Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088150 | XP_003601714.1 | 97.872 | 282 | 6 | 0 | 1 | 282 | 1 | 282 | 0.0 | 581 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088150 | sp|P35694|XTH2_SOYBN | 83.099 | 284 | 42 | 2 | 1 | 279 | 1 | 283 | 2.23e-177 | 493 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088150 | G7JAU8 | 97.872 | 282 | 6 | 0 | 1 | 282 | 1 | 282 | 0.0 | 581 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0607120 | Msa1088150 | 0.822297 | 2.554686e-53 | -8.615850e-47 |
| Msa0627580 | Msa1088150 | 0.825311 | 5.023933e-54 | -8.615850e-47 |
| Msa0646190 | Msa1088150 | -0.802741 | 4.857463e-49 | -8.615850e-47 |
| Msa0647320 | Msa1088150 | 0.830395 | 3.007964e-55 | -8.615850e-47 |
| Msa0690190 | Msa1088150 | 0.843670 | 1.214988e-58 | -8.615850e-47 |
| Msa0690930 | Msa1088150 | 0.821983 | 3.020007e-53 | -8.615850e-47 |
| Msa0707490 | Msa1088150 | 0.887969 | 8.939563e-73 | -8.615850e-47 |
| Msa0758400 | Msa1088150 | 0.802148 | 6.436483e-49 | -8.615850e-47 |
| Msa0198210 | Msa1088150 | 0.833567 | 4.953311e-56 | -8.615850e-47 |
| Msa0207680 | Msa1088150 | 0.813809 | 2.120460e-51 | -8.615850e-47 |
| Msa0209360 | Msa1088150 | 0.817327 | 3.492713e-52 | -8.615850e-47 |
| Msa0371510 | Msa1088150 | 0.851815 | 6.941332e-61 | -8.615850e-47 |
| Msa0373050 | Msa1088150 | 0.939653 | 8.843847e-100 | -8.615850e-47 |
| Msa0373060 | Msa1088150 | 0.933865 | 9.767900e-96 | -8.615850e-47 |
| Msa0380980 | Msa1088150 | 0.801651 | 8.144057e-49 | -8.615850e-47 |
| Msa0381100 | Msa1088150 | 0.804346 | 2.257783e-49 | -8.615850e-47 |
| Msa0382460 | Msa1088150 | 0.837434 | 5.209102e-57 | -8.615850e-47 |
| Msa0419730 | Msa1088150 | 0.833875 | 4.147516e-56 | -8.615850e-47 |
| Msa0419860 | Msa1088150 | 0.828568 | 8.364288e-55 | -8.615850e-47 |
| Msa0421580 | Msa1088150 | 0.910348 | 2.071362e-82 | -8.615850e-47 |
| Msa0421590 | Msa1088150 | 0.919598 | 3.687218e-87 | -8.615850e-47 |
| Msa0447440 | Msa1088150 | 0.811680 | 6.203296e-51 | -8.615850e-47 |
| Msa0450030 | Msa1088150 | 0.840524 | 8.257319e-58 | -8.615850e-47 |
| Msa0467590 | Msa1088150 | 0.917570 | 4.520958e-86 | -8.615850e-47 |
| Msa0467600 | Msa1088150 | 0.926324 | 5.480944e-91 | -8.615850e-47 |
| Msa0476960 | Msa1088150 | 0.840997 | 6.204662e-58 | -8.615850e-47 |
| Msa1088150 | Msa1088160 | 0.940811 | 1.231457e-100 | -8.615850e-47 |
| Msa1088150 | Msa1315760 | 0.802755 | 4.825620e-49 | -8.615850e-47 |
| Msa1088150 | Msa1412500 | 0.832677 | 8.245360e-56 | -8.615850e-47 |
| Msa1088150 | Msa1451000 | 0.893580 | 5.506886e-75 | -8.615850e-47 |
| Msa0242820 | Msa1088150 | 0.824739 | 6.856002e-54 | -8.615850e-47 |
| Msa0287640 | Msa1088150 | 0.808321 | 3.280679e-50 | -8.615850e-47 |
| Msa0287660 | Msa1088150 | 0.832351 | 9.932847e-56 | -8.615850e-47 |
| Msa0494950 | Msa1088150 | 0.812163 | 4.867201e-51 | -8.615850e-47 |
| Msa0524840 | Msa1088150 | 0.802449 | 5.580516e-49 | -8.615850e-47 |
| Msa0524950 | Msa1088150 | 0.803794 | 2.940506e-49 | -8.615850e-47 |
| Msa0555280 | Msa1088150 | 0.806748 | 7.076518e-50 | -8.615850e-47 |
| Msa0573650 | Msa1088150 | 0.881716 | 1.904803e-70 | -8.615850e-47 |
| Msa0575380 | Msa1088150 | 0.836992 | 6.758530e-57 | -8.615850e-47 |
| Msa0576180 | Msa1088150 | 0.839694 | 1.359366e-57 | -8.615850e-47 |
| Msa0930210 | Msa1088150 | 0.841793 | 3.829749e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088150 | MtrunA17_Chr3g0122031 | 97.872 | 282 | 6 | 0 | 1 | 282 | 1 | 282 | 0.0 | 581 |
| Msa1088150 | MtrunA17_Chr3g0122021 | 97.518 | 282 | 7 | 0 | 1 | 282 | 1 | 282 | 0.0 | 578 |
| Msa1088150 | MtrunA17_Chr8g0377841 | 86.989 | 269 | 33 | 2 | 10 | 277 | 14 | 281 | 1.49e-178 | 493 |
| Msa1088150 | MtrunA17_Chr8g0389641 | 81.206 | 282 | 16 | 2 | 1 | 281 | 1 | 246 | 3.95e-167 | 462 |
| Msa1088150 | MtrunA17_Chr4g0072611 | 72.325 | 271 | 69 | 1 | 14 | 278 | 11 | 281 | 3.63e-145 | 408 |
| Msa1088150 | MtrunA17_Chr7g0258911 | 72.593 | 270 | 68 | 1 | 14 | 277 | 10 | 279 | 1.32e-142 | 402 |
| Msa1088150 | MtrunA17_Chr4g0072671 | 72.659 | 267 | 63 | 1 | 21 | 277 | 19 | 285 | 3.91e-140 | 396 |
| Msa1088150 | MtrunA17_Chr4g0072601 | 63.958 | 283 | 96 | 1 | 1 | 277 | 1 | 283 | 8.77e-134 | 380 |
| Msa1088150 | MtrunA17_Chr2g0299061 | 66.906 | 278 | 81 | 1 | 11 | 277 | 9 | 286 | 2.43e-133 | 379 |
| Msa1088150 | MtrunA17_Chr4g0071341 | 67.681 | 263 | 78 | 1 | 22 | 277 | 19 | 281 | 8.69e-132 | 375 |
