 142 | 4 | 11 | 281 | 12 | 297 | 1.50e-82 | 250 |
| Msa1451000 | MtrunA17_Chr8g0390201 | 53.500 | 200 | 83 | 3 | 94 | 283 | 15 | 214 | 5.41e-75 | 228 |
| Msa1451000 | MtrunA17_Chr8g0340001 | 46.725 | 229 | 107 | 4 | 60 | 278 | 8 | 231 | 5.06e-71 | 218 |
| Msa1451000 | MtrunA17_Chr7g0264731 | 41.288 | 264 | 138 | 6 | 26 | 278 | 34 | 291 | 3.52e-63 | 200 |
| Msa1451000 | MtrunA17_Chr1g0180451 | 39.773 | 264 | 142 | 6 | 26 | 278 | 37 | 294 | 3.19e-59 | 190 |
| Msa1451000 | MtrunA17_Chr4g0028221 | 41.603 | 262 | 136 | 6 | 28 | 278 | 49 | 304 | 5.47e-59 | 190 |
| Msa1451000 | MtrunA17_Chr2g0327411 | 39.924 | 263 | 139 | 6 | 19 | 269 | 46 | 301 | 4.52e-58 | 188 |
| Msa1451000 | MtrunA17_Chr2g0303861 | 39.344 | 244 | 136 | 5 | 29 | 264 | 29 | 268 | 6.09e-56 | 181 |
| Msa1451000 | MtrunA17_Chr8g0375981 | 36.398 | 261 | 154 | 5 | 29 | 278 | 31 | 290 | 2.24e-53 | 176 |
| Msa1451000 | MtrunA17_Chr1g0161951 | 37.548 | 261 | 150 | 6 | 29 | 278 | 33 | 291 | 8.38e-51 | 169 |
| Msa1451000 | MtrunA17_Chr8g0365231 | 34.962 | 266 | 150 | 8 | 33 | 279 | 50 | 311 | 3.55e-50 | 167 |
| Msa1451000 | MtrunA17_Chr4g0072641 | 63.415 | 123 | 37 | 1 | 159 | 281 | 37 | 151 | 8.38e-50 | 161 |
| Msa1451000 | MtrunA17_Chr5g0410621 | 37.402 | 254 | 138 | 8 | 41 | 278 | 57 | 305 | 4.58e-49 | 166 |
| Msa1451000 | MtrunA17_Chr7g0235541 | 42.365 | 203 | 101 | 5 | 76 | 266 | 1 | 199 | 1.08e-48 | 160 |
| Msa1451000 | MtrunA17_Chr2g0303721 | 34.524 | 252 | 145 | 6 | 29 | 272 | 30 | 269 | 1.73e-46 | 157 |
| Msa1451000 | MtrunA17_Chr8g0382041 | 34.601 | 263 | 157 | 5 | 29 | 278 | 34 | 294 | 7.24e-44 | 152 |
| Msa1451000 | MtrunA17_Chr4g0072631 | 61.429 | 70 | 26 | 1 | 8 | 76 | 9 | 78 | 8.50e-23 | 90.5 |
| Msa1451000 | MtrunA17_Chr8g0390181 | 46.809 | 94 | 45 | 2 | 6 | 96 | 2 | 93 | 4.26e-18 | 77.8 |
| Msa1451000 | MtrunA17_Chr8g0374231 | 40.708 | 113 | 46 | 5 | 185 | 283 | 1 | 106 | 7.72e-18 | 77.4 |
| Msa1451000 | MtrunA17_Chr8g0350711 | 32.558 | 172 | 108 | 5 | 51 | 220 | 54 | 219 | 5.61e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451000 | AT3G23730.1 | 73.077 | 286 | 66 | 2 | 8 | 282 | 5 | 290 | 8.73e-165 | 459 |
| Msa1451000 | AT4G14130.1 | 74.113 | 282 | 66 | 2 | 8 | 282 | 7 | 288 | 3.45e-163 | 454 |
| Msa1451000 | AT4G25810.1 | 65.818 | 275 | 86 | 1 | 12 | 278 | 9 | 283 | 4.57e-134 | 381 |
| Msa1451000 | AT4G30270.1 | 64.576 | 271 | 82 | 2 | 11 | 281 | 12 | 268 | 5.78e-129 | 367 |
| Msa1451000 | AT5G57550.1 | 65.759 | 257 | 85 | 1 | 26 | 279 | 27 | 283 | 1.04e-128 | 367 |
| Msa1451000 | AT5G57560.1 | 63.670 | 267 | 88 | 1 | 21 | 278 | 15 | 281 | 2.27e-128 | 366 |
| Msa1451000 | AT5G57530.1 | 63.396 | 265 | 81 | 2 | 26 | 279 | 24 | 283 | 1.96e-125 | 359 |
| Msa1451000 | AT5G57540.1 | 63.019 | 265 | 82 | 3 | 26 | 279 | 23 | 282 | 5.71e-125 | 358 |
| Msa1451000 | AT4G25820.1 | 63.534 | 266 | 89 | 2 | 21 | 279 | 22 | 286 | 7.97e-123 | 352 |
| Msa1451000 | AT5G48070.1 | 57.295 | 281 | 117 | 2 | 1 | 278 | 1 | 281 | 5.77e-120 | 345 |
| Msa1451000 | AT2G18800.1 | 57.857 | 280 | 99 | 2 | 18 | 278 | 17 | 296 | 2.82e-119 | 344 |
| Msa1451000 | AT4G30280.1 | 56.228 | 281 | 120 | 2 | 1 | 278 | 1 | 281 | 1.45e-109 | 318 |
| Msa1451000 | AT4G30290.1 | 58.889 | 270 | 108 | 2 | 12 | 278 | 7 | 276 | 1.75e-109 | 318 |
| Msa1451000 | AT1G65310.2 | 60.156 | 256 | 99 | 2 | 26 | 278 | 48 | 303 | 7.20e-108 | 315 |
| Msa1451000 | AT1G65310.1 | 60.156 | 256 | 99 | 2 | 26 | 278 | 26 | 281 | 8.69e-108 | 314 |
| Msa1451000 | AT5G13870.2 | 52.669 | 281 | 123 | 3 | 11 | 282 | 12 | 291 | 4.62e-102 | 300 |
| Msa1451000 | AT5G13870.1 | 52.669 | 281 | 123 | 3 | 11 | 282 | 12 | 291 | 4.62e-102 | 300 |
| Msa1451000 | AT5G13870.3 | 52.669 | 281 | 123 | 3 | 11 | 282 | 12 | 291 | 4.62e-102 | 300 |
| Msa1451000 | AT2G06850.1 | 51.579 | 285 | 124 | 3 | 11 | 282 | 11 | 294 | 1.73e-99 | 293 |
