Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647320 | XP_013456580.1 | 98.895 | 543 | 6 | 0 | 1 | 543 | 1 | 543 | 0.0 | 1118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647320 | sp|P29162|ASOL_TOBAC | 53.137 | 542 | 240 | 6 | 8 | 537 | 6 | 545 | 0.0 | 569 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647320 | A0A072UMJ2 | 98.895 | 543 | 6 | 0 | 1 | 543 | 1 | 543 | 0.0 | 1118 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026700 | Msa0647320 | 0.806209 | 9.194117e-50 | -8.615850e-47 |
| Msa0046970 | Msa0647320 | 0.818745 | 1.669756e-52 | -8.615850e-47 |
| Msa0607120 | Msa0647320 | 0.859105 | 5.205287e-63 | -8.615850e-47 |
| Msa0608820 | Msa0647320 | 0.813161 | 2.944587e-51 | -8.615850e-47 |
| Msa0627580 | Msa0647320 | 0.816912 | 4.330729e-52 | -8.615850e-47 |
| Msa0647320 | Msa0690190 | 0.938596 | 5.180789e-99 | -8.615850e-47 |
| Msa0647320 | Msa0690930 | 0.819637 | 1.046073e-52 | -8.615850e-47 |
| Msa0647320 | Msa0691610 | 0.805605 | 1.231217e-49 | -8.615850e-47 |
| Msa0647320 | Msa0705460 | 0.820204 | 7.761551e-53 | -8.615850e-47 |
| Msa0647320 | Msa0718500 | 0.811332 | 7.381331e-51 | -8.615850e-47 |
| Msa0647320 | Msa0719740 | 0.813067 | 3.087725e-51 | -8.615850e-47 |
| Msa0647320 | Msa0758400 | 0.801960 | 7.034427e-49 | -8.615850e-47 |
| Msa0647320 | Msa0773960 | 0.802394 | 5.729131e-49 | -8.615850e-47 |
| Msa0647320 | Msa0794030 | 0.804656 | 1.945685e-49 | -8.615850e-47 |
| Msa0647320 | Msa0802750 | 0.812471 | 4.169304e-51 | -8.615850e-47 |
| Msa0647320 | Msa0803530 | -0.832694 | 8.166389e-56 | -8.615850e-47 |
| Msa0647320 | Msa0841060 | 0.819607 | 1.062791e-52 | -8.615850e-47 |
| Msa0647320 | Msa0930210 | 0.846355 | 2.287637e-59 | -8.615850e-47 |
| Msa0647320 | Msa0932140 | 0.810445 | 1.148812e-50 | -8.615850e-47 |
| Msa0647320 | Msa0932150 | 0.829089 | 6.254860e-55 | -8.615850e-47 |
| Msa0647320 | Msa1041610 | 0.834424 | 3.020794e-56 | -8.615850e-47 |
| Msa0647320 | Msa1088150 | 0.830395 | 3.007964e-55 | -8.615850e-47 |
| Msa0647320 | Msa1088160 | 0.863094 | 3.181825e-64 | -8.615850e-47 |
| Msa0647320 | Msa1127910 | 0.821944 | 3.083325e-53 | -8.615850e-47 |
| Msa0647320 | Msa1132330 | 0.805556 | 1.260785e-49 | -8.615850e-47 |
| Msa0647320 | Msa1166510 | 0.834437 | 2.998879e-56 | -8.615850e-47 |
| Msa0647320 | Msa1175380 | 0.808132 | 3.599239e-50 | -8.615850e-47 |
| Msa0647320 | Msa1234420 | 0.829520 | 4.916465e-55 | -8.615850e-47 |
| Msa0647320 | Msa1235470 | 0.811157 | 8.055884e-51 | -8.615850e-47 |
| Msa0647320 | Msa1236860 | -0.827991 | 1.152303e-54 | -8.615850e-47 |
| Msa0647320 | Msa1237970 | -0.824112 | 9.629102e-54 | -8.615850e-47 |
| Msa0647320 | Msa1277130 | 0.817996 | 2.467812e-52 | -8.615850e-47 |
| Msa0647320 | Msa1315520 | 0.841780 | 3.861517e-58 | -8.615850e-47 |
| Msa0647320 | Msa1315760 | 0.815909 | 7.259944e-52 | -8.615850e-47 |
| Msa0647320 | Msa1317240 | -0.803553 | 3.300258e-49 | -8.615850e-47 |
| Msa0647320 | Msa1371300 | 0.816304 | 5.924344e-52 | -8.615850e-47 |
| Msa0647320 | Msa1412500 | 0.806580 | 7.676810e-50 | -8.615850e-47 |
| Msa0135330 | Msa0647320 | 0.812507 | 4.094340e-51 | -8.615850e-47 |
| Msa0145200 | Msa0647320 | 0.800659 | 1.298927e-48 | -8.615850e-47 |
| Msa0171060 | Msa0647320 | 0.804083 | 2.560982e-49 | -8.615850e-47 |
| Msa0198210 | Msa0647320 | 0.821693 | 3.526234e-53 | -8.615850e-47 |
| Msa0207680 | Msa0647320 | 0.853052 | 3.083033e-61 | -8.615850e-47 |
| Msa0207690 | Msa0647320 | 0.834203 | 3.433462e-56 | -8.615850e-47 |
| Msa0209360 | Msa0647320 | 0.836239 | 1.051206e-56 | -8.615850e-47 |
| Msa0236940 | Msa0647320 | 0.816841 | 4.491495e-52 | -8.615850e-47 |
| Msa0373050 | Msa0647320 | 0.869494 | 2.969280e-66 | -8.615850e-47 |
| Msa0373060 | Msa0647320 | 0.860049 | 2.707472e-63 | -8.615850e-47 |
| Msa0382860 | Msa0647320 | 0.826891 | 2.114577e-54 | -8.615850e-47 |
| Msa0404060 | Msa0647320 | -0.801026 | 1.093329e-48 | -8.615850e-47 |
| Msa0421580 | Msa0647320 | 0.844387 | 7.803379e-59 | -8.615850e-47 |
| Msa0421590 | Msa0647320 | 0.818473 | 1.924334e-52 | -8.615850e-47 |
| Msa0432940 | Msa0647320 | 0.826214 | 3.067636e-54 | -8.615850e-47 |
| Msa0432970 | Msa0647320 | 0.827540 | 1.478737e-54 | -8.615850e-47 |
| Msa0467590 | Msa0647320 | 0.803021 | 4.252557e-49 | -8.615850e-47 |
| Msa0467600 | Msa0647320 | 0.846185 | 2.545125e-59 | -8.615850e-47 |
| Msa0476960 | Msa0647320 | 0.807444 | 5.039336e-50 | -8.615850e-47 |
| Msa0477030 | Msa0647320 | 0.828838 | 7.197720e-55 | -8.615850e-47 |
| Msa0242820 | Msa0647320 | 0.835526 | 1.593744e-56 | -8.615850e-47 |
| Msa0287640 | Msa0647320 | 0.821203 | 4.575365e-53 | -8.615850e-47 |
| Msa0287660 | Msa0647320 | 0.836215 | 1.066028e-56 | -8.615850e-47 |
| Msa0303920 | Msa0647320 | 0.815035 | 1.136160e-51 | -8.615850e-47 |
| Msa0553090 | Msa0647320 | 0.860850 | 1.549242e-63 | -8.615850e-47 |
| Msa0555280 | Msa0647320 | 0.813928 | 1.996734e-51 | -8.615850e-47 |
| Msa0559660 | Msa0647320 | 0.805454 | 1.324456e-49 | -8.615850e-47 |
| Msa0575380 | Msa0647320 | 0.830138 | 3.475614e-55 | -8.615850e-47 |
| Msa0576180 | Msa0647320 | 0.818756 | 1.659890e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647320 | MtrunA17_Chr4g0038671 | 98.895 | 543 | 6 | 0 | 1 | 543 | 1 | 543 | 0.0 | 1118 |
| Msa0647320 | MtrunA17_Chr3g0143671 | 75.468 | 534 | 130 | 1 | 11 | 543 | 11 | 544 | 0.0 | 855 |
| Msa0647320 | MtrunA17_Chr1g0157341 | 76.111 | 540 | 128 | 1 | 5 | 543 | 4 | 543 | 0.0 | 842 |
| Msa0647320 | MtrunA17_Chr4g0024861 | 72.093 | 516 | 143 | 1 | 25 | 539 | 22 | 537 | 0.0 | 795 |
| Msa0647320 | MtrunA17_Chr2g0322441 | 73.930 | 514 | 133 | 1 | 25 | 537 | 25 | 538 | 0.0 | 786 |
| Msa0647320 | MtrunA17_Chr4g0075071 | 69.358 | 545 | 165 | 2 | 1 | 543 | 1 | 545 | 0.0 | 760 |
| Msa0647320 | MtrunA17_Chr4g0024641 | 70.628 | 446 | 129 | 2 | 92 | 536 | 13 | 457 | 0.0 | 663 |
| Msa0647320 | MtrunA17_Chr4g0024641 | 67.470 | 83 | 27 | 0 | 458 | 540 | 875 | 957 | 6.56e-29 | 122 |
| Msa0647320 | MtrunA17_Chr4g0024641 | 68.182 | 88 | 26 | 2 | 451 | 536 | 804 | 891 | 1.42e-28 | 120 |
| Msa0647320 | MtrunA17_Chr4g0024641 | 69.620 | 79 | 24 | 0 | 458 | 536 | 503 | 581 | 3.83e-28 | 119 |
| Msa0647320 | MtrunA17_Chr4g0024641 | 69.620 | 79 | 24 | 0 | 458 | 536 | 565 | 643 | 3.83e-28 | 119 |
| Msa0647320 | MtrunA17_Chr4g0024641 | 69.620 | 79 | 24 | 0 | 458 | 536 | 627 | 705 | 3.83e-28 | 119 |
| Msa0647320 | MtrunA17_Chr4g0024641 | 69.620 | 79 | 24 | 0 | 458 | 536 | 689 | 767 | 3.83e-28 | 119 |
| Msa0647320 | MtrunA17_Chr4g0024641 | 68.354 | 79 | 25 | 0 | 458 | 536 | 441 | 519 | 3.93e-27 | 116 |
| Msa0647320 | MtrunA17_Chr4g0024641 | 68.354 | 79 | 25 | 0 | 458 | 536 | 751 | 829 | 4.14e-27 | 116 |
| Msa0647320 | MtrunA17_Chr8g0374271 | 60.078 | 516 | 204 | 2 | 25 | 539 | 26 | 540 | 0.0 | 652 |
| Msa0647320 | MtrunA17_Chr5g0402831 | 59.653 | 518 | 206 | 2 | 22 | 539 | 23 | 537 | 0.0 | 629 |
