AlfalfaGEDB | Msa0373050

M. sativa cultivar zhongmu-4 / Msa0373050

KEGG: K08235
GO: -
PFAM: PF00722.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0373050	XP_003601714.1	98.582	282	4	0	1	282	1	282	0.0	583

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0373050	sp\|P35694\|XTH2_SOYBN	83.099	284	42	2	1	279	1	283	1.18e-176	491

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0373050	G7JAU8	98.582	282	4	0	1	282	1	282	0.0	583

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0046970	Msa0373050	0.829682	4.491216e-55	-8.615850e-47
Msa0198210	Msa0373050	0.838493	2.784009e-57	-8.615850e-47
Msa0207680	Msa0373050	0.836458	9.249204e-57	-8.615850e-47
Msa0207690	Msa0373050	0.810170	1.316456e-50	-8.615850e-47
Msa0209360	Msa0373050	0.825661	4.151515e-54	-8.615850e-47
Msa0242820	Msa0373050	0.830704	2.527809e-55	-8.615850e-47
Msa0287640	Msa0373050	0.827166	1.818140e-54	-8.615850e-47
Msa0287660	Msa0373050	0.837866	4.036611e-57	-8.615850e-47
Msa0371510	Msa0373050	0.848833	4.762700e-60	-8.615850e-47
Msa0373050	Msa0373060	0.968603	6.515162e-129	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0373050	MtrunA17_Chr3g0122031	98.582	282	4	0	1	282	1	282	0.0	583
Msa0373050	MtrunA17_Chr3g0122021	98.227	282	5	0	1	282	1	282	0.0	580
Msa0373050	MtrunA17_Chr8g0377841	86.245	269	35	2	10	277	14	281	5.66e-178	491
Msa0373050	MtrunA17_Chr8g0389641	80.851	282	17	2	1	281	1	246	1.13e-166	461
Msa0373050	MtrunA17_Chr4g0072611	72.426	272	67	2	14	278	11	281	6.47e-144	405
Msa0373050	MtrunA17_Chr7g0258911	72.593	270	68	1	14	277	10	279	7.08e-142	400
Msa0373050	MtrunA17_Chr4g0072671	72.285	267	64	1	21	277	19	285	1.53e-139	394
Msa0373050	MtrunA17_Chr4g0072601	63.958	283	96	1	1	277	1	283	3.72e-133	378
Msa0373050	MtrunA17_Chr2g0299061	65.468	278	85	1	11	277	9	286	1.86e-132	377
Msa0373050	MtrunA17_Chr4g0071341	67.681	263	78	1	22	277	19	281	4.16e-131	373

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0373050	AT3G23730.1	72.028	286	69	2	7	281	5	290	2.40e-164	457
Msa0373050	AT4G14130.1	73.264	288	70	2	1	281	1	288	2.90e-163	455
Msa0373050	AT4G25810.1	65.455	275	87	1	11	277	9	283	1.45e-133	379
Msa0373050	AT4G30270.1	64.885	262	84	1	16	277	12	265	2.24e-129	368
Msa0373050	AT5G57550.1	65.370	257	86	1	25	278	27	283	5.09e-129	368
Msa0373050	AT5G57560.1	62.455	277	91	2	10	277	9	281	6.27e-129	368
Msa0373050	AT5G57530.1	63.258	264	81	2	25	277	24	282	6.45e-124	355
Msa0373050	AT5G57540.1	62.500	264	83	3	25	277	23	281	2.93e-122	351
Msa0373050	AT2G18800.1	57.857	280	99	2	17	277	17	296	6.05e-121	348
Msa0373050	AT4G25820.1	62.782	266	91	2	20	278	22	286	6.52e-120	345

