AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0078130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078130 MtrunA17_Chr1g0188201 96.438 730 25 1 1 730 1 729 0.0 1457
Msa0078130 MtrunA17_Chr6g0476051 67.300 737 204 11 1 728 1 709 0.0 951
Msa0078130 MtrunA17_Chr7g0245851 48.427 731 317 12 1 726 354 1029 0.0 591
Msa0078130 MtrunA17_Chr5g0444881 51.803 527 242 6 12 528 12 536 3.86e-173 508
Msa0078130 MtrunA17_Chr1g0164981 46.568 539 271 4 14 538 15 550 3.64e-157 468
Msa0078130 MtrunA17_Chr8g0354131 42.958 568 304 5 9 566 8 565 9.66e-148 443
Msa0078130 MtrunA17_Chr3g0122591 40.342 585 317 9 13 570 17 596 3.30e-134 409
Msa0078130 MtrunA17_Chr8g0345241 37.354 514 280 10 9 505 8 496 6.46e-95 303
Msa0078130 MtrunA17_Chr4g0039561 77.778 54 12 0 24 77 144 197 6.02e-20 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078130 AT5G51600.1 61.642 743 227 11 1 728 1 700 0.0 858
Msa0078130 AT3G60840.1 46.922 731 328 15 1 726 1 676 0.0 597
Msa0078130 AT5G62250.2 57.222 540 208 8 10 538 4 531 0.0 528
Msa0078130 AT5G62250.1 57.222 540 208 8 10 538 4 531 0.0 528
Msa0078130 AT5G55230.3 50.286 525 252 4 12 528 12 535 2.18e-173 509
Msa0078130 AT5G55230.1 50.286 525 252 4 12 528 12 535 2.18e-173 509
Msa0078130 AT4G26760.1 48.952 525 259 4 12 528 12 535 5.52e-171 503
Msa0078130 AT5G55230.2 47.834 554 251 5 12 528 12 564 1.51e-167 496
Msa0078130 AT1G14690.1 43.345 586 301 10 11 571 13 592 1.49e-158 472
Msa0078130 AT1G14690.2 43.345 586 301 10 11 571 13 592 1.49e-158 472
Msa0078130 AT2G01910.1 43.351 579 289 10 6 553 8 578 4.02e-154 461
Msa0078130 AT2G01910.2 42.936 545 272 10 40 553 1 537 2.48e-141 427
Msa0078130 AT2G38720.1 43.511 524 277 6 19 528 12 530 1.27e-134 409
Msa0078130 AT1G27920.1 39.962 528 298 9 13 527 17 538 3.11e-122 377
Msa0078130 AT1G27920.2 40.100 399 227 6 10 400 14 408 8.30e-89 285

Find 194 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTGTTTATTAGATAATT+TGG 0.084271 1_2:-55435983 Msa0078130:intron
GTTAATTTGAAAGTAATTTA+AGG 0.177881 1_2:+55431245 None:intergenic
TCGACTGCACCATCTATTTC+TGG 0.205819 1_2:+55434092 None:intergenic
CGAAATGTACTGACCTATTT+AGG 0.223066 1_2:+55436527 None:intergenic
AATCATAAGTCAATTGTAAT+TGG 0.224252 1_2:-55431453 Msa0078130:three_prime_UTR
AGCCTCTCAATGGAAATTTA+TGG 0.269350 1_2:-55434994 Msa0078130:CDS
TTTACACTCTGGGGCTTTGA+TGG 0.272765 1_2:+55432755 None:intergenic
CTCTGGGGCTTTGATGGGCT+TGG 0.280888 1_2:+55432761 None:intergenic
CTTGGAATTCATCCCAGTTT+AGG 0.283771 1_2:-55434665 Msa0078130:CDS
AGGTCCTTCATCTCCTAAAC+TGG 0.294011 1_2:+55434652 None:intergenic
TTTGTCCCTGAAGCTTCTTC+AGG 0.302692 1_2:+55432819 None:intergenic
TTAGATGAGAGGGGAGAAAA+AGG 0.305885 1_2:+55431880 None:intergenic
AGCATCAATTCCTATGAATA+TGG 0.306259 1_2:-55431668 Msa0078130:CDS
ATCTCTTCTGTATGAACTTC+AGG 0.314909 1_2:-55436096 Msa0078130:intron
CTGATTGTTTCATCTGGAAA+TGG 0.315691 1_2:-55431324 Msa0078130:three_prime_UTR
TTCTTTCTGATTGTTTCATC+TGG 0.316024 1_2:-55431330 Msa0078130:three_prime_UTR
CCAAAGCTTCCTCTTTAACT+TGG 0.337746 1_2:+55433898 None:intergenic
CTTGGCTTGAGGAATATAAC+AGG 0.339409 1_2:-55433818 Msa0078130:CDS
AGGTCCCTTCTTTACACTCT+GGG 0.353573 1_2:+55432745 None:intergenic
