Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421580 | XP_003601714.1 | 98.227 | 282 | 5 | 0 | 1 | 282 | 1 | 282 | 0.0 | 581 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421580 | sp|P35694|XTH2_SOYBN | 82.746 | 284 | 43 | 2 | 1 | 279 | 1 | 283 | 1.02e-175 | 489 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421580 | G7JAU8 | 98.227 | 282 | 5 | 0 | 1 | 282 | 1 | 282 | 0.0 | 581 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046970 | Msa0421580 | 0.813059 | 3.100032e-51 | -8.615850e-47 |
| Msa0207680 | Msa0421580 | 0.843073 | 1.753318e-58 | -8.615850e-47 |
| Msa0207690 | Msa0421580 | 0.818502 | 1.895573e-52 | -8.615850e-47 |
| Msa0209360 | Msa0421580 | 0.846291 | 2.382169e-59 | -8.615850e-47 |
| Msa0371510 | Msa0421580 | 0.829640 | 4.598361e-55 | -8.615850e-47 |
| Msa0373050 | Msa0421580 | 0.933831 | 1.029096e-95 | -8.615850e-47 |
| Msa0373060 | Msa0421580 | 0.975863 | 9.713597e-141 | -8.615850e-47 |
| Msa0419730 | Msa0421580 | 0.805188 | 1.505639e-49 | -8.615850e-47 |
| Msa0419860 | Msa0421580 | 0.817675 | 2.916388e-52 | -8.615850e-47 |
| Msa0421580 | Msa0421590 | 0.882753 | 7.993615e-71 | -8.615850e-47 |
| Msa0421580 | Msa0450030 | 0.821352 | 4.225619e-53 | -8.615850e-47 |
| Msa0421580 | Msa0467590 | 0.885746 | 6.233556e-72 | -8.615850e-47 |
| Msa0421580 | Msa0467600 | 0.969980 | 6.319128e-131 | -8.615850e-47 |
| Msa0421580 | Msa0555280 | 0.818206 | 2.211948e-52 | -8.615850e-47 |
| Msa0421580 | Msa0573650 | 0.849216 | 3.729137e-60 | -8.615850e-47 |
| Msa0421580 | Msa0575380 | 0.821517 | 3.870803e-53 | -8.615850e-47 |
| Msa0421580 | Msa0576180 | 0.817681 | 2.907427e-52 | -8.615850e-47 |
| Msa0421580 | Msa0581370 | 0.818146 | 2.282831e-52 | -8.615850e-47 |
| Msa0421580 | Msa0608820 | 0.803433 | 3.494681e-49 | -8.615850e-47 |
| Msa0421580 | Msa0627580 | 0.844882 | 5.742046e-59 | -8.615850e-47 |
| Msa0421580 | Msa0646190 | -0.807843 | 4.146261e-50 | -8.615850e-47 |
| Msa0421580 | Msa0647320 | 0.844387 | 7.803379e-59 | -8.615850e-47 |
| Msa0421580 | Msa0690190 | 0.827884 | 1.222723e-54 | -8.615850e-47 |
| Msa0421580 | Msa0691610 | 0.801831 | 7.479598e-49 | -8.615850e-47 |
| Msa0421580 | Msa0707490 | 0.874807 | 5.059375e-68 | -8.615850e-47 |
| Msa0421580 | Msa0930210 | 0.842216 | 2.960006e-58 | -8.615850e-47 |
| Msa0421580 | Msa1088150 | 0.910348 | 2.071362e-82 | -8.615850e-47 |
| Msa0421580 | Msa1088160 | 0.977365 | 1.233538e-143 | -8.615850e-47 |
| Msa0421580 | Msa1127910 | 0.800989 | 1.112287e-48 | -8.615850e-47 |
| Msa0421580 | Msa1175380 | 0.820207 | 7.746617e-53 | -8.615850e-47 |
| Msa0421580 | Msa1221290 | 0.805807 | 1.117117e-49 | -8.615850e-47 |
| Msa0421580 | Msa1277350 | 0.810848 | 9.396630e-51 | -8.615850e-47 |
| Msa0421580 | Msa1315760 | 0.822558 | 2.221909e-53 | -8.615850e-47 |
| Msa0421580 | Msa1451000 | 0.883127 | 5.834981e-71 | -8.615850e-47 |
| Msa0242820 | Msa0421580 | 0.858300 | 9.057600e-63 | -8.615850e-47 |
| Msa0256550 | Msa0421580 | 0.812530 | 4.047083e-51 | -8.615850e-47 |
| Msa0287640 | Msa0421580 | 0.844251 | 8.489967e-59 | -8.615850e-47 |
| Msa0287660 | Msa0421580 | 0.861533 | 9.598119e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421580 | MtrunA17_Chr3g0122031 | 98.227 | 282 | 5 | 0 | 1 | 282 | 1 | 282 | 0.0 | 581 |
| Msa0421580 | MtrunA17_Chr3g0122021 | 97.872 | 282 | 6 | 0 | 1 | 282 | 1 | 282 | 0.0 | 578 |
| Msa0421580 | MtrunA17_Chr8g0377841 | 85.874 | 269 | 36 | 2 | 10 | 277 | 14 | 281 | 5.85e-177 | 489 |
| Msa0421580 | MtrunA17_Chr8g0389641 | 80.851 | 282 | 17 | 2 | 1 | 281 | 1 | 246 | 1.16e-166 | 461 |
| Msa0421580 | MtrunA17_Chr4g0072611 | 72.059 | 272 | 68 | 2 | 14 | 278 | 11 | 281 | 5.72e-143 | 403 |
| Msa0421580 | MtrunA17_Chr7g0258911 | 72.222 | 270 | 69 | 1 | 14 | 277 | 10 | 279 | 5.36e-141 | 398 |
| Msa0421580 | MtrunA17_Chr4g0072671 | 71.910 | 267 | 65 | 1 | 21 | 277 | 19 | 285 | 8.94e-139 | 392 |
| Msa0421580 | MtrunA17_Chr4g0072601 | 63.604 | 283 | 97 | 1 | 1 | 277 | 1 | 283 | 3.39e-132 | 376 |
| Msa0421580 | MtrunA17_Chr2g0299061 | 65.108 | 278 | 86 | 1 | 11 | 277 | 9 | 286 | 1.03e-131 | 375 |
| Msa0421580 | MtrunA17_Chr4g0071341 | 67.681 | 263 | 78 | 1 | 22 | 277 | 19 | 281 | 4.79e-131 | 373 |
| Msa0421580 | MtrunA17_Chr4g0072681 | 73.059 | 219 | 48 | 2 | 70 | 277 | 25 | 243 | 1.39e-114 | 330 |
| Msa0421580 | MtrunA17_Chr5g0443391 | 52.465 | 284 | 132 | 2 | 1 | 281 | 1 | 284 | 1.67e-106 | 311 |
| Msa0421580 | MtrunA17_Chr7g0252631 | 52.740 | 292 | 126 | 3 | 1 | 281 | 1 | 291 | 4.67e-106 | 310 |
| Msa0421580 | MtrunA17_Chr7g0252621 | 52.069 | 290 | 127 | 3 | 1 | 279 | 1 | 289 | 2.38e-104 | 305 |
| Msa0421580 | MtrunA17_Chr6g0461731 | 51.712 | 292 | 123 | 4 | 7 | 281 | 24 | 314 | 4.33e-103 | 303 |
| Msa0421580 | MtrunA17_Chr7g0252601 | 50.342 | 292 | 133 | 3 | 1 | 281 | 1 | 291 | 2.04e-102 | 300 |
| Msa0421580 | MtrunA17_Chr6g0461761 | 51.027 | 292 | 131 | 3 | 1 | 281 | 1 | 291 | 2.77e-102 | 300 |
| Msa0421580 | MtrunA17_Chr6g0486581 | 49.291 | 282 | 128 | 3 | 14 | 282 | 9 | 288 | 1.96e-97 | 288 |
| Msa0421580 | MtrunA17_Chr3g0096651 | 51.351 | 259 | 119 | 2 | 26 | 279 | 28 | 284 | 4.90e-96 | 284 |