| Msa1088150 | MtrunA17_Chr4g0072681 | 73.973 | 219 | 46 | 2 | 70 | 277 | 25 | 243 | 3.89e-116 | 333 |
| Msa1088150 | MtrunA17_Chr7g0252631 | 53.082 | 292 | 125 | 3 | 1 | 281 | 1 | 291 | 5.04e-107 | 312 |
| Msa1088150 | MtrunA17_Chr5g0443391 | 52.098 | 286 | 130 | 3 | 1 | 281 | 1 | 284 | 1.02e-106 | 311 |
| Msa1088150 | MtrunA17_Chr7g0252621 | 52.414 | 290 | 126 | 3 | 1 | 279 | 1 | 289 | 2.40e-105 | 308 |
| Msa1088150 | MtrunA17_Chr6g0461731 | 52.055 | 292 | 122 | 4 | 7 | 281 | 24 | 314 | 3.30e-104 | 306 |
| Msa1088150 | MtrunA17_Chr7g0252601 | 51.712 | 292 | 129 | 4 | 1 | 281 | 1 | 291 | 1.12e-103 | 303 |
| Msa1088150 | MtrunA17_Chr6g0461761 | 51.370 | 292 | 130 | 3 | 1 | 281 | 1 | 291 | 2.30e-103 | 303 |
| Msa1088150 | MtrunA17_Chr6g0486581 | 48.936 | 282 | 129 | 3 | 14 | 282 | 9 | 288 | 3.90e-97 | 287 |
| Msa1088150 | MtrunA17_Chr3g0096651 | 50.973 | 257 | 123 | 1 | 26 | 279 | 28 | 284 | 3.07e-96 | 285 |
| Msa1088150 | MtrunA17_Chr4g0023961 | 49.286 | 280 | 122 | 5 | 14 | 277 | 13 | 288 | 6.64e-95 | 281 |
| Msa1088150 | MtrunA17_Chr1g0206681 | 47.810 | 274 | 133 | 2 | 17 | 282 | 25 | 296 | 2.08e-94 | 280 |
| Msa1088150 | MtrunA17_Chr2g0323161 | 48.136 | 295 | 127 | 7 | 1 | 279 | 4 | 288 | 2.18e-94 | 280 |
| Msa1088150 | MtrunA17_Chr4g0054431 | 48.387 | 279 | 135 | 4 | 6 | 277 | 11 | 287 | 9.80e-94 | 278 |
| Msa1088150 | MtrunA17_Chr4g0054451 | 48.000 | 275 | 135 | 3 | 10 | 277 | 16 | 289 | 1.62e-93 | 278 |
| Msa1088150 | MtrunA17_Chr1g0206081 | 44.718 | 284 | 133 | 5 | 11 | 277 | 18 | 294 | 5.03e-84 | 254 |
| Msa1088150 | MtrunA17_Chr8g0390201 | 53.500 | 200 | 83 | 3 | 93 | 282 | 15 | 214 | 5.43e-74 | 225 |
| Msa1088150 | MtrunA17_Chr8g0340001 | 45.339 | 236 | 114 | 4 | 52 | 277 | 1 | 231 | 2.64e-70 | 216 |
| Msa1088150 | MtrunA17_Chr7g0264731 | 41.667 | 264 | 137 | 6 | 25 | 277 | 34 | 291 | 1.30e-63 | 201 |
| Msa1088150 | MtrunA17_Chr2g0327411 | 41.065 | 263 | 136 | 6 | 18 | 268 | 46 | 301 | 1.58e-60 | 194 |
| Msa1088150 | MtrunA17_Chr4g0028221 | 41.667 | 264 | 133 | 7 | 27 | 277 | 49 | 304 | 3.50e-60 | 193 |
| Msa1088150 | MtrunA17_Chr1g0180451 | 40.152 | 264 | 141 | 6 | 25 | 277 | 37 | 294 | 1.56e-59 | 191 |
| Msa1088150 | MtrunA17_Chr2g0303861 | 39.344 | 244 | 136 | 5 | 28 | 263 | 29 | 268 | 1.19e-55 | 181 |
| Msa1088150 | MtrunA17_Chr8g0375981 | 36.398 | 261 | 154 | 5 | 28 | 277 | 31 | 290 | 7.42e-55 | 180 |
| Msa1088150 | MtrunA17_Chr1g0161951 | 37.548 | 261 | 150 | 6 | 28 | 277 | 33 | 291 | 1.44e-52 | 174 |
| Msa1088150 | MtrunA17_Chr5g0410621 | 35.714 | 266 | 153 | 7 | 28 | 277 | 42 | 305 | 1.81e-50 | 169 |
| Msa1088150 | MtrunA17_Chr4g0072641 | 64.167 | 120 | 35 | 1 | 158 | 277 | 37 | 148 | 6.69e-50 | 162 |
| Msa1088150 | MtrunA17_Chr8g0365231 | 34.586 | 266 | 151 | 8 | 32 | 278 | 50 | 311 | 1.07e-49 | 166 |
| Msa1088150 | MtrunA17_Chr7g0235541 | 42.857 | 203 | 100 | 5 | 75 | 265 | 1 | 199 | 2.97e-49 | 162 |
| Msa1088150 | MtrunA17_Chr2g0303721 | 34.524 | 252 | 145 | 6 | 28 | 271 | 30 | 269 | 5.28e-47 | 158 |
| Msa1088150 | MtrunA17_Chr8g0382041 | 34.601 | 263 | 157 | 5 | 28 | 277 | 34 | 294 | 1.57e-44 | 154 |
| Msa1088150 | MtrunA17_Chr4g0072631 | 60.000 | 70 | 27 | 1 | 7 | 75 | 9 | 78 | 1.21e-21 | 87.4 |
| Msa1088150 | MtrunA17_Chr8g0390181 | 46.809 | 94 | 45 | 2 | 5 | 95 | 2 | 93 | 1.30e-18 | 79.0 |
| Msa1088150 | MtrunA17_Chr8g0374231 | 41.667 | 108 | 42 | 5 | 184 | 277 | 1 | 101 | 5.18e-18 | 77.8 |
| Msa1088150 | MtrunA17_Chr8g0350711 | 32.558 | 172 | 108 | 5 | 50 | 219 | 54 | 219 | 1.61e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088150 | AT3G23730.1 | 72.727 | 286 | 67 | 2 | 7 | 281 | 5 | 290 | 3.00e-165 | 460 |
| Msa1088150 | AT4G14130.1 | 73.264 | 288 | 70 | 2 | 1 | 281 | 1 | 288 | 5.49e-164 | 457 |
| Msa1088150 | AT4G25810.1 | 65.455 | 275 | 87 | 1 | 11 | 277 | 9 | 283 | 4.40e-134 | 381 |
| Msa1088150 | AT5G57550.1 | 65.370 | 257 | 86 | 1 | 25 | 278 | 27 | 283 | 7.76e-130 | 370 |
| Msa1088150 | AT4G30270.1 | 65.267 | 262 | 83 | 1 | 16 | 277 | 12 | 265 | 7.84e-130 | 369 |
| Msa1088150 | AT5G57560.1 | 62.816 | 277 | 90 | 2 | 10 | 277 | 9 | 281 | 1.31e-129 | 369 |
| Msa1088150 | AT5G57530.1 | 64.231 | 260 | 85 | 2 | 25 | 277 | 24 | 282 | 3.14e-124 | 356 |
| Msa1088150 | AT5G57540.1 | 63.077 | 260 | 88 | 2 | 25 | 277 | 23 | 281 | 5.38e-123 | 353 |
| Msa1088150 | AT2G18800.1 | 58.571 | 280 | 97 | 2 | 17 | 277 | 17 | 296 | 2.44e-121 | 349 |