GCAGGACCTGAAGAAGCTTC+AGG 0.359076 1_2:-55432825 Msa0078130:intron
AGGGAAGGACTGTACTCTTT+GGG 0.359646 1_2:+55434970 None:intergenic
GCAGAACAGGAGGCACTATA+TGG 0.361441 1_2:-55432791 Msa0078130:CDS
GCATTGTTGTTGCAAGATCT+TGG 0.363546 1_2:+55434447 None:intergenic
GTATCATTACTTACACTCTT+AGG 0.365452 1_2:+55434632 None:intergenic
GGTGCTCTTGAACCGTCTTT+AGG 0.365482 1_2:+55434744 None:intergenic
ATAAGTCTAGAGCTCAATTA+AGG 0.368083 1_2:-55435863 Msa0078130:CDS
ACTTGTTTATTAGATAATTT+GGG 0.374296 1_2:-55435982 Msa0078130:intron
AGCCGCAGTCATTGCCTTGC+AGG 0.375037 1_2:+55431750 None:intergenic
AAGGGAAGGACTGTACTCTT+TGG 0.375363 1_2:+55434969 None:intergenic
TTCTTGCATACTCTTCCTTC+AGG 0.376287 1_2:+55435097 None:intergenic
CCAAGTTAAAGAGGAAGCTT+TGG 0.381142 1_2:-55433898 Msa0078130:CDS
ATAGCATGGGAAAAGGAAAA+AGG 0.383625 1_2:-55433257 Msa0078130:CDS
ATAGGAATAGGCACTGTCTT+TGG 0.383703 1_2:+55431709 None:intergenic
AAGAGATCCACAAGTTGTTT+CGG 0.388576 1_2:+55436112 None:intergenic
GTTAGCATGATTACTTTGTT+TGG 0.390024 1_2:-55431503 Msa0078130:exon
CAGAGGAGATTCTAATTCAT+AGG 0.393747 1_2:+55431912 None:intergenic
AACAGCATTCTGTCTCTATC+AGG 0.394629 1_2:+55435939 None:intergenic
GACTTTAAGCAGACAGTCCT+TGG 0.399140 1_2:-55434683 Msa0078130:CDS
CAACAACAATGCTGGAGCTC+TGG 0.403421 1_2:-55434436 Msa0078130:CDS
GGTGTTTCTTGTTTATCATC+AGG 0.404694 1_2:-55432569 Msa0078130:intron
CAAAGGAATATTCAATCTCT+TGG 0.405068 1_2:+55431551 None:intergenic
CGAAGAGGACTGGATATTGC+TGG 0.406123 1_2:-55431973 Msa0078130:CDS
CCTCTTTAACTTGGGCAACC+TGG 0.414721 1_2:+55433907 None:intergenic
ATAGAAACTGACGACGGAAC+TGG 0.416026 1_2:+55431637 None:intergenic
TCGCCTGATCGACCTTCCTT+CGG 0.419017 1_2:+55435886 None:intergenic
TAGGTCCCTTCTTTACACTC+TGG 0.426732 1_2:+55432744 None:intergenic
CATTTAGTTCCAGAAATAGA+TGG 0.427244 1_2:-55434101 Msa0078130:CDS
TTACACTCTGGGGCTTTGAT+GGG 0.427747 1_2:+55432756 None:intergenic
GCCGTTGAAGCTATAGAATC+TGG 0.431116 1_2:-55434065 Msa0078130:intron
GGGTTGGTTAACAAAATTCC+AGG 0.433979 1_2:-55433636 Msa0078130:intron
GTACCGAAGGAAGGTCGATC+AGG 0.435947 1_2:-55435889 Msa0078130:CDS
ACAGTAGCTGACGACGGAAC+TGG 0.436358 1_2:+55431598 None:intergenic
GTATAACAGCAGCCAGTTGC+TGG 0.439967 1_2:+55434606 None:intergenic
GGAAATGGTCTTAGCTGTAT+TGG 0.442955 1_2:-55431309 Msa0078130:three_prime_UTR
AATTCTCTTTGTTTAGTGCT+CGG 0.444345 1_2:-55434710 Msa0078130:CDS
TAATGATACCATCCAGCAAC+TGG 0.446976 1_2:-55434618 Msa0078130:CDS
AAATGTGAATCGAAATCAAA+TGG 0.447485 1_2:-55436719 Msa0078130:five_prime_UTR
GATGCTGTTGAAGGTGTTGC+AGG 0.449140 1_2:+55431685 None:intergenic
AAGTCCTCGGACAAGGTGTT+TGG 0.449901 1_2:+55434326 None:intergenic
GGGACAAATGATAGCAGAAC+AGG 0.452376 1_2:-55432804 Msa0078130:CDS
GGTGTTGCAGGGATAGGAAT+AGG 0.452662 1_2:+55431697 None:intergenic
ACGACAATAATTCTTCATAT+AGG 0.452818 1_2:+55431280 None:intergenic
CAAAGCTTCCTCTTTAACTT+GGG 0.453861 1_2:+55433899 None:intergenic
GGAGTCATGGCCATATTCAT+AGG 0.455664 1_2:+55431658 None:intergenic
TTCTTGCAATGTACACAATC+AGG 0.459482 1_2:+55431427 None:intergenic
AGAGATTGAATATTCCTTTG+AGG 0.459668 1_2:-55431548 Msa0078130:CDS
TCGAAAAGACATACTTGAAA+AGG 0.461689 1_2:-55433874 Msa0078130:CDS