| Msa0421580 | MtrunA17_Chr4g0023961 | 49.286 | 280 | 122 | 5 | 14 | 277 | 13 | 288 | 2.95e-94 | 280 |
| Msa0421580 | MtrunA17_Chr2g0323161 | 47.797 | 295 | 128 | 7 | 1 | 279 | 4 | 288 | 1.64e-93 | 278 |
| Msa0421580 | MtrunA17_Chr4g0054431 | 48.387 | 279 | 135 | 4 | 6 | 277 | 11 | 287 | 4.31e-93 | 276 |
| Msa0421580 | MtrunA17_Chr1g0206681 | 47.445 | 274 | 134 | 2 | 17 | 282 | 25 | 296 | 5.48e-93 | 276 |
| Msa0421580 | MtrunA17_Chr4g0054451 | 48.000 | 275 | 135 | 3 | 10 | 277 | 16 | 289 | 5.72e-93 | 276 |
| Msa0421580 | MtrunA17_Chr1g0206081 | 44.604 | 278 | 142 | 3 | 11 | 277 | 18 | 294 | 1.94e-83 | 252 |
| Msa0421580 | MtrunA17_Chr8g0390201 | 54.000 | 200 | 82 | 3 | 93 | 282 | 15 | 214 | 4.03e-75 | 228 |
| Msa0421580 | MtrunA17_Chr8g0340001 | 45.763 | 236 | 113 | 4 | 52 | 277 | 1 | 231 | 1.25e-70 | 218 |
| Msa0421580 | MtrunA17_Chr7g0264731 | 41.569 | 255 | 133 | 5 | 25 | 268 | 34 | 283 | 8.17e-63 | 199 |
| Msa0421580 | MtrunA17_Chr2g0327411 | 40.684 | 263 | 137 | 6 | 18 | 268 | 46 | 301 | 6.98e-60 | 192 |
| Msa0421580 | MtrunA17_Chr4g0028221 | 41.603 | 262 | 136 | 6 | 27 | 277 | 49 | 304 | 7.13e-60 | 192 |
| Msa0421580 | MtrunA17_Chr1g0180451 | 39.773 | 264 | 142 | 6 | 25 | 277 | 37 | 294 | 8.79e-59 | 189 |
| Msa0421580 | MtrunA17_Chr2g0303861 | 38.224 | 259 | 143 | 7 | 28 | 278 | 29 | 278 | 5.42e-55 | 179 |
| Msa0421580 | MtrunA17_Chr8g0375981 | 36.782 | 261 | 153 | 5 | 28 | 277 | 31 | 290 | 7.50e-55 | 180 |
| Msa0421580 | MtrunA17_Chr1g0161951 | 37.931 | 261 | 149 | 6 | 28 | 277 | 33 | 291 | 2.64e-52 | 173 |
| Msa0421580 | MtrunA17_Chr5g0410621 | 36.090 | 266 | 152 | 7 | 28 | 277 | 42 | 305 | 3.29e-50 | 169 |
| Msa0421580 | MtrunA17_Chr8g0365231 | 35.338 | 266 | 149 | 8 | 32 | 278 | 50 | 311 | 4.60e-50 | 167 |
| Msa0421580 | MtrunA17_Chr4g0072641 | 63.333 | 120 | 36 | 1 | 158 | 277 | 37 | 148 | 4.54e-49 | 159 |
| Msa0421580 | MtrunA17_Chr7g0235541 | 42.365 | 203 | 101 | 5 | 75 | 265 | 1 | 199 | 1.44e-48 | 160 |
| Msa0421580 | MtrunA17_Chr2g0303721 | 34.524 | 252 | 145 | 6 | 28 | 271 | 30 | 269 | 1.34e-46 | 157 |
| Msa0421580 | MtrunA17_Chr8g0382041 | 34.601 | 263 | 157 | 5 | 28 | 277 | 34 | 294 | 6.95e-44 | 152 |
| Msa0421580 | MtrunA17_Chr4g0072631 | 60.000 | 70 | 27 | 1 | 7 | 75 | 9 | 78 | 1.29e-21 | 87.4 |
| Msa0421580 | MtrunA17_Chr8g0390181 | 46.809 | 94 | 45 | 2 | 5 | 95 | 2 | 93 | 1.49e-18 | 79.0 |
| Msa0421580 | MtrunA17_Chr8g0374231 | 41.176 | 102 | 51 | 3 | 184 | 277 | 1 | 101 | 2.18e-17 | 75.9 |
| Msa0421580 | MtrunA17_Chr8g0350711 | 32.558 | 172 | 108 | 5 | 50 | 219 | 54 | 219 | 4.84e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421580 | AT3G23730.1 | 71.678 | 286 | 70 | 2 | 7 | 281 | 5 | 290 | 1.43e-163 | 456 |
| Msa0421580 | AT4G14130.1 | 72.917 | 288 | 71 | 2 | 1 | 281 | 1 | 288 | 2.11e-162 | 452 |
| Msa0421580 | AT4G25810.1 | 65.091 | 275 | 88 | 1 | 11 | 277 | 9 | 283 | 7.65e-133 | 378 |
| Msa0421580 | AT4G30270.1 | 64.504 | 262 | 85 | 1 | 16 | 277 | 12 | 265 | 2.78e-128 | 365 |
| Msa0421580 | AT5G57560.1 | 62.094 | 277 | 92 | 2 | 10 | 277 | 9 | 281 | 3.31e-128 | 366 |
| Msa0421580 | AT5G57550.1 | 64.981 | 257 | 87 | 1 | 25 | 278 | 27 | 283 | 4.44e-128 | 365 |
| Msa0421580 | AT5G57530.1 | 62.879 | 264 | 82 | 2 | 25 | 277 | 24 | 282 | 4.72e-123 | 353 |
| Msa0421580 | AT5G57540.1 | 62.500 | 264 | 83 | 3 | 25 | 277 | 23 | 281 | 7.75e-122 | 350 |
| Msa0421580 | AT2G18800.1 | 57.857 | 280 | 99 | 2 | 17 | 277 | 17 | 296 | 7.53e-121 | 348 |
| Msa0421580 | AT4G25820.1 | 62.406 | 266 | 92 | 2 | 20 | 278 | 22 | 286 | 5.27e-119 | 343 |
| Msa0421580 | AT5G48070.1 | 57.565 | 271 | 112 | 2 | 10 | 277 | 11 | 281 | 7.64e-117 | 337 |
| Msa0421580 | AT4G30290.1 | 57.934 | 271 | 111 | 2 | 10 | 277 | 6 | 276 | 1.39e-108 | 316 |
| Msa0421580 | AT4G30280.1 | 57.407 | 270 | 112 | 2 | 11 | 277 | 12 | 281 | 2.49e-108 | 315 |
| Msa0421580 | AT1G65310.1 | 59.615 | 260 | 102 | 2 | 21 | 277 | 22 | 281 | 2.58e-107 | 313 |
| Msa0421580 | AT1G65310.2 | 59.615 | 260 | 102 | 2 | 21 | 277 | 44 | 303 | 3.38e-107 | 313 |
| Msa0421580 | AT5G13870.2 | 54.023 | 261 | 112 | 2 | 28 | 281 | 32 | 291 | 8.12e-101 | 296 |
| Msa0421580 | AT5G13870.1 | 54.023 | 261 | 112 | 2 | 28 | 281 | 32 | 291 | 8.12e-101 | 296 |
| Msa0421580 | AT5G13870.3 | 54.023 | 261 | 112 | 2 | 28 | 281 | 32 | 291 | 8.12e-101 | 296 |
| Msa0421580 | AT2G06850.1 | 52.281 | 285 | 122 | 3 | 10 | 281 | 11 | 294 | 2.08e-100 | 296 |
| Msa0421580 | AT4G03210.1 | 48.936 | 282 | 130 | 5 | 10 | 281 | 11 | 288 | 8.88e-96 | 284 |
| Msa0421580 | AT2G14620.1 | 46.181 | 288 | 140 | 2 | 10 | 282 | 12 | 299 | 1.06e-93 | 279 |
| Msa0421580 | AT2G06850.2 | 57.143 | 231 | 91 | 2 | 58 | 281 | 5 | 234 | 2.43e-92 | 273 |
| Msa0421580 | AT4G28850.1 | 47.552 | 286 | 134 | 5 | 10 | 282 | 10 | 292 | 7.88e-92 | 274 |
| Msa0421580 | AT5G65730.1 | 48.561 | 278 | 127 | 6 | 11 | 278 | 20 | 291 | 3.50e-91 | 272 |
| Msa0421580 | AT4G37800.1 | 48.120 | 266 | 126 | 4 | 21 | 277 | 27 | 289 | 1.74e-88 | 265 |
| Msa0421580 | AT4G03210.2 | 52.381 | 231 | 100 | 3 | 60 | 281 | 31 | 260 | 5.16e-86 | 258 |