| Msa1451000 | AT4G03210.1 | 48.936 | 282 | 130 | 5 | 11 | 282 | 11 | 288 | 4.01e-95 | 282 |
| Msa1451000 | AT4G28850.1 | 48.601 | 286 | 131 | 5 | 11 | 283 | 10 | 292 | 2.18e-92 | 275 |
| Msa1451000 | AT2G06850.2 | 56.710 | 231 | 92 | 2 | 59 | 282 | 5 | 234 | 2.84e-92 | 273 |
| Msa1451000 | AT5G65730.1 | 49.627 | 268 | 121 | 5 | 22 | 279 | 28 | 291 | 3.37e-91 | 272 |
| Msa1451000 | AT2G14620.1 | 44.792 | 288 | 144 | 2 | 11 | 283 | 12 | 299 | 6.71e-90 | 269 |
| Msa1451000 | AT4G37800.1 | 48.659 | 261 | 122 | 4 | 27 | 278 | 32 | 289 | 8.94e-88 | 263 |
| Msa1451000 | AT4G03210.2 | 52.381 | 231 | 100 | 3 | 61 | 282 | 31 | 260 | 9.67e-87 | 260 |
| Msa1451000 | AT1G11545.1 | 44.108 | 297 | 149 | 5 | 1 | 281 | 7 | 302 | 8.84e-86 | 259 |
| Msa1451000 | AT2G14620.2 | 47.436 | 234 | 115 | 1 | 58 | 283 | 16 | 249 | 1.70e-80 | 243 |
| Msa1451000 | AT2G14620.3 | 48.430 | 223 | 107 | 1 | 69 | 283 | 16 | 238 | 2.90e-78 | 238 |
| Msa1451000 | AT4G13090.1 | 42.268 | 291 | 147 | 5 | 8 | 279 | 1 | 289 | 4.85e-75 | 231 |
| Msa1451000 | AT3G25050.1 | 39.362 | 282 | 153 | 4 | 6 | 278 | 17 | 289 | 2.18e-74 | 229 |
| Msa1451000 | AT4G13080.1 | 44.238 | 269 | 131 | 7 | 22 | 279 | 32 | 292 | 5.63e-72 | 223 |
| Msa1451000 | AT2G36870.1 | 42.481 | 266 | 136 | 6 | 26 | 280 | 40 | 299 | 3.96e-63 | 201 |
| Msa1451000 | AT3G44990.1 | 40.152 | 264 | 141 | 7 | 26 | 278 | 36 | 293 | 1.92e-56 | 183 |
| Msa1451000 | AT1G10550.1 | 35.662 | 272 | 140 | 8 | 33 | 278 | 47 | 309 | 7.40e-52 | 172 |
| Msa1451000 | AT1G32170.1 | 38.272 | 243 | 132 | 6 | 51 | 278 | 54 | 293 | 9.83e-52 | 173 |
| Msa1451000 | AT1G14720.1 | 36.397 | 272 | 154 | 6 | 29 | 282 | 31 | 301 | 1.19e-51 | 172 |
| Msa1451000 | AT2G01850.1 | 31.438 | 299 | 180 | 6 | 8 | 282 | 4 | 301 | 9.41e-49 | 165 |
| Msa1451000 | AT4G18990.1 | 34.601 | 263 | 140 | 7 | 51 | 283 | 62 | 322 | 3.36e-44 | 154 |
| Msa1451000 | AT3G48580.1 | 33.462 | 260 | 151 | 8 | 23 | 278 | 32 | 273 | 3.84e-43 | 149 |
| Msa1451000 | AT4G18990.2 | 33.755 | 237 | 121 | 8 | 78 | 283 | 17 | 248 | 1.06e-36 | 132 |
| Msa1451000 | AT3G48580.3 | 31.556 | 225 | 137 | 6 | 58 | 278 | 3 | 214 | 3.75e-36 | 129 |
| Msa1451000 | AT2G36870.2 | 43.262 | 141 | 70 | 3 | 26 | 158 | 40 | 178 | 7.14e-31 | 114 |
| Msa1451000 | AT3G48580.2 | 30.566 | 265 | 132 | 11 | 23 | 278 | 32 | 253 | 1.17e-27 | 107 |
Find 78 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTCATTGGTTGGTTCTT+TGG | 0.181799 | tig0033178:+21947 | None:intergenic |
| ACCGAATAAGTACTCTTTCT+TGG | 0.193166 | tig0033178:+22538 | None:intergenic |
| GCATTCTTGAAGATCCTTAT+TGG | 0.229939 | tig0033178:+21992 | None:intergenic |
| TGTGTTCAATTAATTATTAA+TGG | 0.246323 | tig0033178:-22750 | Msa1451000:exon |
| TTCTCATTGGTTGGTTCTTT+GGG | 0.250243 | tig0033178:+21948 | None:intergenic |
| ATAGGGTACGTTAGGGAAAT+TGG | 0.263852 | tig0033178:+22874 | None:intergenic |
| GATATATAAATACAGATTCT+TGG | 0.289430 | tig0033178:-22026 | Msa1451000:intron |
| AATTGATATGCAACTCAAAT+TGG | 0.296036 | tig0033178:-22513 | Msa1451000:CDS |
| CATTCTTGAAGATCCTTATT+GGG | 0.315649 | tig0033178:+21993 | None:intergenic |
| GTCTCTGGAACGCCGATGAT+TGG | 0.334816 | tig0033178:-21916 | Msa1451000:CDS |
| TCCACACTTACTCTATCATT+TGG | 0.354596 | tig0033178:-22162 | Msa1451000:CDS |
| GATTACTTACATAATATGTT+GGG | 0.356492 | tig0033178:+22135 | None:intergenic |
| CTGCTGAGTGTAGGCGTTCA+AGG | 0.362843 | tig0033178:-21661 | Msa1451000:CDS |
| TGGTTGACAACATCCCAATA+AGG | 0.367483 | tig0033178:-22006 | Msa1451000:CDS |
| TTGCGGTAGTAAGCTCTAAA+TGG | 0.387620 | tig0033178:+21851 | None:intergenic |
| AGACTTGAATATATTCTCAT+TGG | 0.390012 | tig0033178:+21935 | None:intergenic |
| TTCAAGAATGCTGAATCTAT+TGG | 0.397240 | tig0033178:-21980 | Msa1451000:CDS |