TAGATAATTTGGGACGAAGT+TGG 0.463311 1_2:-55435972 Msa0078130:CDS
CTTCAATAGGTGTATCCATC+AGG 0.465528 1_2:+55434411 None:intergenic
TTCTAGTCCGATCAAAATGC+TGG 0.467416 1_2:-55435123 Msa0078130:intron
GGTTTCGAATTCACATATGA+TGG 0.467496 1_2:-55433236 Msa0078130:CDS
AAACAAGAAACACCATCATC+CGG 0.474834 1_2:+55432578 None:intergenic
CATCCCAGTTTAGGAGATGA+AGG 0.475032 1_2:-55434656 Msa0078130:CDS
AGTTGTTTCGGCTTGCGAAA+GGG 0.475166 1_2:+55436124 None:intergenic
GCCCCTCCGGTTGACATCCT+AGG 0.475728 1_2:+55432725 None:intergenic
AACATCTGCTGCTCTTCAAT+AGG 0.476308 1_2:+55434398 None:intergenic
AACTGTTCAAGCACACATGC+AGG 0.479534 1_2:+55433936 None:intergenic
TACTTGAAAAGGTTGAGAAA+TGG 0.480668 1_2:-55433863 Msa0078130:CDS
GTTAAAATCCAGCAAAATGA+AGG 0.480954 1_2:-55434174 Msa0078130:CDS
GCAGCTATCTGTTCTGCAAT+GGG 0.484337 1_2:-55435810 Msa0078130:CDS
CAGGACCTGAAGAAGCTTCA+GGG 0.489651 1_2:-55432824 Msa0078130:CDS
TGCAAGAATTCTTCCACAGC+TGG 0.490130 1_2:-55435082 Msa0078130:CDS
CACTTTGTCAACCTTTCTCA+CGG 0.493688 1_2:+55432625 None:intergenic
CAAGTTAAAGAGGAAGCTTT+GGG 0.494444 1_2:-55433897 Msa0078130:CDS
GTTCCTTGATGCAGGAATTG+TGG 0.496600 1_2:-55433961 Msa0078130:intron
AGCAGGAACGTCGTAGGCAG+CGG 0.499177 1_2:-55433030 Msa0078130:CDS
TCATTCACGTGCCGTGAGAA+AGG 0.499275 1_2:-55432636 Msa0078130:CDS
GAATATTCAATCTCTTGGAC+TGG 0.500200 1_2:+55431556 None:intergenic
AGGTGGAGGTCGAAGTATCT+AGG 0.500263 1_2:-55434205 Msa0078130:CDS
GCAGATTCAAAGCCTCTCAA+TGG 0.503619 1_2:-55435004 Msa0078130:CDS
CTGCTGTTATACAACAACTA+CGG 0.506700 1_2:-55434595 Msa0078130:CDS
GTTGTTTCGGCTTGCGAAAG+GGG 0.510809 1_2:+55436125 None:intergenic
TTCAGTTATTTCATCTTCTG+AGG 0.512141 1_2:+55434349 None:intergenic
TGCTGTTATACAACAACTAC+GGG 0.513977 1_2:-55434594 Msa0078130:CDS
TTGAAGCATTGCTCCTCCCA+TGG 0.517348 1_2:+55432685 None:intergenic
CAGCATGTAATGAAGAGTCT+TGG 0.519087 1_2:-55433836 Msa0078130:CDS
ATGTGAAGCTCGAAGAGGAC+TGG 0.520047 1_2:-55431983 Msa0078130:intron
AAATGCACTTCAAAATGAAA+AGG 0.521153 1_2:-55434893 Msa0078130:intron
AAAGCCCCAGAGTGTAAAGA+AGG 0.521777 1_2:-55432750 Msa0078130:CDS
AAATGGTGTACGGACGGGCC+AGG 0.522441 1_2:+55436774 None:intergenic
AGATCTTGCAACAACAATGC+TGG 0.525162 1_2:-55434444 Msa0078130:CDS
CCAGGTTGCCCAAGTTAAAG+AGG 0.526082 1_2:-55433907 Msa0078130:CDS
AATTAAAATGGTGTACGGAC+GGG 0.527825 1_2:+55436769 None:intergenic
AAGTTGTTTCGGCTTGCGAA+AGG 0.529607 1_2:+55436123 None:intergenic
GCTTGAACAGTTTGAGCGCC+AGG 0.530898 1_2:-55433925 Msa0078130:CDS
TGCAGCTATCTGTTCTGCAA+TGG 0.531132 1_2:-55435811 Msa0078130:CDS
ACAATAATTCTTCATATAGG+TGG 0.532173 1_2:+55431283 None:intergenic
ATGATACATTATTAGATGAG+AGG 0.534448 1_2:+55431869 None:intergenic
GCCGCAGTCATTGCCTTGCA+GGG 0.534568 1_2:+55431751 None:intergenic
GATGACAATCGATATAATGC+TGG 0.534606 1_2:-55433702 Msa0078130:CDS
GGCCATAAATTTCCATTGAG+AGG 0.535029 1_2:+55434992 None:intergenic
AATATTCCTTTGAGGAAAGA+CGG 0.535863 1_2:-55431540 Msa0078130:CDS
TGATACATTATTAGATGAGA+GGG 0.536566 1_2:+55431870 None:intergenic
AGCTAGTCGAAGAGTCTCCA+TGG 0.537197 1_2:-55432702 Msa0078130:CDS
AAGGGACCTAGGATGTCAAC+CGG 0.537940 1_2:-55432731 Msa0078130:CDS
GCGACCTGTGCACATTAGAC+AGG 0.538218 1_2:-55435784 Msa0078130:intron