| Msa0421580 | AT1G11545.1 | 45.357 | 280 | 139 | 4 | 11 | 277 | 21 | 299 | 6.22e-86 | 259 |
| Msa0421580 | AT2G14620.2 | 48.707 | 232 | 111 | 1 | 59 | 282 | 18 | 249 | 2.15e-82 | 248 |
| Msa0421580 | AT2G14620.3 | 49.327 | 223 | 105 | 1 | 68 | 282 | 16 | 238 | 2.62e-80 | 243 |
| Msa0421580 | AT4G13090.1 | 40.893 | 291 | 151 | 4 | 7 | 278 | 1 | 289 | 4.89e-75 | 231 |
| Msa0421580 | AT3G25050.1 | 40.927 | 259 | 140 | 3 | 28 | 277 | 35 | 289 | 3.10e-73 | 226 |
| Msa0421580 | AT4G13080.1 | 45.420 | 262 | 124 | 7 | 28 | 278 | 39 | 292 | 2.72e-72 | 224 |
| Msa0421580 | AT2G36870.1 | 42.857 | 266 | 135 | 6 | 25 | 279 | 40 | 299 | 4.00e-63 | 201 |
| Msa0421580 | AT3G44990.1 | 40.590 | 271 | 142 | 8 | 18 | 277 | 31 | 293 | 1.60e-57 | 186 |
| Msa0421580 | AT1G14720.1 | 34.783 | 299 | 170 | 7 | 7 | 281 | 4 | 301 | 2.61e-53 | 176 |
| Msa0421580 | AT1G10550.1 | 36.029 | 272 | 139 | 8 | 32 | 277 | 47 | 309 | 5.76e-53 | 175 |
| Msa0421580 | AT1G32170.1 | 34.471 | 293 | 163 | 8 | 8 | 277 | 7 | 293 | 1.36e-52 | 175 |
| Msa0421580 | AT2G01850.1 | 31.773 | 299 | 179 | 6 | 7 | 281 | 4 | 301 | 2.78e-50 | 169 |
| Msa0421580 | AT4G18990.1 | 34.601 | 263 | 140 | 7 | 50 | 282 | 62 | 322 | 3.91e-44 | 153 |
| Msa0421580 | AT3G48580.1 | 34.008 | 247 | 145 | 7 | 35 | 277 | 41 | 273 | 3.28e-43 | 149 |
| Msa0421580 | AT4G18990.2 | 33.755 | 237 | 121 | 8 | 77 | 282 | 17 | 248 | 1.01e-36 | 132 |
| Msa0421580 | AT3G48580.3 | 32.143 | 224 | 135 | 6 | 58 | 277 | 4 | 214 | 1.73e-36 | 130 |
| Msa0421580 | AT2G36870.2 | 43.262 | 141 | 70 | 3 | 25 | 157 | 40 | 178 | 2.34e-30 | 112 |
| Msa0421580 | AT3G48580.2 | 30.952 | 252 | 126 | 10 | 35 | 277 | 41 | 253 | 8.10e-28 | 108 |
Find 88 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGAGTGCGTTAGGGAAAT+TGG | 0.193986 | 3_2:-70589253 | None:intergenic |
| ATTCTCATTGGTTGGTTCTT+TGG | 0.220550 | 3_2:-70590563 | None:intergenic |
| TTCTCATTGGTTGGTTCTTT+GGG | 0.221209 | 3_2:-70590562 | None:intergenic |
| TCGAAGAAAGAGTATTTATT+TGG | 0.223648 | 3_2:+70589586 | Msa0421580:CDS |
| GCATTCTTGAAGATCCTTAT+AGG | 0.241455 | 3_2:-70590518 | None:intergenic |
| ATTAATATGGCTTCTTCTAT+TGG | 0.241934 | 3_2:+70589391 | Msa0421580:exon |
| AGAAGCCATATTAATTGATT+TGG | 0.245541 | 3_2:-70589383 | None:intergenic |
| TCTGTCCAAATCAATTAATA+TGG | 0.295797 | 3_2:+70589378 | Msa0421580:exon |
| CACTCTGCAGGAATACCTTC+TGG | 0.325804 | 3_2:-70590836 | None:intergenic |
| ATTTAGTCTCATTAGATAGA+AGG | 0.340861 | 3_2:-70591097 | None:intergenic |
| CATTCTTGAAGATCCTTATA+GGG | 0.350905 | 3_2:-70590517 | None:intergenic |
| TAGTTGATAACATCCCTATA+AGG | 0.361735 | 3_2:+70590504 | Msa0421580:CDS |
| GTCTCTGGAACGCTGATGAT+TGG | 0.365899 | 3_2:+70590594 | Msa0421580:CDS |
| TATTACTTACATAATGTGTT+GGG | 0.366572 | 3_2:-70590399 | None:intergenic |
| ATGCAACTCAAACTCGTTGC+TGG | 0.383246 | 3_2:+70589619 | Msa0421580:CDS |
| GAGAACAACAATTCTACCTT+TGG | 0.383624 | 3_2:+70590330 | Msa0421580:CDS |
| ACCAAGACTTTGATCTAACT+TGG | 0.385781 | 3_2:+70589482 | Msa0421580:CDS |
| TTGTGGTAGTAAGCTGTAAA+TGG | 0.389344 | 3_2:-70590659 | None:intergenic |
| GGTCTATATAATGTGTTAGA+TGG | 0.395391 | 3_2:-70589272 | None:intergenic |
| ATTGGTTGGTTCTTTGGGAA+TGG | 0.395735 | 3_2:-70590557 | None:intergenic |
| TGTGTTAGATGGAGTGCGTT+AGG | 0.403327 | 3_2:-70589261 | None:intergenic |
| TTGGAATGAGAATATGTTAT+GGG | 0.407577 | 3_2:-70589234 | None:intergenic |
| AGACTTGAATAGATTCTCAT+TGG | 0.409589 | 3_2:-70590575 | None:intergenic |
| ATAAATACTCTTTCTTCGAT+TGG | 0.413180 | 3_2:-70589582 | None:intergenic |
| TTCAAGAATGCTGAATCAAT+TGG | 0.430099 | 3_2:+70590530 | Msa0421580:CDS |
| TGAGAATCTATTCAAGTCTC+TGG | 0.437244 | 3_2:+70590579 | Msa0421580:CDS |
| AGAGTAAGTGTGGAAGTTCT+TGG | 0.438651 | 3_2:-70590363 | None:intergenic |
| CTAGACAAAACCTCGGGCTC+TGG | 0.447506 | 3_2:+70589556 | Msa0421580:CDS |
| TCCACACTTACTCTATCATC+TGG | 0.453939 | 3_2:+70590372 | Msa0421580:CDS |
| ATCATAATAAATTAAAATAG+TGG | 0.454459 | 3_2:-70590947 | None:intergenic |
| ATTGGAATGAGAATATGTTA+TGG | 0.455249 | 3_2:-70589235 | None:intergenic |
| ATGTTATGGGAATGTAATGT+AGG | 0.457298 | 3_2:-70589221 | None:intergenic |
| GTAAGCTGTAAATGGTGCTT+TGG | 0.464723 | 3_2:-70590651 | None:intergenic |
| TTGAATAGATTCTCATTGGT+TGG | 0.466553 | 3_2:-70590571 | None:intergenic |
| ATATTACTTACATAATGTGT+TGG | 0.469145 | 3_2:-70590400 | None:intergenic |
| TCTCTGGAACGCTGATGATT+GGG | 0.473167 | 3_2:+70590595 | Msa0421580:CDS |
| AGCAATGAGCTTGATGCATA+TGG | 0.481427 | 3_2:+70590743 | Msa0421580:CDS |
| AGTCATGATAATTAGCTCCT+TGG | 0.482305 | 3_2:+70589435 | Msa0421580:CDS |
| CTCGTTGCTGGAAACTCCGC+TGG | 0.483628 | 3_2:+70589631 | Msa0421580:CDS |
| TCATTGATCTCTCAGAACCT+TGG | 0.486786 | 3_2:-70590866 | None:intergenic |
| GTGTTAGATGGAGTGCGTTA+GGG | 0.489844 | 3_2:-70589260 | None:intergenic |
| CTTGGACGCTTGCACTCTGC+AGG | 0.489897 | 3_2:-70590848 | None:intergenic |
| TGTGTTAGAATTAGAAAAGA+GGG | 0.493820 | 3_2:-70589293 | None:intergenic |
| AAGTGTGGAAGTTCTTGGTT+GGG | 0.498153 | 3_2:-70590358 | None:intergenic |
| ACTCGGTAGCTTTGAAATTG+TGG | 0.503664 | 3_2:-70590676 | None:intergenic |