| TGAGAATATATTCAAGTCTC+TGG | 0.397799 | tig0033178:-21931 | Msa1451000:CDS |
| TGATTACTTACATAATATGT+TGG | 0.399429 | tig0033178:+22134 | None:intergenic |
| AGCAACGAGCTTGATGCTTA+TGG | 0.410097 | tig0033178:-21767 | Msa1451000:CDS |
| CGCATGAACAATATGCTGAT+TGG | 0.411159 | tig0033178:-22713 | Msa1451000:CDS |
| CTCGACAAAGTCTCCGGCTC+TGG | 0.411568 | tig0033178:-22569 | Msa1451000:CDS |
| TCCAAGAAAGAGTACTTATT+CGG | 0.435562 | tig0033178:-22539 | Msa1451000:CDS |
| ATGCAACTCAAATTGGTTGC+TGG | 0.439162 | tig0033178:-22506 | Msa1451000:CDS |
| TTGGTTGCTGGAAACTCTGC+TGG | 0.443966 | tig0033178:-22494 | Msa1451000:CDS |
| TCTCTGGAACGCCGATGATT+GGG | 0.447932 | tig0033178:-21915 | Msa1451000:CDS |
| AGAGTAAGTGTGGAAGTTCT+TGG | 0.454863 | tig0033178:+22171 | None:intergenic |
| GTAAGCTCTAAATGGTGCTT+TGG | 0.462686 | tig0033178:+21859 | None:intergenic |
| CCCATGTTAGATCAAAATCT+TGG | 0.466463 | tig0033178:+22642 | None:intergenic |
| TGCAGAGCATGTAGCTATCA+AGG | 0.475147 | tig0033178:+22673 | None:intergenic |
| TTGGGCTACCAGAGGTGGTT+TGG | 0.478609 | tig0033178:-21897 | Msa1451000:CDS |
| TTGAATATATTCTCATTGGT+TGG | 0.480043 | tig0033178:+21939 | None:intergenic |
| ATAAGTACTCTTTCTTGGAC+TGG | 0.482666 | tig0033178:+22543 | None:intergenic |
| CTTTCTCTCGACAAAGTCTC+CGG | 0.484184 | tig0033178:-22575 | Msa1451000:CDS |
| ACGTTTGTGTGGAGAATGTA+AGG | 0.490530 | tig0033178:+22250 | None:intergenic |
| ATTGGTTGGTTCTTTGGGAA+AGG | 0.493174 | tig0033178:+21953 | None:intergenic |
| TGTGTTAGAATCAGAAAAGA+GGG | 0.495024 | tig0033178:+22823 | None:intergenic |
| CTTGGACTGGAAGCCAGAGC+CGG | 0.496315 | tig0033178:+22556 | None:intergenic |
| GAGAACAACAATTCTACCTC+TGG | 0.497697 | tig0033178:-22204 | Msa1451000:CDS |
| AGAACTGTTGTAAAATAAGA+TGG | 0.507314 | tig0033178:+21608 | None:intergenic |
| TGTGTGACATAGGGTACGTT+AGG | 0.511096 | tig0033178:+22866 | None:intergenic |
| TTGGAATGGGAATGTAATGT+AGG | 0.514000 | tig0033178:+22893 | None:intergenic |
| ATATTTCAATTTAGTCACAT+TGG | 0.520518 | tig0033178:+21441 | None:intergenic |
| ATGTGTTAGAATCAGAAAAG+AGG | 0.522084 | tig0033178:+22822 | None:intergenic |
| TACGTTAGGGAAATTGGAAT+GGG | 0.527291 | tig0033178:+22880 | None:intergenic |
| AAATCAATTTCATCGTGAGT+TGG | 0.537756 | tig0033178:+22301 | None:intergenic |
| ATGGTAGAAGAAGATTGAGA+TGG | 0.542822 | tig0033178:-21748 | Msa1451000:CDS |
| GTGGTTTGGTGAAAACTGAT+TGG | 0.548484 | tig0033178:-21883 | Msa1451000:CDS |
| GAGTTCTTGGGAAACGTTAG+CGG | 0.548565 | tig0033178:-22277 | Msa1451000:CDS |
| GATGATTGGGCTACCAGAGG+TGG | 0.556788 | tig0033178:-21902 | Msa1451000:CDS |
| CTTGAACGCCTACACTCAGC+AGG | 0.559110 | tig0033178:+21662 | None:intergenic |
| GTTCAGTAGCTTTGAAATTG+CGG | 0.561695 | tig0033178:+21834 | None:intergenic |
| ATTACTTACATAATATGTTG+GGG | 0.569004 | tig0033178:+22136 | None:intergenic |
| ACCTCTGGTAGCCCAATCAT+CGG | 0.571587 | tig0033178:+21904 | None:intergenic |
| AAGGTATTCCTGCTGAGTGT+AGG | 0.574136 | tig0033178:-21670 | Msa1451000:CDS |
| TCCAAATGATAGAGTAAGTG+TGG | 0.575302 | tig0033178:+22161 | None:intergenic |
| AGGGTGGTGAGACGCGTGAA+TGG | 0.579634 | tig0033178:+22913 | None:intergenic |
| GTACGTTAGGGAAATTGGAA+TGG | 0.581026 | tig0033178:+22879 | None:intergenic |
| AATGGAGTACTCCTAAAAGC+TGG | 0.582781 | tig0033178:+22931 | None:intergenic |
| TGGTAGAAGAAGATTGAGAT+GGG | 0.586469 | tig0033178:-21747 | Msa1451000:CDS |
| CACCGTGCTAAGATATTCAA+CGG | 0.594582 | tig0033178:-22614 | Msa1451000:CDS |
| ATGTAATTGTTGCTATGTGA+AGG | 0.596341 | tig0033178:+22799 | None:intergenic |
| GTGTGACATAGGGTACGTTA+GGG | 0.597610 | tig0033178:+22867 | None:intergenic |
| CACTCAGCAGGAATACCTTG+TGG | 0.608976 | tig0033178:+21674 | None:intergenic |
| TGCAGAATCAGAGAATGAAG+TGG | 0.609785 | tig0033178:+21796 | None:intergenic |
| TGGAATGGGAATGTAATGTA+GGG | 0.624048 | tig0033178:+22894 | None:intergenic |