ACAAATCAGTTTCATCTACA+AGG 0.539176 1_2:+55434950 None:intergenic
GCAGGAACGTCGTAGGCAGC+GGG 0.541029 1_2:-55433029 Msa0078130:intron
TCTTCGACTAGCTGCCCCTC+CGG 0.543202 1_2:+55432712 None:intergenic
GTTCCGTCGTCAGCTACTGT+TGG 0.546475 1_2:-55431595 Msa0078130:CDS
TCTGTTCCACATCCTAGTCT+AGG 0.548316 1_2:+55431399 None:intergenic
GTCTAGAGCTCAATTAAGGC+AGG 0.549454 1_2:-55435859 Msa0078130:CDS
ACCAGATTCTATAGCTTCAA+CGG 0.551364 1_2:+55434064 None:intergenic
CAACTAAGTTACCCGGATGA+TGG 0.551553 1_2:-55432590 Msa0078130:CDS
TGCCTTGCAGGGACTAACAA+AGG 0.551650 1_2:+55431762 None:intergenic
AGCGAGCCGTCTTTCCTCAA+AGG 0.553853 1_2:+55431534 None:intergenic
ATAGGAATTGATGCTGTTGA+AGG 0.558217 1_2:+55431676 None:intergenic
AACAAGAAACACCATCATCC+GGG 0.558335 1_2:+55432579 None:intergenic
GTCGTCAGTTTCTATGAATG+TGG 0.558887 1_2:-55431629 Msa0078130:CDS
GCTAAAGAAGAGAACAGAGC+TGG 0.560308 1_2:-55434144 Msa0078130:CDS
GTTGAAGGTGTTGCAGGGAT+AGG 0.565034 1_2:+55431691 None:intergenic
AGCTGAGAAAGCACGTGGGT+TGG 0.565102 1_2:-55433652 Msa0078130:CDS
CAATAATTCTTCATATAGGT+GGG 0.565256 1_2:+55431284 None:intergenic
GCCTTGCAGGGACTAACAAA+GGG 0.569387 1_2:+55431763 None:intergenic
TGAAAAGGTTGAGAAATGGT+TGG 0.570979 1_2:-55433859 Msa0078130:CDS
AATCGATATAATGCTGGAAG+AGG 0.572803 1_2:-55433696 Msa0078130:CDS
GCTGGAGCTCTGGAACCTGA+TGG 0.572841 1_2:-55434426 Msa0078130:CDS
ACCTAGGATGTCAACCGGAG+GGG 0.578104 1_2:-55432726 Msa0078130:CDS
TCAGTTTCATCTACAAGGGA+AGG 0.579762 1_2:+55434955 None:intergenic
CTAACCTGTCTAATGTGCAC+AGG 0.580038 1_2:+55435780 None:intergenic
TAATTAAAATGGTGTACGGA+CGG 0.580118 1_2:+55436768 None:intergenic
TCGCAAGCCGAAACAACTTG+TGG 0.580655 1_2:-55436119 Msa0078130:CDS
GAAGAGGACTGGATATTGCT+GGG 0.580872 1_2:-55431972 Msa0078130:CDS
GCAGATTGGGCGCCTAAAGA+CGG 0.586867 1_2:-55434756 Msa0078130:intron
GCCCTTTGTTAGTCCCTGCA+AGG 0.587185 1_2:-55431764 Msa0078130:CDS
TAATGAAGAGTCTTGGCTTG+AGG 0.588637 1_2:-55433829 Msa0078130:CDS
GACCTAGGATGTCAACCGGA+GGG 0.588763 1_2:-55432727 Msa0078130:CDS
AGAAAGAGCAGGAACGTCGT+AGG 0.593211 1_2:-55433036 Msa0078130:CDS
AATTTGAAAGTAATTTAAGG+AGG 0.593399 1_2:+55431248 None:intergenic
TAAATTACAGAGAATGCAGA+AGG 0.595297 1_2:-55434567 Msa0078130:intron
CACGCAATTGATGAAGTCCT+CGG 0.598665 1_2:+55434313 None:intergenic
TCAAAATGCTGGAAGCCTGA+AGG 0.598820 1_2:-55435112 Msa0078130:CDS
TCTTGAAGTGTACCGAAGGA+AGG 0.601109 1_2:-55435898 Msa0078130:CDS
TGACGACGGAACTGGAGTCA+TGG 0.603098 1_2:+55431645 None:intergenic
GGTCCCTTCTTTACACTCTG+GGG 0.603762 1_2:+55432746 None:intergenic
AACAGCAGCCAGTTGCTGGA+TGG 0.604245 1_2:+55434610 None:intergenic
AGTGAACCTAGACTAGGATG+TGG 0.604681 1_2:-55431405 Msa0078130:three_prime_UTR
GGTCCTTCATCTCCTAAACT+GGG 0.608441 1_2:+55434653 None:intergenic
ATTGATGAAGTCCTCGGACA+AGG 0.609342 1_2:+55434319 None:intergenic
TGAAAAGTTGCCGAAAACAA+TGG 0.611156 1_2:-55431800 Msa0078130:CDS
GTTTGATCAACTAAGTTACC+CGG 0.612670 1_2:-55432597 Msa0078130:CDS
TTCCCATGTGAAGCTCGAAG+AGG 0.616466 1_2:-55431988 Msa0078130:intron
GGCGATTGCTGATTGTGAGG+CGG 0.619455 1_2:-55435838 Msa0078130:CDS
AAGAATTCTTCCACAGCTGG+AGG 0.620680 1_2:-55435079 Msa0078130:CDS