| Msa1088150 | AT4G25820.1 | 63.910 | 266 | 88 | 2 | 20 | 278 | 22 | 286 | 4.78e-121 | 348 |
| Msa1088150 | AT5G48070.1 | 57.934 | 271 | 111 | 2 | 10 | 277 | 11 | 281 | 3.17e-118 | 340 |
| Msa1088150 | AT4G30290.1 | 58.672 | 271 | 109 | 2 | 10 | 277 | 6 | 276 | 1.98e-110 | 320 |
| Msa1088150 | AT4G30280.1 | 57.778 | 270 | 111 | 2 | 11 | 277 | 12 | 281 | 2.57e-109 | 318 |
| Msa1088150 | AT1G65310.2 | 60.000 | 260 | 101 | 2 | 21 | 277 | 44 | 303 | 2.65e-108 | 316 |
| Msa1088150 | AT1G65310.1 | 60.000 | 260 | 101 | 2 | 21 | 277 | 22 | 281 | 3.57e-108 | 315 |
| Msa1088150 | AT5G13870.2 | 54.406 | 261 | 111 | 2 | 28 | 281 | 32 | 291 | 7.61e-102 | 299 |
| Msa1088150 | AT5G13870.1 | 54.406 | 261 | 111 | 2 | 28 | 281 | 32 | 291 | 7.61e-102 | 299 |
| Msa1088150 | AT5G13870.3 | 54.406 | 261 | 111 | 2 | 28 | 281 | 32 | 291 | 7.61e-102 | 299 |
| Msa1088150 | AT2G06850.1 | 52.281 | 285 | 122 | 3 | 10 | 281 | 11 | 294 | 6.75e-101 | 297 |
| Msa1088150 | AT4G03210.1 | 48.936 | 282 | 130 | 5 | 10 | 281 | 11 | 288 | 9.50e-97 | 286 |
| Msa1088150 | AT2G14620.1 | 45.833 | 288 | 141 | 2 | 10 | 282 | 12 | 299 | 5.59e-94 | 280 |
| Msa1088150 | AT2G06850.2 | 57.143 | 231 | 91 | 2 | 58 | 281 | 5 | 234 | 6.56e-93 | 275 |
| Msa1088150 | AT4G28850.1 | 48.252 | 286 | 132 | 5 | 10 | 282 | 10 | 292 | 1.38e-92 | 276 |
| Msa1088150 | AT5G65730.1 | 48.921 | 278 | 126 | 6 | 11 | 278 | 20 | 291 | 8.14e-92 | 274 |
| Msa1088150 | AT4G37800.1 | 48.120 | 266 | 126 | 4 | 21 | 277 | 27 | 289 | 6.46e-89 | 266 |
| Msa1088150 | AT4G03210.2 | 52.381 | 231 | 100 | 3 | 60 | 281 | 31 | 260 | 4.21e-87 | 261 |
| Msa1088150 | AT1G11545.1 | 45.357 | 280 | 139 | 4 | 11 | 277 | 21 | 299 | 2.44e-86 | 260 |
| Msa1088150 | AT2G14620.2 | 48.276 | 232 | 112 | 1 | 59 | 282 | 18 | 249 | 1.03e-82 | 249 |
| Msa1088150 | AT2G14620.3 | 48.879 | 223 | 106 | 1 | 68 | 282 | 16 | 238 | 1.29e-80 | 243 |
| Msa1088150 | AT4G13090.1 | 40.893 | 291 | 151 | 4 | 7 | 278 | 1 | 289 | 4.20e-75 | 231 |
| Msa1088150 | AT3G25050.1 | 41.699 | 259 | 138 | 3 | 28 | 277 | 35 | 289 | 9.94e-75 | 230 |
| Msa1088150 | AT4G13080.1 | 45.038 | 262 | 125 | 7 | 28 | 278 | 39 | 292 | 3.30e-72 | 224 |
| Msa1088150 | AT2G36870.1 | 42.857 | 266 | 135 | 6 | 25 | 279 | 40 | 299 | 1.14e-63 | 202 |
| Msa1088150 | AT3G44990.1 | 40.221 | 271 | 143 | 8 | 18 | 277 | 31 | 293 | 1.03e-58 | 189 |
| Msa1088150 | AT1G14720.1 | 34.783 | 299 | 170 | 7 | 7 | 281 | 4 | 301 | 2.64e-53 | 176 |
| Msa1088150 | AT1G32170.1 | 34.130 | 293 | 164 | 8 | 8 | 277 | 7 | 293 | 8.59e-53 | 176 |
| Msa1088150 | AT1G10550.1 | 34.926 | 272 | 142 | 8 | 32 | 277 | 47 | 309 | 3.24e-52 | 173 |
| Msa1088150 | AT2G01850.1 | 31.773 | 299 | 179 | 6 | 7 | 281 | 4 | 301 | 1.48e-50 | 169 |
| Msa1088150 | AT4G18990.1 | 35.433 | 254 | 135 | 7 | 50 | 277 | 62 | 312 | 4.12e-44 | 153 |
| Msa1088150 | AT3G48580.1 | 33.603 | 247 | 146 | 7 | 35 | 277 | 41 | 273 | 3.85e-43 | 149 |
| Msa1088150 | AT4G18990.2 | 34.649 | 228 | 116 | 8 | 77 | 277 | 17 | 238 | 1.19e-36 | 132 |
| Msa1088150 | AT3G48580.3 | 31.696 | 224 | 136 | 6 | 58 | 277 | 4 | 214 | 2.14e-36 | 129 |
| Msa1088150 | AT2G36870.2 | 43.262 | 141 | 70 | 3 | 25 | 157 | 40 | 178 | 2.55e-30 | 112 |
| Msa1088150 | AT3G48580.2 | 29.555 | 247 | 136 | 8 | 35 | 277 | 41 | 253 | 9.47e-28 | 108 |
Find 78 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTCATTGGTTGGTTCTT+TGG | 0.220550 | 7_3:+1165233 | None:intergenic |
| TTCTCATTGGTTGGTTCTTT+GGG | 0.221209 | 7_3:+1165234 | None:intergenic |
| TCGAAGAAAGAGTATTTATT+TGG | 0.223648 | 7_3:-1165866 | Msa1088150:CDS |
| GCATTCTTGAAGATCCTTAT+AGG | 0.241455 | 7_3:+1165278 | None:intergenic |
| ATTAATATGGCTTCTTCTAT+TGG | 0.241934 | 7_3:-1166061 | Msa1088150:exon |
| AGAAGCCATATTAATTGATT+TGG | 0.245541 | 7_3:+1166069 | None:intergenic |
| TTTGTCCAAATCAATTAATA+TGG | 0.309505 | 7_3:-1166074 | Msa1088150:exon |
| TATATATATGTGTGTGTGTT+AGG | 0.310634 | 7_3:+1166176 | None:intergenic |
| CATTCTTGAAGATCCTTATA+GGG | 0.350905 | 7_3:+1165279 | None:intergenic |
| TAGTTGATAACATCCCTATA+AGG | 0.361735 | 7_3:-1165292 | Msa1088150:CDS |
| GTCTCTGGAACGCTGATGAT+TGG | 0.365899 | 7_3:-1165202 | Msa1088150:CDS |
| TATTACTTACATAATGTGTT+GGG | 0.366572 | 7_3:+1165397 | None:intergenic |
| TTGCGGTAGTAAGCTGTAAA+TGG | 0.368145 | 7_3:+1165137 | None:intergenic |
| CAATATAACGAAGACTGATA+TGG | 0.371359 | 7_3:+1164755 | None:intergenic |
| GAGAACAACAATTCTACCTT+TGG | 0.383624 | 7_3:-1165466 | Msa1088150:CDS |
