Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373050 | XP_003601714.1 | 98.582 | 282 | 4 | 0 | 1 | 282 | 1 | 282 | 0.0 | 583 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373050 | sp|P35694|XTH2_SOYBN | 83.099 | 284 | 42 | 2 | 1 | 279 | 1 | 283 | 1.18e-176 | 491 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373050 | G7JAU8 | 98.582 | 282 | 4 | 0 | 1 | 282 | 1 | 282 | 0.0 | 583 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046970 | Msa0373050 | 0.829682 | 4.491216e-55 | -8.615850e-47 |
| Msa0198210 | Msa0373050 | 0.838493 | 2.784009e-57 | -8.615850e-47 |
| Msa0207680 | Msa0373050 | 0.836458 | 9.249204e-57 | -8.615850e-47 |
| Msa0207690 | Msa0373050 | 0.810170 | 1.316456e-50 | -8.615850e-47 |
| Msa0209360 | Msa0373050 | 0.825661 | 4.151515e-54 | -8.615850e-47 |
| Msa0371510 | Msa0373050 | 0.848833 | 4.762700e-60 | -8.615850e-47 |
| Msa0373050 | Msa0373060 | 0.968603 | 6.515162e-129 | -8.615850e-47 |
| Msa0373050 | Msa0380980 | 0.827929 | 1.192500e-54 | -8.615850e-47 |
| Msa0373050 | Msa0381100 | 0.821760 | 3.401723e-53 | -8.615850e-47 |
| Msa0373050 | Msa0382460 | 0.807788 | 4.259142e-50 | -8.615850e-47 |
| Msa0373050 | Msa0419730 | 0.827019 | 1.971231e-54 | -8.615850e-47 |
| Msa0373050 | Msa0419860 | 0.822844 | 1.906066e-53 | -8.615850e-47 |
| Msa0373050 | Msa0421580 | 0.933831 | 1.029096e-95 | -8.615850e-47 |
| Msa0373050 | Msa0421590 | 0.914478 | 1.828694e-84 | -8.615850e-47 |
| Msa0373050 | Msa0450030 | 0.837068 | 6.463643e-57 | -8.615850e-47 |
| Msa0373050 | Msa0467590 | 0.909126 | 8.035758e-82 | -8.615850e-47 |
| Msa0373050 | Msa0467600 | 0.948686 | 5.767126e-107 | -8.615850e-47 |
| Msa0373050 | Msa0476960 | 0.810048 | 1.399158e-50 | -8.615850e-47 |
| Msa0373050 | Msa0553090 | 0.826761 | 2.271757e-54 | -8.615850e-47 |
| Msa0373050 | Msa0555280 | 0.833165 | 6.237215e-56 | -8.615850e-47 |
| Msa0373050 | Msa0573650 | 0.872335 | 3.442893e-67 | -8.615850e-47 |
| Msa0373050 | Msa0575380 | 0.842831 | 2.033032e-58 | -8.615850e-47 |
| Msa0373050 | Msa0576180 | 0.846920 | 1.603339e-59 | -8.615850e-47 |
| Msa0373050 | Msa0607120 | 0.810682 | 1.020800e-50 | -8.615850e-47 |
| Msa0373050 | Msa0608820 | 0.827331 | 1.659422e-54 | -8.615850e-47 |
| Msa0373050 | Msa0627580 | 0.822772 | 1.980863e-53 | -8.615850e-47 |
| Msa0373050 | Msa0647320 | 0.869494 | 2.969280e-66 | -8.615850e-47 |
| Msa0373050 | Msa0690190 | 0.853127 | 2.934917e-61 | -8.615850e-47 |
| Msa0373050 | Msa0690930 | 0.806037 | 9.991969e-50 | -8.615850e-47 |
| Msa0373050 | Msa0691610 | 0.820248 | 7.582604e-53 | -8.615850e-47 |
| Msa0373050 | Msa0707490 | 0.873274 | 1.669895e-67 | -8.615850e-47 |
| Msa0373050 | Msa0758400 | 0.805960 | 1.037392e-49 | -8.615850e-47 |
| Msa0373050 | Msa0773960 | 0.800349 | 1.502456e-48 | -8.615850e-47 |
| Msa0373050 | Msa0930210 | 0.846471 | 2.127973e-59 | -8.615850e-47 |
| Msa0373050 | Msa1088150 | 0.939653 | 8.843847e-100 | -8.615850e-47 |
| Msa0373050 | Msa1088160 | 0.960868 | 4.786602e-119 | -8.615850e-47 |
| Msa0373050 | Msa1236860 | -0.803645 | 3.158564e-49 | -8.615850e-47 |
| Msa0373050 | Msa1412500 | 0.810854 | 9.368935e-51 | -8.615850e-47 |
| Msa0373050 | Msa1451000 | 0.879777 | 9.446104e-70 | -8.615850e-47 |
| Msa0242820 | Msa0373050 | 0.830704 | 2.527809e-55 | -8.615850e-47 |
| Msa0287640 | Msa0373050 | 0.827166 | 1.818140e-54 | -8.615850e-47 |
| Msa0287660 | Msa0373050 | 0.837866 | 4.036611e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373050 | MtrunA17_Chr3g0122031 | 98.582 | 282 | 4 | 0 | 1 | 282 | 1 | 282 | 0.0 | 583 |
| Msa0373050 | MtrunA17_Chr3g0122021 | 98.227 | 282 | 5 | 0 | 1 | 282 | 1 | 282 | 0.0 | 580 |
| Msa0373050 | MtrunA17_Chr8g0377841 | 86.245 | 269 | 35 | 2 | 10 | 277 | 14 | 281 | 5.66e-178 | 491 |
| Msa0373050 | MtrunA17_Chr8g0389641 | 80.851 | 282 | 17 | 2 | 1 | 281 | 1 | 246 | 1.13e-166 | 461 |
| Msa0373050 | MtrunA17_Chr4g0072611 | 72.426 | 272 | 67 | 2 | 14 | 278 | 11 | 281 | 6.47e-144 | 405 |
| Msa0373050 | MtrunA17_Chr7g0258911 | 72.593 | 270 | 68 | 1 | 14 | 277 | 10 | 279 | 7.08e-142 | 400 |
| Msa0373050 | MtrunA17_Chr4g0072671 | 72.285 | 267 | 64 | 1 | 21 | 277 | 19 | 285 | 1.53e-139 | 394 |
| Msa0373050 | MtrunA17_Chr4g0072601 | 63.958 | 283 | 96 | 1 | 1 | 277 | 1 | 283 | 3.72e-133 | 378 |
| Msa0373050 | MtrunA17_Chr2g0299061 | 65.468 | 278 | 85 | 1 | 11 | 277 | 9 | 286 | 1.86e-132 | 377 |
| Msa0373050 | MtrunA17_Chr4g0071341 | 67.681 | 263 | 78 | 1 | 22 | 277 | 19 | 281 | 4.16e-131 | 373 |
| Msa0373050 | MtrunA17_Chr4g0072681 | 73.516 | 219 | 47 | 2 | 70 | 277 | 25 | 243 | 1.70e-115 | 332 |