| CTGCAGAGTGCAAGCGTCCA+AGG | 0.505272 | 3_2:+70590849 | Msa0421580:CDS |
| ACTCTGCAGGAATACCTTCT+GGG | 0.505825 | 3_2:-70590835 | None:intergenic |
| ATATAGATTGAAAAGTGATA+AGG | 0.507150 | 3_2:-70591057 | None:intergenic |
| TTGGGCTACAAGAGGTGGTT+TGG | 0.508778 | 3_2:+70590613 | Msa0421580:CDS |
| CCAAGACTTTGATCTAACTT+GGG | 0.509119 | 3_2:+70589483 | Msa0421580:CDS |
| ACGTTTGTATGAAGAATGTA+AGG | 0.516073 | 3_2:-70590284 | None:intergenic |
| CACCGTGCTAAGATATTCAA+TGG | 0.519496 | 3_2:+70589511 | Msa0421580:CDS |
| CCCAAGTTAGATCAAAGTCT+TGG | 0.522663 | 3_2:-70589483 | None:intergenic |
| GGCATGAACAATATGCTGAT+TGG | 0.535335 | 3_2:+70589412 | Msa0421580:CDS |
| ATTGAAAAGTGATAAGGAAG+TGG | 0.537424 | 3_2:-70591051 | None:intergenic |
| ATGTGTTAGAATTAGAAAAG+AGG | 0.540042 | 3_2:-70589294 | None:intergenic |
| GAGTTCTTGGGAAATGTTAG+CGG | 0.540045 | 3_2:+70590257 | Msa0421580:CDS |
| TAAGTGTGGAAGTTCTTGGT+TGG | 0.544799 | 3_2:-70590359 | None:intergenic |
| GTGGTTTGGTGAAAACTGAT+TGG | 0.548484 | 3_2:+70590627 | Msa0421580:CDS |
| AGAACCGTTATAAAATAAGA+TGG | 0.549036 | 3_2:-70590906 | None:intergenic |
| AAATCTATTTCATCGTGTGT+TGG | 0.556214 | 3_2:-70590233 | None:intergenic |
| ATTACTTACATAATGTGTTG+GGG | 0.569004 | 3_2:-70590398 | None:intergenic |
| TGCAGAATCAGAGAAGGAAG+TGG | 0.572405 | 3_2:-70590714 | None:intergenic |
| CGATTGGAAGCCAGAGCCCG+AGG | 0.573236 | 3_2:-70589566 | None:intergenic |
| GATGATTGGGCTACAAGAGG+TGG | 0.583367 | 3_2:+70590608 | Msa0421580:CDS |
| TCCAGATGATAGAGTAAGTG+TGG | 0.584360 | 3_2:-70590373 | None:intergenic |
| ATGGTAGAAGAAGATTGAGG+TGG | 0.584786 | 3_2:+70590762 | Msa0421580:CDS |
| ATGTAATTGTTGTGATGTGA+AGG | 0.585009 | 3_2:-70589317 | None:intergenic |
| AGCAGAACATGTAGCTACCA+AGG | 0.586171 | 3_2:-70589452 | None:intergenic |
| TCTTGGTTGGGTCAAACCAA+AGG | 0.586504 | 3_2:-70590346 | None:intergenic |
| CTTTCTCTAGACAAAACCTC+GGG | 0.590397 | 3_2:+70589550 | Msa0421580:CDS |
| TCTTTCTCTAGACAAAACCT+CGG | 0.610000 | 3_2:+70589549 | Msa0421580:CDS |
| CATATGGTAGAAGAAGATTG+AGG | 0.622675 | 3_2:+70590759 | Msa0421580:CDS |
| CAAGACTTTGATCTAACTTG+GGG | 0.623881 | 3_2:+70589484 | Msa0421580:CDS |
| TTGCAATGCAGAATCAGAGA+AGG | 0.624929 | 3_2:-70590720 | None:intergenic |
| CACCATTGAATATCTTAGCA+CGG | 0.635606 | 3_2:-70589513 | None:intergenic |
| TGGTAGAAGAAGATTGAGGT+GGG | 0.642709 | 3_2:+70590763 | Msa0421580:CDS |
| ATGGTGCAGTTATCATCACA+AGG | 0.643718 | 3_2:+70590209 | Msa0421580:intron |
| GCTGATGATTGGGCTACAAG+AGG | 0.647339 | 3_2:+70590605 | Msa0421580:CDS |
| GATCTTAAGCGATTCCCAGA+AGG | 0.649786 | 3_2:+70590821 | Msa0421580:CDS |
| GGAAGAGATAGATGATAACT+CGG | 0.649852 | 3_2:-70590693 | None:intergenic |
| TGTTATGGGAATGTAATGTA+GGG | 0.652978 | 3_2:-70589220 | None:intergenic |
| TATGGGAATGTAATGTAGGG+TGG | 0.656192 | 3_2:-70589217 | None:intergenic |
| GTAAGCAGTGACGGTTCCAG+CGG | 0.667054 | 3_2:-70589647 | None:intergenic |
| ACGTACGTAGTAAGCAGTGA+CGG | 0.675655 | 3_2:-70589656 | None:intergenic |
| CGTGCTAAGATATTCAATGG+TGG | 0.692895 | 3_2:+70589514 | Msa0421580:CDS |
| TGGTGCAGTTATCATCACAA+GGG | 0.717771 | 3_2:+70590210 | Msa0421580:intron |
| CATTGAATATCTTAGCACGG+TGG | 0.785980 | 3_2:-70589510 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTCTATCTAATTAATT+CGG | + | chr3_2:70589684-70589703 | Msa0421580:intron | 10.0% |
| !! | ATCATAATAAATTAAAATAG+TGG | - | chr3_2:70590950-70590969 | None:intergenic | 10.0% |
| !!! | TTTTTTCTATCTAATTAATT+CGG | + | chr3_2:70589684-70589703 | Msa0421580:intron | 10.0% |
| !! | ATCATAATAAATTAAAATAG+TGG | - | chr3_2:70590950-70590969 | None:intergenic | 10.0% |
| !! | ATTAATTAGATAGAAAAAAG+AGG | - | chr3_2:70589683-70589702 | None:intergenic | 15.0% |
| !! | GAATATAATATATAAATGTG+AGG | - | chr3_2:70589858-70589877 | None:intergenic | 15.0% |
| !!! | TATATTCCTCTATATTTTTT+TGG | + | chr3_2:70590982-70591001 | Msa0421580:three_prime_UTR | 15.0% |
| !! | ATTAATTAGATAGAAAAAAG+AGG | - | chr3_2:70589683-70589702 | None:intergenic | 15.0% |
| !! | GAATATAATATATAAATGTG+AGG | - | chr3_2:70589858-70589877 | None:intergenic | 15.0% |
| !!! | TATATTCCTCTATATTTTTT+TGG | + | chr3_2:70590982-70591001 | Msa0421580:three_prime_UTR | 15.0% |
| !! | ATAATATATAAATGTGAGGA+AGG | - | chr3_2:70589854-70589873 | None:intergenic | 20.0% |
| !! | TGAGATTAGAACATAAATAA+CGG | - | chr3_2:70589956-70589975 | None:intergenic | 20.0% |
| !!! | TAGAAGTATATGATTTTCAA+TGG | + | chr3_2:70590190-70590209 | Msa0421580:intron | 20.0% |
| !! | TATTACTTACATAATGTGTT+GGG | - | chr3_2:70590402-70590421 | None:intergenic | 20.0% |
| !! | ATATTACTTACATAATGTGT+TGG | - | chr3_2:70590403-70590422 | None:intergenic | 20.0% |
| !!! | ATAGCCATCTTATTTTATAA+CGG | + | chr3_2:70590902-70590921 | Msa0421580:three_prime_UTR | 20.0% |
| !! | ATATAGATTGAAAAGTGATA+AGG | - | chr3_2:70591060-70591079 | None:intergenic | 20.0% |
| !! | ATAATATATAAATGTGAGGA+AGG | - | chr3_2:70589854-70589873 | None:intergenic | 20.0% |
| !! | TGAGATTAGAACATAAATAA+CGG | - | chr3_2:70589956-70589975 | None:intergenic | 20.0% |
| !!! | TAGAAGTATATGATTTTCAA+TGG | + | chr3_2:70590190-70590209 | Msa0421580:intron | 20.0% |