| ACCAAGACTTTGATCTAACT+TGG | 0.385781 | 7_3:-1165970 | Msa1088150:CDS |
| ATTGGTTGGTTCTTTGGGAA+TGG | 0.395735 | 7_3:+1165239 | None:intergenic |
| ATGCAACTCAAACTTGTTGC+TGG | 0.403109 | 7_3:-1165833 | Msa1088150:CDS |
| AGACTTGAATAGATTCTCAT+TGG | 0.409589 | 7_3:+1165221 | None:intergenic |
| TAGTCTGAATAGATACGAAC+AGG | 0.412845 | 7_3:+1164716 | None:intergenic |
| ATAAATACTCTTTCTTCGAT+TGG | 0.413180 | 7_3:+1165870 | None:intergenic |
| AGCAATGAACTTGATGCTTA+TGG | 0.415779 | 7_3:-1165053 | Msa1088150:CDS |
| CTTGTTGCTGGAAATTCTGC+TGG | 0.421705 | 7_3:-1165821 | Msa1088150:CDS |
| TTCAAGAATGCTGAATCAAT+TGG | 0.430099 | 7_3:-1165266 | Msa1088150:CDS |
| TGAGAATCTATTCAAGTCTC+TGG | 0.437244 | 7_3:-1165217 | Msa1088150:CDS |
| AGAGTAAGTGTGGAAGTTCT+TGG | 0.438651 | 7_3:+1165433 | None:intergenic |
| CTAGACAAAACCTCGGGCTC+TGG | 0.447506 | 7_3:-1165896 | Msa1088150:CDS |
| TCCACACTTACTCTATCATC+TGG | 0.453939 | 7_3:-1165424 | Msa1088150:CDS |
| GTAAGCTGTAAATGGTGCTT+TGG | 0.464723 | 7_3:+1165145 | None:intergenic |
| TTGAATAGATTCTCATTGGT+TGG | 0.466553 | 7_3:+1165225 | None:intergenic |
| ATATTACTTACATAATGTGT+TGG | 0.469145 | 7_3:+1165396 | None:intergenic |
| TCTCTGGAACGCTGATGATT+GGG | 0.473167 | 7_3:-1165201 | Msa1088150:CDS |
| AGTCATGATAATTAGCTCCT+TGG | 0.482305 | 7_3:-1166017 | Msa1088150:CDS |
| TCATTGATCTCTCAGAACCT+TGG | 0.486786 | 7_3:+1164930 | None:intergenic |
| CTTGGACGCTTGCACTCTGC+AGG | 0.489897 | 7_3:+1164948 | None:intergenic |
| AAGTGTGGAAGTTCTTGGTT+GGG | 0.498153 | 7_3:+1165438 | None:intergenic |
| CTGCAGAGTGCAAGCGTCCA+AGG | 0.505272 | 7_3:-1164947 | Msa1088150:CDS |
| TTGGGCTACAAGAGGTGGTT+TGG | 0.508778 | 7_3:-1165183 | Msa1088150:CDS |
| CCAAGACTTTGATCTAACTT+GGG | 0.509119 | 7_3:-1165969 | Msa1088150:CDS |
| CACCGTGCTAAGATATTCAA+TGG | 0.519496 | 7_3:-1165941 | Msa1088150:CDS |
| CCCAAGTTAGATCAAAGTCT+TGG | 0.522663 | 7_3:+1165969 | None:intergenic |
| AAATCTATTTCGTCATGAGT+TGG | 0.533351 | 7_3:+1165563 | None:intergenic |
| ACGTTCGTATGAAGAATGTA+AGG | 0.534219 | 7_3:+1165512 | None:intergenic |
| GGCATGAACAATATGCTGAT+TGG | 0.535335 | 7_3:-1166040 | Msa1088150:CDS |
| GAGTTCTTGGGAAATGTTAG+CGG | 0.540045 | 7_3:-1165539 | Msa1088150:CDS |
| ATATATATGTGTGTGTGTTA+GGG | 0.541407 | 7_3:+1166177 | None:intergenic |
| AGAACCGTTATAAAATAAGA+TGG | 0.542218 | 7_3:+1164890 | None:intergenic |
| ATGGTAGAAGAAGATTGAGA+TGG | 0.542822 | 7_3:-1165034 | Msa1088150:CDS |
| ACTCTGCAGGAATACCTTGT+GGG | 0.543120 | 7_3:+1164961 | None:intergenic |
| TAAGTGTGGAAGTTCTTGGT+TGG | 0.544799 | 7_3:+1165437 | None:intergenic |
| GTGGTTTGGTGAAAACTGAT+TGG | 0.548484 | 7_3:-1165169 | Msa1088150:CDS |
| TGATGTAGAATTAGAAAAGA+GGG | 0.554482 | 7_3:+1166147 | None:intergenic |
| GTGATGTAGAATTAGAAAAG+AGG | 0.554707 | 7_3:+1166146 | None:intergenic |
| TGCAGAATCAGAGAAGGAAG+TGG | 0.555907 | 7_3:+1165082 | None:intergenic |
| ACTCAGTAGCTTTGAAATTG+CGG | 0.559212 | 7_3:+1165120 | None:intergenic |
| CACTCTGCAGGAATACCTTG+TGG | 0.561466 | 7_3:+1164960 | None:intergenic |
| ATTACTTACATAATGTGTTG+GGG | 0.569004 | 7_3:+1165398 | None:intergenic |
| CGATTGGAAGCCAGAGCCCG+AGG | 0.573236 | 7_3:+1165886 | None:intergenic |
| AACGAAGACTGATATGGAAG+TGG | 0.580077 | 7_3:+1164761 | None:intergenic |
| GATGATTGGGCTACAAGAGG+TGG | 0.583367 | 7_3:-1165188 | Msa1088150:CDS |
| TCCAGATGATAGAGTAAGTG+TGG | 0.584360 | 7_3:+1165423 | None:intergenic |
| ACTGATATGGAAGTGGTACA+AGG | 0.585403 | 7_3:+1164768 | None:intergenic |
| AGCAGAACATGTAGCTACCA+AGG | 0.586171 | 7_3:+1166000 | None:intergenic |
| TGGTAGAAGAAGATTGAGAT+GGG | 0.586469 | 7_3:-1165033 | Msa1088150:CDS |
| TCTTGGTTGGGTCAAACCAA+AGG | 0.586504 | 7_3:+1165450 | None:intergenic |
| CTTTCTCTAGACAAAACCTC+GGG | 0.590397 | 7_3:-1165902 | Msa1088150:CDS |
| CTGCATTGCAGAATCAGAGA+AGG | 0.608965 | 7_3:+1165076 | None:intergenic |
| TCTTTCTCTAGACAAAACCT+CGG | 0.610000 | 7_3:-1165903 | Msa1088150:CDS |
| GAAGGAAGTGGAAGAGACAG+AGG | 0.615542 | 7_3:+1165094 | None:intergenic |
| CAAGACTTTGATCTAACTTG+GGG | 0.623881 | 7_3:-1165968 | Msa1088150:CDS |
| ATCATAATAAATTAAAACAG+TGG | 0.628762 | 7_3:+1164846 | None:intergenic |
| CACCATTGAATATCTTAGCA+CGG | 0.635606 | 7_3:+1165939 | None:intergenic |
| GCTGATGATTGGGCTACAAG+AGG | 0.647339 | 7_3:-1165191 | Msa1088150:CDS |
| GATCTTAAGCGATTCCCACA+AGG | 0.690977 | 7_3:-1164975 | Msa1088150:CDS |
| CGTGCTAAGATATTCAATGG+TGG | 0.692895 | 7_3:-1165938 | Msa1088150:CDS |