| Msa0373050 | MtrunA17_Chr5g0443391 | 52.465 | 284 | 132 | 2 | 1 | 281 | 1 | 284 | 1.51e-106 | 311 |
| Msa0373050 | MtrunA17_Chr7g0252631 | 52.740 | 292 | 126 | 3 | 1 | 281 | 1 | 291 | 1.99e-106 | 311 |
| Msa0373050 | MtrunA17_Chr7g0252621 | 52.069 | 290 | 127 | 3 | 1 | 279 | 1 | 289 | 9.30e-105 | 306 |
| Msa0373050 | MtrunA17_Chr6g0461731 | 51.712 | 292 | 123 | 4 | 7 | 281 | 24 | 314 | 1.60e-103 | 304 |
| Msa0373050 | MtrunA17_Chr7g0252601 | 50.342 | 292 | 133 | 3 | 1 | 281 | 1 | 291 | 9.01e-103 | 301 |
| Msa0373050 | MtrunA17_Chr6g0461761 | 51.027 | 292 | 131 | 3 | 1 | 281 | 1 | 291 | 1.06e-102 | 301 |
| Msa0373050 | MtrunA17_Chr6g0486581 | 49.291 | 282 | 128 | 3 | 14 | 282 | 9 | 288 | 2.01e-97 | 288 |
| Msa0373050 | MtrunA17_Chr3g0096651 | 51.351 | 259 | 119 | 2 | 26 | 279 | 28 | 284 | 2.28e-96 | 285 |
| Msa0373050 | MtrunA17_Chr4g0023961 | 49.286 | 280 | 122 | 5 | 14 | 277 | 13 | 288 | 7.16e-95 | 281 |
| Msa0373050 | MtrunA17_Chr2g0323161 | 47.797 | 295 | 128 | 7 | 1 | 279 | 4 | 288 | 2.40e-94 | 280 |
| Msa0373050 | MtrunA17_Chr1g0206681 | 47.810 | 274 | 133 | 2 | 17 | 282 | 25 | 296 | 7.38e-94 | 279 |
| Msa0373050 | MtrunA17_Chr4g0054431 | 48.387 | 279 | 135 | 4 | 6 | 277 | 11 | 287 | 1.26e-93 | 278 |
| Msa0373050 | MtrunA17_Chr4g0054451 | 48.000 | 275 | 135 | 3 | 10 | 277 | 16 | 289 | 1.57e-93 | 278 |
| Msa0373050 | MtrunA17_Chr1g0206081 | 44.604 | 278 | 142 | 3 | 11 | 277 | 18 | 294 | 5.79e-84 | 254 |
| Msa0373050 | MtrunA17_Chr8g0390201 | 53.500 | 200 | 83 | 3 | 93 | 282 | 15 | 214 | 4.92e-74 | 225 |
| Msa0373050 | MtrunA17_Chr8g0340001 | 45.763 | 236 | 113 | 4 | 52 | 277 | 1 | 231 | 1.00e-70 | 218 |
| Msa0373050 | MtrunA17_Chr7g0264731 | 41.569 | 255 | 133 | 5 | 25 | 268 | 34 | 283 | 7.02e-63 | 199 |
| Msa0373050 | MtrunA17_Chr2g0327411 | 40.684 | 263 | 137 | 6 | 18 | 268 | 46 | 301 | 4.12e-60 | 193 |
| Msa0373050 | MtrunA17_Chr4g0028221 | 41.603 | 262 | 136 | 6 | 27 | 277 | 49 | 304 | 4.43e-60 | 193 |
| Msa0373050 | MtrunA17_Chr1g0180451 | 39.773 | 264 | 142 | 6 | 25 | 277 | 37 | 294 | 5.96e-59 | 189 |
| Msa0373050 | MtrunA17_Chr2g0303861 | 38.610 | 259 | 142 | 7 | 28 | 278 | 29 | 278 | 6.16e-56 | 181 |
| Msa0373050 | MtrunA17_Chr8g0375981 | 36.782 | 261 | 153 | 5 | 28 | 277 | 31 | 290 | 6.11e-55 | 180 |
| Msa0373050 | MtrunA17_Chr1g0161951 | 37.931 | 261 | 149 | 6 | 28 | 277 | 33 | 291 | 1.67e-52 | 174 |
| Msa0373050 | MtrunA17_Chr5g0410621 | 36.090 | 266 | 152 | 7 | 28 | 277 | 42 | 305 | 1.53e-50 | 169 |
| Msa0373050 | MtrunA17_Chr8g0365231 | 35.338 | 266 | 149 | 8 | 32 | 278 | 50 | 311 | 3.56e-50 | 167 |
| Msa0373050 | MtrunA17_Chr4g0072641 | 64.167 | 120 | 35 | 1 | 158 | 277 | 37 | 148 | 7.54e-50 | 161 |
| Msa0373050 | MtrunA17_Chr7g0235541 | 42.365 | 203 | 101 | 5 | 75 | 265 | 1 | 199 | 8.84e-49 | 160 |
| Msa0373050 | MtrunA17_Chr2g0303721 | 34.921 | 252 | 144 | 6 | 28 | 271 | 30 | 269 | 1.91e-47 | 159 |
| Msa0373050 | MtrunA17_Chr8g0382041 | 34.601 | 263 | 157 | 5 | 28 | 277 | 34 | 294 | 2.28e-44 | 153 |
| Msa0373050 | MtrunA17_Chr4g0072631 | 60.000 | 70 | 27 | 1 | 7 | 75 | 9 | 78 | 1.29e-21 | 87.4 |
| Msa0373050 | MtrunA17_Chr8g0390181 | 46.809 | 94 | 45 | 2 | 5 | 95 | 2 | 93 | 1.47e-18 | 79.0 |
| Msa0373050 | MtrunA17_Chr8g0374231 | 41.176 | 102 | 51 | 3 | 184 | 277 | 1 | 101 | 8.01e-18 | 77.0 |
| Msa0373050 | MtrunA17_Chr8g0350711 | 32.558 | 172 | 108 | 5 | 50 | 219 | 54 | 219 | 1.67e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373050 | AT3G23730.1 | 72.028 | 286 | 69 | 2 | 7 | 281 | 5 | 290 | 2.40e-164 | 457 |
| Msa0373050 | AT4G14130.1 | 73.264 | 288 | 70 | 2 | 1 | 281 | 1 | 288 | 2.90e-163 | 455 |
| Msa0373050 | AT4G25810.1 | 65.455 | 275 | 87 | 1 | 11 | 277 | 9 | 283 | 1.45e-133 | 379 |
| Msa0373050 | AT4G30270.1 | 64.885 | 262 | 84 | 1 | 16 | 277 | 12 | 265 | 2.24e-129 | 368 |
| Msa0373050 | AT5G57550.1 | 65.370 | 257 | 86 | 1 | 25 | 278 | 27 | 283 | 5.09e-129 | 368 |
| Msa0373050 | AT5G57560.1 | 62.455 | 277 | 91 | 2 | 10 | 277 | 9 | 281 | 6.27e-129 | 368 |
| Msa0373050 | AT5G57530.1 | 63.258 | 264 | 81 | 2 | 25 | 277 | 24 | 282 | 6.45e-124 | 355 |
| Msa0373050 | AT5G57540.1 | 62.500 | 264 | 83 | 3 | 25 | 277 | 23 | 281 | 2.93e-122 | 351 |
| Msa0373050 | AT2G18800.1 | 57.857 | 280 | 99 | 2 | 17 | 277 | 17 | 296 | 6.05e-121 | 348 |
| Msa0373050 | AT4G25820.1 | 62.782 | 266 | 91 | 2 | 20 | 278 | 22 | 286 | 6.52e-120 | 345 |
| Msa0373050 | AT5G48070.1 | 57.934 | 271 | 111 | 2 | 10 | 277 | 11 | 281 | 6.46e-118 | 340 |
| Msa0373050 | AT4G30290.1 | 58.303 | 271 | 110 | 2 | 10 | 277 | 6 | 276 | 8.75e-110 | 319 |
| Msa0373050 | AT4G30280.1 | 57.778 | 270 | 111 | 2 | 11 | 277 | 12 | 281 | 2.46e-109 | 318 |