| !! | TATTACTTACATAATGTGTT+GGG | - | chr3_2:70590402-70590421 | None:intergenic | 20.0% |
| !! | ATATTACTTACATAATGTGT+TGG | - | chr3_2:70590403-70590422 | None:intergenic | 20.0% |
| !!! | ATAGCCATCTTATTTTATAA+CGG | + | chr3_2:70590902-70590921 | Msa0421580:three_prime_UTR | 20.0% |
| !! | ATATAGATTGAAAAGTGATA+AGG | - | chr3_2:70591060-70591079 | None:intergenic | 20.0% |
| ! | TTGGAATGAGAATATGTTAT+GGG | - | chr3_2:70589237-70589256 | None:intergenic | 25.0% |
| ! | ATTGGAATGAGAATATGTTA+TGG | - | chr3_2:70589238-70589257 | None:intergenic | 25.0% |
| ! | TGTGTTAGAATTAGAAAAGA+GGG | - | chr3_2:70589296-70589315 | None:intergenic | 25.0% |
| ! | ATGTGTTAGAATTAGAAAAG+AGG | - | chr3_2:70589297-70589316 | None:intergenic | 25.0% |
| ! | TCTGTCCAAATCAATTAATA+TGG | + | chr3_2:70589378-70589397 | Msa0421580:exon | 25.0% |
| ! | AGAAGCCATATTAATTGATT+TGG | - | chr3_2:70589386-70589405 | None:intergenic | 25.0% |
| ! | ATTAATATGGCTTCTTCTAT+TGG | + | chr3_2:70589391-70589410 | Msa0421580:exon | 25.0% |
| ! | ATAAATACTCTTTCTTCGAT+TGG | - | chr3_2:70589585-70589604 | None:intergenic | 25.0% |
| !!! | TCGAAGAAAGAGTATTTATT+TGG | + | chr3_2:70589586-70589605 | Msa0421580:CDS | 25.0% |
| !! | AAGTGTAGTTTTTGCAAAAA+TGG | + | chr3_2:70589769-70589788 | Msa0421580:intron | 25.0% |
| !! | TAACGGTTGTATTTTTCATA+TGG | - | chr3_2:70589939-70589958 | None:intergenic | 25.0% |
| !!! | TTACATATAACTTGGTTTGT+GGG | - | chr3_2:70590045-70590064 | None:intergenic | 25.0% |
| ! | GTACAAAGTTACATATAACT+TGG | - | chr3_2:70590053-70590072 | None:intergenic | 25.0% |
| !!! | TGAAATAGATTTTGAGTTCT+TGG | + | chr3_2:70590244-70590263 | Msa0421580:CDS | 25.0% |
| !!! | GAAATAGATTTTGAGTTCTT+GGG | + | chr3_2:70590245-70590264 | Msa0421580:CDS | 25.0% |
| ! | ATTACTTACATAATGTGTTG+GGG | - | chr3_2:70590401-70590420 | None:intergenic | 25.0% |
| ! | AGAACCGTTATAAAATAAGA+TGG | - | chr3_2:70590909-70590928 | None:intergenic | 25.0% |
| ! | TAGACACCAAAAAAATATAG+AGG | - | chr3_2:70590991-70591010 | None:intergenic | 25.0% |
| ! | TTGGAATGAGAATATGTTAT+GGG | - | chr3_2:70589237-70589256 | None:intergenic | 25.0% |
| ! | ATTGGAATGAGAATATGTTA+TGG | - | chr3_2:70589238-70589257 | None:intergenic | 25.0% |
| ! | TGTGTTAGAATTAGAAAAGA+GGG | - | chr3_2:70589296-70589315 | None:intergenic | 25.0% |
| ! | ATGTGTTAGAATTAGAAAAG+AGG | - | chr3_2:70589297-70589316 | None:intergenic | 25.0% |
| ! | TCTGTCCAAATCAATTAATA+TGG | + | chr3_2:70589378-70589397 | Msa0421580:exon | 25.0% |
| ! | AGAAGCCATATTAATTGATT+TGG | - | chr3_2:70589386-70589405 | None:intergenic | 25.0% |
| ! | ATTAATATGGCTTCTTCTAT+TGG | + | chr3_2:70589391-70589410 | Msa0421580:exon | 25.0% |
| ! | ATAAATACTCTTTCTTCGAT+TGG | - | chr3_2:70589585-70589604 | None:intergenic | 25.0% |
| !!! | TCGAAGAAAGAGTATTTATT+TGG | + | chr3_2:70589586-70589605 | Msa0421580:CDS | 25.0% |
| !! | AAGTGTAGTTTTTGCAAAAA+TGG | + | chr3_2:70589769-70589788 | Msa0421580:intron | 25.0% |
| !! | TAACGGTTGTATTTTTCATA+TGG | - | chr3_2:70589939-70589958 | None:intergenic | 25.0% |
| !!! | TTACATATAACTTGGTTTGT+GGG | - | chr3_2:70590045-70590064 | None:intergenic | 25.0% |
| ! | GTACAAAGTTACATATAACT+TGG | - | chr3_2:70590053-70590072 | None:intergenic | 25.0% |
| !!! | TGAAATAGATTTTGAGTTCT+TGG | + | chr3_2:70590244-70590263 | Msa0421580:CDS | 25.0% |
| !!! | GAAATAGATTTTGAGTTCTT+GGG | + | chr3_2:70590245-70590264 | Msa0421580:CDS | 25.0% |
| ! | ATTACTTACATAATGTGTTG+GGG | - | chr3_2:70590401-70590420 | None:intergenic | 25.0% |
| ! | AGAACCGTTATAAAATAAGA+TGG | - | chr3_2:70590909-70590928 | None:intergenic | 25.0% |
| ! | TAGACACCAAAAAAATATAG+AGG | - | chr3_2:70590991-70591010 | None:intergenic | 25.0% |
| TGTTATGGGAATGTAATGTA+GGG | - | chr3_2:70589223-70589242 | None:intergenic | 30.0% | |
| ATGTTATGGGAATGTAATGT+AGG | - | chr3_2:70589224-70589243 | None:intergenic | 30.0% | |
| GGTCTATATAATGTGTTAGA+TGG | - | chr3_2:70589275-70589294 | None:intergenic | 30.0% | |
| ATGTAATTGTTGTGATGTGA+AGG | - | chr3_2:70589320-70589339 | None:intergenic | 30.0% | |
| !! | AATTCGGTGTATGATTAGAT+TGG | + | chr3_2:70589700-70589719 | Msa0421580:intron | 30.0% |
| TTGCAAAATCATTGTAACAC+TGG | + | chr3_2:70589732-70589751 | Msa0421580:intron | 30.0% | |
| ! | TGTAGTTTTTGCAAAAATGG+TGG | + | chr3_2:70589772-70589791 | Msa0421580:intron | 30.0% |
| TTTCAAAAGCAACTTTACCT+TGG | + | chr3_2:70589884-70589903 | Msa0421580:intron | 30.0% | |
| TGTCGTGAATGCATAAATAA+CGG | - | chr3_2:70590001-70590020 | None:intergenic | 30.0% | |
| ! | GTTACATATAACTTGGTTTG+TGG | - | chr3_2:70590046-70590065 | None:intergenic | 30.0% |
| !! | TAGTTTGCTTCTTTGTATTG+CGG | + | chr3_2:70590155-70590174 | Msa0421580:intron | 30.0% |
| AAATCTATTTCATCGTGTGT+TGG | - | chr3_2:70590236-70590255 | None:intergenic | 30.0% | |
| ACGTTTGTATGAAGAATGTA+AGG | - | chr3_2:70590287-70590306 | None:intergenic | 30.0% | |
| !! | TAGTTATACGAACTTGTTAG+CGG | - | chr3_2:70590472-70590491 | None:intergenic | 30.0% |
| !! | TAGTTGATAACATCCCTATA+AGG | + | chr3_2:70590504-70590523 | Msa0421580:CDS | 30.0% |
| CATTCTTGAAGATCCTTATA+GGG | - | chr3_2:70590520-70590539 | None:intergenic | 30.0% | |