| ATGGTGCAGTTGTCATCACA+AGG | 0.628374 | tig0033178:-22325 | Msa1451000:intron |
| GTAAGTGTGGAAGTTCTTGG+TGG | 0.628497 | tig0033178:+22174 | None:intergenic |
| CTTGAGAAAACACGTTTGTG+TGG | 0.633605 | tig0033178:+22239 | None:intergenic |
| CACCGTTGAATATCTTAGCA+CGG | 0.635606 | tig0033178:+22612 | None:intergenic |
| TAAGTGTGGAAGTTCTTGGT+GGG | 0.638179 | tig0033178:+22175 | None:intergenic |
| GCCGATGATTGGGCTACCAG+AGG | 0.643017 | tig0033178:-21905 | Msa1451000:CDS |
| GATCTTAAGCGATTTCCACA+AGG | 0.665367 | tig0033178:-21689 | Msa1451000:CDS |
| AATGGGAATGTAATGTAGGG+TGG | 0.665772 | tig0033178:+22897 | None:intergenic |
| ACGTACATAGTAAGCAGTGA+CGG | 0.682695 | tig0033178:+22469 | None:intergenic |
| TCTTGGTGGGATCAAACCAG+AGG | 0.721184 | tig0033178:+22188 | None:intergenic |
| TGGTGCAGTTGTCATCACAA+GGG | 0.724915 | tig0033178:-22324 | Msa1451000:intron |
| CGTGCTAAGATATTCAACGG+TGG | 0.766280 | tig0033178:-22611 | Msa1451000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTGTTCAATTAATTATTAA+TGG | - | tig0033178:21621-21640 | Msa1451000:three_prime_UTR | 15.0% |
| !! | TGTGTTCAATTAATTATTAA+TGG | - | tig0033178:21621-21640 | Msa1451000:three_prime_UTR | 15.0% |
| !! | ATTACTTACATAATATGTTG+GGG | + | tig0033178:22238-22257 | None:intergenic | 20.0% |
| !! | GATTACTTACATAATATGTT+GGG | + | tig0033178:22239-22258 | None:intergenic | 20.0% |
| !! | TGATTACTTACATAATATGT+TGG | + | tig0033178:22240-22259 | None:intergenic | 20.0% |
| !! | GATATATAAATACAGATTCT+TGG | - | tig0033178:22345-22364 | Msa1451000:intron | 20.0% |
| !!! | TATCTTCCTCTATATTTTTT+TGG | - | tig0033178:22839-22858 | Msa1451000:five_prime_UTR | 20.0% |
| !! | ATATTTCAATTTAGTCACAT+TGG | + | tig0033178:22933-22952 | None:intergenic | 20.0% |
| !! | ATTACTTACATAATATGTTG+GGG | + | tig0033178:22238-22257 | None:intergenic | 20.0% |
| !! | GATTACTTACATAATATGTT+GGG | + | tig0033178:22239-22258 | None:intergenic | 20.0% |
| !! | TGATTACTTACATAATATGT+TGG | + | tig0033178:22240-22259 | None:intergenic | 20.0% |
| !! | GATATATAAATACAGATTCT+TGG | - | tig0033178:22345-22364 | Msa1451000:intron | 20.0% |
| !!! | TATCTTCCTCTATATTTTTT+TGG | - | tig0033178:22839-22858 | Msa1451000:five_prime_UTR | 20.0% |
| !! | ATATTTCAATTTAGTCACAT+TGG | + | tig0033178:22933-22952 | None:intergenic | 20.0% |
| ! | AATTGATATGCAACTCAAAT+TGG | - | tig0033178:21858-21877 | Msa1451000:CDS | 25.0% |
| !!! | TGAAATTGATTTTGAGTTCT+TGG | - | tig0033178:22081-22100 | Msa1451000:intron | 25.0% |
| !!! | GAAATTGATTTTGAGTTCTT+GGG | - | tig0033178:22082-22101 | Msa1451000:intron | 25.0% |
| ! | TTGAATATATTCTCATTGGT+TGG | + | tig0033178:22435-22454 | None:intergenic | 25.0% |
| ! | AGACTTGAATATATTCTCAT+TGG | + | tig0033178:22439-22458 | None:intergenic | 25.0% |
| ! | AGAACTGTTGTAAAATAAGA+TGG | + | tig0033178:22766-22785 | None:intergenic | 25.0% |
| ! | TAGACACCAAAAAAATATAG+AGG | + | tig0033178:22848-22867 | None:intergenic | 25.0% |
| ! | AATTGATATGCAACTCAAAT+TGG | - | tig0033178:21858-21877 | Msa1451000:CDS | 25.0% |
| !!! | TGAAATTGATTTTGAGTTCT+TGG | - | tig0033178:22081-22100 | Msa1451000:intron | 25.0% |
| !!! | GAAATTGATTTTGAGTTCTT+GGG | - | tig0033178:22082-22101 | Msa1451000:intron | 25.0% |
| ! | TTGAATATATTCTCATTGGT+TGG | + | tig0033178:22435-22454 | None:intergenic | 25.0% |
| ! | AGACTTGAATATATTCTCAT+TGG | + | tig0033178:22439-22458 | None:intergenic | 25.0% |
| ! | AGAACTGTTGTAAAATAAGA+TGG | + | tig0033178:22766-22785 | None:intergenic | 25.0% |
| ! | TAGACACCAAAAAAATATAG+AGG | + | tig0033178:22848-22867 | None:intergenic | 25.0% |
| TGTGTTAGAATCAGAAAAGA+GGG | + | tig0033178:21551-21570 | None:intergenic | 30.0% | |
| ATGTGTTAGAATCAGAAAAG+AGG | + | tig0033178:21552-21571 | None:intergenic | 30.0% | |