| Msa0647320 | MtrunA17_Chr8g0374261 | 56.538 | 520 | 224 | 2 | 17 | 535 | 16 | 534 | 0.0 | 625 |
| Msa0647320 | MtrunA17_Chr4g0043251 | 55.159 | 533 | 229 | 5 | 10 | 533 | 7 | 538 | 0.0 | 581 |
| Msa0647320 | MtrunA17_Chr4g0043261 | 52.952 | 525 | 241 | 4 | 14 | 533 | 9 | 532 | 0.0 | 555 |
| Msa0647320 | MtrunA17_Chr3g0121151 | 52.222 | 540 | 246 | 6 | 5 | 533 | 39 | 577 | 0.0 | 553 |
| Msa0647320 | MtrunA17_Chr3g0121161 | 51.852 | 540 | 248 | 6 | 5 | 533 | 39 | 577 | 0.0 | 549 |
| Msa0647320 | MtrunA17_Chr3g0121171 | 52.037 | 540 | 247 | 6 | 5 | 533 | 574 | 1112 | 2.49e-177 | 551 |
| Msa0647320 | MtrunA17_Chr3g0121171 | 52.037 | 540 | 247 | 6 | 5 | 533 | 1149 | 1687 | 4.94e-177 | 550 |
| Msa0647320 | MtrunA17_Chr3g0121171 | 53.462 | 520 | 232 | 5 | 23 | 533 | 19 | 537 | 5.89e-176 | 547 |
| Msa0647320 | MtrunA17_Chr3g0121171 | 50.469 | 533 | 243 | 7 | 12 | 533 | 1731 | 2253 | 3.19e-165 | 518 |
| Msa0647320 | MtrunA17_Chr4g0056511 | 49.817 | 546 | 249 | 8 | 13 | 534 | 7 | 551 | 6.38e-173 | 501 |
| Msa0647320 | MtrunA17_Chr3g0079321 | 48.463 | 553 | 254 | 8 | 11 | 533 | 1 | 552 | 1.66e-172 | 500 |
| Msa0647320 | MtrunA17_Chr7g0234061 | 50.190 | 526 | 241 | 8 | 27 | 533 | 26 | 549 | 3.92e-169 | 492 |
| Msa0647320 | MtrunA17_Chr1g0197301 | 47.576 | 330 | 170 | 3 | 207 | 533 | 1 | 330 | 1.88e-96 | 296 |
| Msa0647320 | MtrunA17_Chr4g0075781 | 50.962 | 208 | 58 | 3 | 134 | 338 | 1 | 167 | 9.85e-61 | 197 |
| Msa0647320 | MtrunA17_Chr5g0404361 | 29.668 | 573 | 350 | 16 | 1 | 532 | 51 | 611 | 3.29e-60 | 209 |
| Msa0647320 | MtrunA17_Chr5g0404341 | 29.754 | 568 | 338 | 18 | 10 | 532 | 15 | 566 | 2.69e-59 | 206 |
| Msa0647320 | MtrunA17_Chr4g0005921 | 27.899 | 552 | 364 | 12 | 13 | 532 | 8 | 557 | 5.26e-54 | 191 |
| Msa0647320 | MtrunA17_Chr5g0429511 | 27.419 | 558 | 362 | 14 | 10 | 532 | 9 | 558 | 4.78e-52 | 186 |
| Msa0647320 | MtrunA17_Chr5g0436461 | 27.617 | 554 | 351 | 15 | 21 | 532 | 9 | 554 | 5.25e-52 | 186 |
| Msa0647320 | MtrunA17_Chr3g0104061 | 27.664 | 535 | 351 | 12 | 30 | 532 | 26 | 556 | 3.61e-51 | 184 |
| Msa0647320 | MtrunA17_Chr3g0118321 | 26.916 | 535 | 317 | 18 | 53 | 533 | 49 | 563 | 2.27e-47 | 173 |
| Msa0647320 | MtrunA17_Chr5g0431581 | 28.471 | 569 | 345 | 21 | 10 | 532 | 8 | 560 | 8.65e-44 | 163 |
| Msa0647320 | MtrunA17_Chr8g0382691 | 26.362 | 569 | 338 | 18 | 25 | 537 | 29 | 572 | 9.56e-44 | 163 |
| Msa0647320 | MtrunA17_Chr1g0197311 | 39.485 | 233 | 100 | 5 | 19 | 211 | 12 | 243 | 3.72e-43 | 154 |
| Msa0647320 | MtrunA17_Chr3g0118331 | 25.766 | 555 | 344 | 15 | 30 | 533 | 25 | 562 | 7.58e-43 | 161 |
| Msa0647320 | MtrunA17_Chr8g0346581 | 25.094 | 530 | 354 | 12 | 30 | 520 | 34 | 559 | 2.01e-40 | 154 |
| Msa0647320 | MtrunA17_Chr7g0237491 | 27.644 | 539 | 327 | 20 | 7 | 492 | 12 | 540 | 2.21e-40 | 154 |
| Msa0647320 | MtrunA17_Chr7g0237441 | 25.235 | 531 | 344 | 16 | 10 | 492 | 15 | 540 | 5.53e-40 | 153 |
| Msa0647320 | MtrunA17_Chr3g0114211 | 26.110 | 563 | 370 | 17 | 10 | 532 | 14 | 570 | 1.12e-39 | 152 |
| Msa0647320 | MtrunA17_Chr7g0238351 | 27.307 | 531 | 334 | 17 | 10 | 492 | 15 | 541 | 6.20e-38 | 147 |
| Msa0647320 | MtrunA17_Chr7g0240991 | 27.444 | 532 | 331 | 21 | 9 | 492 | 7 | 531 | 3.35e-35 | 139 |
| Msa0647320 | MtrunA17_Chr2g0278811 | 24.365 | 591 | 370 | 15 | 14 | 532 | 22 | 607 | 3.98e-35 | 139 |
| Msa0647320 | MtrunA17_Chr7g0238941 | 24.691 | 567 | 376 | 17 | 13 | 532 | 16 | 578 | 4.89e-35 | 139 |
| Msa0647320 | MtrunA17_Chr5g0437681 | 24.645 | 564 | 374 | 16 | 16 | 532 | 8 | 567 | 7.85e-35 | 138 |
| Msa0647320 | MtrunA17_Chr7g0238981 | 26.367 | 512 | 323 | 17 | 30 | 492 | 47 | 553 | 3.24e-34 | 136 |
| Msa0647320 | MtrunA17_Chr4g0031901 | 24.951 | 509 | 341 | 15 | 30 | 498 | 44 | 551 | 4.88e-33 | 133 |
| Msa0647320 | MtrunA17_Chr7g0240971 | 26.173 | 554 | 333 | 17 | 1 | 497 | 1 | 535 | 5.37e-32 | 130 |
| Msa0647320 | MtrunA17_Chr4g0008521 | 25.889 | 506 | 317 | 16 | 44 | 498 | 40 | 538 | 1.05e-30 | 126 |
| Msa0647320 | MtrunA17_Chr4g0024651 | 80.645 | 62 | 12 | 0 | 25 | 86 | 22 | 83 | 7.46e-30 | 112 |
| Msa0647320 | MtrunA17_Chr3g0118351 | 23.167 | 341 | 210 | 9 | 233 | 533 | 6 | 334 | 9.71e-21 | 94.0 |
| Msa0647320 | MtrunA17_Chr3g0133871 | 27.619 | 210 | 144 | 4 | 13 | 215 | 10 | 218 | 3.76e-18 | 83.6 |
| Msa0647320 | MtrunA17_Chr3g0118341 | 31.285 | 179 | 109 | 8 | 8 | 177 | 1 | 174 | 4.12e-17 | 80.5 |
| Msa0647320 | MtrunA17_Chr3g0133861 | 26.471 | 306 | 176 | 11 | 226 | 492 | 5 | 300 | 1.18e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647320 | AT1G76160.1 | 75.376 | 532 | 131 | 0 | 12 | 543 | 10 | 541 | 0.0 | 860 |
| Msa0647320 | AT1G41830.1 | 73.921 | 533 | 138 | 1 | 12 | 543 | 10 | 542 | 0.0 | 844 |
| Msa0647320 | AT4G38420.1 | 71.695 | 537 | 145 | 3 | 13 | 542 | 13 | 549 | 0.0 | 795 |
| Msa0647320 | AT1G21850.1 | 69.444 | 540 | 161 | 2 | 1 | 540 | 3 | 538 | 0.0 | 788 |
| Msa0647320 | AT1G21860.1 | 68.785 | 535 | 163 | 2 | 1 | 535 | 3 | 533 | 0.0 | 782 |
| Msa0647320 | AT4G22010.1 | 70.746 | 523 | 151 | 2 | 23 | 543 | 19 | 541 | 0.0 | 776 |
| Msa0647320 | AT4G28090.1 | 64.474 | 532 | 180 | 6 | 13 | 538 | 12 | 540 | 0.0 | 711 |
| Msa0647320 | AT4G38420.3 | 71.429 | 469 | 127 | 3 | 13 | 474 | 13 | 481 | 0.0 | 682 |
| Msa0647320 | AT5G66920.1 | 58.687 | 518 | 213 | 1 | 22 | 539 | 29 | 545 | 0.0 | 645 |
| Msa0647320 | AT4G38420.2 | 71.719 | 442 | 118 | 3 | 13 | 447 | 13 | 454 | 0.0 | 642 |
| Msa0647320 | AT4G37160.1 | 53.761 | 545 | 243 | 3 | 4 | 543 | 1 | 541 | 0.0 | 586 |
| Msa0647320 | AT1G55570.1 | 53.775 | 543 | 235 | 5 | 11 | 538 | 5 | 546 | 0.0 | 584 |
| Msa0647320 | AT3G13400.2 | 54.749 | 537 | 233 | 4 | 10 | 537 | 7 | 542 | 0.0 | 582 |
| Msa0647320 | AT3G13400.1 | 54.749 | 537 | 233 | 4 | 10 | 537 | 7 | 542 | 0.0 | 582 |
| Msa0647320 | AT1G55560.1 | 53.050 | 541 | 244 | 4 | 6 | 537 | 2 | 541 | 0.0 | 572 |
| Msa0647320 | AT2G23630.2 | 54.023 | 522 | 239 | 1 | 15 | 535 | 19 | 540 | 0.0 | 569 |
| Msa0647320 | AT2G23630.1 | 54.023 | 522 | 239 | 1 | 15 | 535 | 14 | 535 | 0.0 | 568 |
| Msa0647320 | AT3G13390.1 | 55.556 | 522 | 221 | 4 | 26 | 537 | 24 | 544 | 0.0 | 567 |
| Msa0647320 | AT5G48450.1 | 49.360 | 547 | 261 | 10 | 1 | 534 | 1 | 544 | 0.0 | 527 |
| Msa0647320 | AT5G48450.2 | 49.360 | 547 | 261 | 10 | 1 | 534 | 1 | 544 | 0.0 | 527 |
| Msa0647320 | AT4G12420.1 | 49.640 | 556 | 256 | 9 | 8 | 542 | 4 | 556 | 9.06e-180 | 519 |
| Msa0647320 | AT4G12420.2 | 49.640 | 556 | 256 | 9 | 8 | 542 | 4 | 556 | 9.06e-180 | 519 |
| Msa0647320 | AT1G75790.1 | 49.444 | 540 | 260 | 5 | 8 | 535 | 6 | 544 | 1.08e-179 | 517 |
| Msa0647320 | AT4G25240.2 | 49.548 | 553 | 254 | 9 | 4 | 533 | 1 | 551 | 1.25e-177 | 513 |
| Msa0647320 | AT4G25240.1 | 49.548 | 553 | 254 | 9 | 4 | 533 | 1 | 551 | 1.25e-177 | 513 |
| Msa0647320 | AT5G51480.1 | 48.346 | 544 | 257 | 9 | 19 | 539 | 17 | 559 | 3.26e-177 | 513 |
| Msa0647320 | AT4G37160.2 | 54.120 | 449 | 201 | 2 | 4 | 447 | 1 | 449 | 4.67e-169 | 486 |