| TTCAAGAATGCTGAATCAAT+TGG | + | chr3_2:70590530-70590549 | Msa0421580:CDS | 30.0% | |
| TTGAATAGATTCTCATTGGT+TGG | - | chr3_2:70590574-70590593 | None:intergenic | 30.0% | |
| AGACTTGAATAGATTCTCAT+TGG | - | chr3_2:70590578-70590597 | None:intergenic | 30.0% | |
| ATTGAAAAGTGATAAGGAAG+TGG | - | chr3_2:70591054-70591073 | None:intergenic | 30.0% | |
| TGTTATGGGAATGTAATGTA+GGG | - | chr3_2:70589223-70589242 | None:intergenic | 30.0% | |
| ATGTTATGGGAATGTAATGT+AGG | - | chr3_2:70589224-70589243 | None:intergenic | 30.0% | |
| GGTCTATATAATGTGTTAGA+TGG | - | chr3_2:70589275-70589294 | None:intergenic | 30.0% | |
| ATGTAATTGTTGTGATGTGA+AGG | - | chr3_2:70589320-70589339 | None:intergenic | 30.0% | |
| !! | AATTCGGTGTATGATTAGAT+TGG | + | chr3_2:70589700-70589719 | Msa0421580:intron | 30.0% |
| TTGCAAAATCATTGTAACAC+TGG | + | chr3_2:70589732-70589751 | Msa0421580:intron | 30.0% | |
| ! | TGTAGTTTTTGCAAAAATGG+TGG | + | chr3_2:70589772-70589791 | Msa0421580:intron | 30.0% |
| TTTCAAAAGCAACTTTACCT+TGG | + | chr3_2:70589884-70589903 | Msa0421580:intron | 30.0% | |
| TGTCGTGAATGCATAAATAA+CGG | - | chr3_2:70590001-70590020 | None:intergenic | 30.0% | |
| ! | GTTACATATAACTTGGTTTG+TGG | - | chr3_2:70590046-70590065 | None:intergenic | 30.0% |
| !! | TAGTTTGCTTCTTTGTATTG+CGG | + | chr3_2:70590155-70590174 | Msa0421580:intron | 30.0% |
| AAATCTATTTCATCGTGTGT+TGG | - | chr3_2:70590236-70590255 | None:intergenic | 30.0% | |
| ACGTTTGTATGAAGAATGTA+AGG | - | chr3_2:70590287-70590306 | None:intergenic | 30.0% | |
| !! | TAGTTATACGAACTTGTTAG+CGG | - | chr3_2:70590472-70590491 | None:intergenic | 30.0% |
| !! | TAGTTGATAACATCCCTATA+AGG | + | chr3_2:70590504-70590523 | Msa0421580:CDS | 30.0% |
| CATTCTTGAAGATCCTTATA+GGG | - | chr3_2:70590520-70590539 | None:intergenic | 30.0% | |
| TTCAAGAATGCTGAATCAAT+TGG | + | chr3_2:70590530-70590549 | Msa0421580:CDS | 30.0% | |
| TTGAATAGATTCTCATTGGT+TGG | - | chr3_2:70590574-70590593 | None:intergenic | 30.0% | |
| AGACTTGAATAGATTCTCAT+TGG | - | chr3_2:70590578-70590597 | None:intergenic | 30.0% | |
| ATTGAAAAGTGATAAGGAAG+TGG | - | chr3_2:70591054-70591073 | None:intergenic | 30.0% | |
| AGTCATGATAATTAGCTCCT+TGG | + | chr3_2:70589435-70589454 | Msa0421580:CDS | 35.0% | |
| ACCAAGACTTTGATCTAACT+TGG | + | chr3_2:70589482-70589501 | Msa0421580:CDS | 35.0% | |
| CCAAGACTTTGATCTAACTT+GGG | + | chr3_2:70589483-70589502 | Msa0421580:CDS | 35.0% | |
| CAAGACTTTGATCTAACTTG+GGG | + | chr3_2:70589484-70589503 | Msa0421580:CDS | 35.0% | |
| CACCATTGAATATCTTAGCA+CGG | - | chr3_2:70589516-70589535 | None:intergenic | 35.0% | |
| TCTTTCTCTAGACAAAACCT+CGG | + | chr3_2:70589549-70589568 | Msa0421580:CDS | 35.0% | |
| ! | AGTTTTTGCAAAAATGGTGG+TGG | + | chr3_2:70589775-70589794 | Msa0421580:intron | 35.0% |
| TATATAAATGTGAGGAAGGC+AGG | - | chr3_2:70589850-70589869 | None:intergenic | 35.0% | |
| CATTTGATATCAAGAAGCCA+AGG | - | chr3_2:70589904-70589923 | None:intergenic | 35.0% | |
| !! | TATAACTTGGTTTGTGGGTT+TGG | - | chr3_2:70590040-70590059 | None:intergenic | 35.0% |
| ! | CATACAAACGTGTTTTCTCA+AGG | + | chr3_2:70590296-70590315 | Msa0421580:CDS | 35.0% |
| GAGAACAACAATTCTACCTT+TGG | + | chr3_2:70590330-70590349 | Msa0421580:CDS | 35.0% | |
| GCATTCTTGAAGATCCTTAT+AGG | - | chr3_2:70590521-70590540 | None:intergenic | 35.0% | |
| ! | TTCTCATTGGTTGGTTCTTT+GGG | - | chr3_2:70590565-70590584 | None:intergenic | 35.0% |
| ! | ATTCTCATTGGTTGGTTCTT+TGG | - | chr3_2:70590566-70590585 | None:intergenic | 35.0% |
| TGAGAATCTATTCAAGTCTC+TGG | + | chr3_2:70590579-70590598 | Msa0421580:CDS | 35.0% | |
| TTGTGGTAGTAAGCTGTAAA+TGG | - | chr3_2:70590662-70590681 | None:intergenic | 35.0% | |
| GGAAGAGATAGATGATAACT+CGG | - | chr3_2:70590696-70590715 | None:intergenic | 35.0% | |
| CATATGGTAGAAGAAGATTG+AGG | + | chr3_2:70590759-70590778 | Msa0421580:CDS | 35.0% | |
| AGTCATGATAATTAGCTCCT+TGG | + | chr3_2:70589435-70589454 | Msa0421580:CDS | 35.0% | |
| ACCAAGACTTTGATCTAACT+TGG | + | chr3_2:70589482-70589501 | Msa0421580:CDS | 35.0% | |
| CCAAGACTTTGATCTAACTT+GGG | + | chr3_2:70589483-70589502 | Msa0421580:CDS | 35.0% | |
| CAAGACTTTGATCTAACTTG+GGG | + | chr3_2:70589484-70589503 | Msa0421580:CDS | 35.0% | |
| CACCATTGAATATCTTAGCA+CGG | - | chr3_2:70589516-70589535 | None:intergenic | 35.0% | |
| TCTTTCTCTAGACAAAACCT+CGG | + | chr3_2:70589549-70589568 | Msa0421580:CDS | 35.0% | |
| ! | AGTTTTTGCAAAAATGGTGG+TGG | + | chr3_2:70589775-70589794 | Msa0421580:intron | 35.0% |
| TATATAAATGTGAGGAAGGC+AGG | - | chr3_2:70589850-70589869 | None:intergenic | 35.0% | |
| CATTTGATATCAAGAAGCCA+AGG | - | chr3_2:70589904-70589923 | None:intergenic | 35.0% | |
| !! | TATAACTTGGTTTGTGGGTT+TGG | - | chr3_2:70590040-70590059 | None:intergenic | 35.0% |
| ! | CATACAAACGTGTTTTCTCA+AGG | + | chr3_2:70590296-70590315 | Msa0421580:CDS | 35.0% |
| GAGAACAACAATTCTACCTT+TGG | + | chr3_2:70590330-70590349 | Msa0421580:CDS | 35.0% | |
| GCATTCTTGAAGATCCTTAT+AGG | - | chr3_2:70590521-70590540 | None:intergenic | 35.0% | |
| ! | TTCTCATTGGTTGGTTCTTT+GGG | - | chr3_2:70590565-70590584 | None:intergenic | 35.0% |