| ATGTAATTGTTGCTATGTGA+AGG | + | tig0033178:21575-21594 | None:intergenic | 30.0% | |
| !! | ACCAAGATTTTGATCTAACA+TGG | - | tig0033178:21728-21747 | Msa1451000:CDS | 30.0% |
| !! | CCAAGATTTTGATCTAACAT+GGG | - | tig0033178:21729-21748 | Msa1451000:CDS | 30.0% |
| !! | CAAGATTTTGATCTAACATG+GGG | - | tig0033178:21730-21749 | Msa1451000:CDS | 30.0% |
| !! | TCCAAGAAAGAGTACTTATT+CGG | - | tig0033178:21832-21851 | Msa1451000:CDS | 30.0% |
| GAATGAATGAGATGGAAAAA+AGG | + | tig0033178:21929-21948 | None:intergenic | 30.0% | |
| ATGAGTTTGAATGAATGAGA+TGG | + | tig0033178:21937-21956 | None:intergenic | 30.0% | |
| !!! | AGCTTTTTCATGACATCAAA+AGG | - | tig0033178:22004-22023 | Msa1451000:CDS | 30.0% |
| ! | TTTTACGAGCATTTTCCTTA+TGG | - | tig0033178:22027-22046 | Msa1451000:intron | 30.0% |
| AAATCAATTTCATCGTGAGT+TGG | + | tig0033178:22073-22092 | None:intergenic | 30.0% | |
| CATTCTTGAAGATCCTTATT+GGG | + | tig0033178:22381-22400 | None:intergenic | 30.0% | |
| TTCAAGAATGCTGAATCTAT+TGG | - | tig0033178:22391-22410 | Msa1451000:intron | 30.0% | |
| TGAGAATATATTCAAGTCTC+TGG | - | tig0033178:22440-22459 | Msa1451000:intron | 30.0% | |
| TGTGTTAGAATCAGAAAAGA+GGG | + | tig0033178:21551-21570 | None:intergenic | 30.0% | |
| ATGTGTTAGAATCAGAAAAG+AGG | + | tig0033178:21552-21571 | None:intergenic | 30.0% | |
| ATGTAATTGTTGCTATGTGA+AGG | + | tig0033178:21575-21594 | None:intergenic | 30.0% | |
| !! | ACCAAGATTTTGATCTAACA+TGG | - | tig0033178:21728-21747 | Msa1451000:CDS | 30.0% |
| !! | CCAAGATTTTGATCTAACAT+GGG | - | tig0033178:21729-21748 | Msa1451000:CDS | 30.0% |
| !! | CAAGATTTTGATCTAACATG+GGG | - | tig0033178:21730-21749 | Msa1451000:CDS | 30.0% |
| !! | TCCAAGAAAGAGTACTTATT+CGG | - | tig0033178:21832-21851 | Msa1451000:CDS | 30.0% |
| GAATGAATGAGATGGAAAAA+AGG | + | tig0033178:21929-21948 | None:intergenic | 30.0% | |
| ATGAGTTTGAATGAATGAGA+TGG | + | tig0033178:21937-21956 | None:intergenic | 30.0% | |
| !!! | AGCTTTTTCATGACATCAAA+AGG | - | tig0033178:22004-22023 | Msa1451000:CDS | 30.0% |
| ! | TTTTACGAGCATTTTCCTTA+TGG | - | tig0033178:22027-22046 | Msa1451000:intron | 30.0% |
| AAATCAATTTCATCGTGAGT+TGG | + | tig0033178:22073-22092 | None:intergenic | 30.0% | |
| CATTCTTGAAGATCCTTATT+GGG | + | tig0033178:22381-22400 | None:intergenic | 30.0% | |
| TTCAAGAATGCTGAATCTAT+TGG | - | tig0033178:22391-22410 | Msa1451000:intron | 30.0% | |
| TGAGAATATATTCAAGTCTC+TGG | - | tig0033178:22440-22459 | Msa1451000:intron | 30.0% | |
| TGGAATGGGAATGTAATGTA+GGG | + | tig0033178:21480-21499 | None:intergenic | 35.0% | |
| TTGGAATGGGAATGTAATGT+AGG | + | tig0033178:21481-21500 | None:intergenic | 35.0% | |
| TACGTTAGGGAAATTGGAAT+GGG | + | tig0033178:21494-21513 | None:intergenic | 35.0% | |
| CCCATGTTAGATCAAAATCT+TGG | + | tig0033178:21732-21751 | None:intergenic | 35.0% | |
| ATAAGTACTCTTTCTTGGAC+TGG | + | tig0033178:21831-21850 | None:intergenic | 35.0% | |
| ACCGAATAAGTACTCTTTCT+TGG | + | tig0033178:21836-21855 | None:intergenic | 35.0% | |
| TCCACACTTACTCTATCATT+TGG | - | tig0033178:22209-22228 | Msa1451000:CDS | 35.0% | |
| TCCAAATGATAGAGTAAGTG+TGG | + | tig0033178:22213-22232 | None:intergenic | 35.0% | |
| GCATTCTTGAAGATCCTTAT+TGG | + | tig0033178:22382-22401 | None:intergenic | 35.0% | |
| ! | TTCTCATTGGTTGGTTCTTT+GGG | + | tig0033178:22426-22445 | None:intergenic | 35.0% |
| ! | ATTCTCATTGGTTGGTTCTT+TGG | + | tig0033178:22427-22446 | None:intergenic | 35.0% |
| !! | GTTCAGTAGCTTTGAAATTG+CGG | + | tig0033178:22540-22559 | None:intergenic | 35.0% |
| ATGGTAGAAGAAGATTGAGA+TGG | - | tig0033178:22623-22642 | Msa1451000:CDS | 35.0% | |
| TGGTAGAAGAAGATTGAGAT+GGG | - | tig0033178:22624-22643 | Msa1451000:CDS | 35.0% | |
| TGGAATGGGAATGTAATGTA+GGG | + | tig0033178:21480-21499 | None:intergenic | 35.0% | |
| TTGGAATGGGAATGTAATGT+AGG | + | tig0033178:21481-21500 | None:intergenic | 35.0% | |