GCAAGAAGTGAACCTAGACT+AGG 0.627296 1_2:-55431411 Msa0078130:three_prime_UTR
CTAAACTGGGATGAATTCCA+AGG 0.627945 1_2:+55434666 None:intergenic
GGGAAGGACTGTACTCTTTG+GGG 0.629295 1_2:+55434971 None:intergenic
AAAGAAGAGAACAGAGCTGG+AGG 0.632727 1_2:-55434141 Msa0078130:CDS
CAAATCAGTTTCATCTACAA+GGG 0.635801 1_2:+55434951 None:intergenic
AAAGAGAATTTAAAGTACAC+AGG 0.635916 1_2:+55434723 None:intergenic
ATTACGACAAGAGAAAGAGC+AGG 0.636761 1_2:-55433047 Msa0078130:CDS
AATTAGAATCTCCTCTGACA+AGG 0.638966 1_2:-55431906 Msa0078130:CDS
GATACATTATTAGATGAGAG+GGG 0.640613 1_2:+55431871 None:intergenic
GCTAGTCGAAGAGTCTCCAT+GGG 0.643018 1_2:-55432701 Msa0078130:CDS
AAGCGAGCTGAGAAAGCACG+TGG 0.644154 1_2:-55433657 Msa0078130:CDS
AGAGTGTAAAGAAGGGACCT+AGG 0.646906 1_2:-55432742 Msa0078130:CDS
AAGCCCCAGAGTGTAAAGAA+GGG 0.647810 1_2:-55432749 Msa0078130:CDS
AGTGTCTTGAAGTGTACCGA+AGG 0.648504 1_2:-55435902 Msa0078130:CDS
ACTGTTCAAGCACACATGCA+GGG 0.651011 1_2:+55433937 None:intergenic
ATGCTGTTGAAGGTGTTGCA+GGG 0.651611 1_2:+55431686 None:intergenic
TGACGACGGAACTGGAGTCA+CGG 0.653598 1_2:+55431606 None:intergenic
GCAGGCGATTGCTGATTGTG+AGG 0.655426 1_2:-55435841 Msa0078130:CDS
AGTCGAAGAGTCTCCATGGG+AGG 0.659640 1_2:-55432698 Msa0078130:CDS
TGAACCAAACACCTTGTCCG+AGG 0.667411 1_2:-55434330 Msa0078130:CDS
AATTTGGGACGAAGTTGGCG+AGG 0.668015 1_2:-55435967 Msa0078130:CDS
ACAAATGATAGCAGAACAGG+AGG 0.669454 1_2:-55432801 Msa0078130:CDS
GAAATCAAATGGAGATCGAG+CGG 0.682924 1_2:-55436708 Msa0078130:five_prime_UTR
GGACCTAGGATGTCAACCGG+AGG 0.683788 1_2:-55432728 Msa0078130:CDS
TTGGCTTGAGGAATATAACA+GGG 0.700947 1_2:-55433817 Msa0078130:intron
TAACTTAGTTGATCAAACTG+AGG 0.721798 1_2:+55432602 None:intergenic
ACTCCAACAGTAGCTGACGA+CGG 0.729608 1_2:+55431592 None:intergenic
TCCCTGCAAGGCAATGACTG+CGG 0.734203 1_2:-55431752 Msa0078130:CDS
AGCGAGCTGAGAAAGCACGT+GGG 0.746512 1_2:-55433656 Msa0078130:CDS
ACATTCATAGAAACTGACGA+CGG 0.786540 1_2:+55431631 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTCATTTTTTAACAATTT+TGG - chr1_2:55431619-55431638 Msa0078130:CDS 10.0%
!!! ATTCATTTTTTAACAATTTT+GGG - chr1_2:55431620-55431639 Msa0078130:CDS 10.0%
!! TAGTTAAATAAATTGAATTT+AGG - chr1_2:55431655-55431674 Msa0078130:CDS 10.0%
!! AGTTAAATAAATTGAATTTA+GGG - chr1_2:55431656-55431675 Msa0078130:CDS 10.0%
!!! CTATATTTCTTTATTTTATA+CGG - chr1_2:55433697-55433716 Msa0078130:CDS 10.0%
!!! TTTTTAATTAAAATGGTGTA+CGG + chr1_2:55431197-55431216 None:intergenic 15.0%
!! AAATAGAAAGTTTGTATAAA+AGG + chr1_2:55431505-55431524 None:intergenic 15.0%
!!! AACTTGTTTATTAGATAATT+TGG - chr1_2:55431975-55431994 Msa0078130:CDS 15.0%
!! ACTTGTTTATTAGATAATTT+GGG - chr1_2:55431976-55431995 Msa0078130:CDS 15.0%
!!! CAAAACAAAATTTCTTTTTA+TGG - chr1_2:55432379-55432398 Msa0078130:intron 15.0%
!! CTATAACTAATTACTTATTA+TGG - chr1_2:55433162-55433181 Msa0078130:intron 15.0%
!! AGAAAATTCAAAAAATAAAG+TGG + chr1_2:55433444-55433463 None:intergenic 15.0%
!!! AACAAAATTTTGAAGAAAAA+TGG + chr1_2:55434571-55434590 None:intergenic 15.0%
!!! AAGTATCATTTAATAAGTTT+TGG + chr1_2:55435106-55435125 None:intergenic 15.0%
!!! GTTAATTTGAAAGTAATTTA+AGG + chr1_2:55436716-55436735 None:intergenic 15.0%