| ! | ATTCTCATTGGTTGGTTCTT+TGG | - | chr3_2:70590566-70590585 | None:intergenic | 35.0% |
| TGAGAATCTATTCAAGTCTC+TGG | + | chr3_2:70590579-70590598 | Msa0421580:CDS | 35.0% | |
| TTGTGGTAGTAAGCTGTAAA+TGG | - | chr3_2:70590662-70590681 | None:intergenic | 35.0% | |
| GGAAGAGATAGATGATAACT+CGG | - | chr3_2:70590696-70590715 | None:intergenic | 35.0% | |
| CATATGGTAGAAGAAGATTG+AGG | + | chr3_2:70590759-70590778 | Msa0421580:CDS | 35.0% | |
| TATGGGAATGTAATGTAGGG+TGG | - | chr3_2:70589220-70589239 | None:intergenic | 40.0% | |
| GGCATGAACAATATGCTGAT+TGG | + | chr3_2:70589412-70589431 | Msa0421580:CDS | 40.0% | |
| CCCAAGTTAGATCAAAGTCT+TGG | - | chr3_2:70589486-70589505 | None:intergenic | 40.0% | |
| CATTGAATATCTTAGCACGG+TGG | - | chr3_2:70589513-70589532 | None:intergenic | 40.0% | |
| CACCGTGCTAAGATATTCAA+TGG | + | chr3_2:70589511-70589530 | Msa0421580:CDS | 40.0% | |
| CGTGCTAAGATATTCAATGG+TGG | + | chr3_2:70589514-70589533 | Msa0421580:CDS | 40.0% | |
| CTTTCTCTAGACAAAACCTC+GGG | + | chr3_2:70589550-70589569 | Msa0421580:CDS | 40.0% | |
| ATGGTGCAGTTATCATCACA+AGG | + | chr3_2:70590209-70590228 | Msa0421580:intron | 40.0% | |
| TGGTGCAGTTATCATCACAA+GGG | + | chr3_2:70590210-70590229 | Msa0421580:intron | 40.0% | |
| GAGTTCTTGGGAAATGTTAG+CGG | + | chr3_2:70590257-70590276 | Msa0421580:CDS | 40.0% | |
| ! | AACGTGTTTTCTCAAGGCAA+AGG | + | chr3_2:70590302-70590321 | Msa0421580:CDS | 40.0% |
| AAGTGTGGAAGTTCTTGGTT+GGG | - | chr3_2:70590361-70590380 | None:intergenic | 40.0% | |
| TAAGTGTGGAAGTTCTTGGT+TGG | - | chr3_2:70590362-70590381 | None:intergenic | 40.0% | |
| AGAGTAAGTGTGGAAGTTCT+TGG | - | chr3_2:70590366-70590385 | None:intergenic | 40.0% | |
| TCCACACTTACTCTATCATC+TGG | + | chr3_2:70590372-70590391 | Msa0421580:CDS | 40.0% | |
| TCCAGATGATAGAGTAAGTG+TGG | - | chr3_2:70590376-70590395 | None:intergenic | 40.0% | |
| ! | ATTGGTTGGTTCTTTGGGAA+TGG | - | chr3_2:70590560-70590579 | None:intergenic | 40.0% |
| !! | GTGGTTTGGTGAAAACTGAT+TGG | + | chr3_2:70590627-70590646 | Msa0421580:CDS | 40.0% |
| GTAAGCTGTAAATGGTGCTT+TGG | - | chr3_2:70590654-70590673 | None:intergenic | 40.0% | |
| !! | ACTCGGTAGCTTTGAAATTG+TGG | - | chr3_2:70590679-70590698 | None:intergenic | 40.0% |
| TTGCAATGCAGAATCAGAGA+AGG | - | chr3_2:70590723-70590742 | None:intergenic | 40.0% | |
| AGCAATGAGCTTGATGCATA+TGG | + | chr3_2:70590743-70590762 | Msa0421580:CDS | 40.0% | |
| ATGGTAGAAGAAGATTGAGG+TGG | + | chr3_2:70590762-70590781 | Msa0421580:CDS | 40.0% | |
| TGGTAGAAGAAGATTGAGGT+GGG | + | chr3_2:70590763-70590782 | Msa0421580:CDS | 40.0% | |
| TCATTGATCTCTCAGAACCT+TGG | - | chr3_2:70590869-70590888 | None:intergenic | 40.0% | |
| TATGGGAATGTAATGTAGGG+TGG | - | chr3_2:70589220-70589239 | None:intergenic | 40.0% | |
| GGCATGAACAATATGCTGAT+TGG | + | chr3_2:70589412-70589431 | Msa0421580:CDS | 40.0% | |
| CCCAAGTTAGATCAAAGTCT+TGG | - | chr3_2:70589486-70589505 | None:intergenic | 40.0% | |
| CATTGAATATCTTAGCACGG+TGG | - | chr3_2:70589513-70589532 | None:intergenic | 40.0% | |
| CACCGTGCTAAGATATTCAA+TGG | + | chr3_2:70589511-70589530 | Msa0421580:CDS | 40.0% | |
| CGTGCTAAGATATTCAATGG+TGG | + | chr3_2:70589514-70589533 | Msa0421580:CDS | 40.0% | |
| CTTTCTCTAGACAAAACCTC+GGG | + | chr3_2:70589550-70589569 | Msa0421580:CDS | 40.0% | |
| ATGGTGCAGTTATCATCACA+AGG | + | chr3_2:70590209-70590228 | Msa0421580:intron | 40.0% | |
| TGGTGCAGTTATCATCACAA+GGG | + | chr3_2:70590210-70590229 | Msa0421580:intron | 40.0% | |
| GAGTTCTTGGGAAATGTTAG+CGG | + | chr3_2:70590257-70590276 | Msa0421580:CDS | 40.0% | |
| ! | AACGTGTTTTCTCAAGGCAA+AGG | + | chr3_2:70590302-70590321 | Msa0421580:CDS | 40.0% |
| AAGTGTGGAAGTTCTTGGTT+GGG | - | chr3_2:70590361-70590380 | None:intergenic | 40.0% | |
| TAAGTGTGGAAGTTCTTGGT+TGG | - | chr3_2:70590362-70590381 | None:intergenic | 40.0% | |
| AGAGTAAGTGTGGAAGTTCT+TGG | - | chr3_2:70590366-70590385 | None:intergenic | 40.0% | |
| TCCACACTTACTCTATCATC+TGG | + | chr3_2:70590372-70590391 | Msa0421580:CDS | 40.0% | |
| TCCAGATGATAGAGTAAGTG+TGG | - | chr3_2:70590376-70590395 | None:intergenic | 40.0% | |
| ! | ATTGGTTGGTTCTTTGGGAA+TGG | - | chr3_2:70590560-70590579 | None:intergenic | 40.0% |
| !! | GTGGTTTGGTGAAAACTGAT+TGG | + | chr3_2:70590627-70590646 | Msa0421580:CDS | 40.0% |
| GTAAGCTGTAAATGGTGCTT+TGG | - | chr3_2:70590654-70590673 | None:intergenic | 40.0% | |
| !! | ACTCGGTAGCTTTGAAATTG+TGG | - | chr3_2:70590679-70590698 | None:intergenic | 40.0% |
| TTGCAATGCAGAATCAGAGA+AGG | - | chr3_2:70590723-70590742 | None:intergenic | 40.0% | |
| AGCAATGAGCTTGATGCATA+TGG | + | chr3_2:70590743-70590762 | Msa0421580:CDS | 40.0% | |
| ATGGTAGAAGAAGATTGAGG+TGG | + | chr3_2:70590762-70590781 | Msa0421580:CDS | 40.0% | |
| TGGTAGAAGAAGATTGAGGT+GGG | + | chr3_2:70590763-70590782 | Msa0421580:CDS | 40.0% | |
| TCATTGATCTCTCAGAACCT+TGG | - | chr3_2:70590869-70590888 | None:intergenic | 40.0% | |
| ATGGAGTGCGTTAGGGAAAT+TGG | - | chr3_2:70589256-70589275 | None:intergenic | 45.0% | |
| GTGTTAGATGGAGTGCGTTA+GGG | - | chr3_2:70589263-70589282 | None:intergenic | 45.0% | |
