Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0422150 | AFK40175.1 | 95.984 | 249 | 8 | 1 | 1 | 249 | 1 | 247 | 3.06e-171 | 489 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0422150 | I3SIT3 | 95.984 | 249 | 8 | 1 | 1 | 249 | 1 | 247 | 1.46e-171 | 489 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0078130 | Msa0422150 | 0.815838 | 7.530421e-52 | -8.615850e-47 |
| Msa0123320 | Msa0422150 | 0.805673 | 1.191514e-49 | -8.615850e-47 |
| Msa0159590 | Msa0422150 | 0.803384 | 3.576385e-49 | -8.615850e-47 |
| Msa0168050 | Msa0422150 | 0.807644 | 4.570473e-50 | -8.615850e-47 |
| Msa0373500 | Msa0422150 | 0.816915 | 4.323850e-52 | -8.615850e-47 |
| Msa0389690 | Msa0422150 | 0.802008 | 6.876904e-49 | -8.615850e-47 |
| Msa0422150 | Msa0454560 | 0.833257 | 5.917698e-56 | -8.615850e-47 |
| Msa0422150 | Msa0468620 | 0.872976 | 2.100923e-67 | -8.615850e-47 |
| Msa0422150 | Msa0473910 | 0.810171 | 1.315856e-50 | -8.615850e-47 |
| Msa0422150 | Msa0502510 | 0.807453 | 5.016762e-50 | -8.615850e-47 |
| Msa0422150 | Msa0514500 | 0.875305 | 3.422646e-68 | -8.615850e-47 |
| Msa0422150 | Msa0545920 | 0.834556 | 2.800293e-56 | -8.615850e-47 |
| Msa0422150 | Msa0601720 | 0.834597 | 2.734451e-56 | -8.615850e-47 |
| Msa0422150 | Msa0605530 | 0.801134 | 1.039040e-48 | -8.615850e-47 |
| Msa0422150 | Msa0641990 | 0.816064 | 6.703343e-52 | -8.615850e-47 |
| Msa0422150 | Msa0642550 | 0.814412 | 1.561468e-51 | -8.615850e-47 |
| Msa0422150 | Msa0659370 | 0.800026 | 1.747944e-48 | -8.615850e-47 |
| Msa0422150 | Msa0681050 | 0.834950 | 2.227852e-56 | -8.615850e-47 |
| Msa0422150 | Msa0705680 | 0.818223 | 2.192634e-52 | -8.615850e-47 |
| Msa0422150 | Msa0754450 | 0.839169 | 1.860751e-57 | -8.615850e-47 |
| Msa0422150 | Msa0799450 | 0.805043 | 1.614859e-49 | -8.615850e-47 |
| Msa0422150 | Msa0837710 | 0.814784 | 1.291651e-51 | -8.615850e-47 |
| Msa0422150 | Msa0879920 | 0.805927 | 1.054076e-49 | -8.615850e-47 |
| Msa0422150 | Msa1169690 | 0.818698 | 1.710906e-52 | -8.615850e-47 |
| Msa0422150 | Msa1183740 | 0.809465 | 1.867386e-50 | -8.615850e-47 |
| Msa0422150 | Msa1218820 | 0.806754 | 7.054071e-50 | -8.615850e-47 |
| Msa0422150 | Msa1301820 | 0.816187 | 6.293049e-52 | -8.615850e-47 |
| Msa0422150 | Msa1365500 | 0.830746 | 2.468720e-55 | -8.615850e-47 |
| Msa0422150 | Msa1382830 | 0.807831 | 4.170290e-50 | -8.615850e-47 |
| Msa0422150 | Msa1426320 | 0.802300 | 5.989754e-49 | -8.615850e-47 |
| Msa0422150 | Msa1432520 | 0.800223 | 1.593902e-48 | -8.615850e-47 |
| Msa0422150 | Msa1459010 | 0.825217 | 5.285940e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0422150 | MtrunA17_Chr3g0122911 | 96.386 | 249 | 7 | 1 | 1 | 249 | 1 | 247 | 3.07e-175 | 496 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0422150 | AT1G67630.1 | 50.787 | 254 | 107 | 8 | 3 | 248 | 5 | 248 | 1.12e-73 | 236 |
Find 51 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCATACCTGACGTAGAAAA+TGG | 0.283304 | 3_2:+71264118 | Msa0422150:CDS |
| GGGAAGCTTATTATCTTAAC+AGG | 0.298972 | 3_2:+71263024 | Msa0422150:CDS |
| GATATTATTAAGGAGGAAAC+TGG | 0.336739 | 3_2:+71263316 | Msa0422150:CDS |
| AGATGTTCATTGGTGATTCA+TGG | 0.343466 | 3_2:+71264214 | Msa0422150:CDS |
| ACGATTATTCGTTGGTGTGC+TGG | 0.356878 | 3_2:-71263963 | None:intergenic |
| ATCTGGAAAGCCGGCTGATC+TGG | 0.384813 | 3_2:+71264042 | Msa0422150:CDS |
| TGTGAAAGAAGATATTATTA+AGG | 0.385269 | 3_2:+71263306 | Msa0422150:CDS |
| AATTGTACAAAATGCTGAAA+TGG | 0.396052 | 3_2:+71263255 | Msa0422150:CDS |