| Msa0647320 | AT2G38080.1 | 28.826 | 562 | 350 | 15 | 10 | 532 | 8 | 558 | 4.84e-59 | 205 |
| Msa0647320 | AT5G58910.2 | 28.174 | 575 | 355 | 15 | 8 | 532 | 1 | 567 | 3.32e-57 | 201 |
| Msa0647320 | AT5G58910.3 | 29.714 | 525 | 318 | 14 | 51 | 532 | 50 | 566 | 1.23e-56 | 199 |
| Msa0647320 | AT5G58910.1 | 29.333 | 525 | 313 | 15 | 51 | 532 | 14 | 523 | 2.25e-52 | 187 |
| Msa0647320 | AT4G39830.1 | 27.069 | 580 | 353 | 18 | 11 | 535 | 16 | 580 | 2.62e-52 | 187 |
| Msa0647320 | AT5G01190.1 | 26.761 | 568 | 361 | 14 | 7 | 532 | 4 | 558 | 9.95e-50 | 180 |
| Msa0647320 | AT5G21105.1 | 26.631 | 567 | 335 | 18 | 25 | 533 | 33 | 576 | 4.48e-49 | 179 |
| Msa0647320 | AT5G03260.1 | 27.128 | 564 | 365 | 15 | 8 | 532 | 1 | 557 | 6.91e-49 | 178 |
| Msa0647320 | AT5G01190.2 | 27.672 | 524 | 326 | 13 | 51 | 532 | 32 | 544 | 1.91e-47 | 174 |
| Msa0647320 | AT5G21105.3 | 27.360 | 519 | 301 | 17 | 30 | 490 | 38 | 538 | 6.67e-47 | 172 |
| Msa0647320 | AT5G21100.1 | 25.859 | 553 | 338 | 16 | 34 | 533 | 28 | 561 | 3.91e-45 | 167 |
| Msa0647320 | AT2G30210.1 | 28.044 | 542 | 322 | 18 | 6 | 492 | 2 | 530 | 7.18e-43 | 161 |
| Msa0647320 | AT5G05390.1 | 26.335 | 562 | 366 | 17 | 13 | 532 | 10 | 565 | 9.82e-41 | 155 |
| Msa0647320 | AT2G46570.1 | 24.675 | 539 | 356 | 15 | 30 | 526 | 32 | 562 | 6.19e-39 | 150 |
| Msa0647320 | AT4G39830.3 | 26.735 | 490 | 291 | 16 | 98 | 534 | 8 | 482 | 3.34e-38 | 147 |
| Msa0647320 | AT5G01040.1 | 27.514 | 527 | 325 | 15 | 10 | 492 | 13 | 526 | 3.36e-38 | 148 |
| Msa0647320 | AT4G39830.2 | 26.735 | 490 | 291 | 16 | 98 | 534 | 10 | 484 | 3.58e-38 | 147 |
| Msa0647320 | AT5G09360.1 | 26.625 | 477 | 311 | 12 | 51 | 492 | 57 | 529 | 4.14e-38 | 148 |
| Msa0647320 | AT5G48100.1 | 26.984 | 504 | 313 | 17 | 51 | 507 | 43 | 538 | 5.67e-38 | 147 |
| Msa0647320 | AT1G18140.1 | 24.955 | 557 | 350 | 18 | 30 | 531 | 29 | 572 | 1.06e-36 | 144 |
| Msa0647320 | AT5G01050.1 | 27.239 | 547 | 329 | 17 | 10 | 505 | 13 | 541 | 4.52e-36 | 142 |
| Msa0647320 | AT2G29130.1 | 26.515 | 528 | 339 | 19 | 10 | 492 | 10 | 533 | 5.38e-36 | 142 |
| Msa0647320 | AT5G07130.1 | 26.132 | 574 | 367 | 18 | 9 | 532 | 3 | 569 | 9.47e-36 | 141 |
| Msa0647320 | AT2G40370.1 | 24.315 | 584 | 383 | 15 | 4 | 532 | 1 | 580 | 1.52e-35 | 140 |
| Msa0647320 | AT3G09220.1 | 26.236 | 526 | 334 | 16 | 11 | 492 | 12 | 527 | 2.49e-35 | 140 |
| Msa0647320 | AT4G39830.4 | 26.122 | 490 | 281 | 16 | 98 | 534 | 10 | 471 | 4.70e-34 | 135 |
| Msa0647320 | AT5G21105.2 | 27.177 | 379 | 225 | 13 | 184 | 533 | 29 | 385 | 7.64e-32 | 127 |
| Msa0647320 | AT2G46570.2 | 24.481 | 482 | 314 | 15 | 87 | 526 | 4 | 477 | 3.84e-30 | 124 |
| Msa0647320 | AT5G60020.1 | 28.028 | 289 | 192 | 6 | 8 | 285 | 3 | 286 | 1.40e-26 | 114 |
| Msa0647320 | AT5G60020.2 | 28.028 | 289 | 192 | 6 | 8 | 285 | 3 | 286 | 1.60e-26 | 114 |
| Msa0647320 | AT3G09220.2 | 25.349 | 430 | 279 | 11 | 103 | 492 | 3 | 430 | 1.01e-25 | 110 |
| Msa0647320 | AT5G60020.3 | 29.675 | 246 | 157 | 6 | 51 | 285 | 14 | 254 | 5.36e-25 | 109 |
| Msa0647320 | AT5G07130.2 | 25.918 | 490 | 306 | 18 | 93 | 532 | 2 | 484 | 1.93e-24 | 107 |
| Msa0647320 | AT5G07130.3 | 25.918 | 490 | 306 | 18 | 93 | 532 | 2 | 484 | 1.93e-24 | 107 |
Find 153 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTGAAGTTTCCAATTATT+TGG | 0.084217 | 4_3:-53307466 | Msa0647320:three_prime_UTR |
| CACAAAGCTGCTGGTGGTTT+TGG | 0.124056 | 4_3:-53309807 | Msa0647320:CDS |
| TCTTACCAAGATGGAGTTTA+TGG | 0.139950 | 4_3:-53309927 | Msa0647320:CDS |
| ACATTGATGGATACTCATTT+TGG | 0.174475 | 4_3:-53308434 | Msa0647320:CDS |
| GTTATTCAAATCCAAATAAT+TGG | 0.182004 | 4_3:+53307455 | None:intergenic |
| CTTCAACTCGTTTCACTAAT+AGG | 0.190901 | 4_3:-53309082 | Msa0647320:CDS |
| TTAGTAACAGAGTAGATTTC+TGG | 0.213058 | 4_3:+53311284 | None:intergenic |
| CAACAACCTAGTTATATATT+AGG | 0.223346 | 4_3:-53307739 | Msa0647320:three_prime_UTR |
| AACTCACAACAACCTCTTTC+AGG | 0.244426 | 4_3:-53309026 | Msa0647320:CDS |
| GATCTACCAGAAGGGGTATC+TGG | 0.247730 | 4_3:+53308549 | None:intergenic |
| GGAATGTGAGGAGTGAATTT+TGG | 0.258017 | 4_3:-53307943 | Msa0647320:CDS |
| TCAAGGCCACATCATGAAAT+TGG | 0.262122 | 4_3:-53309225 | Msa0647320:CDS |
| CCACAAAGAAGAGCATTCTT+TGG | 0.269382 | 4_3:+53307842 | None:intergenic |
| CTTATCAATGGTCAATTTCC+TGG | 0.281749 | 4_3:-53311308 | Msa0647320:CDS |
| CCAAAGAATGCTCTTCTTTG+TGG | 0.292466 | 4_3:-53307842 | Msa0647320:CDS |
| GTGTAATCATTAGCCGGTTC+AGG | 0.299278 | 4_3:+53309741 | None:intergenic |
| TTCAAACTTCATTCTCATAA+TGG | 0.300039 | 4_3:+53307794 | None:intergenic |
| AGAAGAGCATTCTTTGGAAT+TGG | 0.303850 | 4_3:+53307848 | None:intergenic |
| TTCAACTCGTTTCACTAATA+GGG | 0.306828 | 4_3:-53309081 | Msa0647320:CDS |
| TTGTATTGGTTACGACTATT+AGG | 0.313314 | 4_3:+53308169 | None:intergenic |
| ACTCAGATGCTGGATCAATT+AGG | 0.325524 | 4_3:-53307880 | Msa0647320:CDS |
| AGTGGTCGGTCCACCGGGAA+TGG | 0.326129 | 4_3:+53309001 | None:intergenic |
| GTGGTCGGTCCACCGGGAAT+GGG | 0.330034 | 4_3:+53309002 | None:intergenic |
| CTGAGGAAAGTTCTAGATTT+CGG | 0.335594 | 4_3:-53309480 | Msa0647320:CDS |
| TACAACATACACTCAACTTT+AGG | 0.338339 | 4_3:-53309250 | Msa0647320:CDS |
| TGGTATGATCCTTGTGGATT+TGG | 0.339764 | 4_3:+53308741 | None:intergenic |
| CTTCAAGTCAAAGATCAAAT+TGG | 0.340245 | 4_3:-53309861 | Msa0647320:CDS |
| TCCAGTTCCTTTCCCTGAAC+CGG | 0.345645 | 4_3:-53309754 | Msa0647320:CDS |
| GTCATGGACTGCAATTTATA+TGG | 0.346150 | 4_3:-53307987 | Msa0647320:CDS |
| GTCCAGTCAAAGAATCTATA+AGG | 0.347743 | 4_3:+53311474 | None:intergenic |
| CTCAGATGCTGGATCAATTA+GGG | 0.355387 | 4_3:-53307879 | Msa0647320:CDS |
| CCTCTTTCAGGCCCCATTCC+CGG | 0.356165 | 4_3:-53309014 | Msa0647320:CDS |
| AACTTTGGACGATACTTTCA+TGG | 0.356230 | 4_3:+53308460 | None:intergenic |
| CAGCATCTCTTAGGTTGTAT+TGG | 0.360857 | 4_3:+53308155 | None:intergenic |
| GATCCTTGTGGATTTGGCCT+TGG | 0.375319 | 4_3:+53308747 | None:intergenic |
| AGCATCCCAGATACCCCTTC+TGG | 0.390553 | 4_3:-53308555 | Msa0647320:CDS |
| ATGAACATCTATTGAGTCAT+AGG | 0.395960 | 4_3:+53309169 | None:intergenic |
| CTAATATATAACTAGGTTGT+TGG | 0.397045 | 4_3:+53307740 | None:intergenic |
| AACAACCTAGTTATATATTA+GGG | 0.398056 | 4_3:-53307738 | Msa0647320:three_prime_UTR |
| AATGATTACACATTTCTCAT+TGG | 0.404476 | 4_3:-53309729 | Msa0647320:CDS |
| ACACATTTCTCATTGGTGAT+TGG | 0.410219 | 4_3:-53309722 | Msa0647320:CDS |
| CTAGCTGATTACTTCAAGAT+TGG | 0.412868 | 4_3:-53308597 | Msa0647320:CDS |
| CATGATAAAAGAAATGGTTC+TGG | 0.417085 | 4_3:+53311227 | None:intergenic |
| TGTTACCATGATAAAAGAAA+TGG | 0.418474 | 4_3:+53311221 | None:intergenic |
| GCCGGTTCAGGGAAAGGAAC+TGG | 0.423047 | 4_3:+53309753 | None:intergenic |
| ATCCTTATAGATTCTTTGAC+TGG | 0.423381 | 4_3:-53311476 | Msa0647320:CDS |
| GTCCAAAGTTGGCACATTGA+TGG | 0.424178 | 4_3:-53308447 | Msa0647320:CDS |
| ACACTCAACTTTAGGATTCA+AGG | 0.438553 | 4_3:-53309242 | Msa0647320:CDS |