| ATGGTGCAGTTGTCATCACA+AGG | 0.694897 | 7_3:-1165587 | Msa1088150:intron |
| AGTCTGAATAGATACGAACA+GGG | 0.745407 | 7_3:+1164717 | None:intergenic |
| CATTGAATATCTTAGCACGG+TGG | 0.785980 | 7_3:+1165942 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAAATAAAGTTACTTT+TGG | + | chr7_3:1165174-1165193 | None:intergenic | 10.0% |
| !!! | ATTTTAAATAAAGTTACTTT+TGG | + | chr7_3:1165174-1165193 | None:intergenic | 10.0% |
| !! | ATCATAATAAATTAAAACAG+TGG | + | chr7_3:1166039-1166058 | None:intergenic | 15.0% |
| !!! | TATATTCCTCTATATTTTTT+TGG | - | chr7_3:1166071-1166090 | Msa1088150:exon | 15.0% |
| !! | ATCATAATAAATTAAAACAG+TGG | + | chr7_3:1166039-1166058 | None:intergenic | 15.0% |
| !!! | TATATTCCTCTATATTTTTT+TGG | - | chr7_3:1166071-1166090 | Msa1088150:exon | 15.0% |
| !! | TTTGTCCAAATCAATTAATA+TGG | - | chr7_3:1164808-1164827 | Msa1088150:three_prime_UTR | 20.0% |
| !! | AATATATGGTATACTATATG+AGG | + | chr7_3:1165140-1165159 | None:intergenic | 20.0% |
| !! | TGGAAATGAATTAGAATATA+TGG | + | chr7_3:1165154-1165173 | None:intergenic | 20.0% |
| !!! | TTTTGTATTGTGGTAAATAA+CGG | - | chr7_3:1165258-1165277 | Msa1088150:CDS | 20.0% |
| !! | TATTACTTACATAATGTGTT+GGG | + | chr7_3:1165488-1165507 | None:intergenic | 20.0% |
| !! | ATATTACTTACATAATGTGT+TGG | + | chr7_3:1165489-1165508 | None:intergenic | 20.0% |
| !!! | ATAGCCATCTTATTTTATAA+CGG | - | chr7_3:1165988-1166007 | Msa1088150:CDS | 20.0% |
| !! | TTTGTCCAAATCAATTAATA+TGG | - | chr7_3:1164808-1164827 | Msa1088150:three_prime_UTR | 20.0% |
| !! | AATATATGGTATACTATATG+AGG | + | chr7_3:1165140-1165159 | None:intergenic | 20.0% |
| !! | TGGAAATGAATTAGAATATA+TGG | + | chr7_3:1165154-1165173 | None:intergenic | 20.0% |
| !!! | TTTTGTATTGTGGTAAATAA+CGG | - | chr7_3:1165258-1165277 | Msa1088150:CDS | 20.0% |
| !! | TATTACTTACATAATGTGTT+GGG | + | chr7_3:1165488-1165507 | None:intergenic | 20.0% |
| !! | ATATTACTTACATAATGTGT+TGG | + | chr7_3:1165489-1165508 | None:intergenic | 20.0% |
| !!! | ATAGCCATCTTATTTTATAA+CGG | - | chr7_3:1165988-1166007 | Msa1088150:CDS | 20.0% |
| ! | TGATGTAGAATTAGAAAAGA+GGG | + | chr7_3:1164738-1164757 | None:intergenic | 25.0% |
| ! | AGAAGCCATATTAATTGATT+TGG | + | chr7_3:1164816-1164835 | None:intergenic | 25.0% |
| ! | ATTAATATGGCTTCTTCTAT+TGG | - | chr7_3:1164821-1164840 | Msa1088150:three_prime_UTR | 25.0% |
| ! | ATAAATACTCTTTCTTCGAT+TGG | + | chr7_3:1165015-1165034 | None:intergenic | 25.0% |
| !!! | TCGAAGAAAGAGTATTTATT+TGG | - | chr7_3:1165016-1165035 | Msa1088150:CDS | 25.0% |
| !!! | GAAATAGATTTTGAGTTCTT+GGG | - | chr7_3:1165331-1165350 | Msa1088150:intron | 25.0% |
| ! | ATTACTTACATAATGTGTTG+GGG | + | chr7_3:1165487-1165506 | None:intergenic | 25.0% |
| ! | AGAACCGTTATAAAATAAGA+TGG | + | chr7_3:1165995-1166014 | None:intergenic | 25.0% |
| !!! | ATTCCTCTATATTTTTTTGG+TGG | - | chr7_3:1166074-1166093 | Msa1088150:exon | 25.0% |
| ! | TAACCACCAAAAAAATATAG+AGG | + | chr7_3:1166080-1166099 | None:intergenic | 25.0% |
| ! | TGATGTAGAATTAGAAAAGA+GGG | + | chr7_3:1164738-1164757 | None:intergenic | 25.0% |
| ! | AGAAGCCATATTAATTGATT+TGG | + | chr7_3:1164816-1164835 | None:intergenic | 25.0% |
| ! | ATTAATATGGCTTCTTCTAT+TGG | - | chr7_3:1164821-1164840 | Msa1088150:three_prime_UTR | 25.0% |
| ! | ATAAATACTCTTTCTTCGAT+TGG | + | chr7_3:1165015-1165034 | None:intergenic | 25.0% |
| !!! | TCGAAGAAAGAGTATTTATT+TGG | - | chr7_3:1165016-1165035 | Msa1088150:CDS | 25.0% |
| !!! | GAAATAGATTTTGAGTTCTT+GGG | - | chr7_3:1165331-1165350 | Msa1088150:intron | 25.0% |
| ! | ATTACTTACATAATGTGTTG+GGG | + | chr7_3:1165487-1165506 | None:intergenic | 25.0% |
| ! | AGAACCGTTATAAAATAAGA+TGG | + | chr7_3:1165995-1166014 | None:intergenic | 25.0% |
| !!! | ATTCCTCTATATTTTTTTGG+TGG | - | chr7_3:1166074-1166093 | Msa1088150:exon | 25.0% |
| ! | TAACCACCAAAAAAATATAG+AGG | + | chr7_3:1166080-1166099 | None:intergenic | 25.0% |
| GTGATGTAGAATTAGAAAAG+AGG | + | chr7_3:1164739-1164758 | None:intergenic | 30.0% | |
| CTATATGAGGAAGTAAAGAA+AGG | + | chr7_3:1165127-1165146 | None:intergenic | 30.0% | |
| AACGGTACTATATGCATATA+TGG | - | chr7_3:1165276-1165295 | Msa1088150:CDS | 30.0% | |
| AAATCTATTTCGTCATGAGT+TGG | + | chr7_3:1165322-1165341 | None:intergenic | 30.0% | |
| !!! | CGAAATAGATTTTGAGTTCT+TGG | - | chr7_3:1165330-1165349 | Msa1088150:intron | 30.0% |
| !! | TAGTTGATAACATCCCTATA+AGG | - | chr7_3:1165590-1165609 | Msa1088150:intron | 30.0% |