| ATGAATCTGCAACCTGGTTT+CGG | 0.400151 | 3_2:-71264244 | None:intergenic |
| CATGATACACCATCTTTGTA+TGG | 0.412009 | 3_2:+71264007 | Msa0422150:CDS |
| TTGAGGTTGCCGAATGAAAA+TGG | 0.413349 | 3_2:-71262728 | None:intergenic |
| GCAAGAGCACTTGTAGCCTC+TGG | 0.425289 | 3_2:+71264399 | Msa0422150:CDS |
| GTTGCAGATTCATGTATGAT+AGG | 0.430713 | 3_2:+71264254 | Msa0422150:CDS |
| TCATTGGTGATTCATGGATC+AGG | 0.431928 | 3_2:+71264220 | Msa0422150:CDS |
| CTTCCGATCTCGTCTCAAGC+TGG | 0.441376 | 3_2:+71263003 | Msa0422150:CDS |
| CGATTATTCGTTGGTGTGCT+GGG | 0.444015 | 3_2:-71263962 | None:intergenic |
| AAAGATGGTGTATCATGTAT+AGG | 0.449011 | 3_2:-71264001 | None:intergenic |
| TTCTTCTTCGAAATCGAACT+CGG | 0.459596 | 3_2:-71262830 | None:intergenic |
| GTATGATAGGACTGAGGATA+AGG | 0.465764 | 3_2:+71264267 | Msa0422150:CDS |
| TTCCGATCTCGTCTCAAGCT+GGG | 0.494489 | 3_2:+71263004 | Msa0422150:CDS |
| CTAGACGAAGAGAAGAAAAG+TGG | 0.517329 | 3_2:+71262763 | Msa0422150:five_prime_UTR |
| AGATTGATGCTATAGAAAAC+CGG | 0.517344 | 3_2:+71264364 | Msa0422150:intron |
| CTCACCGGTGAGGCAATTGA+AGG | 0.519073 | 3_2:-71264444 | None:intergenic |
| AGACCCTTCAATTGCCTCAC+CGG | 0.521579 | 3_2:+71264440 | Msa0422150:CDS |
| AAAATATTTCCATACAAAGA+TGG | 0.522271 | 3_2:-71264016 | None:intergenic |
| CATGGATCAGGGCCGAAACC+AGG | 0.528621 | 3_2:+71264232 | Msa0422150:CDS |
| TACAAAATGCTGAAATGGAA+GGG | 0.533300 | 3_2:+71263260 | Msa0422150:CDS |
| GGTTTGCATCTTTATTCCAT+CGG | 0.535724 | 3_2:+71263337 | Msa0422150:CDS |
| GTACAAAATGCTGAAATGGA+AGG | 0.538126 | 3_2:+71263259 | Msa0422150:CDS |
| CAAGAGCACTTGTAGCCTCT+GGG | 0.540735 | 3_2:+71264400 | Msa0422150:CDS |
| CATTGGTGATTCATGGATCA+GGG | 0.542239 | 3_2:+71264221 | Msa0422150:CDS |
| CAGCTTGAGACGAGATCGGA+AGG | 0.546989 | 3_2:-71263002 | None:intergenic |
| TCTAGGGTTTCTCTGAGTTG+AGG | 0.548522 | 3_2:-71262745 | None:intergenic |
| ACATCTTGACGATTATTCGT+TGG | 0.552885 | 3_2:-71263971 | None:intergenic |
| TTACATTTCTACATCTCCGA+TGG | 0.560768 | 3_2:-71263353 | None:intergenic |
| GAGGCAATTGAAGGGTCTGT+TGG | 0.561516 | 3_2:-71264435 | None:intergenic |
| GCTTGAGACGAGATCGGAAG+GGG | 0.570414 | 3_2:-71263000 | None:intergenic |
| AAGGGTGTAACCAGATCAGC+CGG | 0.571145 | 3_2:-71264052 | None:intergenic |
| GGTGATATTTGACAGACAGC+TGG | 0.575422 | 3_2:+71263225 | Msa0422150:intron |
| GAAAGAAGATATTATTAAGG+AGG | 0.584316 | 3_2:+71263309 | Msa0422150:CDS |
| GGTTGCCGAATGAAAATGGC+GGG | 0.587238 | 3_2:-71262724 | None:intergenic |
| TTCCCAGCTTGAGACGAGAT+CGG | 0.595051 | 3_2:-71263006 | None:intergenic |
| CTTAAATGATGATGATACAA+AGG | 0.596367 | 3_2:+71263931 | Msa0422150:CDS |
| AAAACGGACAGATAGGTTCG+CGG | 0.616408 | 3_2:+71264078 | Msa0422150:CDS |
| TCATACATGAATCTGCAACC+TGG | 0.619077 | 3_2:-71264250 | None:intergenic |
| TCACCGGTGAGGCAATTGAA+GGG | 0.633226 | 3_2:-71264443 | None:intergenic |
| AGCTTGAGACGAGATCGGAA+GGG | 0.646335 | 3_2:-71263001 | None:intergenic |
| ATGCATTAAACTCACCGGTG+AGG | 0.691949 | 3_2:-71264454 | None:intergenic |
| TGGTTCTTCATAGAGCCCAG+AGG | 0.708216 | 3_2:-71264415 | None:intergenic |
| ATTCATGTATGATAGGACTG+AGG | 0.726348 | 3_2:+71264261 | Msa0422150:CDS |
| AGGTTGCCGAATGAAAATGG+CGG | 0.736955 | 3_2:-71262725 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATTTAATGAATAAATAAA+AGG | - | chr3_2:71263632-71263651 | None:intergenic | 10.0% |
| !! | CAATTTAATGAATAAATAAA+AGG | - | chr3_2:71263632-71263651 | None:intergenic | 10.0% |
| !!! | TTAATTGTTGCAAAATTTTT+AGG | + | chr3_2:71262948-71262967 | Msa0422150:intron | 15.0% |