| TTGCAGGGCATTCTTATCAA+TGG | 0.439744 | 4_3:-53311320 | Msa0647320:intron |
| ATCCATCAATGTGCCAACTT+TGG | 0.444509 | 4_3:+53308445 | None:intergenic |
| AAAAGAAAATGGTTTGGAGT+TGG | 0.444878 | 4_3:+53311600 | None:intergenic |
| CTTATCAATGGTCATGCAAA+TGG | 0.445715 | 4_3:-53309429 | Msa0647320:CDS |
| TCCTAGACACAGCATCTCTT+AGG | 0.448380 | 4_3:+53308146 | None:intergenic |
| TGGTTAACATTGTGTGGTGT+AGG | 0.449159 | 4_3:+53307760 | None:intergenic |
| ACAGACGAGTTTGCAAAGAA+TGG | 0.452707 | 4_3:+53307703 | None:intergenic |
| ATGAAATTGGTTGAAGTTGA+GGG | 0.453531 | 4_3:-53309212 | Msa0647320:CDS |
| ACCACATGTCCCATCCCTCC+TGG | 0.460131 | 4_3:-53309903 | Msa0647320:CDS |
| ACCTGATGGATCTAGCTTGT+TGG | 0.463194 | 4_3:+53308961 | None:intergenic |
| CCACAAGGATCATACCACTA+TGG | 0.467837 | 4_3:-53308735 | Msa0647320:CDS |
| TTGAATAACTGTGATGTGTT+CGG | 0.472674 | 4_3:-53307441 | Msa0647320:three_prime_UTR |
| GGGAAAGGAACTGGAATCCT+TGG | 0.474555 | 4_3:+53309762 | None:intergenic |
| ATAAGAACAGCTTGAGGGAG+TGG | 0.475907 | 4_3:+53309447 | None:intergenic |
| ATCTGAGTGGTCGGTCCACC+GGG | 0.477150 | 4_3:+53308996 | None:intergenic |
| ATTTGTGTAATGCTCGTGTT+TGG | 0.478781 | 4_3:+53307508 | None:intergenic |
| AATGGTTTGGAGTTGGACTT+AGG | 0.480152 | 4_3:+53311607 | None:intergenic |
| GCAGAATGGACGGTGGTGTA+TGG | 0.483733 | 4_3:-53308195 | Msa0647320:intron |
| CGTGCTTATCACAGCTGATC+AGG | 0.483851 | 4_3:-53309129 | Msa0647320:CDS |
| ATCTACCAGAAGGGGTATCT+GGG | 0.493408 | 4_3:+53308550 | None:intergenic |
| CCTCAAGCTGTTCTTATCAA+TGG | 0.493597 | 4_3:-53309441 | Msa0647320:CDS |
| CTTCTTTGTGGCAAAGCAGT+GGG | 0.493884 | 4_3:-53307830 | Msa0647320:CDS |
| TCCACTCGGAGTTAAACAAC+AGG | 0.494721 | 4_3:-53311430 | Msa0647320:intron |
| TGGTCGGTCCACCGGGAATG+GGG | 0.495454 | 4_3:+53309003 | None:intergenic |
| CAGACGAGTTTGCAAAGAAT+GGG | 0.496723 | 4_3:+53307704 | None:intergenic |
| TTTGACTGGACTATTACTTA+CGG | 0.497937 | 4_3:-53311462 | Msa0647320:CDS |
| GCTGATTACTTCAAGATTGG+TGG | 0.498079 | 4_3:-53308594 | Msa0647320:CDS |
| AAGTAATCAGCTAGCTTCAA+AGG | 0.502248 | 4_3:+53308606 | None:intergenic |
| AGCTTCAAAGGAGTGTCAGC+TGG | 0.505892 | 4_3:+53308618 | None:intergenic |
| CATGAAATTGGTTGAAGTTG+AGG | 0.506111 | 4_3:-53309213 | Msa0647320:CDS |
| GATCTGAGTGGTCGGTCCAC+CGG | 0.507077 | 4_3:+53308995 | None:intergenic |
| TTATCAATGGTCAATTTCCT+GGG | 0.508751 | 4_3:-53311307 | Msa0647320:CDS |
| TAAATTGCAGTCCATGACTT+AGG | 0.517595 | 4_3:+53307992 | None:intergenic |
| AAGTTCTTCCCAGGAGGGAT+GGG | 0.522984 | 4_3:+53309894 | None:intergenic |
| TGTAATCATTAGCCGGTTCA+GGG | 0.525385 | 4_3:+53309742 | None:intergenic |
| GAAGTTCTTCCCAGGAGGGA+TGG | 0.529815 | 4_3:+53309893 | None:intergenic |
| CTGGAATCCTTGGTCTGCTA+AGG | 0.529909 | 4_3:+53309772 | None:intergenic |
| TCATTAGCCGGTTCAGGGAA+AGG | 0.531927 | 4_3:+53309747 | None:intergenic |
| ATGCGAGTATACTCAGATGC+TGG | 0.534376 | 4_3:-53307890 | Msa0647320:CDS |
| AACAAAGCAAGTAGTTGCAT+TGG | 0.537596 | 4_3:+53311537 | None:intergenic |
| CCGGGAATGGGGCCTGAAAG+AGG | 0.539332 | 4_3:+53309014 | None:intergenic |
| GCAACAATGTAGTAGTCCTT+CGG | 0.540184 | 4_3:+53309104 | None:intergenic |
| AGTTCAGCAGCACAAGTGAA+TGG | 0.541477 | 4_3:-53308678 | Msa0647320:CDS |
| AGGAGAAATTCTTACCAAGA+TGG | 0.542021 | 4_3:-53309936 | Msa0647320:CDS |
| CCCAGGAGGGATGGGACATG+TGG | 0.546425 | 4_3:+53309902 | None:intergenic |
| TATCTGGGATGCTACCAACT+TGG | 0.549445 | 4_3:+53308565 | None:intergenic |
| TGGTTCCATAAACTCCATCT+TGG | 0.552233 | 4_3:+53309922 | None:intergenic |
| GACCGACCACTCAGATCGAT+TGG | 0.555626 | 4_3:-53308989 | Msa0647320:CDS |
| TTATATATTAGGGACTAACT+TGG | 0.558841 | 4_3:-53307728 | Msa0647320:three_prime_UTR |
| AGGACAAATCTTACTGCAAG+TGG | 0.560965 | 4_3:-53308771 | Msa0647320:CDS |
| CATTGATAAGAACAGCTTGA+GGG | 0.561031 | 4_3:+53309442 | None:intergenic |
| GTACACTGATACTTCAGTCA+TGG | 0.561692 | 4_3:-53308523 | Msa0647320:CDS |
| TCCAACAAGCTAGATCCATC+AGG | 0.562193 | 4_3:-53308962 | Msa0647320:intron |
| AGACTTAGAATATCAAATGT+TGG | 0.562643 | 4_3:-53309275 | Msa0647320:CDS |
| GGTTGTTGGTTAACATTGTG+TGG | 0.563960 | 4_3:+53307754 | None:intergenic |
| TACGGTGATATTTATCCACT+CGG | 0.565135 | 4_3:-53311444 | Msa0647320:CDS |
| CTTCAACCAATTTCATGATG+TGG | 0.567105 | 4_3:+53309219 | None:intergenic |
| ATGAAAGTATCGTCCAAAGT+TGG | 0.568460 | 4_3:-53308458 | Msa0647320:CDS |
| CACTAGACAACGTGGGAATG+TGG | 0.569561 | 4_3:-53307964 | Msa0647320:CDS |
| CACAGCTGATCAGGCACCGA+AGG | 0.570170 | 4_3:-53309120 | Msa0647320:CDS |
| ATGTTGAATGAAATAAATAG+AGG | 0.571312 | 4_3:+53311644 | None:intergenic |
| AGAAATGTGTAATCATTAGC+CGG | 0.571326 | 4_3:+53309735 | None:intergenic |
| TTAGTCCCTAATATATAACT+AGG | 0.573736 | 4_3:+53307733 | None:intergenic |
| TACACTGATACTTCAGTCAT+GGG | 0.574862 | 4_3:-53308522 | Msa0647320:CDS |
| ACAGAGTAGATTTCTGGCCC+AGG | 0.577570 | 4_3:+53311290 | None:intergenic |
| ACCTAAGAGATGCTGTGTCT+AGG | 0.579180 | 4_3:-53308147 | Msa0647320:CDS |
| TATATGAATTTCAGAAGCTG+AGG | 0.579611 | 4_3:-53309497 | Msa0647320:intron |
| CCACATGTCCCATCCCTCCT+GGG | 0.583499 | 4_3:-53309902 | Msa0647320:CDS |
| ACCTGTTGTTTAACTCCGAG+TGG | 0.583836 | 4_3:+53311429 | None:intergenic |
| TCTTCTTTGTGGCAAAGCAG+TGG | 0.585149 | 4_3:-53307831 | Msa0647320:CDS |
| ACATCATTCACTGTTGAACA+AGG | 0.586268 | 4_3:-53309405 | Msa0647320:intron |
| GACCAATCGATCTGAGTGGT+CGG | 0.592893 | 4_3:+53308987 | None:intergenic |
| CCATAGTGGTATGATCCTTG+TGG | 0.593975 | 4_3:+53308735 | None:intergenic |
| GTGTATGTGAAGTTCTTCCC+AGG | 0.595251 | 4_3:+53309885 | None:intergenic |
| GCTTTGTGAAAAGCAAGAGA+TGG | 0.595885 | 4_3:+53309822 | None:intergenic |
| GATGGATCTAGCTTGTTGGA+TGG | 0.598390 | 4_3:+53308965 | None:intergenic |
| TGTACATTGATCTACCAGAA+GGG | 0.599518 | 4_3:+53308541 | None:intergenic |
| TAATGTTTATCATACCATAG+TGG | 0.606188 | 4_3:+53308721 | None:intergenic |
| CCATTGATAAGAACAGCTTG+AGG | 0.610225 | 4_3:+53309441 | None:intergenic |
| CTTTCAGGCCCCATTCCCGG+TGG | 0.617594 | 4_3:-53309011 | Msa0647320:CDS |
| AAGGAAAATGTAAAGAGAGG+AGG | 0.617695 | 4_3:+53311681 | None:intergenic |
| ACAGGAATGGTGTTCAACAA+AGG | 0.618737 | 4_3:-53309956 | Msa0647320:intron |
| CATTTCTAATGCAGAATGGA+CGG | 0.620989 | 4_3:-53308205 | Msa0647320:intron |
| TCAAAATCCTTAGCAGACCA+AGG | 0.625712 | 4_3:-53309779 | Msa0647320:CDS |
| AACAAGGAAAATGTAAAGAG+AGG | 0.626517 | 4_3:+53311678 | None:intergenic |
| GTGTACATTGATCTACCAGA+AGG | 0.628287 | 4_3:+53308540 | None:intergenic |
| CTGATCAGCTGTGATAAGCA+CGG | 0.630381 | 4_3:+53309130 | None:intergenic |
| CTCAGGTATATCCTAAGTCA+TGG | 0.631745 | 4_3:-53308003 | Msa0647320:intron |
| AACTTATTATCACAATGTGA+TGG | 0.634389 | 4_3:+53307651 | None:intergenic |
| TGTGTCTAGGAGCACAACAC+AGG | 0.641217 | 4_3:-53308134 | Msa0647320:intron |
| GACTCAATAGATGTTCATGT+CGG | 0.642501 | 4_3:-53309164 | Msa0647320:CDS |
| ATGTGAAGTTCTTCCCAGGA+GGG | 0.649193 | 4_3:+53309889 | None:intergenic |