| CATTCTTGAAGATCCTTATA+GGG | + | chr7_3:1165606-1165625 | None:intergenic | 30.0% | |
| TTCAAGAATGCTGAATCAAT+TGG | - | chr7_3:1165616-1165635 | Msa1088150:intron | 30.0% | |
| TTGAATAGATTCTCATTGGT+TGG | + | chr7_3:1165660-1165679 | None:intergenic | 30.0% | |
| AGACTTGAATAGATTCTCAT+TGG | + | chr7_3:1165664-1165683 | None:intergenic | 30.0% | |
| CAATATAACGAAGACTGATA+TGG | + | chr7_3:1166130-1166149 | None:intergenic | 30.0% | |
| GTGATGTAGAATTAGAAAAG+AGG | + | chr7_3:1164739-1164758 | None:intergenic | 30.0% | |
| CTATATGAGGAAGTAAAGAA+AGG | + | chr7_3:1165127-1165146 | None:intergenic | 30.0% | |
| AACGGTACTATATGCATATA+TGG | - | chr7_3:1165276-1165295 | Msa1088150:CDS | 30.0% | |
| AAATCTATTTCGTCATGAGT+TGG | + | chr7_3:1165322-1165341 | None:intergenic | 30.0% | |
| !!! | CGAAATAGATTTTGAGTTCT+TGG | - | chr7_3:1165330-1165349 | Msa1088150:intron | 30.0% |
| !! | TAGTTGATAACATCCCTATA+AGG | - | chr7_3:1165590-1165609 | Msa1088150:intron | 30.0% |
| CATTCTTGAAGATCCTTATA+GGG | + | chr7_3:1165606-1165625 | None:intergenic | 30.0% | |
| TTCAAGAATGCTGAATCAAT+TGG | - | chr7_3:1165616-1165635 | Msa1088150:intron | 30.0% | |
| TTGAATAGATTCTCATTGGT+TGG | + | chr7_3:1165660-1165679 | None:intergenic | 30.0% | |
| AGACTTGAATAGATTCTCAT+TGG | + | chr7_3:1165664-1165683 | None:intergenic | 30.0% | |
| CAATATAACGAAGACTGATA+TGG | + | chr7_3:1166130-1166149 | None:intergenic | 30.0% | |
| AGTCATGATAATTAGCTCCT+TGG | - | chr7_3:1164865-1164884 | Msa1088150:three_prime_UTR | 35.0% | |
| ACCAAGACTTTGATCTAACT+TGG | - | chr7_3:1164912-1164931 | Msa1088150:three_prime_UTR | 35.0% | |
| CCAAGACTTTGATCTAACTT+GGG | - | chr7_3:1164913-1164932 | Msa1088150:three_prime_UTR | 35.0% | |
| CAAGACTTTGATCTAACTTG+GGG | - | chr7_3:1164914-1164933 | Msa1088150:three_prime_UTR | 35.0% | |
| CACCATTGAATATCTTAGCA+CGG | + | chr7_3:1164946-1164965 | None:intergenic | 35.0% | |
| TCTTTCTCTAGACAAAACCT+CGG | - | chr7_3:1164979-1164998 | Msa1088150:CDS | 35.0% | |
| !! | TTGCTGCTTCTTTTGTATTG+TGG | - | chr7_3:1165248-1165267 | Msa1088150:CDS | 35.0% |
| ACGTTCGTATGAAGAATGTA+AGG | + | chr7_3:1165373-1165392 | None:intergenic | 35.0% | |
| GAGAACAACAATTCTACCTT+TGG | - | chr7_3:1165416-1165435 | Msa1088150:CDS | 35.0% | |
| GCATTCTTGAAGATCCTTAT+AGG | + | chr7_3:1165607-1165626 | None:intergenic | 35.0% | |
| ! | TTCTCATTGGTTGGTTCTTT+GGG | + | chr7_3:1165651-1165670 | None:intergenic | 35.0% |
| ! | ATTCTCATTGGTTGGTTCTT+TGG | + | chr7_3:1165652-1165671 | None:intergenic | 35.0% |
| TGAGAATCTATTCAAGTCTC+TGG | - | chr7_3:1165665-1165684 | Msa1088150:intron | 35.0% | |
| !! | ACTCAGTAGCTTTGAAATTG+CGG | + | chr7_3:1165765-1165784 | None:intergenic | 35.0% |
| AGCAATGAACTTGATGCTTA+TGG | - | chr7_3:1165829-1165848 | Msa1088150:CDS | 35.0% | |
| ATGGTAGAAGAAGATTGAGA+TGG | - | chr7_3:1165848-1165867 | Msa1088150:CDS | 35.0% | |
| TGGTAGAAGAAGATTGAGAT+GGG | - | chr7_3:1165849-1165868 | Msa1088150:CDS | 35.0% | |
| AGTCTGAATAGATACGAACA+GGG | + | chr7_3:1166168-1166187 | None:intergenic | 35.0% | |
| TAGTCTGAATAGATACGAAC+AGG | + | chr7_3:1166169-1166188 | None:intergenic | 35.0% | |
| AGTCATGATAATTAGCTCCT+TGG | - | chr7_3:1164865-1164884 | Msa1088150:three_prime_UTR | 35.0% | |
| ACCAAGACTTTGATCTAACT+TGG | - | chr7_3:1164912-1164931 | Msa1088150:three_prime_UTR | 35.0% | |
| CCAAGACTTTGATCTAACTT+GGG | - | chr7_3:1164913-1164932 | Msa1088150:three_prime_UTR | 35.0% | |
| CAAGACTTTGATCTAACTTG+GGG | - | chr7_3:1164914-1164933 | Msa1088150:three_prime_UTR | 35.0% | |
| CACCATTGAATATCTTAGCA+CGG | + | chr7_3:1164946-1164965 | None:intergenic | 35.0% | |
| TCTTTCTCTAGACAAAACCT+CGG | - | chr7_3:1164979-1164998 | Msa1088150:CDS | 35.0% | |
| !! | TTGCTGCTTCTTTTGTATTG+TGG | - | chr7_3:1165248-1165267 | Msa1088150:CDS | 35.0% |
| ACGTTCGTATGAAGAATGTA+AGG | + | chr7_3:1165373-1165392 | None:intergenic | 35.0% | |
| GAGAACAACAATTCTACCTT+TGG | - | chr7_3:1165416-1165435 | Msa1088150:CDS | 35.0% | |
| GCATTCTTGAAGATCCTTAT+AGG | + | chr7_3:1165607-1165626 | None:intergenic | 35.0% | |
| ! | TTCTCATTGGTTGGTTCTTT+GGG | + | chr7_3:1165651-1165670 | None:intergenic | 35.0% |
| ! | ATTCTCATTGGTTGGTTCTT+TGG | + | chr7_3:1165652-1165671 | None:intergenic | 35.0% |
| TGAGAATCTATTCAAGTCTC+TGG | - | chr7_3:1165665-1165684 | Msa1088150:intron | 35.0% | |
| !! | ACTCAGTAGCTTTGAAATTG+CGG | + | chr7_3:1165765-1165784 | None:intergenic | 35.0% |