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Find 80 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTATTTCATCATGAGT+TGG	0.536081	3_1:+72016127	None:intergenic
AACGAAAACTGATATGGAAG+TGG	0.564414	3_1:+72015328	None:intergenic
AAGTGTGGAAGTTCTTGGTT+GGG	0.498153	3_1:+72016002	None:intergenic
ACCAAGACTTTGATCTAACT+TGG	0.385781	3_1:-72016534	Msa0373050:CDS
ACGTTTGTATGAAGAATGTA+AGG	0.516073	3_1:+72016076	None:intergenic
ACTCAGCAGGAATACCTTCT+GGG	0.494454	3_1:+72015525	None:intergenic
ACTCGGTAGCTTTGAAATTG+CGG	0.568678	3_1:+72015684	None:intergenic
ACTGATATGGAAGTGGTACA+AGG	0.578583	3_1:+72015335	None:intergenic
AGAACCGTTATAAAATAAGA+TGG	0.549036	3_1:+72015454	None:intergenic
AGACTTGAATAGATTCTCAT+TGG	0.409589	3_1:+72015785	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTATATATATGTGTTAGGGT+GGG	+	chr3_1:72015285-72015304	None:intergenic	30.0%
TCTATATATATGTGTTAGGG+TGG	+	chr3_1:72015286-72015305	None:intergenic	30.0%
GGGTCTATATATATGTGTTA+GGG	+	chr3_1:72015289-72015308	None:intergenic	30.0%
AGGGTCTATATATATGTGTT+AGG	+	chr3_1:72015290-72015309	None:intergenic	30.0%
ATGTAATTGTTGTGAAGTGA+AGG	+	chr3_1:72015333-72015352	None:intergenic	30.0%
CTATATGAGGAAGTAAAGAA+AGG	+	chr3_1:72015703-72015722	None:intergenic	30.0%
AACGGTACTATATGCATATA+TGG	-	chr3_1:72015852-72015871	Msa0373050:CDS	30.0%
ACGTTTGTATGAAGAATGTA+AGG	+	chr3_1:72015949-72015968	None:intergenic	30.0%
CATTCTTGAAGATCCTTATA+GGG	+	chr3_1:72016182-72016201	None:intergenic	30.0%
TTCAAGAATGCTGAATCAAT+TGG	-	chr3_1:72016192-72016211	Msa0373050:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	72015278	72016766	72015278	ID=Msa0373050;Name=Msa0373050
chr3_1	mRNA	72015278	72016766	72015278	ID=Msa0373050-mRNA-1;Parent=Msa0373050;Name=Msa0373050-mRNA-1;_AED=0.27;_eAED=0.27;_QI=125\|1\|1\|1\|1\|1\|3\|227\|282
chr3_1	exon	72015278	72015883	72015278	ID=Msa0373050-mRNA-1:exon:15964;Parent=Msa0373050-mRNA-1
chr3_1	exon	72015971	72016164	72015971	ID=Msa0373050-mRNA-1:exon:15963;Parent=Msa0373050-mRNA-1
chr3_1	exon	72016366	72016766	72016366	ID=Msa0373050-mRNA-1:exon:15962;Parent=Msa0373050-mRNA-1
chr3_1	five_prime_UTR	72016642	72016766	72016642	ID=Msa0373050-mRNA-1:five_prime_utr;Parent=Msa0373050-mRNA-1
chr3_1	CDS	72016366	72016641	72016366	ID=Msa0373050-mRNA-1:cds;Parent=Msa0373050-mRNA-1
chr3_1	CDS	72015971	72016164	72015971	ID=Msa0373050-mRNA-1:cds;Parent=Msa0373050-mRNA-1
chr3_1	CDS	72015505	72015883	72015505	ID=Msa0373050-mRNA-1:cds;Parent=Msa0373050-mRNA-1
chr3_1	three_prime_UTR	72015278	72015504	72015278	ID=Msa0373050-mRNA-1:three_prime_utr;Parent=Msa0373050-mRNA-1

Gene Sequence

>Msa0373050

ATGGCTTCTTCTATTGGCATGAACAATATGCTGATTGGAGTCATGATAATTAGCTCCTTGGTAGCTACATGTTCTGCTAACTTCAACCAAGACTTTGATCTAACTTGGGGTGACCACCGTGCTAAGATATTCAATGGTGGTCAACTTCTATCTCTTTCTCTAGACAAAACCTCGGGCTCTGGCTTCCAATCGAAGAAAGAGTATTTATTTGGTAGAATTGATATGCAACTCAAACTTGTTGCTGGAAATTCTGCTGGAACTGTTACTGCTTATTACTTGTCATCACAAGGACCAACTCATGATGAAATAGATTTTGAGTTCTTGGGAAATGTTAGCGGTGATCCTTACATTCTTCATACAAACGTGTTTTCTCAAGGCAAAGGAAACAGAGAACAACAATTCTACCTTTGGTTTGACCCAACCAAGAACTTCCACACTTACTCTATCATCTGGAAGCCCCAACACATTATATTTTTAGTTGATAACATCCCTATAAGGATCTTCAAGAATGCTGAATCAATTGGTATTCCATTCCCAAAGAACCAACCAATGAGAATCTATTCAAGTCTCTGGAACGCTGATGATTGGGCTACAAGAGGTGGTTTGGTGAAAACTGATTGGTCCAAAGCACCATTTACAGCTTACTACCGCAATTTCAAAGCTACCGAGTTATCATCTATCTCTTCCACTTCCTTCTCTGATTCTGCATTGCAAAGCAATGAACTTGATGCTTATGGTAGAAGAAGATTGAGATGGGTTCAGAAGTACTTTATGATCTATAATTACTGCAACGATCTTAAGCGATTCCCAGAAGGTATTCCTGCTGAGTGCAAGCGTCCAAGGTTCTGA

Protein sequence

>Msa0373050

MASSIGMNNMLIGVMIISSLVATCSANFNQDFDLTWGDHRAKIFNGGQLLSLSLDKTSGSGFQSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGDPYILHTNVFSQGKGNREQQFYLWFDPTKNFHTYSIIWKPQHIIFLVDNIPIRIFKNAESIGIPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKATELSSISSTSFSDSALQSNELDAYGRRRLRWVQKYFMIYNYCNDLKRFPEGIPAECKRPRF*