!!! CTTTTTCCTTAAAACTAAAA+CGG - chr1_2:55431293-55431312 Msa0078130:three_prime_UTR 20.0%
!! ATGAATTGTAACTCAAATTT+GGG + chr1_2:55431606-55431625 None:intergenic 20.0%
!! AATGAATTGTAACTCAAATT+TGG + chr1_2:55431607-55431626 None:intergenic 20.0%
!!! ACTTTTTCATGTGATTTAAT+TGG - chr1_2:55432350-55432369 Msa0078130:intron 20.0%
!! AGCAAATTATGCATTAAATA+GGG + chr1_2:55432730-55432749 None:intergenic 20.0%
!! TAGCAAATTATGCATTAAAT+AGG + chr1_2:55432731-55432750 None:intergenic 20.0%
!! AGTTGTAAATCATTTATGTT+TGG - chr1_2:55433483-55433502 Msa0078130:intron 20.0%
!!! TCTATCTATTTTAATTTGCA+AGG - chr1_2:55433922-55433941 Msa0078130:CDS 20.0%
!! TTAAGATCTATAAAAATACC+TGG + chr1_2:55434343-55434362 None:intergenic 20.0%
!! ATATTCTTAATATTCAGCAA+AGG - chr1_2:55434453-55434472 Msa0078130:intron 20.0%
!! ACCATTCCTATATATAAAAA+GGG + chr1_2:55434659-55434678 None:intergenic 20.0%
!! TACCATTCCTATATATAAAA+AGG + chr1_2:55434660-55434679 None:intergenic 20.0%
!!! CTATTGATTCAAAAGAAAAT+TGG - chr1_2:55435596-55435615 Msa0078130:intron 20.0%
!! ATAAGAAGAGAAAATAAATG+TGG + chr1_2:55435628-55435647 None:intergenic 20.0%
!! AATCATAAGTCAATTGTAAT+TGG - chr1_2:55436505-55436524 Msa0078130:intron 20.0%
!! AATTTGAAAGTAATTTAAGG+AGG + chr1_2:55436713-55436732 None:intergenic 20.0%
! AAATGTGAATCGAAATCAAA+TGG - chr1_2:55431239-55431258 Msa0078130:three_prime_UTR 25.0%
!!! CGTTTTAGTTTTAAGGAAAA+AGG + chr1_2:55431295-55431314 None:intergenic 25.0%
!! CTTCATTTCTTTTCCTAAAT+AGG - chr1_2:55431418-55431437 Msa0078130:three_prime_UTR 25.0%
! TGAATATAGTTAAGATTCGT+GGG + chr1_2:55431468-55431487 None:intergenic 25.0%
! TTGAATATAGTTAAGATTCG+TGG + chr1_2:55431469-55431488 None:intergenic 25.0%
! TGAATTGTAACTCAAATTTG+GGG + chr1_2:55431605-55431624 None:intergenic 25.0%
!!! AATTTTGAAGTGATTGTGTT+TGG - chr1_2:55431783-55431802 Msa0078130:CDS 25.0%
!!! CAATCTGCTCATTTTTTAAA+GGG + chr1_2:55432444-55432463 None:intergenic 25.0%
! AAATATGTTCTGCTAGAATA+GGG + chr1_2:55432470-55432489 None:intergenic 25.0%
!!! ATGGAAAGTTGATATGTAAT+TGG - chr1_2:55432617-55432636 Msa0078130:CDS 25.0%
!! TATTGAGTTAGAGTACTAAT+TGG - chr1_2:55432786-55432805 Msa0078130:CDS 25.0%
! AAATGCACTTCAAAATGAAA+AGG - chr1_2:55433065-55433084 Msa0078130:CDS 25.0%
! TGATGAAACAGAAAAAATGA+TGG + chr1_2:55433109-55433128 None:intergenic 25.0%
!! AAAGAGAATTTAAAGTACAC+AGG + chr1_2:55433238-55433257 None:intergenic 25.0%
!!! TTTAATTTGCAAGGTTTTTC+TGG - chr1_2:55433931-55433950 Msa0078130:CDS 25.0%
! TGAAAAAATGGAAGTCAAAA+TGG + chr1_2:55434184-55434203 None:intergenic 25.0%
! TATGAGTATGACTGAAAAAA+TGG + chr1_2:55434196-55434215 None:intergenic 25.0%
! TAATTGTTACGCATATGTTA+TGG - chr1_2:55434360-55434379 Msa0078130:CDS 25.0%
! AATAGTTCCAAAATCAAGAA+TGG - chr1_2:55434506-55434525 Msa0078130:intron 25.0%
! ATAGTTCCAAAATCAAGAAT+GGG - chr1_2:55434507-55434526 Msa0078130:intron 25.0%
!! AATTATCCCATTCTTGATTT+TGG + chr1_2:55434516-55434535 None:intergenic 25.0%
! TGGGATAATTAACAATAGTT+TGG - chr1_2:55434526-55434545 Msa0078130:intron 25.0%
! CATTCCTATATATAAAAAGG+GGG + chr1_2:55434657-55434676 None:intergenic 25.0%
! CCATTCCTATATATAAAAAG+GGG + chr1_2:55434658-55434677 None:intergenic 25.0%