| Msa0373050 | AT1G65310.2 | 60.000 | 260 | 101 | 2 | 21 | 277 | 44 | 303 | 2.30e-108 | 316 |
| Msa0373050 | AT1G65310.1 | 60.000 | 260 | 101 | 2 | 21 | 277 | 22 | 281 | 2.46e-108 | 315 |
| Msa0373050 | AT5G13870.2 | 54.406 | 261 | 111 | 2 | 28 | 281 | 32 | 291 | 1.07e-101 | 299 |
| Msa0373050 | AT5G13870.1 | 54.406 | 261 | 111 | 2 | 28 | 281 | 32 | 291 | 1.07e-101 | 299 |
| Msa0373050 | AT5G13870.3 | 54.406 | 261 | 111 | 2 | 28 | 281 | 32 | 291 | 1.07e-101 | 299 |
| Msa0373050 | AT2G06850.1 | 52.281 | 285 | 122 | 3 | 10 | 281 | 11 | 294 | 7.95e-101 | 297 |
| Msa0373050 | AT4G03210.1 | 48.936 | 282 | 130 | 5 | 10 | 281 | 11 | 288 | 2.43e-96 | 285 |
| Msa0373050 | AT2G14620.1 | 46.181 | 288 | 140 | 2 | 10 | 282 | 12 | 299 | 8.64e-94 | 279 |
| Msa0373050 | AT2G06850.2 | 57.143 | 231 | 91 | 2 | 58 | 281 | 5 | 234 | 9.82e-93 | 274 |
| Msa0373050 | AT4G28850.1 | 47.902 | 286 | 133 | 5 | 10 | 282 | 10 | 292 | 1.03e-92 | 276 |
| Msa0373050 | AT5G65730.1 | 48.561 | 278 | 127 | 6 | 11 | 278 | 20 | 291 | 1.31e-91 | 273 |
| Msa0373050 | AT4G37800.1 | 48.120 | 266 | 126 | 4 | 21 | 277 | 27 | 289 | 7.69e-89 | 266 |
| Msa0373050 | AT4G03210.2 | 52.381 | 231 | 100 | 3 | 60 | 281 | 31 | 260 | 9.75e-87 | 260 |
| Msa0373050 | AT1G11545.1 | 45.357 | 280 | 139 | 4 | 11 | 277 | 21 | 299 | 2.52e-86 | 260 |
| Msa0373050 | AT2G14620.2 | 48.707 | 232 | 111 | 1 | 59 | 282 | 18 | 249 | 1.97e-82 | 248 |
| Msa0373050 | AT2G14620.3 | 49.327 | 223 | 105 | 1 | 68 | 282 | 16 | 238 | 2.54e-80 | 243 |
| Msa0373050 | AT4G13090.1 | 40.893 | 291 | 151 | 4 | 7 | 278 | 1 | 289 | 3.57e-75 | 231 |
| Msa0373050 | AT3G25050.1 | 41.313 | 259 | 139 | 3 | 28 | 277 | 35 | 289 | 3.28e-74 | 229 |
| Msa0373050 | AT4G13080.1 | 45.420 | 262 | 124 | 7 | 28 | 278 | 39 | 292 | 1.70e-72 | 224 |
| Msa0373050 | AT2G36870.1 | 42.857 | 266 | 135 | 6 | 25 | 279 | 40 | 299 | 2.83e-63 | 201 |
| Msa0373050 | AT3G44990.1 | 40.590 | 271 | 142 | 8 | 18 | 277 | 31 | 293 | 6.74e-58 | 187 |
| Msa0373050 | AT1G14720.1 | 34.783 | 299 | 170 | 7 | 7 | 281 | 4 | 301 | 1.97e-53 | 177 |
| Msa0373050 | AT1G32170.1 | 34.471 | 293 | 163 | 8 | 8 | 277 | 7 | 293 | 4.24e-53 | 176 |
| Msa0373050 | AT1G10550.1 | 36.029 | 272 | 139 | 8 | 32 | 277 | 47 | 309 | 4.60e-53 | 175 |
| Msa0373050 | AT2G01850.1 | 31.773 | 299 | 179 | 6 | 7 | 281 | 4 | 301 | 3.06e-50 | 169 |
| Msa0373050 | AT4G18990.1 | 34.601 | 263 | 140 | 7 | 50 | 282 | 62 | 322 | 1.69e-44 | 154 |
| Msa0373050 | AT3G48580.1 | 34.008 | 247 | 145 | 7 | 35 | 277 | 41 | 273 | 3.18e-43 | 149 |
| Msa0373050 | AT4G18990.2 | 33.755 | 237 | 121 | 8 | 77 | 282 | 17 | 248 | 4.27e-37 | 133 |
| Msa0373050 | AT3G48580.3 | 32.143 | 224 | 135 | 6 | 58 | 277 | 4 | 214 | 1.54e-36 | 130 |
| Msa0373050 | AT2G36870.2 | 43.262 | 141 | 70 | 3 | 25 | 157 | 40 | 178 | 2.57e-30 | 112 |
| Msa0373050 | AT3G48580.2 | 30.952 | 252 | 126 | 10 | 35 | 277 | 41 | 253 | 7.76e-28 | 108 |
Find 80 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGTCAAATTAATTAATA+TGG | 0.168434 | 3_1:-72016638 | Msa0373050:exon |
| ATTCTCATTGGTTGGTTCTT+TGG | 0.220550 | 3_1:+72015797 | None:intergenic |
| TTCTCATTGGTTGGTTCTTT+GGG | 0.221209 | 3_1:+72015798 | None:intergenic |
| TCGAAGAAAGAGTATTTATT+TGG | 0.223648 | 3_1:-72016430 | Msa0373050:CDS |
| GCATTCTTGAAGATCCTTAT+AGG | 0.241455 | 3_1:+72015842 | None:intergenic |
| ATTAATATGGCTTCTTCTAT+TGG | 0.241934 | 3_1:-72016625 | Msa0373050:exon |
| CAATATAACGAAAACTGATA+TGG | 0.325555 | 3_1:+72015322 | None:intergenic |
| AGGGTCTATATATATGTGTT+AGG | 0.332658 | 3_1:+72016735 | None:intergenic |
| CACTCAGCAGGAATACCTTC+TGG | 0.340561 | 3_1:+72015524 | None:intergenic |
| CATTCTTGAAGATCCTTATA+GGG | 0.350905 | 3_1:+72015843 | None:intergenic |
| TAGTTGATAACATCCCTATA+AGG | 0.361735 | 3_1:-72015856 | Msa0373050:CDS |
| GTCTCTGGAACGCTGATGAT+TGG | 0.365899 | 3_1:-72015766 | Msa0373050:CDS |
| TATTACTTACATAATGTGTT+GGG | 0.366572 | 3_1:+72015961 | None:intergenic |
| TTGCGGTAGTAAGCTGTAAA+TGG | 0.368145 | 3_1:+72015701 | None:intergenic |
| GAGAACAACAATTCTACCTT+TGG | 0.383624 | 3_1:-72016030 | Msa0373050:CDS |
| ACCAAGACTTTGATCTAACT+TGG | 0.385781 | 3_1:-72016534 | Msa0373050:CDS |
| ATTGGTTGGTTCTTTGGGAA+TGG | 0.395735 | 3_1:+72015803 | None:intergenic |
| ATGCAACTCAAACTTGTTGC+TGG | 0.403109 | 3_1:-72016397 | Msa0373050:CDS |
| AGCAATGAACTTGATGCTTA+TGG | 0.406721 | 3_1:-72015617 | Msa0373050:CDS |
| AGACTTGAATAGATTCTCAT+TGG | 0.409589 | 3_1:+72015785 | None:intergenic |
| TAGTCTCAATAGATACGAAC+AGG | 0.412845 | 3_1:+72015283 | None:intergenic |