| TACGTTAGGGAAATTGGAAT+GGG | + | tig0033178:21494-21513 | None:intergenic | 35.0% | |
| CCCATGTTAGATCAAAATCT+TGG | + | tig0033178:21732-21751 | None:intergenic | 35.0% | |
| ATAAGTACTCTTTCTTGGAC+TGG | + | tig0033178:21831-21850 | None:intergenic | 35.0% | |
| ACCGAATAAGTACTCTTTCT+TGG | + | tig0033178:21836-21855 | None:intergenic | 35.0% | |
| TCCACACTTACTCTATCATT+TGG | - | tig0033178:22209-22228 | Msa1451000:CDS | 35.0% | |
| TCCAAATGATAGAGTAAGTG+TGG | + | tig0033178:22213-22232 | None:intergenic | 35.0% | |
| GCATTCTTGAAGATCCTTAT+TGG | + | tig0033178:22382-22401 | None:intergenic | 35.0% | |
| ! | TTCTCATTGGTTGGTTCTTT+GGG | + | tig0033178:22426-22445 | None:intergenic | 35.0% |
| ! | ATTCTCATTGGTTGGTTCTT+TGG | + | tig0033178:22427-22446 | None:intergenic | 35.0% |
| !! | GTTCAGTAGCTTTGAAATTG+CGG | + | tig0033178:22540-22559 | None:intergenic | 35.0% |
| ATGGTAGAAGAAGATTGAGA+TGG | - | tig0033178:22623-22642 | Msa1451000:CDS | 35.0% | |
| TGGTAGAAGAAGATTGAGAT+GGG | - | tig0033178:22624-22643 | Msa1451000:CDS | 35.0% | |
| ! | AATGGAGTACTCCTAAAAGC+TGG | + | tig0033178:21443-21462 | None:intergenic | 40.0% |
| AATGGGAATGTAATGTAGGG+TGG | + | tig0033178:21477-21496 | None:intergenic | 40.0% | |
| GTACGTTAGGGAAATTGGAA+TGG | + | tig0033178:21495-21514 | None:intergenic | 40.0% | |
| ATAGGGTACGTTAGGGAAAT+TGG | + | tig0033178:21500-21519 | None:intergenic | 40.0% | |
| ATGTGTGTGTGTGTGACATA+GGG | + | tig0033178:21517-21536 | None:intergenic | 40.0% | |
| TATGTGTGTGTGTGTGACAT+AGG | + | tig0033178:21518-21537 | None:intergenic | 40.0% | |
| CGCATGAACAATATGCTGAT+TGG | - | tig0033178:21658-21677 | Msa1451000:CDS | 40.0% | |
| CACCGTGCTAAGATATTCAA+CGG | - | tig0033178:21757-21776 | Msa1451000:CDS | 40.0% | |
| CACCGTTGAATATCTTAGCA+CGG | + | tig0033178:21762-21781 | None:intergenic | 40.0% | |
| ATGCAACTCAAATTGGTTGC+TGG | - | tig0033178:21865-21884 | Msa1451000:CDS | 40.0% | |
| ACGTACATAGTAAGCAGTGA+CGG | + | tig0033178:21905-21924 | None:intergenic | 40.0% | |
| ACGTTTGTGTGGAGAATGTA+AGG | + | tig0033178:22124-22143 | None:intergenic | 40.0% | |
| CTTGAGAAAACACGTTTGTG+TGG | + | tig0033178:22135-22154 | None:intergenic | 40.0% | |
| ! | CACACAAACGTGTTTTCTCA+AGG | - | tig0033178:22133-22152 | Msa1451000:intron | 40.0% |
| ! | AACGTGTTTTCTCAAGGCAA+AGG | - | tig0033178:22139-22158 | Msa1451000:intron | 40.0% |
| GAGAACAACAATTCTACCTC+TGG | - | tig0033178:22167-22186 | Msa1451000:CDS | 40.0% | |
| TAAGTGTGGAAGTTCTTGGT+GGG | + | tig0033178:22199-22218 | None:intergenic | 40.0% | |
| AGAGTAAGTGTGGAAGTTCT+TGG | + | tig0033178:22203-22222 | None:intergenic | 40.0% | |
| TGGTTGACAACATCCCAATA+AGG | - | tig0033178:22365-22384 | Msa1451000:intron | 40.0% | |
| ! | ATTGGTTGGTTCTTTGGGAA+AGG | + | tig0033178:22421-22440 | None:intergenic | 40.0% |
| !! | GTGGTTTGGTGAAAACTGAT+TGG | - | tig0033178:22488-22507 | Msa1451000:CDS | 40.0% |
| !! | GTAAGCTCTAAATGGTGCTT+TGG | + | tig0033178:22515-22534 | None:intergenic | 40.0% |
| !! | TTGCGGTAGTAAGCTCTAAA+TGG | + | tig0033178:22523-22542 | None:intergenic | 40.0% |
| TGCAGAATCAGAGAATGAAG+TGG | + | tig0033178:22578-22597 | None:intergenic | 40.0% | |
| GATCTTAAGCGATTTCCACA+AGG | - | tig0033178:22682-22701 | Msa1451000:CDS | 40.0% | |
| ! | AATGGAGTACTCCTAAAAGC+TGG | + | tig0033178:21443-21462 | None:intergenic | 40.0% |
| AATGGGAATGTAATGTAGGG+TGG | + | tig0033178:21477-21496 | None:intergenic | 40.0% | |
| GTACGTTAGGGAAATTGGAA+TGG | + | tig0033178:21495-21514 | None:intergenic | 40.0% | |
| ATAGGGTACGTTAGGGAAAT+TGG | + | tig0033178:21500-21519 | None:intergenic | 40.0% | |
| ATGTGTGTGTGTGTGACATA+GGG | + | tig0033178:21517-21536 | None:intergenic | 40.0% | |
| TATGTGTGTGTGTGTGACAT+AGG | + | tig0033178:21518-21537 | None:intergenic | 40.0% | |