| GGACCAAGGCCAAATCCACA+AGG | 0.651492 | 4_3:-53308750 | Msa0647320:CDS |
| ACACGATCTCAACGAAGGCG+CGG | 0.656942 | 4_3:+53308490 | None:intergenic |
| ATCTTACTGCAAGTGGACCA+AGG | 0.657746 | 4_3:-53308764 | Msa0647320:CDS |
| GTACATTGATCTACCAGAAG+GGG | 0.678351 | 4_3:+53308542 | None:intergenic |
| TTGGTACAAGATTGATCACA+CGG | 0.678759 | 4_3:-53309703 | Msa0647320:intron |
| CTGAAACACGATCTCAACGA+AGG | 0.684228 | 4_3:+53308485 | None:intergenic |
| AGAGGAAGAGAAACCCAACA+AGG | 0.684746 | 4_3:+53311662 | None:intergenic |
| TATGTGAAGTTCTTCCCAGG+AGG | 0.689525 | 4_3:+53309888 | None:intergenic |
| ACGTGGGAATGTGGAATGTG+AGG | 0.692844 | 4_3:-53307955 | Msa0647320:CDS |
| TTCTAATGCAGAATGGACGG+TGG | 0.708926 | 4_3:-53308202 | Msa0647320:intron |
| GATGGACCAATCGATCTGAG+TGG | 0.735511 | 4_3:+53308983 | None:intergenic |
| TTATATGGCACTAGACAACG+TGG | 0.767735 | 4_3:-53307972 | Msa0647320:CDS |
| TATATGGCACTAGACAACGT+GGG | 0.782207 | 4_3:-53307971 | Msa0647320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTATTTACTTTTTATTTAAT+TGG | - | chr4_3:53308270-53308289 | Msa0647320:intron | 10.0% |
| !!! | AAGTCAATATATTATTTTAT+TGG | - | chr4_3:53308362-53308381 | Msa0647320:intron | 10.0% |
| !!! | AGCTAAAAAATATTTTAAAA+TGG | - | chr4_3:53308593-53308612 | Msa0647320:CDS | 10.0% |
| !!! | GCTAAAAAATATTTTAAAAT+GGG | - | chr4_3:53308594-53308613 | Msa0647320:CDS | 10.0% |
| !!! | ATAAGTAATTTTATTTTTCT+CGG | + | chr4_3:53309476-53309495 | None:intergenic | 10.0% |
| !! | ATTAAAAAATTTCAATAACT+TGG | + | chr4_3:53311093-53311112 | None:intergenic | 10.0% |
| !!! | AAGTTTTTATGAATTTCTAA+AGG | + | chr4_3:53308075-53308094 | None:intergenic | 15.0% |
| !!! | AAATACTTGACTTTTATTTT+TGG | + | chr4_3:53308256-53308275 | None:intergenic | 15.0% |
| !!! | TATAAGTTTTGAAGTTTTTA+AGG | - | chr4_3:53308462-53308481 | Msa0647320:CDS | 15.0% |
| !! | CATAATTAATTCTATTCATA+TGG | + | chr4_3:53308682-53308701 | None:intergenic | 15.0% |
| !! | TGTAAAATAATTTAGAAGAA+AGG | + | chr4_3:53308780-53308799 | None:intergenic | 15.0% |
| !! | TGTAGAAAATAAATGTTAAT+TGG | + | chr4_3:53309817-53309836 | None:intergenic | 15.0% |
| !!! | AATTAACATTTATTTTCTAC+AGG | - | chr4_3:53309816-53309835 | Msa0647320:CDS | 15.0% |
| !!! | ATTAACATTTATTTTCTACA+GGG | - | chr4_3:53309817-53309836 | Msa0647320:CDS | 15.0% |
| !! | GATTAATTAAATTTCAATCA+TGG | - | chr4_3:53310896-53310915 | Msa0647320:intron | 15.0% |
| !! | GACAAAAAAATAAAACAATA+GGG | + | chr4_3:53311508-53311527 | None:intergenic | 15.0% |
| !! | TGACAAAAAAATAAAACAAT+AGG | + | chr4_3:53311509-53311528 | None:intergenic | 15.0% |
| !! | ATGTTGAATGAAATAAATAG+AGG | + | chr4_3:53307483-53307502 | None:intergenic | 20.0% |
| !! | AAAAAACAGCAAAAAGAAAA+TGG | + | chr4_3:53307538-53307557 | None:intergenic | 20.0% |
| !! | AAATTTGATTCCTTATACAA+TGG | + | chr4_3:53308050-53308069 | None:intergenic | 20.0% |
| !! | TAAATGTAGAAACTTAATCT+TGG | + | chr4_3:53308505-53308524 | None:intergenic | 20.0% |
| !!! | GATTAATCTTTTTTGTTTGT+CGG | - | chr4_3:53308722-53308741 | Msa0647320:CDS | 20.0% |
| !!! | ATTAATCTTTTTTGTTTGTC+GGG | - | chr4_3:53308723-53308742 | Msa0647320:CDS | 20.0% |
| !! | TGAATTGAATAAAAGGTTTA+AGG | + | chr4_3:53308861-53308880 | None:intergenic | 20.0% |
| !! | ATTAAGCTTATGTTCAATTA+AGG | + | chr4_3:53309080-53309099 | None:intergenic | 20.0% |
| !!! | TTTTCATATTGAAATGAAAC+AGG | - | chr4_3:53309150-53309169 | Msa0647320:CDS | 20.0% |
| !! | TGATTAGACTAGAAATAAAT+CGG | + | chr4_3:53309589-53309608 | None:intergenic | 20.0% |
| !!! | TTTCTTAGTAACTGAATTTT+AGG | - | chr4_3:53309785-53309804 | Msa0647320:CDS | 20.0% |
| !!! | ATTTCCATCAATTTTTTATC+CGG | - | chr4_3:53310746-53310765 | Msa0647320:intron | 20.0% |
| !! | TAATGATATTCAAAGATCAT+AGG | + | chr4_3:53311052-53311071 | None:intergenic | 20.0% |
| !! | AACAACCTAGTTATATATTA+GGG | - | chr4_3:53311386-53311405 | Msa0647320:intron | 20.0% |
| !! | AAAAAAATAAAACAATAGGG+TGG | + | chr4_3:53311505-53311524 | None:intergenic | 20.0% |
| !! | GTTATTCAAATCCAAATAAT+TGG | + | chr4_3:53311672-53311691 | None:intergenic | 20.0% |
| !! | TCTTATAATTTTGCATTTGC+AGG | - | chr4_3:53307788-53307807 | Msa0647320:three_prime_UTR | 25.0% |
| !! | CTTATAATTTTGCATTTGCA+GGG | - | chr4_3:53307789-53307808 | Msa0647320:exon | 25.0% |
| ! | TGTTACCATGATAAAAGAAA+TGG | + | chr4_3:53307906-53307925 | None:intergenic | 25.0% |
| !! | GGAATAATCACACAAAATTT+TGG | - | chr4_3:53308185-53308204 | Msa0647320:CDS | 25.0% |
| ! | CTCATTGTAATTTCATATGT+TGG | + | chr4_3:53308332-53308351 | None:intergenic | 25.0% |
| !!! | AATTATTTTACAACGACGTT+TGG | - | chr4_3:53308788-53308807 | Msa0647320:intron | 25.0% |
| !! | AAAAATGGTTGGTTATGATA+GGG | + | chr4_3:53308886-53308905 | None:intergenic | 25.0% |
| !! | AAAAAATGGTTGGTTATGAT+AGG | + | chr4_3:53308887-53308906 | None:intergenic | 25.0% |
| ! | TTTGTTAGCAAAAAAATGGT+TGG | + | chr4_3:53308897-53308916 | None:intergenic | 25.0% |
| !! | GGTTTTTGTTAGCAAAAAAA+TGG | + | chr4_3:53308901-53308920 | None:intergenic | 25.0% |
| !!! | TTTTTTGCTAACAAAAACCA+TGG | - | chr4_3:53308902-53308921 | Msa0647320:intron | 25.0% |
| !! | TTTTTGCTAACAAAAACCAT+GGG | - | chr4_3:53308903-53308922 | Msa0647320:intron | 25.0% |
| ! | AGAGAGAATAATGCATAAAA+AGG | + | chr4_3:53309020-53309039 | None:intergenic | 25.0% |
| ! | ATATTGAAATGAAACAGGAA+TGG | - | chr4_3:53309155-53309174 | Msa0647320:CDS | 25.0% |
| ! | AATGATTACACATTTCTCAT+TGG | - | chr4_3:53309395-53309414 | Msa0647320:intron | 25.0% |
| ! | AGACTTAGAATATCAAATGT+TGG | - | chr4_3:53309849-53309868 | Msa0647320:CDS | 25.0% |
| ! | TAATGTTTATCATACCATAG+TGG | + | chr4_3:53310406-53310425 | None:intergenic | 25.0% |
| ! | AAATCCGGATAAAAAATTGA+TGG | + | chr4_3:53310753-53310772 | None:intergenic | 25.0% |
| ! | ACATTTAGTATTGTTCACTT+TGG | - | chr4_3:53310874-53310893 | Msa0647320:intron | 25.0% |
| ! | TTCAAACTTCATTCTCATAA+TGG | + | chr4_3:53311333-53311352 | None:intergenic | 25.0% |
| ! | CTAATATATAACTAGGTTGT+TGG | + | chr4_3:53311387-53311406 | None:intergenic | 25.0% |
| ! | CAACAACCTAGTTATATATT+AGG | - | chr4_3:53311385-53311404 | Msa0647320:intron | 25.0% |
| ! | TTAGTCCCTAATATATAACT+AGG | + | chr4_3:53311394-53311413 | None:intergenic | 25.0% |
| ! | TTATATATTAGGGACTAACT+TGG | - | chr4_3:53311396-53311415 | Msa0647320:intron | 25.0% |
| ! | AACTTATTATCACAATGTGA+TGG | + | chr4_3:53311476-53311495 | None:intergenic | 25.0% |
| ! | AACTGAAGTTTCCAATTATT+TGG | - | chr4_3:53311658-53311677 | Msa0647320:five_prime_UTR | 25.0% |
| AACAAGGAAAATGTAAAGAG+AGG | + | chr4_3:53307449-53307468 | None:intergenic | 30.0% | |
| ! | TCTCTTTACATTTTCCTTGT+TGG | - | chr4_3:53307448-53307467 | Msa0647320:three_prime_UTR | 30.0% |
| ! | CTCTTTACATTTTCCTTGTT+GGG | - | chr4_3:53307449-53307468 | Msa0647320:three_prime_UTR | 30.0% |
| ! | AAAAGAAAATGGTTTGGAGT+TGG | + | chr4_3:53307527-53307546 | None:intergenic | 30.0% |