| !!! | TTAACAAAATTTGTTTTTGT+TGG | + | chr3_2:71263178-71263197 | Msa0422150:intron | 15.0% |
| !!! | TTAATTGTTGCAAAATTTTT+AGG | + | chr3_2:71262948-71262967 | Msa0422150:intron | 15.0% |
| !!! | TTAACAAAATTTGTTTTTGT+TGG | + | chr3_2:71263178-71263197 | Msa0422150:intron | 15.0% |
| !! | TGATTGATTAATTAAGCAAA+AGG | - | chr3_2:71262894-71262913 | None:intergenic | 20.0% |
| !!! | AATTTTTAGCGAATAAATAC+TGG | + | chr3_2:71263085-71263104 | Msa0422150:intron | 20.0% |
| !! | GAAAATTTACGATTTGAATT+TGG | + | chr3_2:71263200-71263219 | Msa0422150:intron | 20.0% |
| !! | TGTGAAAGAAGATATTATTA+AGG | + | chr3_2:71263306-71263325 | Msa0422150:CDS | 20.0% |
| !! | ATGCATTTACATTTGAATTA+AGG | + | chr3_2:71263414-71263433 | Msa0422150:intron | 20.0% |
| !! | TTTATTGTTGTATCTGTTAA+TGG | + | chr3_2:71263827-71263846 | Msa0422150:intron | 20.0% |
| !! | AAAATATTTCCATACAAAGA+TGG | - | chr3_2:71264019-71264038 | None:intergenic | 20.0% |
| !! | ATCAACAAACAAATGTAAAA+GGG | - | chr3_2:71264326-71264345 | None:intergenic | 20.0% |
| !! | TATCAACAAACAAATGTAAA+AGG | - | chr3_2:71264327-71264346 | None:intergenic | 20.0% |
| !! | TGATTGATTAATTAAGCAAA+AGG | - | chr3_2:71262894-71262913 | None:intergenic | 20.0% |
| !!! | AATTTTTAGCGAATAAATAC+TGG | + | chr3_2:71263085-71263104 | Msa0422150:intron | 20.0% |
| !! | GAAAATTTACGATTTGAATT+TGG | + | chr3_2:71263200-71263219 | Msa0422150:intron | 20.0% |
| !! | TGTGAAAGAAGATATTATTA+AGG | + | chr3_2:71263306-71263325 | Msa0422150:CDS | 20.0% |
| !! | ATGCATTTACATTTGAATTA+AGG | + | chr3_2:71263414-71263433 | Msa0422150:intron | 20.0% |
| !! | TTTATTGTTGTATCTGTTAA+TGG | + | chr3_2:71263827-71263846 | Msa0422150:intron | 20.0% |
| !! | AAAATATTTCCATACAAAGA+TGG | - | chr3_2:71264019-71264038 | None:intergenic | 20.0% |
| !! | ATCAACAAACAAATGTAAAA+GGG | - | chr3_2:71264326-71264345 | None:intergenic | 20.0% |
| !! | TATCAACAAACAAATGTAAA+AGG | - | chr3_2:71264327-71264346 | None:intergenic | 20.0% |
| ! | ATTTACGATTTGAATTTGGA+CGG | + | chr3_2:71263204-71263223 | Msa0422150:intron | 25.0% |
| !! | ATTTCAGCATTTTGTACAAT+TGG | - | chr3_2:71263256-71263275 | None:intergenic | 25.0% |
| ! | AATTGTACAAAATGCTGAAA+TGG | + | chr3_2:71263255-71263274 | Msa0422150:CDS | 25.0% |
| ! | GAAAGAAGATATTATTAAGG+AGG | + | chr3_2:71263309-71263328 | Msa0422150:CDS | 25.0% |
| ! | AAATGTGGAAGAAAATTATC+CGG | + | chr3_2:71263573-71263592 | Msa0422150:intron | 25.0% |
| ! | TTCTTGAACTTGTATAAGTT+GGG | + | chr3_2:71263652-71263671 | Msa0422150:intron | 25.0% |
| ! | AGATACTCTGTGTAAATATT+CGG | - | chr3_2:71263739-71263758 | None:intergenic | 25.0% |
| !! | ATATAGTGTTGTTGAGTTAA+AGG | + | chr3_2:71263872-71263891 | Msa0422150:intron | 25.0% |
| !! | CTTAAATGATGATGATACAA+AGG | + | chr3_2:71263931-71263950 | Msa0422150:CDS | 25.0% |
| !!! | TATGGAAATATTTTAGCATC+TGG | + | chr3_2:71264025-71264044 | Msa0422150:CDS | 25.0% |
| ! | ATTTACGATTTGAATTTGGA+CGG | + | chr3_2:71263204-71263223 | Msa0422150:intron | 25.0% |
| !! | ATTTCAGCATTTTGTACAAT+TGG | - | chr3_2:71263256-71263275 | None:intergenic | 25.0% |
| ! | AATTGTACAAAATGCTGAAA+TGG | + | chr3_2:71263255-71263274 | Msa0422150:CDS | 25.0% |
| ! | GAAAGAAGATATTATTAAGG+AGG | + | chr3_2:71263309-71263328 | Msa0422150:CDS | 25.0% |
| ! | AAATGTGGAAGAAAATTATC+CGG | + | chr3_2:71263573-71263592 | Msa0422150:intron | 25.0% |
| ! | TTCTTGAACTTGTATAAGTT+GGG | + | chr3_2:71263652-71263671 | Msa0422150:intron | 25.0% |
| ! | AGATACTCTGTGTAAATATT+CGG | - | chr3_2:71263739-71263758 | None:intergenic | 25.0% |
| !! | ATATAGTGTTGTTGAGTTAA+AGG | + | chr3_2:71263872-71263891 | Msa0422150:intron | 25.0% |