!! ACTTGTTAACTATTATTAGC+TGG - chr1_2:55434801-55434820 Msa0078130:intron 25.0%
! TCTAAAAAACCAAAAAAGGA+CGG + chr1_2:55434857-55434876 None:intergenic 25.0%
! CGAATCTAAAAAACCAAAAA+AGG + chr1_2:55434861-55434880 None:intergenic 25.0%
!! TCCTCTTATTTCATTTGAAT+AGG - chr1_2:55434957-55434976 Msa0078130:CDS 25.0%
! AAAACTCTTATTACTTAGCA+AGG + chr1_2:55435458-55435477 None:intergenic 25.0%
! AAAAAGATCATAGATCAATC+AGG - chr1_2:55435502-55435521 Msa0078130:intron 25.0%
!! TTTCTTTTGAATCAATAGTC+TGG + chr1_2:55435594-55435613 None:intergenic 25.0%
! ATTACTTAAGAGGAAAATGT+TGG - chr1_2:55435764-55435783 Msa0078130:intron 25.0%
! TATGACTCTTTGTACAATTT+AGG + chr1_2:55435845-55435864 None:intergenic 25.0%
! TGATACATTATTAGATGAGA+GGG + chr1_2:55436091-55436110 None:intergenic 25.0%
! ATGATACATTATTAGATGAG+AGG + chr1_2:55436092-55436111 None:intergenic 25.0%
!! ACTTATTGATGAGATTTTTG+TGG - chr1_2:55436581-55436600 Msa0078130:five_prime_UTR 25.0%
! CAATAATTCTTCATATAGGT+GGG + chr1_2:55436677-55436696 None:intergenic 25.0%
! ACAATAATTCTTCATATAGG+TGG + chr1_2:55436678-55436697 None:intergenic 25.0%
! ACGACAATAATTCTTCATAT+AGG + chr1_2:55436681-55436700 None:intergenic 25.0%
TAATTAAAATGGTGTACGGA+CGG + chr1_2:55431193-55431212 None:intergenic 30.0%
!!! ATGTAGCCGTTTTAGTTTTA+AGG + chr1_2:55431302-55431321 None:intergenic 30.0%
TAATGTGTGATTGAGAGAAA+TGG + chr1_2:55431556-55431575 None:intergenic 30.0%
AATTGTAACTCAAATTTGGG+GGG + chr1_2:55431603-55431622 None:intergenic 30.0%
GAATTGTAACTCAAATTTGG+GGG + chr1_2:55431604-55431623 None:intergenic 30.0%
ACACATTTAAGCGATTAAAG+AGG + chr1_2:55431717-55431736 None:intergenic 30.0%
CTTTAATCGCTTAAATGTGT+TGG - chr1_2:55431717-55431736 Msa0078130:CDS 30.0%
! ATAAGTCTAGAGCTCAATTA+AGG - chr1_2:55432095-55432114 Msa0078130:intron 30.0%
! TGTTTGTTACCTGAATACAA+TGG - chr1_2:55432240-55432259 Msa0078130:intron 30.0%
CGTTCTAACAAAATACCTAA+GGG + chr1_2:55432420-55432439 None:intergenic 30.0%
TCGTTCTAACAAAATACCTA+AGG + chr1_2:55432421-55432440 None:intergenic 30.0%
!!! GCAATCTGCTCATTTTTTAA+AGG + chr1_2:55432445-55432464 None:intergenic 30.0%
GAAATATGTTCTGCTAGAAT+AGG + chr1_2:55432471-55432490 None:intergenic 30.0%
AGAACATATTTCACAATCCT+GGG - chr1_2:55432479-55432498 Msa0078130:intron 30.0%
CTCACTAATAACAGATCAAA+GGG - chr1_2:55432510-55432529 Msa0078130:intron 30.0%
TTGGACCATATACTATTACA+AGG - chr1_2:55432571-55432590 Msa0078130:CDS 30.0%
TGTCTCCTTGTAATAGTATA+TGG + chr1_2:55432579-55432598 None:intergenic 30.0%
CTTTCCATTTGAATTAGCAA+CGG + chr1_2:55432605-55432624 None:intergenic 30.0%
AACTCAATAACATGTTCTCT+TGG + chr1_2:55432775-55432794 None:intergenic 30.0%
! AGTTAGAGTACTAATTGGAT+TGG - chr1_2:55432791-55432810 Msa0078130:CDS 30.0%
CAAATCAGTTTCATCTACAA+GGG + chr1_2:55433010-55433029 None:intergenic 30.0%
ACAAATCAGTTTCATCTACA+AGG + chr1_2:55433011-55433030 None:intergenic 30.0%
!! CAAATCTTCAAGTTTTCTCA+GGG + chr1_2:55433034-55433053 None:intergenic 30.0%
!! ACAGAAAAAATGATGGATAG+TGG + chr1_2:55433102-55433121 None:intergenic 30.0%
! AATTCTCTTTGTTTAGTGCT+CGG - chr1_2:55433248-55433267 Msa0078130:CDS 30.0%
GTATCATTACTTACACTCTT+AGG + chr1_2:55433329-55433348 None:intergenic 30.0%