| TGTGTTAGATGGAGTGCGTT+AGG | - | chr3_2:70589264-70589283 | None:intergenic | 45.0% | |
| AGCAGAACATGTAGCTACCA+AGG | - | chr3_2:70589455-70589474 | None:intergenic | 45.0% | |
| ATGCAACTCAAACTCGTTGC+TGG | + | chr3_2:70589619-70589638 | Msa0421580:CDS | 45.0% | |
| ACGTACGTAGTAAGCAGTGA+CGG | - | chr3_2:70589659-70589678 | None:intergenic | 45.0% | |
| TCTTGGTTGGGTCAAACCAA+AGG | - | chr3_2:70590349-70590368 | None:intergenic | 45.0% | |
| !! | TCTCTGGAACGCTGATGATT+GGG | + | chr3_2:70590595-70590614 | Msa0421580:CDS | 45.0% |
| TGCAGAATCAGAGAAGGAAG+TGG | - | chr3_2:70590717-70590736 | None:intergenic | 45.0% | |
| GATCTTAAGCGATTCCCAGA+AGG | + | chr3_2:70590821-70590840 | Msa0421580:CDS | 45.0% | |
| ACTCTGCAGGAATACCTTCT+GGG | - | chr3_2:70590838-70590857 | None:intergenic | 45.0% | |
| ATGGAGTGCGTTAGGGAAAT+TGG | - | chr3_2:70589256-70589275 | None:intergenic | 45.0% | |
| GTGTTAGATGGAGTGCGTTA+GGG | - | chr3_2:70589263-70589282 | None:intergenic | 45.0% | |
| TGTGTTAGATGGAGTGCGTT+AGG | - | chr3_2:70589264-70589283 | None:intergenic | 45.0% | |
| AGCAGAACATGTAGCTACCA+AGG | - | chr3_2:70589455-70589474 | None:intergenic | 45.0% | |
| ATGCAACTCAAACTCGTTGC+TGG | + | chr3_2:70589619-70589638 | Msa0421580:CDS | 45.0% | |
| ACGTACGTAGTAAGCAGTGA+CGG | - | chr3_2:70589659-70589678 | None:intergenic | 45.0% | |
| TCTTGGTTGGGTCAAACCAA+AGG | - | chr3_2:70590349-70590368 | None:intergenic | 45.0% | |
| !! | TCTCTGGAACGCTGATGATT+GGG | + | chr3_2:70590595-70590614 | Msa0421580:CDS | 45.0% |
| TGCAGAATCAGAGAAGGAAG+TGG | - | chr3_2:70590717-70590736 | None:intergenic | 45.0% | |
| GATCTTAAGCGATTCCCAGA+AGG | + | chr3_2:70590821-70590840 | Msa0421580:CDS | 45.0% | |
| ACTCTGCAGGAATACCTTCT+GGG | - | chr3_2:70590838-70590857 | None:intergenic | 45.0% | |
| !! | CTTGGTTTGTGGGTTTGGTG+CGG | - | chr3_2:70590035-70590054 | None:intergenic | 50.0% |
| !! | GTCTCTGGAACGCTGATGAT+TGG | + | chr3_2:70590594-70590613 | Msa0421580:CDS | 50.0% |
| GCTGATGATTGGGCTACAAG+AGG | + | chr3_2:70590605-70590624 | Msa0421580:CDS | 50.0% | |
| GATGATTGGGCTACAAGAGG+TGG | + | chr3_2:70590608-70590627 | Msa0421580:CDS | 50.0% | |
| TTGGGCTACAAGAGGTGGTT+TGG | + | chr3_2:70590613-70590632 | Msa0421580:CDS | 50.0% | |
| CACTCTGCAGGAATACCTTC+TGG | - | chr3_2:70590839-70590858 | None:intergenic | 50.0% | |
| !! | CTTGGTTTGTGGGTTTGGTG+CGG | - | chr3_2:70590035-70590054 | None:intergenic | 50.0% |
| !! | GTCTCTGGAACGCTGATGAT+TGG | + | chr3_2:70590594-70590613 | Msa0421580:CDS | 50.0% |
| GCTGATGATTGGGCTACAAG+AGG | + | chr3_2:70590605-70590624 | Msa0421580:CDS | 50.0% | |
| GATGATTGGGCTACAAGAGG+TGG | + | chr3_2:70590608-70590627 | Msa0421580:CDS | 50.0% | |
| TTGGGCTACAAGAGGTGGTT+TGG | + | chr3_2:70590613-70590632 | Msa0421580:CDS | 50.0% | |
| CACTCTGCAGGAATACCTTC+TGG | - | chr3_2:70590839-70590858 | None:intergenic | 50.0% | |
| CTAGACAAAACCTCGGGCTC+TGG | + | chr3_2:70589556-70589575 | Msa0421580:CDS | 55.0% | |
| GTAAGCAGTGACGGTTCCAG+CGG | - | chr3_2:70589650-70589669 | None:intergenic | 55.0% | |
| CTAGACAAAACCTCGGGCTC+TGG | + | chr3_2:70589556-70589575 | Msa0421580:CDS | 55.0% | |
| GTAAGCAGTGACGGTTCCAG+CGG | - | chr3_2:70589650-70589669 | None:intergenic | 55.0% | |
| CTCGTTGCTGGAAACTCCGC+TGG | + | chr3_2:70589631-70589650 | Msa0421580:CDS | 60.0% | |
| CTTGGACGCTTGCACTCTGC+AGG | - | chr3_2:70590851-70590870 | None:intergenic | 60.0% | |
| CTGCAGAGTGCAAGCGTCCA+AGG | + | chr3_2:70590849-70590868 | Msa0421580:CDS | 60.0% | |
| CTCGTTGCTGGAAACTCCGC+TGG | + | chr3_2:70589631-70589650 | Msa0421580:CDS | 60.0% | |
| CTTGGACGCTTGCACTCTGC+AGG | - | chr3_2:70590851-70590870 | None:intergenic | 60.0% | |
| CTGCAGAGTGCAAGCGTCCA+AGG | + | chr3_2:70590849-70590868 | Msa0421580:CDS | 60.0% | |
| CGATTGGAAGCCAGAGCCCG+AGG | - | chr3_2:70589569-70589588 | None:intergenic | 65.0% | |
| CGATTGGAAGCCAGAGCCCG+AGG | - | chr3_2:70589569-70589588 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 70589210 | 70591109 | 70589210 | ID=Msa0421580;Name=Msa0421580 |
| chr3_2 | mRNA | 70589210 | 70591109 | 70589210 | ID=Msa0421580-mRNA-1;Parent=Msa0421580;Name=Msa0421580-mRNA-1;_AED=0.25;_eAED=0.25;_QI=187|1|1|1|1|1|3|232|282 |
| chr3_2 | exon | 70589210 | 70589672 | 70589210 | ID=Msa0421580-mRNA-1:exon:17013;Parent=Msa0421580-mRNA-1 |
| chr3_2 | exon | 70590218 | 70590411 | 70590218 | ID=Msa0421580-mRNA-1:exon:17014;Parent=Msa0421580-mRNA-1 |
| chr3_2 | exon | 70590499 | 70591109 | 70590499 | ID=Msa0421580-mRNA-1:exon:17015;Parent=Msa0421580-mRNA-1 |
| chr3_2 | five_prime_UTR | 70589210 | 70589396 | 70589210 | ID=Msa0421580-mRNA-1:five_prime_utr;Parent=Msa0421580-mRNA-1 |
| chr3_2 | CDS | 70589397 | 70589672 | 70589397 | ID=Msa0421580-mRNA-1:cds;Parent=Msa0421580-mRNA-1 |
| chr3_2 | CDS | 70590218 | 70590411 | 70590218 | ID=Msa0421580-mRNA-1:cds;Parent=Msa0421580-mRNA-1 |
| chr3_2 | CDS | 70590499 | 70590877 | 70590499 | ID=Msa0421580-mRNA-1:cds;Parent=Msa0421580-mRNA-1 |
| chr3_2 | three_prime_UTR | 70590878 | 70591109 | 70590878 | ID=Msa0421580-mRNA-1:three_prime_utr;Parent=Msa0421580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