| !! | CTTAAATGATGATGATACAA+AGG | + | chr3_2:71263931-71263950 | Msa0422150:CDS | 25.0% |
| !!! | TATGGAAATATTTTAGCATC+TGG | + | chr3_2:71264025-71264044 | Msa0422150:CDS | 25.0% |
| TACAAAATGCTGAAATGGAA+GGG | + | chr3_2:71263260-71263279 | Msa0422150:CDS | 30.0% | |
| GATATTATTAAGGAGGAAAC+TGG | + | chr3_2:71263316-71263335 | Msa0422150:CDS | 30.0% | |
| ! | CCTAAAAAACTGCAGATTTT+CGG | - | chr3_2:71263458-71263477 | None:intergenic | 30.0% |
| ! | AGCTATAAGAGGTATGTAAT+GGG | - | chr3_2:71263540-71263559 | None:intergenic | 30.0% |
| ! | AAGCTATAAGAGGTATGTAA+TGG | - | chr3_2:71263541-71263560 | None:intergenic | 30.0% |
| GTTCTTGAACTTGTATAAGT+TGG | + | chr3_2:71263651-71263670 | Msa0422150:intron | 30.0% | |
| AAAAACAACCTCAGAGAATA+TGG | + | chr3_2:71263711-71263730 | Msa0422150:intron | 30.0% | |
| AACCTATGTTTCATACCAAA+GGG | - | chr3_2:71263764-71263783 | None:intergenic | 30.0% | |
| ATAGGTTGTTGATGCATATT+AGG | + | chr3_2:71263777-71263796 | Msa0422150:intron | 30.0% | |
| AAAGATGGTGTATCATGTAT+AGG | - | chr3_2:71264004-71264023 | None:intergenic | 30.0% | |
| ! | TCACCAATGAACATCTTTTT+CGG | - | chr3_2:71264210-71264229 | None:intergenic | 30.0% |
| AGATTGATGCTATAGAAAAC+CGG | + | chr3_2:71264364-71264383 | Msa0422150:intron | 30.0% | |
| !!! | CTCTTGCATGTTTTTTAATC+CGG | - | chr3_2:71264386-71264405 | None:intergenic | 30.0% |
| TACAAAATGCTGAAATGGAA+GGG | + | chr3_2:71263260-71263279 | Msa0422150:CDS | 30.0% | |
| GATATTATTAAGGAGGAAAC+TGG | + | chr3_2:71263316-71263335 | Msa0422150:CDS | 30.0% | |
| ! | CCTAAAAAACTGCAGATTTT+CGG | - | chr3_2:71263458-71263477 | None:intergenic | 30.0% |
| ! | AGCTATAAGAGGTATGTAAT+GGG | - | chr3_2:71263540-71263559 | None:intergenic | 30.0% |
| ! | AAGCTATAAGAGGTATGTAA+TGG | - | chr3_2:71263541-71263560 | None:intergenic | 30.0% |
| GTTCTTGAACTTGTATAAGT+TGG | + | chr3_2:71263651-71263670 | Msa0422150:intron | 30.0% | |
| AAAAACAACCTCAGAGAATA+TGG | + | chr3_2:71263711-71263730 | Msa0422150:intron | 30.0% | |
| AACCTATGTTTCATACCAAA+GGG | - | chr3_2:71263764-71263783 | None:intergenic | 30.0% | |
| ATAGGTTGTTGATGCATATT+AGG | + | chr3_2:71263777-71263796 | Msa0422150:intron | 30.0% | |
| AAAGATGGTGTATCATGTAT+AGG | - | chr3_2:71264004-71264023 | None:intergenic | 30.0% | |
| ! | TCACCAATGAACATCTTTTT+CGG | - | chr3_2:71264210-71264229 | None:intergenic | 30.0% |
| AGATTGATGCTATAGAAAAC+CGG | + | chr3_2:71264364-71264383 | Msa0422150:intron | 30.0% | |
| !!! | CTCTTGCATGTTTTTTAATC+CGG | - | chr3_2:71264386-71264405 | None:intergenic | 30.0% |
| !! | AAATTCCCGCCATTTTCATT+CGG | + | chr3_2:71262719-71262738 | Msa0422150:five_prime_UTR | 35.0% |
| ! | ACTTTTCTTCTCTTCGTCTA+GGG | - | chr3_2:71262764-71262783 | None:intergenic | 35.0% |
| TTCTTCTTCGAAATCGAACT+CGG | - | chr3_2:71262833-71262852 | None:intergenic | 35.0% | |
| GGGAAGCTTATTATCTTAAC+AGG | + | chr3_2:71263024-71263043 | Msa0422150:CDS | 35.0% | |
| GTACAAAATGCTGAAATGGA+AGG | + | chr3_2:71263259-71263278 | Msa0422150:CDS | 35.0% | |
| GGTTTGCATCTTTATTCCAT+CGG | + | chr3_2:71263337-71263356 | Msa0422150:CDS | 35.0% | |
| TTACATTTCTACATCTCCGA+TGG | - | chr3_2:71263356-71263375 | None:intergenic | 35.0% | |
| !!! | CCGAAAATCTGCAGTTTTTT+AGG | + | chr3_2:71263455-71263474 | Msa0422150:intron | 35.0% |
| !!! | CTAGCAGAATTTTTTGCAGA+AGG | - | chr3_2:71263599-71263618 | None:intergenic | 35.0% |
| ! | TTGTATAAGTTGGGTCGTAA+GGG | + | chr3_2:71263661-71263680 | Msa0422150:intron | 35.0% |