| ATAAATACTCTTTCTTCGAT+TGG | 0.413180 | 3_1:+72016434 | None:intergenic |
| CTTGTTGCTGGAAATTCTGC+TGG | 0.421705 | 3_1:-72016385 | Msa0373050:CDS |
| TTCAAGAATGCTGAATCAAT+TGG | 0.430099 | 3_1:-72015830 | Msa0373050:CDS |
| TGAGAATCTATTCAAGTCTC+TGG | 0.437244 | 3_1:-72015781 | Msa0373050:CDS |
| AGAGTAAGTGTGGAAGTTCT+TGG | 0.438651 | 3_1:+72015997 | None:intergenic |
| CTAGACAAAACCTCGGGCTC+TGG | 0.447506 | 3_1:-72016460 | Msa0373050:CDS |
| TCCACACTTACTCTATCATC+TGG | 0.453939 | 3_1:-72015988 | Msa0373050:CDS |
| GTAAGCTGTAAATGGTGCTT+TGG | 0.464723 | 3_1:+72015709 | None:intergenic |
| TTGAATAGATTCTCATTGGT+TGG | 0.466553 | 3_1:+72015789 | None:intergenic |
| ATATTACTTACATAATGTGT+TGG | 0.469145 | 3_1:+72015960 | None:intergenic |
| TCTCTGGAACGCTGATGATT+GGG | 0.473167 | 3_1:-72015765 | Msa0373050:CDS |
| AGTCATGATAATTAGCTCCT+TGG | 0.482305 | 3_1:-72016581 | Msa0373050:CDS |
| CTGCTGAGTGCAAGCGTCCA+AGG | 0.485478 | 3_1:-72015511 | Msa0373050:CDS |
| TCATTGATCTCTCAGAACCT+TGG | 0.486786 | 3_1:+72015494 | None:intergenic |
| ACTCAGCAGGAATACCTTCT+GGG | 0.494454 | 3_1:+72015525 | None:intergenic |
| AAGTGTGGAAGTTCTTGGTT+GGG | 0.498153 | 3_1:+72016002 | None:intergenic |
| CTTGGACGCTTGCACTCAGC+AGG | 0.499944 | 3_1:+72015512 | None:intergenic |
| TGTGTTAGAATAAGAAAAGA+GGG | 0.499959 | 3_1:+72016716 | None:intergenic |
| TTGGGCTACAAGAGGTGGTT+TGG | 0.508778 | 3_1:-72015747 | Msa0373050:CDS |
| CCAAGACTTTGATCTAACTT+GGG | 0.509119 | 3_1:-72016533 | Msa0373050:CDS |
| TCTATATATATGTGTTAGGG+TGG | 0.509295 | 3_1:+72016739 | None:intergenic |
| ACGTTTGTATGAAGAATGTA+AGG | 0.516073 | 3_1:+72016076 | None:intergenic |
| CACCGTGCTAAGATATTCAA+TGG | 0.519496 | 3_1:-72016505 | Msa0373050:CDS |
| GGGTCTATATATATGTGTTA+GGG | 0.520206 | 3_1:+72016736 | None:intergenic |
| ATGTGTTAGAATAAGAAAAG+AGG | 0.522084 | 3_1:+72016715 | None:intergenic |
| CCCAAGTTAGATCAAAGTCT+TGG | 0.522663 | 3_1:+72016533 | None:intergenic |
| GGCATGAACAATATGCTGAT+TGG | 0.535335 | 3_1:-72016604 | Msa0373050:CDS |
| AAATCTATTTCATCATGAGT+TGG | 0.536081 | 3_1:+72016127 | None:intergenic |
| GAGTTCTTGGGAAATGTTAG+CGG | 0.540045 | 3_1:-72016103 | Msa0373050:CDS |
| ATGGTAGAAGAAGATTGAGA+TGG | 0.542822 | 3_1:-72015598 | Msa0373050:CDS |
| TAAGTGTGGAAGTTCTTGGT+TGG | 0.544799 | 3_1:+72016001 | None:intergenic |
| GTGGTTTGGTGAAAACTGAT+TGG | 0.548484 | 3_1:-72015733 | Msa0373050:CDS |
| AGAACCGTTATAAAATAAGA+TGG | 0.549036 | 3_1:+72015454 | None:intergenic |
| AACGAAAACTGATATGGAAG+TGG | 0.564414 | 3_1:+72015328 | None:intergenic |
| ACTCGGTAGCTTTGAAATTG+CGG | 0.568678 | 3_1:+72015684 | None:intergenic |
| ATTACTTACATAATGTGTTG+GGG | 0.569004 | 3_1:+72015962 | None:intergenic |
| TGCAGAATCAGAGAAGGAAG+TGG | 0.572405 | 3_1:+72015646 | None:intergenic |
| CGATTGGAAGCCAGAGCCCG+AGG | 0.573236 | 3_1:+72016450 | None:intergenic |
| ACTGATATGGAAGTGGTACA+AGG | 0.578583 | 3_1:+72015335 | None:intergenic |
| GATGATTGGGCTACAAGAGG+TGG | 0.583367 | 3_1:-72015752 | Msa0373050:CDS |
| TCCAGATGATAGAGTAAGTG+TGG | 0.584360 | 3_1:+72015987 | None:intergenic |
| AGCAGAACATGTAGCTACCA+AGG | 0.586171 | 3_1:+72016564 | None:intergenic |
| TGGTAGAAGAAGATTGAGAT+GGG | 0.586469 | 3_1:-72015597 | Msa0373050:CDS |
| TCTTGGTTGGGTCAAACCAA+AGG | 0.586504 | 3_1:+72016014 | None:intergenic |
| CTTTCTCTAGACAAAACCTC+GGG | 0.590397 | 3_1:-72016466 | Msa0373050:CDS |
| ATGTAATTGTTGTGAAGTGA+AGG | 0.598936 | 3_1:+72016692 | None:intergenic |
| CTATATATATGTGTTAGGGT+GGG | 0.608328 | 3_1:+72016740 | None:intergenic |
| TCTTTCTCTAGACAAAACCT+CGG | 0.610000 | 3_1:-72016467 | Msa0373050:CDS |
| CAAGACTTTGATCTAACTTG+GGG | 0.623881 | 3_1:-72016532 | Msa0373050:CDS |
| TTGCAATGCAGAATCAGAGA+AGG | 0.624929 | 3_1:+72015640 | None:intergenic |
| ATCATAATAAATTAAAACAG+TGG | 0.628762 | 3_1:+72015413 | None:intergenic |
| CACCATTGAATATCTTAGCA+CGG | 0.635606 | 3_1:+72016503 | None:intergenic |
| GCTGATGATTGGGCTACAAG+AGG | 0.647339 | 3_1:-72015755 | Msa0373050:CDS |
| GATCTTAAGCGATTCCCAGA+AGG | 0.649786 | 3_1:-72015539 | Msa0373050:CDS |
| GGAAGAGATAGATGATAACT+CGG | 0.649852 | 3_1:+72015667 | None:intergenic |
| CGTGCTAAGATATTCAATGG+TGG | 0.692895 | 3_1:-72016502 | Msa0373050:CDS |
| ATGGTGCAGTTGTCATCACA+AGG | 0.694897 | 3_1:-72016151 | Msa0373050:intron |
| AGTCTCAATAGATACGAACA+GGG | 0.741708 | 3_1:+72015284 | None:intergenic |
| CATTGAATATCTTAGCACGG+TGG | 0.785980 | 3_1:+72016506 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAAATAAAGTTACTTT+TGG | + | chr3_1:72015750-72015769 | None:intergenic | 10.0% |
| !!! | ATTTTAAATAAAGTTACTTT+TGG | + | chr3_1:72015750-72015769 | None:intergenic | 10.0% |