| CGCATGAACAATATGCTGAT+TGG | - | tig0033178:21658-21677 | Msa1451000:CDS | 40.0% | |
| CACCGTGCTAAGATATTCAA+CGG | - | tig0033178:21757-21776 | Msa1451000:CDS | 40.0% | |
| CACCGTTGAATATCTTAGCA+CGG | + | tig0033178:21762-21781 | None:intergenic | 40.0% | |
| ATGCAACTCAAATTGGTTGC+TGG | - | tig0033178:21865-21884 | Msa1451000:CDS | 40.0% | |
| ACGTACATAGTAAGCAGTGA+CGG | + | tig0033178:21905-21924 | None:intergenic | 40.0% | |
| ACGTTTGTGTGGAGAATGTA+AGG | + | tig0033178:22124-22143 | None:intergenic | 40.0% | |
| CTTGAGAAAACACGTTTGTG+TGG | + | tig0033178:22135-22154 | None:intergenic | 40.0% | |
| ! | CACACAAACGTGTTTTCTCA+AGG | - | tig0033178:22133-22152 | Msa1451000:intron | 40.0% |
| ! | AACGTGTTTTCTCAAGGCAA+AGG | - | tig0033178:22139-22158 | Msa1451000:intron | 40.0% |
| GAGAACAACAATTCTACCTC+TGG | - | tig0033178:22167-22186 | Msa1451000:CDS | 40.0% | |
| TAAGTGTGGAAGTTCTTGGT+GGG | + | tig0033178:22199-22218 | None:intergenic | 40.0% | |
| AGAGTAAGTGTGGAAGTTCT+TGG | + | tig0033178:22203-22222 | None:intergenic | 40.0% | |
| TGGTTGACAACATCCCAATA+AGG | - | tig0033178:22365-22384 | Msa1451000:intron | 40.0% | |
| ! | ATTGGTTGGTTCTTTGGGAA+AGG | + | tig0033178:22421-22440 | None:intergenic | 40.0% |
| !! | GTGGTTTGGTGAAAACTGAT+TGG | - | tig0033178:22488-22507 | Msa1451000:CDS | 40.0% |
| !! | GTAAGCTCTAAATGGTGCTT+TGG | + | tig0033178:22515-22534 | None:intergenic | 40.0% |
| !! | TTGCGGTAGTAAGCTCTAAA+TGG | + | tig0033178:22523-22542 | None:intergenic | 40.0% |
| TGCAGAATCAGAGAATGAAG+TGG | + | tig0033178:22578-22597 | None:intergenic | 40.0% | |
| GATCTTAAGCGATTTCCACA+AGG | - | tig0033178:22682-22701 | Msa1451000:CDS | 40.0% | |
| GTGTGACATAGGGTACGTTA+GGG | + | tig0033178:21507-21526 | None:intergenic | 45.0% | |
| TGTGTGACATAGGGTACGTT+AGG | + | tig0033178:21508-21527 | None:intergenic | 45.0% | |
| TGCAGAGCATGTAGCTATCA+AGG | + | tig0033178:21701-21720 | None:intergenic | 45.0% | |
| CGTGCTAAGATATTCAACGG+TGG | - | tig0033178:21760-21779 | Msa1451000:CDS | 45.0% | |
| CTTTCTCTCGACAAAGTCTC+CGG | - | tig0033178:21796-21815 | Msa1451000:CDS | 45.0% | |
| GTGATGACAACTGCACCATA+AGG | + | tig0033178:22045-22064 | None:intergenic | 45.0% | |
| ATGGTGCAGTTGTCATCACA+AGG | - | tig0033178:22046-22065 | Msa1451000:intron | 45.0% | |
| TGGTGCAGTTGTCATCACAA+GGG | - | tig0033178:22047-22066 | Msa1451000:intron | 45.0% | |
| GAGTTCTTGGGAAACGTTAG+CGG | - | tig0033178:22094-22113 | Msa1451000:intron | 45.0% | |
| GTAAGTGTGGAAGTTCTTGG+TGG | + | tig0033178:22200-22219 | None:intergenic | 45.0% | |
| ! | AGTTTTCACCAAACCACCTC+TGG | + | tig0033178:22485-22504 | None:intergenic | 45.0% |
| AGCAACGAGCTTGATGCTTA+TGG | - | tig0033178:22604-22623 | Msa1451000:CDS | 45.0% | |
| ! | AAGGTATTCCTGCTGAGTGT+AGG | - | tig0033178:22701-22720 | Msa1451000:CDS | 45.0% |
| GTGTGACATAGGGTACGTTA+GGG | + | tig0033178:21507-21526 | None:intergenic | 45.0% | |
| TGTGTGACATAGGGTACGTT+AGG | + | tig0033178:21508-21527 | None:intergenic | 45.0% | |
| TGCAGAGCATGTAGCTATCA+AGG | + | tig0033178:21701-21720 | None:intergenic | 45.0% | |
| CGTGCTAAGATATTCAACGG+TGG | - | tig0033178:21760-21779 | Msa1451000:CDS | 45.0% | |
| CTTTCTCTCGACAAAGTCTC+CGG | - | tig0033178:21796-21815 | Msa1451000:CDS | 45.0% | |
| GTGATGACAACTGCACCATA+AGG | + | tig0033178:22045-22064 | None:intergenic | 45.0% | |
| ATGGTGCAGTTGTCATCACA+AGG | - | tig0033178:22046-22065 | Msa1451000:intron | 45.0% | |
| TGGTGCAGTTGTCATCACAA+GGG | - | tig0033178:22047-22066 | Msa1451000:intron | 45.0% | |
| GAGTTCTTGGGAAACGTTAG+CGG | - | tig0033178:22094-22113 | Msa1451000:intron | 45.0% | |
| GTAAGTGTGGAAGTTCTTGG+TGG | + | tig0033178:22200-22219 | None:intergenic | 45.0% | |
| ! | AGTTTTCACCAAACCACCTC+TGG | + | tig0033178:22485-22504 | None:intergenic | 45.0% |