| ATCCCTTTGGTATGAAACAT+AGG | + | chr3_2:71263759-71263778 | Msa0422150:intron | 35.0% | |
| CAACCTATGTTTCATACCAA+AGG | - | chr3_2:71263765-71263784 | None:intergenic | 35.0% | |
| GCATATTAGGATAGACTACT+AGG | + | chr3_2:71263790-71263809 | Msa0422150:intron | 35.0% | |
| TGATGAAAATCCTTGTATGC+AGG | + | chr3_2:71263906-71263925 | Msa0422150:intron | 35.0% | |
| ! | CATTTAAGATCCTGCATACA+AGG | - | chr3_2:71263919-71263938 | None:intergenic | 35.0% |
| ACATCTTGACGATTATTCGT+TGG | - | chr3_2:71263974-71263993 | None:intergenic | 35.0% | |
| CATGATACACCATCTTTGTA+TGG | + | chr3_2:71264007-71264026 | Msa0422150:CDS | 35.0% | |
| !!! | TATTTTAGCATCTGGAAAGC+CGG | + | chr3_2:71264033-71264052 | Msa0422150:CDS | 35.0% |
| ! | TGGTTACACCCTTTTCAAAA+CGG | + | chr3_2:71264062-71264081 | Msa0422150:CDS | 35.0% |
| !!! | CTATCTGTCCGTTTTGAAAA+GGG | - | chr3_2:71264073-71264092 | None:intergenic | 35.0% |
| ! | TGTTTTCCATTTTCTACGTC+AGG | - | chr3_2:71264127-71264146 | None:intergenic | 35.0% |
| AAGCCGAAAAAGATGTTCAT+TGG | + | chr3_2:71264204-71264223 | Msa0422150:CDS | 35.0% | |
| ! | AGATGTTCATTGGTGATTCA+TGG | + | chr3_2:71264214-71264233 | Msa0422150:CDS | 35.0% |
| GTTGCAGATTCATGTATGAT+AGG | + | chr3_2:71264254-71264273 | Msa0422150:CDS | 35.0% | |
| ATTCATGTATGATAGGACTG+AGG | + | chr3_2:71264261-71264280 | Msa0422150:CDS | 35.0% | |
| ! | GTTTGTTGATACCTGATTAC+TGG | + | chr3_2:71264336-71264355 | Msa0422150:intron | 35.0% |
| !! | AAATTCCCGCCATTTTCATT+CGG | + | chr3_2:71262719-71262738 | Msa0422150:five_prime_UTR | 35.0% |
| ! | ACTTTTCTTCTCTTCGTCTA+GGG | - | chr3_2:71262764-71262783 | None:intergenic | 35.0% |
| TTCTTCTTCGAAATCGAACT+CGG | - | chr3_2:71262833-71262852 | None:intergenic | 35.0% | |
| GGGAAGCTTATTATCTTAAC+AGG | + | chr3_2:71263024-71263043 | Msa0422150:CDS | 35.0% | |
| GTACAAAATGCTGAAATGGA+AGG | + | chr3_2:71263259-71263278 | Msa0422150:CDS | 35.0% | |
| GGTTTGCATCTTTATTCCAT+CGG | + | chr3_2:71263337-71263356 | Msa0422150:CDS | 35.0% | |
| TTACATTTCTACATCTCCGA+TGG | - | chr3_2:71263356-71263375 | None:intergenic | 35.0% | |
| !!! | CCGAAAATCTGCAGTTTTTT+AGG | + | chr3_2:71263455-71263474 | Msa0422150:intron | 35.0% |
| !!! | CTAGCAGAATTTTTTGCAGA+AGG | - | chr3_2:71263599-71263618 | None:intergenic | 35.0% |
| ! | TTGTATAAGTTGGGTCGTAA+GGG | + | chr3_2:71263661-71263680 | Msa0422150:intron | 35.0% |
| ATCCCTTTGGTATGAAACAT+AGG | + | chr3_2:71263759-71263778 | Msa0422150:intron | 35.0% | |
| CAACCTATGTTTCATACCAA+AGG | - | chr3_2:71263765-71263784 | None:intergenic | 35.0% | |
| GCATATTAGGATAGACTACT+AGG | + | chr3_2:71263790-71263809 | Msa0422150:intron | 35.0% | |
| TGATGAAAATCCTTGTATGC+AGG | + | chr3_2:71263906-71263925 | Msa0422150:intron | 35.0% | |
| ! | CATTTAAGATCCTGCATACA+AGG | - | chr3_2:71263919-71263938 | None:intergenic | 35.0% |
| ACATCTTGACGATTATTCGT+TGG | - | chr3_2:71263974-71263993 | None:intergenic | 35.0% | |
| CATGATACACCATCTTTGTA+TGG | + | chr3_2:71264007-71264026 | Msa0422150:CDS | 35.0% | |
| !!! | TATTTTAGCATCTGGAAAGC+CGG | + | chr3_2:71264033-71264052 | Msa0422150:CDS | 35.0% |
| ! | TGGTTACACCCTTTTCAAAA+CGG | + | chr3_2:71264062-71264081 | Msa0422150:CDS | 35.0% |
| !!! | CTATCTGTCCGTTTTGAAAA+GGG | - | chr3_2:71264073-71264092 | None:intergenic | 35.0% |
| ! | TGTTTTCCATTTTCTACGTC+AGG | - | chr3_2:71264127-71264146 | None:intergenic | 35.0% |
| AAGCCGAAAAAGATGTTCAT+TGG | + | chr3_2:71264204-71264223 | Msa0422150:CDS | 35.0% | |
| ! | AGATGTTCATTGGTGATTCA+TGG | + | chr3_2:71264214-71264233 | Msa0422150:CDS | 35.0% |