| AGCAATGAACTTGATGCTTA+TGG | - | chr7_3:1165829-1165848 | Msa1088150:CDS | 35.0% | |
| ATGGTAGAAGAAGATTGAGA+TGG | - | chr7_3:1165848-1165867 | Msa1088150:CDS | 35.0% | |
| TGGTAGAAGAAGATTGAGAT+GGG | - | chr7_3:1165849-1165868 | Msa1088150:CDS | 35.0% | |
| AGTCTGAATAGATACGAACA+GGG | + | chr7_3:1166168-1166187 | None:intergenic | 35.0% | |
| TAGTCTGAATAGATACGAAC+AGG | + | chr7_3:1166169-1166188 | None:intergenic | 35.0% | |
| GGCATGAACAATATGCTGAT+TGG | - | chr7_3:1164842-1164861 | Msa1088150:three_prime_UTR | 40.0% | |
| CCCAAGTTAGATCAAAGTCT+TGG | + | chr7_3:1164916-1164935 | None:intergenic | 40.0% | |
| CATTGAATATCTTAGCACGG+TGG | + | chr7_3:1164943-1164962 | None:intergenic | 40.0% | |
| CACCGTGCTAAGATATTCAA+TGG | - | chr7_3:1164941-1164960 | Msa1088150:CDS | 40.0% | |
| CGTGCTAAGATATTCAATGG+TGG | - | chr7_3:1164944-1164963 | Msa1088150:CDS | 40.0% | |
| CTTTCTCTAGACAAAACCTC+GGG | - | chr7_3:1164980-1164999 | Msa1088150:CDS | 40.0% | |
| !! | ATGCAACTCAAACTTGTTGC+TGG | - | chr7_3:1165049-1165068 | Msa1088150:CDS | 40.0% |
| GAGTTCTTGGGAAATGTTAG+CGG | - | chr7_3:1165343-1165362 | Msa1088150:intron | 40.0% | |
| ! | CATACGAACGTGTTTTCTCA+AGG | - | chr7_3:1165382-1165401 | Msa1088150:intron | 40.0% |
| ! | AACGTGTTTTCTCAAGGCAA+AGG | - | chr7_3:1165388-1165407 | Msa1088150:intron | 40.0% |
| AAGTGTGGAAGTTCTTGGTT+GGG | + | chr7_3:1165447-1165466 | None:intergenic | 40.0% | |
| TAAGTGTGGAAGTTCTTGGT+TGG | + | chr7_3:1165448-1165467 | None:intergenic | 40.0% | |
| AGAGTAAGTGTGGAAGTTCT+TGG | + | chr7_3:1165452-1165471 | None:intergenic | 40.0% | |
| TCCACACTTACTCTATCATC+TGG | - | chr7_3:1165458-1165477 | Msa1088150:CDS | 40.0% | |
| TCCAGATGATAGAGTAAGTG+TGG | + | chr7_3:1165462-1165481 | None:intergenic | 40.0% | |
| ! | ATTGGTTGGTTCTTTGGGAA+TGG | + | chr7_3:1165646-1165665 | None:intergenic | 40.0% |
| !! | GTGGTTTGGTGAAAACTGAT+TGG | - | chr7_3:1165713-1165732 | Msa1088150:intron | 40.0% |
| GTAAGCTGTAAATGGTGCTT+TGG | + | chr7_3:1165740-1165759 | None:intergenic | 40.0% | |
| TTGCGGTAGTAAGCTGTAAA+TGG | + | chr7_3:1165748-1165767 | None:intergenic | 40.0% | |
| TCATTGATCTCTCAGAACCT+TGG | + | chr7_3:1165955-1165974 | None:intergenic | 40.0% | |
| ACTGATATGGAAGTGGTACA+AGG | + | chr7_3:1166117-1166136 | None:intergenic | 40.0% | |
| AACGAAGACTGATATGGAAG+TGG | + | chr7_3:1166124-1166143 | None:intergenic | 40.0% | |
| GGCATGAACAATATGCTGAT+TGG | - | chr7_3:1164842-1164861 | Msa1088150:three_prime_UTR | 40.0% | |
| CCCAAGTTAGATCAAAGTCT+TGG | + | chr7_3:1164916-1164935 | None:intergenic | 40.0% | |
| CATTGAATATCTTAGCACGG+TGG | + | chr7_3:1164943-1164962 | None:intergenic | 40.0% | |
| CACCGTGCTAAGATATTCAA+TGG | - | chr7_3:1164941-1164960 | Msa1088150:CDS | 40.0% | |
| CGTGCTAAGATATTCAATGG+TGG | - | chr7_3:1164944-1164963 | Msa1088150:CDS | 40.0% | |
| CTTTCTCTAGACAAAACCTC+GGG | - | chr7_3:1164980-1164999 | Msa1088150:CDS | 40.0% | |
| !! | ATGCAACTCAAACTTGTTGC+TGG | - | chr7_3:1165049-1165068 | Msa1088150:CDS | 40.0% |
| GAGTTCTTGGGAAATGTTAG+CGG | - | chr7_3:1165343-1165362 | Msa1088150:intron | 40.0% | |
| ! | CATACGAACGTGTTTTCTCA+AGG | - | chr7_3:1165382-1165401 | Msa1088150:intron | 40.0% |
| ! | AACGTGTTTTCTCAAGGCAA+AGG | - | chr7_3:1165388-1165407 | Msa1088150:intron | 40.0% |
| AAGTGTGGAAGTTCTTGGTT+GGG | + | chr7_3:1165447-1165466 | None:intergenic | 40.0% | |
| TAAGTGTGGAAGTTCTTGGT+TGG | + | chr7_3:1165448-1165467 | None:intergenic | 40.0% | |
| AGAGTAAGTGTGGAAGTTCT+TGG | + | chr7_3:1165452-1165471 | None:intergenic | 40.0% | |
| TCCACACTTACTCTATCATC+TGG | - | chr7_3:1165458-1165477 | Msa1088150:CDS | 40.0% | |
| TCCAGATGATAGAGTAAGTG+TGG | + | chr7_3:1165462-1165481 | None:intergenic | 40.0% | |
| ! | ATTGGTTGGTTCTTTGGGAA+TGG | + | chr7_3:1165646-1165665 | None:intergenic | 40.0% |
| !! | GTGGTTTGGTGAAAACTGAT+TGG | - | chr7_3:1165713-1165732 | Msa1088150:intron | 40.0% |
| GTAAGCTGTAAATGGTGCTT+TGG | + | chr7_3:1165740-1165759 | None:intergenic | 40.0% | |
| TTGCGGTAGTAAGCTGTAAA+TGG | + | chr7_3:1165748-1165767 | None:intergenic | 40.0% | |
| TCATTGATCTCTCAGAACCT+TGG | + | chr7_3:1165955-1165974 | None:intergenic | 40.0% | |
| ACTGATATGGAAGTGGTACA+AGG | + | chr7_3:1166117-1166136 | None:intergenic | 40.0% | |
| AACGAAGACTGATATGGAAG+TGG | + | chr7_3:1166124-1166143 | None:intergenic | 40.0% | |
| AGCAGAACATGTAGCTACCA+AGG | + | chr7_3:1164885-1164904 | None:intergenic | 45.0% | |