| !! | ATCATAATAAATTAAAACAG+TGG | + | chr3_1:72016612-72016631 | None:intergenic | 15.0% |
| !!! | TATATTCCTCTATATTTTTT+TGG | - | chr3_1:72016644-72016663 | Msa0373050:five_prime_UTR | 15.0% |
| !! | ATCATAATAAATTAAAACAG+TGG | + | chr3_1:72016612-72016631 | None:intergenic | 15.0% |
| !!! | TATATTCCTCTATATTTTTT+TGG | - | chr3_1:72016644-72016663 | Msa0373050:five_prime_UTR | 15.0% |
| !! | CTCTGTCAAATTAATTAATA+TGG | - | chr3_1:72015384-72015403 | Msa0373050:three_prime_UTR | 20.0% |
| !! | AATATATGGTATACTATATG+AGG | + | chr3_1:72015716-72015735 | None:intergenic | 20.0% |
| !! | TGGAAATGAATTAGAATATA+TGG | + | chr3_1:72015730-72015749 | None:intergenic | 20.0% |
| !!! | TTTTGTATTGTGGTAAATAA+CGG | - | chr3_1:72015834-72015853 | Msa0373050:CDS | 20.0% |
| !! | TATTACTTACATAATGTGTT+GGG | + | chr3_1:72016064-72016083 | None:intergenic | 20.0% |
| !! | ATATTACTTACATAATGTGT+TGG | + | chr3_1:72016065-72016084 | None:intergenic | 20.0% |
| !!! | ATAGCCATCTTATTTTATAA+CGG | - | chr3_1:72016564-72016583 | Msa0373050:CDS | 20.0% |
| !! | CTCTGTCAAATTAATTAATA+TGG | - | chr3_1:72015384-72015403 | Msa0373050:three_prime_UTR | 20.0% |
| !! | AATATATGGTATACTATATG+AGG | + | chr3_1:72015716-72015735 | None:intergenic | 20.0% |
| !! | TGGAAATGAATTAGAATATA+TGG | + | chr3_1:72015730-72015749 | None:intergenic | 20.0% |
| !!! | TTTTGTATTGTGGTAAATAA+CGG | - | chr3_1:72015834-72015853 | Msa0373050:CDS | 20.0% |
| !! | TATTACTTACATAATGTGTT+GGG | + | chr3_1:72016064-72016083 | None:intergenic | 20.0% |
| !! | ATATTACTTACATAATGTGT+TGG | + | chr3_1:72016065-72016084 | None:intergenic | 20.0% |
| !!! | ATAGCCATCTTATTTTATAA+CGG | - | chr3_1:72016564-72016583 | Msa0373050:CDS | 20.0% |
| ! | TGTGTTAGAATAAGAAAAGA+GGG | + | chr3_1:72015309-72015328 | None:intergenic | 25.0% |
| ! | ATGTGTTAGAATAAGAAAAG+AGG | + | chr3_1:72015310-72015329 | None:intergenic | 25.0% |
| ! | ATTAATATGGCTTCTTCTAT+TGG | - | chr3_1:72015397-72015416 | Msa0373050:three_prime_UTR | 25.0% |
| ! | ATAAATACTCTTTCTTCGAT+TGG | + | chr3_1:72015591-72015610 | None:intergenic | 25.0% |
| !!! | TCGAAGAAAGAGTATTTATT+TGG | - | chr3_1:72015592-72015611 | Msa0373050:CDS | 25.0% |
| ! | AAATCTATTTCATCATGAGT+TGG | + | chr3_1:72015898-72015917 | None:intergenic | 25.0% |
| !!! | TGAAATAGATTTTGAGTTCT+TGG | - | chr3_1:72015906-72015925 | Msa0373050:intron | 25.0% |
| !!! | GAAATAGATTTTGAGTTCTT+GGG | - | chr3_1:72015907-72015926 | Msa0373050:intron | 25.0% |
| ! | ATTACTTACATAATGTGTTG+GGG | + | chr3_1:72016063-72016082 | None:intergenic | 25.0% |
| ! | AGAACCGTTATAAAATAAGA+TGG | + | chr3_1:72016571-72016590 | None:intergenic | 25.0% |
| !!! | ATTCCTCTATATTTTTTTGG+TGG | - | chr3_1:72016647-72016666 | Msa0373050:five_prime_UTR | 25.0% |
| ! | TAACCACCAAAAAAATATAG+AGG | + | chr3_1:72016653-72016672 | None:intergenic | 25.0% |
| ! | CAATATAACGAAAACTGATA+TGG | + | chr3_1:72016703-72016722 | None:intergenic | 25.0% |
| ! | TGTGTTAGAATAAGAAAAGA+GGG | + | chr3_1:72015309-72015328 | None:intergenic | 25.0% |
| ! | ATGTGTTAGAATAAGAAAAG+AGG | + | chr3_1:72015310-72015329 | None:intergenic | 25.0% |
| ! | ATTAATATGGCTTCTTCTAT+TGG | - | chr3_1:72015397-72015416 | Msa0373050:three_prime_UTR | 25.0% |
| ! | ATAAATACTCTTTCTTCGAT+TGG | + | chr3_1:72015591-72015610 | None:intergenic | 25.0% |
| !!! | TCGAAGAAAGAGTATTTATT+TGG | - | chr3_1:72015592-72015611 | Msa0373050:CDS | 25.0% |
| ! | AAATCTATTTCATCATGAGT+TGG | + | chr3_1:72015898-72015917 | None:intergenic | 25.0% |
| !!! | TGAAATAGATTTTGAGTTCT+TGG | - | chr3_1:72015906-72015925 | Msa0373050:intron | 25.0% |
| !!! | GAAATAGATTTTGAGTTCTT+GGG | - | chr3_1:72015907-72015926 | Msa0373050:intron | 25.0% |
| ! | ATTACTTACATAATGTGTTG+GGG | + | chr3_1:72016063-72016082 | None:intergenic | 25.0% |
| ! | AGAACCGTTATAAAATAAGA+TGG | + | chr3_1:72016571-72016590 | None:intergenic | 25.0% |
| !!! | ATTCCTCTATATTTTTTTGG+TGG | - | chr3_1:72016647-72016666 | Msa0373050:five_prime_UTR | 25.0% |
| ! | TAACCACCAAAAAAATATAG+AGG | + | chr3_1:72016653-72016672 | None:intergenic | 25.0% |
| ! | CAATATAACGAAAACTGATA+TGG | + | chr3_1:72016703-72016722 | None:intergenic | 25.0% |
| CTATATATATGTGTTAGGGT+GGG | + | chr3_1:72015285-72015304 | None:intergenic | 30.0% | |
| TCTATATATATGTGTTAGGG+TGG | + | chr3_1:72015286-72015305 | None:intergenic | 30.0% | |
| GGGTCTATATATATGTGTTA+GGG | + | chr3_1:72015289-72015308 | None:intergenic | 30.0% | |
| AGGGTCTATATATATGTGTT+AGG | + | chr3_1:72015290-72015309 | None:intergenic | 30.0% | |
| ATGTAATTGTTGTGAAGTGA+AGG | + | chr3_1:72015333-72015352 | None:intergenic | 30.0% | |
| CTATATGAGGAAGTAAAGAA+AGG | + | chr3_1:72015703-72015722 | None:intergenic | 30.0% | |