| ACAGCAAAAAGAAAATGGTT+TGG | + | chr4_3:53307533-53307552 | None:intergenic | 30.0% | |
| ! | TTTTTCTCTGCTTAACATGA+AGG | - | chr4_3:53307553-53307572 | Msa0647320:three_prime_UTR | 30.0% |
| ATCCTTATAGATTCTTTGAC+TGG | - | chr4_3:53307648-53307667 | Msa0647320:three_prime_UTR | 30.0% | |
| TTTGACTGGACTATTACTTA+CGG | - | chr4_3:53307662-53307681 | Msa0647320:three_prime_UTR | 30.0% | |
| TTATCAATGGTCAATTTCCT+GGG | - | chr4_3:53307817-53307836 | Msa0647320:CDS | 30.0% | |
| TTAGTAACAGAGTAGATTTC+TGG | + | chr4_3:53307843-53307862 | None:intergenic | 30.0% | |
| CATGATAAAAGAAATGGTTC+TGG | + | chr4_3:53307900-53307919 | None:intergenic | 30.0% | |
| ! | CAGAACCATTTCTTTTATCA+TGG | - | chr4_3:53307898-53307917 | Msa0647320:CDS | 30.0% |
| ! | ATGATAAGTGCCATTGTATA+AGG | - | chr4_3:53308037-53308056 | Msa0647320:intron | 30.0% |
| !!! | CACGGTACTATTTTTTTCTT+TGG | - | chr4_3:53308164-53308183 | Msa0647320:CDS | 30.0% |
| TTTATTATCTTGTGCCCTTA+GGG | - | chr4_3:53308526-53308545 | Msa0647320:CDS | 30.0% | |
| ACAGTTGAGTTATTACTAGA+GGG | - | chr4_3:53308644-53308663 | Msa0647320:CDS | 30.0% | |
| ! | TTTAAGGTGACAGCAAAAAA+GGG | + | chr4_3:53308845-53308864 | None:intergenic | 30.0% |
| TAGGGAGTGAATTGAATAAA+AGG | + | chr4_3:53308868-53308887 | None:intergenic | 30.0% | |
| AAAAAGGCTTTCACTTAGTT+GGG | + | chr4_3:53309004-53309023 | None:intergenic | 30.0% | |
| TAAAAAGGCTTTCACTTAGT+TGG | + | chr4_3:53309005-53309024 | None:intergenic | 30.0% | |
| CTTCAAGTCAAAGATCAAAT+TGG | - | chr4_3:53309263-53309282 | Msa0647320:CDS | 30.0% | |
| AGAAATGTGTAATCATTAGC+CGG | + | chr4_3:53309392-53309411 | None:intergenic | 30.0% | |
| TATATGAATTTCAGAAGCTG+AGG | - | chr4_3:53309627-53309646 | Msa0647320:intron | 30.0% | |
| TACAACATACACTCAACTTT+AGG | - | chr4_3:53309874-53309893 | Msa0647320:CDS | 30.0% | |
| ATGAAATTGGTTGAAGTTGA+GGG | - | chr4_3:53309912-53309931 | Msa0647320:CDS | 30.0% | |
| ATGAACATCTATTGAGTCAT+AGG | + | chr4_3:53309958-53309977 | None:intergenic | 30.0% | |
| TTCAACTCGTTTCACTAATA+GGG | - | chr4_3:53310043-53310062 | Msa0647320:intron | 30.0% | |
| AATTGAACTCAATTACCTGA+TGG | + | chr4_3:53310180-53310199 | None:intergenic | 30.0% | |
| ! | GTTCAATTTTTATACACCGT+CGG | - | chr4_3:53310192-53310211 | Msa0647320:intron | 30.0% |
| ! | ATTAAGTTGTTGCAATTCAC+AGG | - | chr4_3:53310333-53310352 | Msa0647320:intron | 30.0% |
| !! | ACATTGATGGATACTCATTT+TGG | - | chr4_3:53310690-53310709 | Msa0647320:intron | 30.0% |
| !! | CATTGATGGATACTCATTTT+GGG | - | chr4_3:53310691-53310710 | Msa0647320:intron | 30.0% |
| TGTAGCATAGTGATTAAATC+CGG | + | chr4_3:53310768-53310787 | None:intergenic | 30.0% | |
| !! | TTGTATTGGTTACGACTATT+AGG | + | chr4_3:53310958-53310977 | None:intergenic | 30.0% |
| TCATTATACTAGCTAAATGC+AGG | - | chr4_3:53311066-53311085 | Msa0647320:intron | 30.0% | |
| !!! | TTTTTTAATTTGTGTGCCTC+AGG | - | chr4_3:53311104-53311123 | Msa0647320:intron | 30.0% |
| TTGAATAACTGTGATGTGTT+CGG | - | chr4_3:53311683-53311702 | Msa0647320:five_prime_UTR | 30.0% | |
| AAGGAAAATGTAAAGAGAGG+AGG | + | chr4_3:53307446-53307465 | None:intergenic | 35.0% | |
| AACAAAGCAAGTAGTTGCAT+TGG | + | chr4_3:53307590-53307609 | None:intergenic | 35.0% | |
| GTCCAGTCAAAGAATCTATA+AGG | + | chr4_3:53307653-53307672 | None:intergenic | 35.0% | |
| TACGGTGATATTTATCCACT+CGG | - | chr4_3:53307680-53307699 | Msa0647320:three_prime_UTR | 35.0% | |
| CTTATCAATGGTCAATTTCC+TGG | - | chr4_3:53307816-53307835 | Msa0647320:CDS | 35.0% | |
| GATATACCTGAATACACACA+CGG | - | chr4_3:53308146-53308165 | Msa0647320:CDS | 35.0% | |
| !! | GTTTTAATGAGCAAAGAACG+AGG | - | chr4_3:53308292-53308311 | Msa0647320:intron | 35.0% |
| GTTTATTATCTTGTGCCCTT+AGG | - | chr4_3:53308525-53308544 | Msa0647320:CDS | 35.0% | |
| CACAGTTGAGTTATTACTAG+AGG | - | chr4_3:53308643-53308662 | Msa0647320:CDS | 35.0% | |
| TTACAACGACGTTTGGATTA+AGG | - | chr4_3:53308795-53308814 | Msa0647320:intron | 35.0% | |
| TACAACGACGTTTGGATTAA+GGG | - | chr4_3:53308796-53308815 | Msa0647320:intron | 35.0% | |
| ACAGCAAAAAAGGGAATATG+AGG | + | chr4_3:53308836-53308855 | None:intergenic | 35.0% | |
| ! | GTTTAAGGTGACAGCAAAAA+AGG | + | chr4_3:53308846-53308865 | None:intergenic | 35.0% |
| AGTAAAAATCATCACGTGTG+AGG | - | chr4_3:53309048-53309067 | Msa0647320:CDS | 35.0% | |
| AGGAGAAATTCTTACCAAGA+TGG | - | chr4_3:53309188-53309207 | Msa0647320:CDS | 35.0% | |
| TCTTACCAAGATGGAGTTTA+TGG | - | chr4_3:53309197-53309216 | Msa0647320:CDS | 35.0% | |
| ! | ACACATTTCTCATTGGTGAT+TGG | - | chr4_3:53309402-53309421 | Msa0647320:intron | 35.0% |
| TTGGTACAAGATTGATCACA+CGG | - | chr4_3:53309421-53309440 | Msa0647320:CDS | 35.0% | |
| GATGTGAAGATGTTTAGCTA+GGG | + | chr4_3:53309534-53309553 | None:intergenic | 35.0% | |
| AGATGTGAAGATGTTTAGCT+AGG | + | chr4_3:53309535-53309554 | None:intergenic | 35.0% | |
| ! | TCTCCAATTTAGTTCACTCA+TGG | - | chr4_3:53309552-53309571 | Msa0647320:intron | 35.0% |
| AGACCATGAGTGAACTAAAT+TGG | + | chr4_3:53309558-53309577 | None:intergenic | 35.0% | |
| !! | CTGAGGAAAGTTCTAGATTT+CGG | - | chr4_3:53309644-53309663 | Msa0647320:intron | 35.0% |
| CATTGATAAGAACAGCTTGA+GGG | + | chr4_3:53309685-53309704 | None:intergenic | 35.0% | |
| CTTATCAATGGTCATGCAAA+TGG | - | chr4_3:53309695-53309714 | Msa0647320:intron | 35.0% | |
| ACATCATTCACTGTTGAACA+AGG | - | chr4_3:53309719-53309738 | Msa0647320:CDS | 35.0% | |
| !! | ACACTCAACTTTAGGATTCA+AGG | - | chr4_3:53309882-53309901 | Msa0647320:CDS | 35.0% |
| CTTCAACCAATTTCATGATG+TGG | + | chr4_3:53309908-53309927 | None:intergenic | 35.0% | |
| CATGAAATTGGTTGAAGTTG+AGG | - | chr4_3:53309911-53309930 | Msa0647320:CDS | 35.0% | |
| GACTCAATAGATGTTCATGT+CGG | - | chr4_3:53309960-53309979 | Msa0647320:intron | 35.0% | |
| CTTCAACTCGTTTCACTAAT+AGG | - | chr4_3:53310042-53310061 | Msa0647320:intron | 35.0% | |
| GATTGGATTATTTAGACCGA+CGG | + | chr4_3:53310211-53310230 | None:intergenic | 35.0% | |
| ATGAAGAGTCTCTTAGAGAT+TGG | + | chr4_3:53310228-53310247 | None:intergenic | 35.0% | |
| ! | AAGTAATCAGCTAGCTTCAA+AGG | + | chr4_3:53310521-53310540 | None:intergenic | 35.0% |
| CTAGCTGATTACTTCAAGAT+TGG | - | chr4_3:53310527-53310546 | Msa0647320:intron | 35.0% | |
| TGTACATTGATCTACCAGAA+GGG | + | chr4_3:53310586-53310605 | None:intergenic | 35.0% | |
| TACACTGATACTTCAGTCAT+GGG | - | chr4_3:53310602-53310621 | Msa0647320:intron | 35.0% | |
| AACTTTGGACGATACTTTCA+TGG | + | chr4_3:53310667-53310686 | None:intergenic | 35.0% | |
| !! | ATGAAAGTATCGTCCAAAGT+TGG | - | chr4_3:53310666-53310685 | Msa0647320:intron | 35.0% |
| ATGGCATTTCTAATGCAGAA+TGG | - | chr4_3:53310915-53310934 | Msa0647320:intron | 35.0% | |
| CATTTCTAATGCAGAATGGA+CGG | - | chr4_3:53310919-53310938 | Msa0647320:intron | 35.0% | |
| TAAATTGCAGTCCATGACTT+AGG | + | chr4_3:53311135-53311154 | None:intergenic | 35.0% | |
| ! | GTCATGGACTGCAATTTATA+TGG | - | chr4_3:53311137-53311156 | Msa0647320:intron | 35.0% |