| AGCAACGAGCTTGATGCTTA+TGG | - | tig0033178:22604-22623 | Msa1451000:CDS | 45.0% | |
| ! | AAGGTATTCCTGCTGAGTGT+AGG | - | tig0033178:22701-22720 | Msa1451000:CDS | 45.0% |
| TTGGTTGCTGGAAACTCTGC+TGG | - | tig0033178:21877-21896 | Msa1451000:CDS | 50.0% | |
| TCTTGGTGGGATCAAACCAG+AGG | + | tig0033178:22186-22205 | None:intergenic | 50.0% | |
| !! | TCTCTGGAACGCCGATGATT+GGG | - | tig0033178:22456-22475 | Msa1451000:intron | 50.0% |
| ACCTCTGGTAGCCCAATCAT+CGG | + | tig0033178:22470-22489 | None:intergenic | 50.0% | |
| CACTCAGCAGGAATACCTTG+TGG | + | tig0033178:22700-22719 | None:intergenic | 50.0% | |
| TTGGTTGCTGGAAACTCTGC+TGG | - | tig0033178:21877-21896 | Msa1451000:CDS | 50.0% | |
| TCTTGGTGGGATCAAACCAG+AGG | + | tig0033178:22186-22205 | None:intergenic | 50.0% | |
| !! | TCTCTGGAACGCCGATGATT+GGG | - | tig0033178:22456-22475 | Msa1451000:intron | 50.0% |
| ACCTCTGGTAGCCCAATCAT+CGG | + | tig0033178:22470-22489 | None:intergenic | 50.0% | |
| CACTCAGCAGGAATACCTTG+TGG | + | tig0033178:22700-22719 | None:intergenic | 50.0% | |
| !! | GTCTCTGGAACGCCGATGAT+TGG | - | tig0033178:22455-22474 | Msa1451000:intron | 55.0% |
| GATGATTGGGCTACCAGAGG+TGG | - | tig0033178:22469-22488 | Msa1451000:intron | 55.0% | |
| TTGGGCTACCAGAGGTGGTT+TGG | - | tig0033178:22474-22493 | Msa1451000:intron | 55.0% | |
| CTTGAACGCCTACACTCAGC+AGG | + | tig0033178:22712-22731 | None:intergenic | 55.0% | |
| CTGCTGAGTGTAGGCGTTCA+AGG | - | tig0033178:22710-22729 | Msa1451000:CDS | 55.0% | |
| !! | GTCTCTGGAACGCCGATGAT+TGG | - | tig0033178:22455-22474 | Msa1451000:intron | 55.0% |
| GATGATTGGGCTACCAGAGG+TGG | - | tig0033178:22469-22488 | Msa1451000:intron | 55.0% | |
| TTGGGCTACCAGAGGTGGTT+TGG | - | tig0033178:22474-22493 | Msa1451000:intron | 55.0% | |
| CTTGAACGCCTACACTCAGC+AGG | + | tig0033178:22712-22731 | None:intergenic | 55.0% | |
| CTGCTGAGTGTAGGCGTTCA+AGG | - | tig0033178:22710-22729 | Msa1451000:CDS | 55.0% | |
| AGGGTGGTGAGACGCGTGAA+TGG | + | tig0033178:21461-21480 | None:intergenic | 60.0% | |
| CTCGACAAAGTCTCCGGCTC+TGG | - | tig0033178:21802-21821 | Msa1451000:CDS | 60.0% | |
| ! | CTTGGACTGGAAGCCAGAGC+CGG | + | tig0033178:21818-21837 | None:intergenic | 60.0% |
| GCCGATGATTGGGCTACCAG+AGG | - | tig0033178:22466-22485 | Msa1451000:intron | 60.0% | |
| AGGGTGGTGAGACGCGTGAA+TGG | + | tig0033178:21461-21480 | None:intergenic | 60.0% | |
| CTCGACAAAGTCTCCGGCTC+TGG | - | tig0033178:21802-21821 | Msa1451000:CDS | 60.0% | |
| ! | CTTGGACTGGAAGCCAGAGC+CGG | + | tig0033178:21818-21837 | None:intergenic | 60.0% |
| GCCGATGATTGGGCTACCAG+AGG | - | tig0033178:22466-22485 | Msa1451000:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0033178 | gene | 21440 | 22953 | 21440 | ID=Msa1451000;Name=Msa1451000 |
| tig0033178 | mRNA | 21440 | 22953 | 21440 | ID=Msa1451000-mRNA-1;Parent=Msa1451000;Name=Msa1451000-mRNA-1;_AED=0.01;_eAED=0.01;_QI=200|1|1|1|1|1|3|215|283 |
| tig0033178 | exon | 21440 | 22033 | 21440 | ID=Msa1451000-mRNA-1:exon:17779;Parent=Msa1451000-mRNA-1 |
| tig0033178 | exon | 22145 | 22338 | 22145 | ID=Msa1451000-mRNA-1:exon:17778;Parent=Msa1451000-mRNA-1 |
| tig0033178 | exon | 22475 | 22953 | 22475 | ID=Msa1451000-mRNA-1:exon:17777;Parent=Msa1451000-mRNA-1 |
| tig0033178 | five_prime_UTR | 22754 | 22953 | 22754 | ID=Msa1451000-mRNA-1:five_prime_utr;Parent=Msa1451000-mRNA-1 |
| tig0033178 | CDS | 22475 | 22753 | 22475 | ID=Msa1451000-mRNA-1:cds;Parent=Msa1451000-mRNA-1 |
| tig0033178 | CDS | 22145 | 22338 | 22145 | ID=Msa1451000-mRNA-1:cds;Parent=Msa1451000-mRNA-1 |
| tig0033178 | CDS | 21655 | 22033 | 21655 | ID=Msa1451000-mRNA-1:cds;Parent=Msa1451000-mRNA-1 |
| tig0033178 | three_prime_UTR | 21440 | 21654 | 21440 | ID=Msa1451000-mRNA-1:three_prime_utr;Parent=Msa1451000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