| GTTGCAGATTCATGTATGAT+AGG | + | chr3_2:71264254-71264273 | Msa0422150:CDS | 35.0% | |
| ATTCATGTATGATAGGACTG+AGG | + | chr3_2:71264261-71264280 | Msa0422150:CDS | 35.0% | |
| ! | GTTTGTTGATACCTGATTAC+TGG | + | chr3_2:71264336-71264355 | Msa0422150:intron | 35.0% |
| TTGAGGTTGCCGAATGAAAA+TGG | - | chr3_2:71262731-71262750 | None:intergenic | 40.0% | |
| ! | CACTTTTCTTCTCTTCGTCT+AGG | - | chr3_2:71262765-71262784 | None:intergenic | 40.0% |
| CTAGACGAAGAGAAGAAAAG+TGG | + | chr3_2:71262763-71262782 | Msa0422150:five_prime_UTR | 40.0% | |
| ACAGTGATGCAAGCTATAAG+AGG | - | chr3_2:71263551-71263570 | None:intergenic | 40.0% | |
| CTTGCATCACTGTGTAAATG+TGG | + | chr3_2:71263558-71263577 | Msa0422150:intron | 40.0% | |
| !!! | CAGAATTTTTTGCAGAAGGC+CGG | - | chr3_2:71263595-71263614 | None:intergenic | 40.0% |
| ! | CTTGTATAAGTTGGGTCGTA+AGG | + | chr3_2:71263660-71263679 | Msa0422150:intron | 40.0% |
| ! | ACACAGAGTATCTATCCCTT+TGG | + | chr3_2:71263746-71263765 | Msa0422150:intron | 40.0% |
| !!! | CCTATCTGTCCGTTTTGAAA+AGG | - | chr3_2:71264074-71264093 | None:intergenic | 40.0% |
| ! | CCTTTTCAAAACGGACAGAT+AGG | + | chr3_2:71264071-71264090 | Msa0422150:CDS | 40.0% |
| ACCATACCTGACGTAGAAAA+TGG | + | chr3_2:71264118-71264137 | Msa0422150:CDS | 40.0% | |
| ! | TCCATTTTCTACGTCAGGTA+TGG | - | chr3_2:71264122-71264141 | None:intergenic | 40.0% |
| ! | TCATTGGTGATTCATGGATC+AGG | + | chr3_2:71264220-71264239 | Msa0422150:CDS | 40.0% |
| ! | CATTGGTGATTCATGGATCA+GGG | + | chr3_2:71264221-71264240 | Msa0422150:CDS | 40.0% |
| ATGAATCTGCAACCTGGTTT+CGG | - | chr3_2:71264247-71264266 | None:intergenic | 40.0% | |
| TCATACATGAATCTGCAACC+TGG | - | chr3_2:71264253-71264272 | None:intergenic | 40.0% | |
| GTATGATAGGACTGAGGATA+AGG | + | chr3_2:71264267-71264286 | Msa0422150:CDS | 40.0% | |
| CAATCTACATGCCAGTAATC+AGG | - | chr3_2:71264350-71264369 | None:intergenic | 40.0% | |
| !! | GAAAATGGCGGGAATTTTTC+CGG | - | chr3_2:71262716-71262735 | None:intergenic | 40.0% |
| TTGAGGTTGCCGAATGAAAA+TGG | - | chr3_2:71262731-71262750 | None:intergenic | 40.0% | |
| ! | CACTTTTCTTCTCTTCGTCT+AGG | - | chr3_2:71262765-71262784 | None:intergenic | 40.0% |
| CTAGACGAAGAGAAGAAAAG+TGG | + | chr3_2:71262763-71262782 | Msa0422150:five_prime_UTR | 40.0% | |
| ACAGTGATGCAAGCTATAAG+AGG | - | chr3_2:71263551-71263570 | None:intergenic | 40.0% | |
| CTTGCATCACTGTGTAAATG+TGG | + | chr3_2:71263558-71263577 | Msa0422150:intron | 40.0% | |
| !!! | CAGAATTTTTTGCAGAAGGC+CGG | - | chr3_2:71263595-71263614 | None:intergenic | 40.0% |
| ! | CTTGTATAAGTTGGGTCGTA+AGG | + | chr3_2:71263660-71263679 | Msa0422150:intron | 40.0% |
| ! | ACACAGAGTATCTATCCCTT+TGG | + | chr3_2:71263746-71263765 | Msa0422150:intron | 40.0% |
| !!! | CCTATCTGTCCGTTTTGAAA+AGG | - | chr3_2:71264074-71264093 | None:intergenic | 40.0% |
| ! | CCTTTTCAAAACGGACAGAT+AGG | + | chr3_2:71264071-71264090 | Msa0422150:CDS | 40.0% |
| ACCATACCTGACGTAGAAAA+TGG | + | chr3_2:71264118-71264137 | Msa0422150:CDS | 40.0% | |
| ! | TCCATTTTCTACGTCAGGTA+TGG | - | chr3_2:71264122-71264141 | None:intergenic | 40.0% |
| ! | TCATTGGTGATTCATGGATC+AGG | + | chr3_2:71264220-71264239 | Msa0422150:CDS | 40.0% |
| ! | CATTGGTGATTCATGGATCA+GGG | + | chr3_2:71264221-71264240 | Msa0422150:CDS | 40.0% |
| ATGAATCTGCAACCTGGTTT+CGG | - | chr3_2:71264247-71264266 | None:intergenic | 40.0% | |
| TCATACATGAATCTGCAACC+TGG | - | chr3_2:71264253-71264272 | None:intergenic | 40.0% | |
| GTATGATAGGACTGAGGATA+AGG | + | chr3_2:71264267-71264286 | Msa0422150:CDS | 40.0% | |