| ! | TTGCTTCTTCTTTTGTATTG+TGG | - | chr3_1:72015824-72015843 | Msa0373050:CDS | 30.0% |
| AACGGTACTATATGCATATA+TGG | - | chr3_1:72015852-72015871 | Msa0373050:CDS | 30.0% | |
| ACGTTTGTATGAAGAATGTA+AGG | + | chr3_1:72015949-72015968 | None:intergenic | 30.0% | |
| !! | TAGTTATACGAACTTGTTAG+CGG | + | chr3_1:72016134-72016153 | None:intergenic | 30.0% |
| !! | TAGTTGATAACATCCCTATA+AGG | - | chr3_1:72016166-72016185 | Msa0373050:intron | 30.0% |
| CATTCTTGAAGATCCTTATA+GGG | + | chr3_1:72016182-72016201 | None:intergenic | 30.0% | |
| TTCAAGAATGCTGAATCAAT+TGG | - | chr3_1:72016192-72016211 | Msa0373050:intron | 30.0% | |
| TTGAATAGATTCTCATTGGT+TGG | + | chr3_1:72016236-72016255 | None:intergenic | 30.0% | |
| AGACTTGAATAGATTCTCAT+TGG | + | chr3_1:72016240-72016259 | None:intergenic | 30.0% | |
| CTATATATATGTGTTAGGGT+GGG | + | chr3_1:72015285-72015304 | None:intergenic | 30.0% | |
| TCTATATATATGTGTTAGGG+TGG | + | chr3_1:72015286-72015305 | None:intergenic | 30.0% | |
| GGGTCTATATATATGTGTTA+GGG | + | chr3_1:72015289-72015308 | None:intergenic | 30.0% | |
| AGGGTCTATATATATGTGTT+AGG | + | chr3_1:72015290-72015309 | None:intergenic | 30.0% | |
| ATGTAATTGTTGTGAAGTGA+AGG | + | chr3_1:72015333-72015352 | None:intergenic | 30.0% | |
| CTATATGAGGAAGTAAAGAA+AGG | + | chr3_1:72015703-72015722 | None:intergenic | 30.0% | |
| ! | TTGCTTCTTCTTTTGTATTG+TGG | - | chr3_1:72015824-72015843 | Msa0373050:CDS | 30.0% |
| AACGGTACTATATGCATATA+TGG | - | chr3_1:72015852-72015871 | Msa0373050:CDS | 30.0% | |
| ACGTTTGTATGAAGAATGTA+AGG | + | chr3_1:72015949-72015968 | None:intergenic | 30.0% | |
| !! | TAGTTATACGAACTTGTTAG+CGG | + | chr3_1:72016134-72016153 | None:intergenic | 30.0% |
| !! | TAGTTGATAACATCCCTATA+AGG | - | chr3_1:72016166-72016185 | Msa0373050:intron | 30.0% |
| CATTCTTGAAGATCCTTATA+GGG | + | chr3_1:72016182-72016201 | None:intergenic | 30.0% | |
| TTCAAGAATGCTGAATCAAT+TGG | - | chr3_1:72016192-72016211 | Msa0373050:intron | 30.0% | |
| TTGAATAGATTCTCATTGGT+TGG | + | chr3_1:72016236-72016255 | None:intergenic | 30.0% | |
| AGACTTGAATAGATTCTCAT+TGG | + | chr3_1:72016240-72016259 | None:intergenic | 30.0% | |
| AGTCATGATAATTAGCTCCT+TGG | - | chr3_1:72015441-72015460 | Msa0373050:three_prime_UTR | 35.0% | |
| ACCAAGACTTTGATCTAACT+TGG | - | chr3_1:72015488-72015507 | Msa0373050:exon | 35.0% | |
| CCAAGACTTTGATCTAACTT+GGG | - | chr3_1:72015489-72015508 | Msa0373050:exon | 35.0% | |
| CAAGACTTTGATCTAACTTG+GGG | - | chr3_1:72015490-72015509 | Msa0373050:exon | 35.0% | |
| CACCATTGAATATCTTAGCA+CGG | + | chr3_1:72015522-72015541 | None:intergenic | 35.0% | |
| TCTTTCTCTAGACAAAACCT+CGG | - | chr3_1:72015555-72015574 | Msa0373050:CDS | 35.0% | |
| ! | CATACAAACGTGTTTTCTCA+AGG | - | chr3_1:72015958-72015977 | Msa0373050:intron | 35.0% |
| GAGAACAACAATTCTACCTT+TGG | - | chr3_1:72015992-72016011 | Msa0373050:CDS | 35.0% | |
| GCATTCTTGAAGATCCTTAT+AGG | + | chr3_1:72016183-72016202 | None:intergenic | 35.0% | |
| ! | TTCTCATTGGTTGGTTCTTT+GGG | + | chr3_1:72016227-72016246 | None:intergenic | 35.0% |
| ! | ATTCTCATTGGTTGGTTCTT+TGG | + | chr3_1:72016228-72016247 | None:intergenic | 35.0% |
| TGAGAATCTATTCAAGTCTC+TGG | - | chr3_1:72016241-72016260 | Msa0373050:intron | 35.0% | |
| GGAAGAGATAGATGATAACT+CGG | + | chr3_1:72016358-72016377 | None:intergenic | 35.0% | |
| AGCAATGAACTTGATGCTTA+TGG | - | chr3_1:72016405-72016424 | Msa0373050:CDS | 35.0% | |
| ATGGTAGAAGAAGATTGAGA+TGG | - | chr3_1:72016424-72016443 | Msa0373050:CDS | 35.0% | |
| TGGTAGAAGAAGATTGAGAT+GGG | - | chr3_1:72016425-72016444 | Msa0373050:CDS | 35.0% | |
| AACGAAAACTGATATGGAAG+TGG | + | chr3_1:72016697-72016716 | None:intergenic | 35.0% | |
| AGTCTCAATAGATACGAACA+GGG | + | chr3_1:72016741-72016760 | None:intergenic | 35.0% | |
| TAGTCTCAATAGATACGAAC+AGG | + | chr3_1:72016742-72016761 | None:intergenic | 35.0% | |
| AGTCATGATAATTAGCTCCT+TGG | - | chr3_1:72015441-72015460 | Msa0373050:three_prime_UTR | 35.0% | |
| ACCAAGACTTTGATCTAACT+TGG | - | chr3_1:72015488-72015507 | Msa0373050:exon | 35.0% | |
| CCAAGACTTTGATCTAACTT+GGG | - | chr3_1:72015489-72015508 | Msa0373050:exon | 35.0% | |
| CAAGACTTTGATCTAACTTG+GGG | - | chr3_1:72015490-72015509 | Msa0373050:exon | 35.0% | |
| CACCATTGAATATCTTAGCA+CGG | + | chr3_1:72015522-72015541 | None:intergenic | 35.0% | |
| TCTTTCTCTAGACAAAACCT+CGG | - | chr3_1:72015555-72015574 | Msa0373050:CDS | 35.0% | |
| ! | CATACAAACGTGTTTTCTCA+AGG | - | chr3_1:72015958-72015977 | Msa0373050:intron | 35.0% |
| GAGAACAACAATTCTACCTT+TGG | - | chr3_1:72015992-72016011 | Msa0373050:CDS | 35.0% | |