| CTTGTTGCTGGAAATTCTGC+TGG | - | chr7_3:1165061-1165080 | Msa1088150:CDS | 45.0% | |
| ATGGTGCAGTTGTCATCACA+AGG | - | chr7_3:1165295-1165314 | Msa1088150:CDS | 45.0% | |
| TCTTGGTTGGGTCAAACCAA+AGG | + | chr7_3:1165435-1165454 | None:intergenic | 45.0% | |
| !! | TCTCTGGAACGCTGATGATT+GGG | - | chr7_3:1165681-1165700 | Msa1088150:intron | 45.0% |
| TGCAGAATCAGAGAAGGAAG+TGG | + | chr7_3:1165803-1165822 | None:intergenic | 45.0% | |
| CTGCATTGCAGAATCAGAGA+AGG | + | chr7_3:1165809-1165828 | None:intergenic | 45.0% | |
| GATCTTAAGCGATTCCCACA+AGG | - | chr7_3:1165907-1165926 | Msa1088150:CDS | 45.0% | |
| ACTCTGCAGGAATACCTTGT+GGG | + | chr7_3:1165924-1165943 | None:intergenic | 45.0% | |
| AGCAGAACATGTAGCTACCA+AGG | + | chr7_3:1164885-1164904 | None:intergenic | 45.0% | |
| CTTGTTGCTGGAAATTCTGC+TGG | - | chr7_3:1165061-1165080 | Msa1088150:CDS | 45.0% | |
| ATGGTGCAGTTGTCATCACA+AGG | - | chr7_3:1165295-1165314 | Msa1088150:CDS | 45.0% | |
| TCTTGGTTGGGTCAAACCAA+AGG | + | chr7_3:1165435-1165454 | None:intergenic | 45.0% | |
| !! | TCTCTGGAACGCTGATGATT+GGG | - | chr7_3:1165681-1165700 | Msa1088150:intron | 45.0% |
| TGCAGAATCAGAGAAGGAAG+TGG | + | chr7_3:1165803-1165822 | None:intergenic | 45.0% | |
| CTGCATTGCAGAATCAGAGA+AGG | + | chr7_3:1165809-1165828 | None:intergenic | 45.0% | |
| GATCTTAAGCGATTCCCACA+AGG | - | chr7_3:1165907-1165926 | Msa1088150:CDS | 45.0% | |
| ACTCTGCAGGAATACCTTGT+GGG | + | chr7_3:1165924-1165943 | None:intergenic | 45.0% | |
| !! | GTCTCTGGAACGCTGATGAT+TGG | - | chr7_3:1165680-1165699 | Msa1088150:intron | 50.0% |
| GCTGATGATTGGGCTACAAG+AGG | - | chr7_3:1165691-1165710 | Msa1088150:intron | 50.0% | |
| GATGATTGGGCTACAAGAGG+TGG | - | chr7_3:1165694-1165713 | Msa1088150:intron | 50.0% | |
| TTGGGCTACAAGAGGTGGTT+TGG | - | chr7_3:1165699-1165718 | Msa1088150:intron | 50.0% | |
| GAAGGAAGTGGAAGAGACAG+AGG | + | chr7_3:1165791-1165810 | None:intergenic | 50.0% | |
| CACTCTGCAGGAATACCTTG+TGG | + | chr7_3:1165925-1165944 | None:intergenic | 50.0% | |
| !! | GTCTCTGGAACGCTGATGAT+TGG | - | chr7_3:1165680-1165699 | Msa1088150:intron | 50.0% |
| GCTGATGATTGGGCTACAAG+AGG | - | chr7_3:1165691-1165710 | Msa1088150:intron | 50.0% | |
| GATGATTGGGCTACAAGAGG+TGG | - | chr7_3:1165694-1165713 | Msa1088150:intron | 50.0% | |
| TTGGGCTACAAGAGGTGGTT+TGG | - | chr7_3:1165699-1165718 | Msa1088150:intron | 50.0% | |
| GAAGGAAGTGGAAGAGACAG+AGG | + | chr7_3:1165791-1165810 | None:intergenic | 50.0% | |
| CACTCTGCAGGAATACCTTG+TGG | + | chr7_3:1165925-1165944 | None:intergenic | 50.0% | |
| CTAGACAAAACCTCGGGCTC+TGG | - | chr7_3:1164986-1165005 | Msa1088150:CDS | 55.0% | |
| CTAGACAAAACCTCGGGCTC+TGG | - | chr7_3:1164986-1165005 | Msa1088150:CDS | 55.0% | |
| CTTGGACGCTTGCACTCTGC+AGG | + | chr7_3:1165937-1165956 | None:intergenic | 60.0% | |
| CTGCAGAGTGCAAGCGTCCA+AGG | - | chr7_3:1165935-1165954 | Msa1088150:CDS | 60.0% | |
| CTTGGACGCTTGCACTCTGC+AGG | + | chr7_3:1165937-1165956 | None:intergenic | 60.0% | |
| CTGCAGAGTGCAAGCGTCCA+AGG | - | chr7_3:1165935-1165954 | Msa1088150:CDS | 60.0% | |
| CGATTGGAAGCCAGAGCCCG+AGG | + | chr7_3:1164999-1165018 | None:intergenic | 65.0% | |
| CGATTGGAAGCCAGAGCCCG+AGG | + | chr7_3:1164999-1165018 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 1164708 | 1166196 | 1164708 | ID=Msa1088150;Name=Msa1088150 |
| chr7_3 | mRNA | 1164708 | 1166196 | 1164708 | ID=Msa1088150-mRNA-1;Parent=Msa1088150;Name=Msa1088150-mRNA-1;_AED=0.27;_eAED=0.27;_QI=119|1|1|1|1|1|3|233|282 |
| chr7_3 | exon | 1164708 | 1165319 | 1164708 | ID=Msa1088150-mRNA-1:exon:471;Parent=Msa1088150-mRNA-1 |
| chr7_3 | exon | 1165407 | 1165600 | 1165407 | ID=Msa1088150-mRNA-1:exon:470;Parent=Msa1088150-mRNA-1 |
| chr7_3 | exon | 1165802 | 1166196 | 1165802 | ID=Msa1088150-mRNA-1:exon:469;Parent=Msa1088150-mRNA-1 |
| chr7_3 | five_prime_UTR | 1166078 | 1166196 | 1166078 | ID=Msa1088150-mRNA-1:five_prime_utr;Parent=Msa1088150-mRNA-1 |
| chr7_3 | CDS | 1165802 | 1166077 | 1165802 | ID=Msa1088150-mRNA-1:cds;Parent=Msa1088150-mRNA-1 |
| chr7_3 | CDS | 1165407 | 1165600 | 1165407 | ID=Msa1088150-mRNA-1:cds;Parent=Msa1088150-mRNA-1 |
| chr7_3 | CDS | 1164941 | 1165319 | 1164941 | ID=Msa1088150-mRNA-1:cds;Parent=Msa1088150-mRNA-1 |
| chr7_3 | three_prime_UTR | 1164708 | 1164940 | 1164708 | ID=Msa1088150-mRNA-1:three_prime_utr;Parent=Msa1088150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