| CAATCTACATGCCAGTAATC+AGG | - | chr3_2:71264350-71264369 | None:intergenic | 40.0% | |
| AGGTTGCCGAATGAAAATGG+CGG | - | chr3_2:71262728-71262747 | None:intergenic | 45.0% | |
| ! | TCTAGGGTTTCTCTGAGTTG+AGG | - | chr3_2:71262748-71262767 | None:intergenic | 45.0% |
| GGTGATATTTGACAGACAGC+TGG | + | chr3_2:71263225-71263244 | Msa0422150:intron | 45.0% | |
| !! | ATTCGGTGCCATATTCTCTG+AGG | - | chr3_2:71263722-71263741 | None:intergenic | 45.0% |
| GGATAGACTACTAGGTACAG+TGG | + | chr3_2:71263798-71263817 | Msa0422150:intron | 45.0% | |
| CGATTATTCGTTGGTGTGCT+GGG | - | chr3_2:71263965-71263984 | None:intergenic | 45.0% | |
| ACGATTATTCGTTGGTGTGC+TGG | - | chr3_2:71263966-71263985 | None:intergenic | 45.0% | |
| AAAACGGACAGATAGGTTCG+CGG | + | chr3_2:71264078-71264097 | Msa0422150:CDS | 45.0% | |
| AGGTTGCCGAATGAAAATGG+CGG | - | chr3_2:71262728-71262747 | None:intergenic | 45.0% | |
| ! | TCTAGGGTTTCTCTGAGTTG+AGG | - | chr3_2:71262748-71262767 | None:intergenic | 45.0% |
| GGTGATATTTGACAGACAGC+TGG | + | chr3_2:71263225-71263244 | Msa0422150:intron | 45.0% | |
| !! | ATTCGGTGCCATATTCTCTG+AGG | - | chr3_2:71263722-71263741 | None:intergenic | 45.0% |
| GGATAGACTACTAGGTACAG+TGG | + | chr3_2:71263798-71263817 | Msa0422150:intron | 45.0% | |
| CGATTATTCGTTGGTGTGCT+GGG | - | chr3_2:71263965-71263984 | None:intergenic | 45.0% | |
| ACGATTATTCGTTGGTGTGC+TGG | - | chr3_2:71263966-71263985 | None:intergenic | 45.0% | |
| AAAACGGACAGATAGGTTCG+CGG | + | chr3_2:71264078-71264097 | Msa0422150:CDS | 45.0% | |
| GGTTGCCGAATGAAAATGGC+GGG | - | chr3_2:71262727-71262746 | None:intergenic | 50.0% | |
| AGCTTGAGACGAGATCGGAA+GGG | - | chr3_2:71263004-71263023 | None:intergenic | 50.0% | |
| TTCCGATCTCGTCTCAAGCT+GGG | + | chr3_2:71263004-71263023 | Msa0422150:CDS | 50.0% | |
| TTCCCAGCTTGAGACGAGAT+CGG | - | chr3_2:71263009-71263028 | None:intergenic | 50.0% | |
| ! | AAGGGTGTAACCAGATCAGC+CGG | - | chr3_2:71264055-71264074 | None:intergenic | 50.0% |
| !! | CAAGAGCACTTGTAGCCTCT+GGG | + | chr3_2:71264400-71264419 | Msa0422150:CDS | 50.0% |
| TGGTTCTTCATAGAGCCCAG+AGG | - | chr3_2:71264418-71264437 | None:intergenic | 50.0% | |
| GAGGCAATTGAAGGGTCTGT+TGG | - | chr3_2:71264438-71264457 | None:intergenic | 50.0% | |
| AGACCCTTCAATTGCCTCAC+CGG | + | chr3_2:71264440-71264459 | Msa0422150:CDS | 50.0% | |
| GGTTGCCGAATGAAAATGGC+GGG | - | chr3_2:71262727-71262746 | None:intergenic | 50.0% | |
| AGCTTGAGACGAGATCGGAA+GGG | - | chr3_2:71263004-71263023 | None:intergenic | 50.0% | |
| TTCCGATCTCGTCTCAAGCT+GGG | + | chr3_2:71263004-71263023 | Msa0422150:CDS | 50.0% | |
| TTCCCAGCTTGAGACGAGAT+CGG | - | chr3_2:71263009-71263028 | None:intergenic | 50.0% | |
| ! | AAGGGTGTAACCAGATCAGC+CGG | - | chr3_2:71264055-71264074 | None:intergenic | 50.0% |
| !! | CAAGAGCACTTGTAGCCTCT+GGG | + | chr3_2:71264400-71264419 | Msa0422150:CDS | 50.0% |
| TGGTTCTTCATAGAGCCCAG+AGG | - | chr3_2:71264418-71264437 | None:intergenic | 50.0% | |
| GAGGCAATTGAAGGGTCTGT+TGG | - | chr3_2:71264438-71264457 | None:intergenic | 50.0% | |
| GCTTGAGACGAGATCGGAAG+GGG | - | chr3_2:71263003-71263022 | None:intergenic | 55.0% | |
| CAGCTTGAGACGAGATCGGA+AGG | - | chr3_2:71263005-71263024 | None:intergenic | 55.0% | |
| CTTCCGATCTCGTCTCAAGC+TGG | + | chr3_2:71263003-71263022 | Msa0422150:CDS | 55.0% | |
| TCCCAATGTGATGATCCCCC+GGG | - | chr3_2:71263690-71263709 | None:intergenic | 55.0% | |
| GTCCCAATGTGATGATCCCC+CGG | - | chr3_2:71263691-71263710 | None:intergenic | 55.0% | |
| ATCTGGAAAGCCGGCTGATC+TGG | + | chr3_2:71264042-71264061 | Msa0422150:CDS | 55.0% | |