| GCATTCTTGAAGATCCTTAT+AGG | + | chr3_1:72016183-72016202 | None:intergenic | 35.0% | |
| ! | TTCTCATTGGTTGGTTCTTT+GGG | + | chr3_1:72016227-72016246 | None:intergenic | 35.0% |
| ! | ATTCTCATTGGTTGGTTCTT+TGG | + | chr3_1:72016228-72016247 | None:intergenic | 35.0% |
| TGAGAATCTATTCAAGTCTC+TGG | - | chr3_1:72016241-72016260 | Msa0373050:intron | 35.0% | |
| GGAAGAGATAGATGATAACT+CGG | + | chr3_1:72016358-72016377 | None:intergenic | 35.0% | |
| AGCAATGAACTTGATGCTTA+TGG | - | chr3_1:72016405-72016424 | Msa0373050:CDS | 35.0% | |
| ATGGTAGAAGAAGATTGAGA+TGG | - | chr3_1:72016424-72016443 | Msa0373050:CDS | 35.0% | |
| TGGTAGAAGAAGATTGAGAT+GGG | - | chr3_1:72016425-72016444 | Msa0373050:CDS | 35.0% | |
| AACGAAAACTGATATGGAAG+TGG | + | chr3_1:72016697-72016716 | None:intergenic | 35.0% | |
| AGTCTCAATAGATACGAACA+GGG | + | chr3_1:72016741-72016760 | None:intergenic | 35.0% | |
| TAGTCTCAATAGATACGAAC+AGG | + | chr3_1:72016742-72016761 | None:intergenic | 35.0% | |
| GGCATGAACAATATGCTGAT+TGG | - | chr3_1:72015418-72015437 | Msa0373050:three_prime_UTR | 40.0% | |
| CCCAAGTTAGATCAAAGTCT+TGG | + | chr3_1:72015492-72015511 | None:intergenic | 40.0% | |
| CATTGAATATCTTAGCACGG+TGG | + | chr3_1:72015519-72015538 | None:intergenic | 40.0% | |
| CACCGTGCTAAGATATTCAA+TGG | - | chr3_1:72015517-72015536 | Msa0373050:CDS | 40.0% | |
| CGTGCTAAGATATTCAATGG+TGG | - | chr3_1:72015520-72015539 | Msa0373050:CDS | 40.0% | |
| CTTTCTCTAGACAAAACCTC+GGG | - | chr3_1:72015556-72015575 | Msa0373050:CDS | 40.0% | |
| !! | ATGCAACTCAAACTTGTTGC+TGG | - | chr3_1:72015625-72015644 | Msa0373050:CDS | 40.0% |
| GAGTTCTTGGGAAATGTTAG+CGG | - | chr3_1:72015919-72015938 | Msa0373050:intron | 40.0% | |
| ! | AACGTGTTTTCTCAAGGCAA+AGG | - | chr3_1:72015964-72015983 | Msa0373050:intron | 40.0% |
| AAGTGTGGAAGTTCTTGGTT+GGG | + | chr3_1:72016023-72016042 | None:intergenic | 40.0% | |
| TAAGTGTGGAAGTTCTTGGT+TGG | + | chr3_1:72016024-72016043 | None:intergenic | 40.0% | |
| AGAGTAAGTGTGGAAGTTCT+TGG | + | chr3_1:72016028-72016047 | None:intergenic | 40.0% | |
| TCCACACTTACTCTATCATC+TGG | - | chr3_1:72016034-72016053 | Msa0373050:CDS | 40.0% | |
| TCCAGATGATAGAGTAAGTG+TGG | + | chr3_1:72016038-72016057 | None:intergenic | 40.0% | |
| ! | ATTGGTTGGTTCTTTGGGAA+TGG | + | chr3_1:72016222-72016241 | None:intergenic | 40.0% |
| !! | GTGGTTTGGTGAAAACTGAT+TGG | - | chr3_1:72016289-72016308 | Msa0373050:intron | 40.0% |
| GTAAGCTGTAAATGGTGCTT+TGG | + | chr3_1:72016316-72016335 | None:intergenic | 40.0% | |
| TTGCGGTAGTAAGCTGTAAA+TGG | + | chr3_1:72016324-72016343 | None:intergenic | 40.0% | |
| !! | ACTCGGTAGCTTTGAAATTG+CGG | + | chr3_1:72016341-72016360 | None:intergenic | 40.0% |
| TTGCAATGCAGAATCAGAGA+AGG | + | chr3_1:72016385-72016404 | None:intergenic | 40.0% | |
| TCATTGATCTCTCAGAACCT+TGG | + | chr3_1:72016531-72016550 | None:intergenic | 40.0% | |
| ACTGATATGGAAGTGGTACA+AGG | + | chr3_1:72016690-72016709 | None:intergenic | 40.0% | |
| GGCATGAACAATATGCTGAT+TGG | - | chr3_1:72015418-72015437 | Msa0373050:three_prime_UTR | 40.0% | |
| CCCAAGTTAGATCAAAGTCT+TGG | + | chr3_1:72015492-72015511 | None:intergenic | 40.0% | |
| CATTGAATATCTTAGCACGG+TGG | + | chr3_1:72015519-72015538 | None:intergenic | 40.0% | |
| CACCGTGCTAAGATATTCAA+TGG | - | chr3_1:72015517-72015536 | Msa0373050:CDS | 40.0% | |
| CGTGCTAAGATATTCAATGG+TGG | - | chr3_1:72015520-72015539 | Msa0373050:CDS | 40.0% | |
| CTTTCTCTAGACAAAACCTC+GGG | - | chr3_1:72015556-72015575 | Msa0373050:CDS | 40.0% | |
| !! | ATGCAACTCAAACTTGTTGC+TGG | - | chr3_1:72015625-72015644 | Msa0373050:CDS | 40.0% |
| GAGTTCTTGGGAAATGTTAG+CGG | - | chr3_1:72015919-72015938 | Msa0373050:intron | 40.0% | |
| ! | AACGTGTTTTCTCAAGGCAA+AGG | - | chr3_1:72015964-72015983 | Msa0373050:intron | 40.0% |
| AAGTGTGGAAGTTCTTGGTT+GGG | + | chr3_1:72016023-72016042 | None:intergenic | 40.0% | |
| TAAGTGTGGAAGTTCTTGGT+TGG | + | chr3_1:72016024-72016043 | None:intergenic | 40.0% | |
| AGAGTAAGTGTGGAAGTTCT+TGG | + | chr3_1:72016028-72016047 | None:intergenic | 40.0% | |
| TCCACACTTACTCTATCATC+TGG | - | chr3_1:72016034-72016053 | Msa0373050:CDS | 40.0% | |
| TCCAGATGATAGAGTAAGTG+TGG | + | chr3_1:72016038-72016057 | None:intergenic | 40.0% | |
| ! | ATTGGTTGGTTCTTTGGGAA+TGG | + | chr3_1:72016222-72016241 | None:intergenic | 40.0% |
| !! | GTGGTTTGGTGAAAACTGAT+TGG | - | chr3_1:72016289-72016308 | Msa0373050:intron | 40.0% |
| GTAAGCTGTAAATGGTGCTT+TGG | + | chr3_1:72016316-72016335 | None:intergenic | 40.0% | |
| TTGCGGTAGTAAGCTGTAAA+TGG | + | chr3_1:72016324-72016343 | None:intergenic | 40.0% | |