| ! | GAATGTGAGGAGTGAATTTT+GGG | - | chr4_3:53311182-53311201 | Msa0647320:intron | 35.0% |
| !! | AGAAGAGCATTCTTTGGAAT+TGG | + | chr4_3:53311279-53311298 | None:intergenic | 35.0% |
| ATTTGTGTAATGCTCGTGTT+TGG | + | chr4_3:53311619-53311638 | None:intergenic | 35.0% | |
| ! | AATGGTTTGGAGTTGGACTT+AGG | + | chr4_3:53307520-53307539 | None:intergenic | 40.0% |
| ! | TTGCAGGGCATTCTTATCAA+TGG | - | chr4_3:53307804-53307823 | Msa0647320:exon | 40.0% |
| ATAGTACCGTGTGTGTATTC+AGG | + | chr4_3:53308155-53308174 | None:intergenic | 40.0% | |
| !! | AAATGTTAACTTGTGCCCTC+AGG | - | chr4_3:53308386-53308405 | Msa0647320:intron | 40.0% |
| !! | AATGTTAACTTGTGCCCTCA+GGG | - | chr4_3:53308387-53308406 | Msa0647320:intron | 40.0% |
| !! | CTTGTTAACTTGTGCCCTAA+GGG | + | chr4_3:53308543-53308562 | None:intergenic | 40.0% |
| !! | TCTTGTTAACTTGTGCCCTA+AGG | + | chr4_3:53308544-53308563 | None:intergenic | 40.0% |
| GGGTGCATTTATTAAACCCA+TGG | + | chr4_3:53308922-53308941 | None:intergenic | 40.0% | |
| GATCCGTGACATGACATTAA+GGG | + | chr4_3:53308962-53308981 | None:intergenic | 40.0% | |
| TGATCCGTGACATGACATTA+AGG | + | chr4_3:53308963-53308982 | None:intergenic | 40.0% | |
| ACAGGAATGGTGTTCAACAA+AGG | - | chr4_3:53309168-53309187 | Msa0647320:CDS | 40.0% | |
| TGGTTCCATAAACTCCATCT+TGG | + | chr4_3:53309205-53309224 | None:intergenic | 40.0% | |
| GCTTTGTGAAAAGCAAGAGA+TGG | + | chr4_3:53309305-53309324 | None:intergenic | 40.0% | |
| ! | TGGTCTGCTAAGGATTTTGA+TGG | + | chr4_3:53309345-53309364 | None:intergenic | 40.0% |
| TCAAAATCCTTAGCAGACCA+AGG | - | chr4_3:53309345-53309364 | Msa0647320:intron | 40.0% | |
| ! | TGTAATCATTAGCCGGTTCA+GGG | + | chr4_3:53309385-53309404 | None:intergenic | 40.0% |
| CCATTGATAAGAACAGCTTG+AGG | + | chr4_3:53309686-53309705 | None:intergenic | 40.0% | |
| CCTCAAGCTGTTCTTATCAA+TGG | - | chr4_3:53309683-53309702 | Msa0647320:intron | 40.0% | |
| TCAAGGCCACATCATGAAAT+TGG | - | chr4_3:53309899-53309918 | Msa0647320:CDS | 40.0% | |
| GCAACAATGTAGTAGTCCTT+CGG | + | chr4_3:53310023-53310042 | None:intergenic | 40.0% | |
| AACTCACAACAACCTCTTTC+AGG | - | chr4_3:53310098-53310117 | Msa0647320:intron | 40.0% | |
| AGGACAAATCTTACTGCAAG+TGG | - | chr4_3:53310353-53310372 | Msa0647320:intron | 40.0% | |
| TGGTATGATCCTTGTGGATT+TGG | + | chr4_3:53310386-53310405 | None:intergenic | 40.0% | |
| GCTGATTACTTCAAGATTGG+TGG | - | chr4_3:53310530-53310549 | Msa0647320:intron | 40.0% | |
| !!! | ATTGGTGGTGTTTTCCAAGT+TGG | - | chr4_3:53310545-53310564 | Msa0647320:intron | 40.0% |
| GTACATTGATCTACCAGAAG+GGG | + | chr4_3:53310585-53310604 | None:intergenic | 40.0% | |
| GTGTACATTGATCTACCAGA+AGG | + | chr4_3:53310587-53310606 | None:intergenic | 40.0% | |
| GTACACTGATACTTCAGTCA+TGG | - | chr4_3:53310601-53310620 | Msa0647320:intron | 40.0% | |
| ATCCATCAATGTGCCAACTT+TGG | + | chr4_3:53310682-53310701 | None:intergenic | 40.0% | |
| !!! | GGATACTCATTTTGGGTTGT+CGG | - | chr4_3:53310698-53310717 | Msa0647320:intron | 40.0% |
| !!! | GATACTCATTTTGGGTTGTC+GGG | - | chr4_3:53310699-53310718 | Msa0647320:intron | 40.0% |
| ! | CAGCATCTCTTAGGTTGTAT+TGG | + | chr4_3:53310972-53310991 | None:intergenic | 40.0% |
| CATGACTTAGGATATACCTG+AGG | + | chr4_3:53311123-53311142 | None:intergenic | 40.0% | |
| CTCAGGTATATCCTAAGTCA+TGG | - | chr4_3:53311121-53311140 | Msa0647320:intron | 40.0% | |
| TTATATGGCACTAGACAACG+TGG | - | chr4_3:53311152-53311171 | Msa0647320:intron | 40.0% | |
| TATATGGCACTAGACAACGT+GGG | - | chr4_3:53311153-53311172 | Msa0647320:intron | 40.0% | |
| ! | GGAATGTGAGGAGTGAATTT+TGG | - | chr4_3:53311181-53311200 | Msa0647320:intron | 40.0% |
| ! | TTTTGGGCACGACAATATCT+TGG | - | chr4_3:53311198-53311217 | Msa0647320:intron | 40.0% |
| ACTCAGATGCTGGATCAATT+AGG | - | chr4_3:53311244-53311263 | Msa0647320:CDS | 40.0% | |
| CTCAGATGCTGGATCAATTA+GGG | - | chr4_3:53311245-53311264 | Msa0647320:CDS | 40.0% | |
| !! | CCACAAAGAAGAGCATTCTT+TGG | + | chr4_3:53311285-53311304 | None:intergenic | 40.0% |
| CCAAAGAATGCTCTTCTTTG+TGG | - | chr4_3:53311282-53311301 | Msa0647320:CDS | 40.0% | |
| TGGTTAACATTGTGTGGTGT+AGG | + | chr4_3:53311367-53311386 | None:intergenic | 40.0% | |
| ! | GGTTGTTGGTTAACATTGTG+TGG | + | chr4_3:53311373-53311392 | None:intergenic | 40.0% |
| CAGACGAGTTTGCAAAGAAT+GGG | + | chr4_3:53311423-53311442 | None:intergenic | 40.0% | |
| ACAGACGAGTTTGCAAAGAA+TGG | + | chr4_3:53311424-53311443 | None:intergenic | 40.0% | |
| AGAGGAAGAGAAACCCAACA+AGG | + | chr4_3:53307465-53307484 | None:intergenic | 45.0% | |
| TCCACTCGGAGTTAAACAAC+AGG | - | chr4_3:53307694-53307713 | Msa0647320:three_prime_UTR | 45.0% | |
| ! | ACCTGTTGTTTAACTCCGAG+TGG | + | chr4_3:53307698-53307717 | None:intergenic | 45.0% |
| ATCCTTATCTTGTGCCCTGA+GGG | + | chr4_3:53308404-53308423 | None:intergenic | 45.0% | |
| GACATTAAGGGCCTAAGTGA+TGG | + | chr4_3:53308950-53308969 | None:intergenic | 45.0% | |
| AGGCCCTTAATGTCATGTCA+CGG | - | chr4_3:53308956-53308975 | Msa0647320:intron | 45.0% | |
| ATGTGAAGTTCTTCCCAGGA+GGG | + | chr4_3:53309238-53309257 | None:intergenic | 45.0% | |
| TATGTGAAGTTCTTCCCAGG+AGG | + | chr4_3:53309239-53309258 | None:intergenic | 45.0% | |
| GTGTATGTGAAGTTCTTCCC+AGG | + | chr4_3:53309242-53309261 | None:intergenic | 45.0% | |
| !! | CTTGCTTTTCACAAAGCTGC+TGG | - | chr4_3:53309308-53309327 | Msa0647320:intron | 45.0% |
| ! | GTGTAATCATTAGCCGGTTC+AGG | + | chr4_3:53309386-53309405 | None:intergenic | 45.0% |
| ATAAGAACAGCTTGAGGGAG+TGG | + | chr4_3:53309680-53309699 | None:intergenic | 45.0% | |
| CTGATCAGCTGTGATAAGCA+CGG | + | chr4_3:53309997-53310016 | None:intergenic | 45.0% | |
| !! | GATGGATCTAGCTTGTTGGA+TGG | + | chr4_3:53310162-53310181 | None:intergenic | 45.0% |
| TCCAACAAGCTAGATCCATC+AGG | - | chr4_3:53310162-53310181 | Msa0647320:intron | 45.0% | |
| ! | ACCTGATGGATCTAGCTTGT+TGG | + | chr4_3:53310166-53310185 | None:intergenic | 45.0% |
| ATCTTACTGCAAGTGGACCA+AGG | - | chr4_3:53310360-53310379 | Msa0647320:intron | 45.0% | |
| CCATAGTGGTATGATCCTTG+TGG | + | chr4_3:53310392-53310411 | None:intergenic | 45.0% | |
| CCACAAGGATCATACCACTA+TGG | - | chr4_3:53310389-53310408 | Msa0647320:intron | 45.0% | |
| AGTTCAGCAGCACAAGTGAA+TGG | - | chr4_3:53310446-53310465 | Msa0647320:intron | 45.0% | |
| ! | TATCTGGGATGCTACCAACT+TGG | + | chr4_3:53310562-53310581 | None:intergenic | 45.0% |
| !! | ATCTACCAGAAGGGGTATCT+GGG | + | chr4_3:53310577-53310596 | None:intergenic | 45.0% |
| CTGAAACACGATCTCAACGA+AGG | + | chr4_3:53310642-53310661 | None:intergenic | 45.0% | |
| GTCCAAAGTTGGCACATTGA+TGG | - | chr4_3:53310677-53310696 | Msa0647320:intron | 45.0% | |
| TTCTAATGCAGAATGGACGG+TGG | - | chr4_3:53310922-53310941 | Msa0647320:intron | 45.0% | |
| ACCTAAGAGATGCTGTGTCT+AGG | - | chr4_3:53310977-53310996 | Msa0647320:intron | 45.0% | |
| TCCTAGACACAGCATCTCTT+AGG | + | chr4_3:53310981-53311000 | None:intergenic | 45.0% | |