| !! | GCAAGAGCACTTGTAGCCTC+TGG | + | chr3_2:71264399-71264418 | Msa0422150:CDS | 55.0% |
| GCTTGAGACGAGATCGGAAG+GGG | - | chr3_2:71263003-71263022 | None:intergenic | 55.0% | |
| CAGCTTGAGACGAGATCGGA+AGG | - | chr3_2:71263005-71263024 | None:intergenic | 55.0% | |
| CTTCCGATCTCGTCTCAAGC+TGG | + | chr3_2:71263003-71263022 | Msa0422150:CDS | 55.0% | |
| TCCCAATGTGATGATCCCCC+GGG | - | chr3_2:71263690-71263709 | None:intergenic | 55.0% | |
| GTCCCAATGTGATGATCCCC+CGG | - | chr3_2:71263691-71263710 | None:intergenic | 55.0% | |
| ATCTGGAAAGCCGGCTGATC+TGG | + | chr3_2:71264042-71264061 | Msa0422150:CDS | 55.0% | |
| !! | GCAAGAGCACTTGTAGCCTC+TGG | + | chr3_2:71264399-71264418 | Msa0422150:CDS | 55.0% |
| GTTGGGTCGTAAGGGAAGCC+CGG | + | chr3_2:71263669-71263688 | Msa0422150:intron | 60.0% | |
| TTGGGTCGTAAGGGAAGCCC+GGG | + | chr3_2:71263670-71263689 | Msa0422150:intron | 60.0% | |
| AGCCCGGGGGATCATCACAT+TGG | + | chr3_2:71263685-71263704 | Msa0422150:intron | 60.0% | |
| GCCCGGGGGATCATCACATT+GGG | + | chr3_2:71263686-71263705 | Msa0422150:intron | 60.0% | |
| CATGGATCAGGGCCGAAACC+AGG | + | chr3_2:71264232-71264251 | Msa0422150:CDS | 60.0% | |
| GTTGGGTCGTAAGGGAAGCC+CGG | + | chr3_2:71263669-71263688 | Msa0422150:intron | 60.0% | |
| TTGGGTCGTAAGGGAAGCCC+GGG | + | chr3_2:71263670-71263689 | Msa0422150:intron | 60.0% | |
| AGCCCGGGGGATCATCACAT+TGG | + | chr3_2:71263685-71263704 | Msa0422150:intron | 60.0% | |
| GCCCGGGGGATCATCACATT+GGG | + | chr3_2:71263686-71263705 | Msa0422150:intron | 60.0% | |
| CATGGATCAGGGCCGAAACC+AGG | + | chr3_2:71264232-71264251 | Msa0422150:CDS | 60.0% | |
| TGGGTCGTAAGGGAAGCCCG+GGG | + | chr3_2:71263671-71263690 | Msa0422150:intron | 65.0% | |
| TGGGTCGTAAGGGAAGCCCG+GGG | + | chr3_2:71263671-71263690 | Msa0422150:intron | 65.0% | |
| GGGTCGTAAGGGAAGCCCGG+GGG | + | chr3_2:71263672-71263691 | Msa0422150:intron | 70.0% | |
| GGGTCGTAAGGGAAGCCCGG+GGG | + | chr3_2:71263672-71263691 | Msa0422150:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 71262716 | 71264461 | 71262716 | ID=Msa0422150;Name=Msa0422150 |
| chr3_2 | mRNA | 71262716 | 71264461 | 71262716 | ID=Msa0422150-mRNA-1;Parent=Msa0422150;Name=Msa0422150-mRNA-1;_AED=0.00;_eAED=0.00;_QI=80|1|0.8|1|1|1|5|0|249 |
| chr3_2 | exon | 71262716 | 71262877 | 71262716 | ID=Msa0422150-mRNA-1:exon:17331;Parent=Msa0422150-mRNA-1 |
| chr3_2 | exon | 71262970 | 71263045 | 71262970 | ID=Msa0422150-mRNA-1:exon:17332;Parent=Msa0422150-mRNA-1 |
| chr3_2 | exon | 71263240 | 71263371 | 71263240 | ID=Msa0422150-mRNA-1:exon:17333;Parent=Msa0422150-mRNA-1 |
| chr3_2 | exon | 71263928 | 71264288 | 71263928 | ID=Msa0422150-mRNA-1:exon:17334;Parent=Msa0422150-mRNA-1 |
| chr3_2 | exon | 71264366 | 71264461 | 71264366 | ID=Msa0422150-mRNA-1:exon:17335;Parent=Msa0422150-mRNA-1 |
| chr3_2 | five_prime_UTR | 71262716 | 71262795 | 71262716 | ID=Msa0422150-mRNA-1:five_prime_utr;Parent=Msa0422150-mRNA-1 |
| chr3_2 | CDS | 71262796 | 71262877 | 71262796 | ID=Msa0422150-mRNA-1:cds;Parent=Msa0422150-mRNA-1 |
| chr3_2 | CDS | 71262970 | 71263045 | 71262970 | ID=Msa0422150-mRNA-1:cds;Parent=Msa0422150-mRNA-1 |
| chr3_2 | CDS | 71263240 | 71263371 | 71263240 | ID=Msa0422150-mRNA-1:cds;Parent=Msa0422150-mRNA-1 |
| chr3_2 | CDS | 71263928 | 71264288 | 71263928 | ID=Msa0422150-mRNA-1:cds;Parent=Msa0422150-mRNA-1 |
| chr3_2 | CDS | 71264366 | 71264461 | 71264366 | ID=Msa0422150-mRNA-1:cds;Parent=Msa0422150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