| !! | ACTCGGTAGCTTTGAAATTG+CGG | + | chr3_1:72016341-72016360 | None:intergenic | 40.0% |
| TTGCAATGCAGAATCAGAGA+AGG | + | chr3_1:72016385-72016404 | None:intergenic | 40.0% | |
| TCATTGATCTCTCAGAACCT+TGG | + | chr3_1:72016531-72016550 | None:intergenic | 40.0% | |
| ACTGATATGGAAGTGGTACA+AGG | + | chr3_1:72016690-72016709 | None:intergenic | 40.0% | |
| AGCAGAACATGTAGCTACCA+AGG | + | chr3_1:72015461-72015480 | None:intergenic | 45.0% | |
| CTTGTTGCTGGAAATTCTGC+TGG | - | chr3_1:72015637-72015656 | Msa0373050:CDS | 45.0% | |
| ATGGTGCAGTTGTCATCACA+AGG | - | chr3_1:72015871-72015890 | Msa0373050:intron | 45.0% | |
| TCTTGGTTGGGTCAAACCAA+AGG | + | chr3_1:72016011-72016030 | None:intergenic | 45.0% | |
| !! | TCTCTGGAACGCTGATGATT+GGG | - | chr3_1:72016257-72016276 | Msa0373050:intron | 45.0% |
| TGCAGAATCAGAGAAGGAAG+TGG | + | chr3_1:72016379-72016398 | None:intergenic | 45.0% | |
| GATCTTAAGCGATTCCCAGA+AGG | - | chr3_1:72016483-72016502 | Msa0373050:CDS | 45.0% | |
| ACTCAGCAGGAATACCTTCT+GGG | + | chr3_1:72016500-72016519 | None:intergenic | 45.0% | |
| AGCAGAACATGTAGCTACCA+AGG | + | chr3_1:72015461-72015480 | None:intergenic | 45.0% | |
| CTTGTTGCTGGAAATTCTGC+TGG | - | chr3_1:72015637-72015656 | Msa0373050:CDS | 45.0% | |
| ATGGTGCAGTTGTCATCACA+AGG | - | chr3_1:72015871-72015890 | Msa0373050:intron | 45.0% | |
| TCTTGGTTGGGTCAAACCAA+AGG | + | chr3_1:72016011-72016030 | None:intergenic | 45.0% | |
| !! | TCTCTGGAACGCTGATGATT+GGG | - | chr3_1:72016257-72016276 | Msa0373050:intron | 45.0% |
| TGCAGAATCAGAGAAGGAAG+TGG | + | chr3_1:72016379-72016398 | None:intergenic | 45.0% | |
| GATCTTAAGCGATTCCCAGA+AGG | - | chr3_1:72016483-72016502 | Msa0373050:CDS | 45.0% | |
| ACTCAGCAGGAATACCTTCT+GGG | + | chr3_1:72016500-72016519 | None:intergenic | 45.0% | |
| !! | GTCTCTGGAACGCTGATGAT+TGG | - | chr3_1:72016256-72016275 | Msa0373050:intron | 50.0% |
| GCTGATGATTGGGCTACAAG+AGG | - | chr3_1:72016267-72016286 | Msa0373050:intron | 50.0% | |
| GATGATTGGGCTACAAGAGG+TGG | - | chr3_1:72016270-72016289 | Msa0373050:intron | 50.0% | |
| TTGGGCTACAAGAGGTGGTT+TGG | - | chr3_1:72016275-72016294 | Msa0373050:intron | 50.0% | |
| CACTCAGCAGGAATACCTTC+TGG | + | chr3_1:72016501-72016520 | None:intergenic | 50.0% | |
| !! | GTCTCTGGAACGCTGATGAT+TGG | - | chr3_1:72016256-72016275 | Msa0373050:intron | 50.0% |
| GCTGATGATTGGGCTACAAG+AGG | - | chr3_1:72016267-72016286 | Msa0373050:intron | 50.0% | |
| GATGATTGGGCTACAAGAGG+TGG | - | chr3_1:72016270-72016289 | Msa0373050:intron | 50.0% | |
| TTGGGCTACAAGAGGTGGTT+TGG | - | chr3_1:72016275-72016294 | Msa0373050:intron | 50.0% | |
| CACTCAGCAGGAATACCTTC+TGG | + | chr3_1:72016501-72016520 | None:intergenic | 50.0% | |
| CTAGACAAAACCTCGGGCTC+TGG | - | chr3_1:72015562-72015581 | Msa0373050:CDS | 55.0% | |
| CTAGACAAAACCTCGGGCTC+TGG | - | chr3_1:72015562-72015581 | Msa0373050:CDS | 55.0% | |
| CTTGGACGCTTGCACTCAGC+AGG | + | chr3_1:72016513-72016532 | None:intergenic | 60.0% | |
| CTGCTGAGTGCAAGCGTCCA+AGG | - | chr3_1:72016511-72016530 | Msa0373050:CDS | 60.0% | |
| CTTGGACGCTTGCACTCAGC+AGG | + | chr3_1:72016513-72016532 | None:intergenic | 60.0% | |
| CTGCTGAGTGCAAGCGTCCA+AGG | - | chr3_1:72016511-72016530 | Msa0373050:CDS | 60.0% | |
| CGATTGGAAGCCAGAGCCCG+AGG | + | chr3_1:72015575-72015594 | None:intergenic | 65.0% | |
| CGATTGGAAGCCAGAGCCCG+AGG | + | chr3_1:72015575-72015594 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 72015278 | 72016766 | 72015278 | ID=Msa0373050;Name=Msa0373050 |
| chr3_1 | mRNA | 72015278 | 72016766 | 72015278 | ID=Msa0373050-mRNA-1;Parent=Msa0373050;Name=Msa0373050-mRNA-1;_AED=0.27;_eAED=0.27;_QI=125|1|1|1|1|1|3|227|282 |
| chr3_1 | exon | 72015278 | 72015883 | 72015278 | ID=Msa0373050-mRNA-1:exon:15964;Parent=Msa0373050-mRNA-1 |
| chr3_1 | exon | 72015971 | 72016164 | 72015971 | ID=Msa0373050-mRNA-1:exon:15963;Parent=Msa0373050-mRNA-1 |
| chr3_1 | exon | 72016366 | 72016766 | 72016366 | ID=Msa0373050-mRNA-1:exon:15962;Parent=Msa0373050-mRNA-1 |
| chr3_1 | five_prime_UTR | 72016642 | 72016766 | 72016642 | ID=Msa0373050-mRNA-1:five_prime_utr;Parent=Msa0373050-mRNA-1 |
| chr3_1 | CDS | 72016366 | 72016641 | 72016366 | ID=Msa0373050-mRNA-1:cds;Parent=Msa0373050-mRNA-1 |
| chr3_1 | CDS | 72015971 | 72016164 | 72015971 | ID=Msa0373050-mRNA-1:cds;Parent=Msa0373050-mRNA-1 |
| chr3_1 | CDS | 72015505 | 72015883 | 72015505 | ID=Msa0373050-mRNA-1:cds;Parent=Msa0373050-mRNA-1 |
| chr3_1 | three_prime_UTR | 72015278 | 72015504 | 72015278 | ID=Msa0373050-mRNA-1:three_prime_utr;Parent=Msa0373050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