| ATGCGAGTATACTCAGATGC+TGG | - | chr4_3:53311234-53311253 | Msa0647320:CDS | 45.0% | |
| TCTTCTTTGTGGCAAAGCAG+TGG | - | chr4_3:53311293-53311312 | Msa0647320:CDS | 45.0% | |
| CTTCTTTGTGGCAAAGCAGT+GGG | - | chr4_3:53311294-53311313 | Msa0647320:CDS | 45.0% | |
| !! | AAAATTAGTAAAATAAAATA+GGG | + | chr4_3:53308567-53308586 | None:intergenic | 5.0% |
| !! | AAAAATTAGTAAAATAAAAT+AGG | + | chr4_3:53308568-53308587 | None:intergenic | 5.0% |
| !! | ACAGAGTAGATTTCTGGCCC+AGG | + | chr4_3:53307837-53307856 | None:intergenic | 50.0% |
| GATCCTTATCTTGTGCCCTG+AGG | + | chr4_3:53308405-53308424 | None:intergenic | 50.0% | |
| AGGGCCTAAGTGATGGTTGA+GGG | + | chr4_3:53308943-53308962 | None:intergenic | 50.0% | |
| AAGGGCCTAAGTGATGGTTG+AGG | + | chr4_3:53308944-53308963 | None:intergenic | 50.0% | |
| ! | AGTTGGGCTTGGAGTTGGTT+GGG | + | chr4_3:53308988-53309007 | None:intergenic | 50.0% |
| ! | TAGTTGGGCTTGGAGTTGGT+TGG | + | chr4_3:53308989-53309008 | None:intergenic | 50.0% |
| CACTTAGTTGGGCTTGGAGT+TGG | + | chr4_3:53308993-53309012 | None:intergenic | 50.0% | |
| GGCTTTCACTTAGTTGGGCT+TGG | + | chr4_3:53308999-53309018 | None:intergenic | 50.0% | |
| AAGTTCTTCCCAGGAGGGAT+GGG | + | chr4_3:53309233-53309252 | None:intergenic | 50.0% | |
| ! | GCTTTTCACAAAGCTGCTGG+TGG | - | chr4_3:53309311-53309330 | Msa0647320:intron | 50.0% |
| ! | CACAAAGCTGCTGGTGGTTT+TGG | - | chr4_3:53309317-53309336 | Msa0647320:intron | 50.0% |
| CTGGAATCCTTGGTCTGCTA+AGG | + | chr4_3:53309355-53309374 | None:intergenic | 50.0% | |
| GGGAAAGGAACTGGAATCCT+TGG | + | chr4_3:53309365-53309384 | None:intergenic | 50.0% | |
| TCCAGTTCCTTTCCCTGAAC+CGG | - | chr4_3:53309370-53309389 | Msa0647320:intron | 50.0% | |
| ! | TCATTAGCCGGTTCAGGGAA+AGG | + | chr4_3:53309380-53309399 | None:intergenic | 50.0% |
| CGTGCTTATCACAGCTGATC+AGG | - | chr4_3:53309995-53310014 | Msa0647320:intron | 50.0% | |
| GACCAATCGATCTGAGTGGT+CGG | + | chr4_3:53310140-53310159 | None:intergenic | 50.0% | |
| GATGGACCAATCGATCTGAG+TGG | + | chr4_3:53310144-53310163 | None:intergenic | 50.0% | |
| GATCCTTGTGGATTTGGCCT+TGG | + | chr4_3:53310380-53310399 | None:intergenic | 50.0% | |
| !! | AGCTTCAAAGGAGTGTCAGC+TGG | + | chr4_3:53310509-53310528 | None:intergenic | 50.0% |
| !! | GATCTACCAGAAGGGGTATC+TGG | + | chr4_3:53310578-53310597 | None:intergenic | 50.0% |
| ! | TGTGTCTAGGAGCACAACAC+AGG | - | chr4_3:53310990-53311009 | Msa0647320:intron | 50.0% |
| CACTAGACAACGTGGGAATG+TGG | - | chr4_3:53311160-53311179 | Msa0647320:intron | 50.0% | |
| ACGTGGGAATGTGGAATGTG+AGG | - | chr4_3:53311169-53311188 | Msa0647320:intron | 50.0% | |
| TGCCCTCAGGGCACAAGATA+AGG | - | chr4_3:53308399-53308418 | Msa0647320:intron | 55.0% | |
| GCACCCCTCAACCATCACTT+AGG | - | chr4_3:53308936-53308955 | Msa0647320:intron | 55.0% | |
| GGGCCTAAGTGATGGTTGAG+GGG | + | chr4_3:53308942-53308961 | None:intergenic | 55.0% | |
| GAAGTTCTTCCCAGGAGGGA+TGG | + | chr4_3:53309234-53309253 | None:intergenic | 55.0% | |
| GACCGACCACTCAGATCGAT+TGG | - | chr4_3:53310135-53310154 | Msa0647320:intron | 55.0% | |
| GGACCAAGGCCAAATCCACA+AGG | - | chr4_3:53310374-53310393 | Msa0647320:intron | 55.0% | |
| AGCATCCCAGATACCCCTTC+TGG | - | chr4_3:53310569-53310588 | Msa0647320:intron | 55.0% | |
| ACACGATCTCAACGAAGGCG+CGG | + | chr4_3:53310637-53310656 | None:intergenic | 55.0% | |
| GCAGAATGGACGGTGGTGTA+TGG | - | chr4_3:53310929-53310948 | Msa0647320:intron | 55.0% | |
| ACCACATGTCCCATCCCTCC+TGG | - | chr4_3:53309221-53309240 | Msa0647320:CDS | 60.0% | |
| CCACATGTCCCATCCCTCCT+GGG | - | chr4_3:53309222-53309241 | Msa0647320:CDS | 60.0% | |
| ! | GCCGGTTCAGGGAAAGGAAC+TGG | + | chr4_3:53309374-53309393 | None:intergenic | 60.0% |
| !! | CACAGCTGATCAGGCACCGA+AGG | - | chr4_3:53310004-53310023 | Msa0647320:intron | 60.0% |
| CCTCTTTCAGGCCCCATTCC+CGG | - | chr4_3:53310110-53310129 | Msa0647320:intron | 60.0% | |
| ATCTGAGTGGTCGGTCCACC+GGG | + | chr4_3:53310131-53310150 | None:intergenic | 60.0% | |
| GATCTGAGTGGTCGGTCCAC+CGG | + | chr4_3:53310132-53310151 | None:intergenic | 60.0% | |
| CCCAGGAGGGATGGGACATG+TGG | + | chr4_3:53309225-53309244 | None:intergenic | 65.0% | |
| CCGGGAATGGGGCCTGAAAG+AGG | + | chr4_3:53310113-53310132 | None:intergenic | 65.0% | |
| CTTTCAGGCCCCATTCCCGG+TGG | - | chr4_3:53310113-53310132 | Msa0647320:intron | 65.0% | |
| TGGTCGGTCCACCGGGAATG+GGG | + | chr4_3:53310124-53310143 | None:intergenic | 65.0% | |
| GTGGTCGGTCCACCGGGAAT+GGG | + | chr4_3:53310125-53310144 | None:intergenic | 65.0% | |
| AGTGGTCGGTCCACCGGGAA+TGG | + | chr4_3:53310126-53310145 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 53307429 | 53311717 | 53307429 | ID=Msa0647320;Name=Msa0647320 |
| chr4_3 | mRNA | 53307429 | 53311717 | 53307429 | ID=Msa0647320-mRNA-1;Parent=Msa0647320;Name=Msa0647320-mRNA-1;_AED=0.10;_eAED=0.10;_QI=140|1|1|1|1|1|8|379|543 |
| chr4_3 | exon | 53307429 | 53308020 | 53307429 | ID=Msa0647320-mRNA-1:exon:13329;Parent=Msa0647320-mRNA-1 |
| chr4_3 | exon | 53308135 | 53308213 | 53308135 | ID=Msa0647320-mRNA-1:exon:13328;Parent=Msa0647320-mRNA-1 |
| chr4_3 | exon | 53308426 | 53308791 | 53308426 | ID=Msa0647320-mRNA-1:exon:13327;Parent=Msa0647320-mRNA-1 |
| chr4_3 | exon | 53308963 | 53309308 | 53308963 | ID=Msa0647320-mRNA-1:exon:13326;Parent=Msa0647320-mRNA-1 |
| chr4_3 | exon | 53309406 | 53309505 | 53309406 | ID=Msa0647320-mRNA-1:exon:13325;Parent=Msa0647320-mRNA-1 |
| chr4_3 | exon | 53309704 | 53309974 | 53309704 | ID=Msa0647320-mRNA-1:exon:13324;Parent=Msa0647320-mRNA-1 |
| chr4_3 | exon | 53311227 | 53311336 | 53311227 | ID=Msa0647320-mRNA-1:exon:13323;Parent=Msa0647320-mRNA-1 |
| chr4_3 | exon | 53311431 | 53311717 | 53311431 | ID=Msa0647320-mRNA-1:exon:13322;Parent=Msa0647320-mRNA-1 |
| chr4_3 | five_prime_UTR | 53311578 | 53311717 | 53311578 | ID=Msa0647320-mRNA-1:five_prime_utr;Parent=Msa0647320-mRNA-1 |
| chr4_3 | CDS | 53311431 | 53311577 | 53311431 | ID=Msa0647320-mRNA-1:cds;Parent=Msa0647320-mRNA-1 |
| chr4_3 | CDS | 53311227 | 53311336 | 53311227 | ID=Msa0647320-mRNA-1:cds;Parent=Msa0647320-mRNA-1 |
| chr4_3 | CDS | 53309704 | 53309974 | 53309704 | ID=Msa0647320-mRNA-1:cds;Parent=Msa0647320-mRNA-1 |
| chr4_3 | CDS | 53309406 | 53309505 | 53309406 | ID=Msa0647320-mRNA-1:cds;Parent=Msa0647320-mRNA-1 |
| chr4_3 | CDS | 53308963 | 53309308 | 53308963 | ID=Msa0647320-mRNA-1:cds;Parent=Msa0647320-mRNA-1 |
| chr4_3 | CDS | 53308426 | 53308791 | 53308426 | ID=Msa0647320-mRNA-1:cds;Parent=Msa0647320-mRNA-1 |
| chr4_3 | CDS | 53308135 | 53308213 | 53308135 | ID=Msa0647320-mRNA-1:cds;Parent=Msa0647320-mRNA-1 |
| chr4_3 | CDS | 53307808 | 53308020 | 53307808 | ID=Msa0647320-mRNA-1:cds;Parent=Msa0647320-mRNA-1 |
| chr4_3 | three_prime_UTR | 53307429 | 53307807 | 53307429 | ID=Msa0647320-mRNA-1:three_prime_utr;Parent=Msa0647320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