TAAATTACAGAGAATGCAGA+AGG - chr1_2:55433391-55433410 Msa0078130:intron 30.0%
GATTTACAACTATCAACCAA+GGG + chr1_2:55433474-55433493 None:intergenic 30.0%
TGATTTACAACTATCAACCA+AGG + chr1_2:55433475-55433494 None:intergenic 30.0%
! TTCAGTTATTTCATCTTCTG+AGG + chr1_2:55433612-55433631 None:intergenic 30.0%
CAAGTTGCTTGAGTATAATA+TGG - chr1_2:55433673-55433692 Msa0078130:CDS 30.0%
GTTAAAATCCAGCAAAATGA+AGG - chr1_2:55433784-55433803 Msa0078130:intron 30.0%
! CATTTAGTTCCAGAAATAGA+TGG - chr1_2:55433857-55433876 Msa0078130:CDS 30.0%
TCGAAAAGACATACTTGAAA+AGG - chr1_2:55434084-55434103 Msa0078130:CDS 30.0%
TACTTGAAAAGGTTGAGAAA+TGG - chr1_2:55434095-55434114 Msa0078130:CDS 30.0%
! GTTCATTTTGTTCATTTTCC+AGG - chr1_2:55434234-55434253 Msa0078130:intron 30.0%
AATCAGACACTTGTGAATAA+AGG + chr1_2:55434421-55434440 None:intergenic 30.0%
! TGATCCCCCTTTTTATATAT+AGG - chr1_2:55434650-55434669 Msa0078130:CDS 30.0%
! CCCCTTTTTATATATAGGAA+TGG - chr1_2:55434655-55434674 Msa0078130:CDS 30.0%
TGACTTCAAAAACTATAGCA+TGG - chr1_2:55434687-55434706 Msa0078130:CDS 30.0%
GACTTCAAAAACTATAGCAT+GGG - chr1_2:55434688-55434707 Msa0078130:CDS 30.0%
AAAAACTATAGCATGGGAAA+AGG - chr1_2:55434694-55434713 Msa0078130:CDS 30.0%
!!! AAAATGATTCCGTCCTTTTT+TGG - chr1_2:55434845-55434864 Msa0078130:intron 30.0%
GCCTATTCAAATGAAATAAG+AGG + chr1_2:55434961-55434980 None:intergenic 30.0%
! ATGTCTGAGACAATATACTA+GGG + chr1_2:55435010-55435029 None:intergenic 30.0%
! AATGTCTGAGACAATATACT+AGG + chr1_2:55435011-55435030 None:intergenic 30.0%
TAGTATATTGTCTCAGACAT+TGG - chr1_2:55435010-55435029 Msa0078130:CDS 30.0%
AGTATATTGTCTCAGACATT+GGG - chr1_2:55435011-55435030 Msa0078130:CDS 30.0%
CAGATAAATAAAATGTTGCC+TGG + chr1_2:55435046-55435065 None:intergenic 30.0%
TACACACAACATCTATTTGT+TGG + chr1_2:55435077-55435096 None:intergenic 30.0%
! AAATGATACTTTTCTGTTGC+AGG - chr1_2:55435115-55435134 Msa0078130:CDS 30.0%
TAACTTAGTTGATCAAACTG+AGG + chr1_2:55435359-55435378 None:intergenic 30.0%
!! TGCTTTTGGTTATACTTTTG+TGG - chr1_2:55435423-55435442 Msa0078130:intron 30.0%
!!! ATGATCTTTTTGAGTCAAAC+AGG + chr1_2:55435493-55435512 None:intergenic 30.0%
TAGATACACTAGTCAAAAGT+TGG + chr1_2:55435719-55435738 None:intergenic 30.0%
!! GTTAGAGTTCTAAATCCATA+TGG + chr1_2:55435927-55435946 None:intergenic 30.0%
TTCACATGGGAAAAAAAGAA+AGG + chr1_2:55435962-55435981 None:intergenic 30.0%
GATACATTATTAGATGAGAG+GGG + chr1_2:55436090-55436109 None:intergenic 30.0%
AGCATCAATTCCTATGAATA+TGG - chr1_2:55436290-55436309 Msa0078130:intron 30.0%
CAAAGGAATATTCAATCTCT+TGG + chr1_2:55436410-55436429 None:intergenic 30.0%
AGAGATTGAATATTCCTTTG+AGG - chr1_2:55436410-55436429 Msa0078130:intron 30.0%
! AATATTCCTTTGAGGAAAGA+CGG - chr1_2:55436418-55436437 Msa0078130:intron 30.0%
GTTAGCATGATTACTTTGTT+TGG - chr1_2:55436455-55436474 Msa0078130:intron 30.0%
TTCTTTCTGATTGTTTCATC+TGG - chr1_2:55436628-55436647 Msa0078130:five_prime_UTR 30.0%
AATTAAAATGGTGTACGGAC+GGG + chr1_2:55431192-55431211 None:intergenic 35.0%
! CGAAATGTACTGACCTATTT+AGG + chr1_2:55431434-55431453 None:intergenic 35.0%
CAATCACTTCAAAATTCAGC+TGG + chr1_2:55431779-55431798 None:intergenic 35.0%
AAGAGATCCACAAGTTGTTT+CGG + chr1_2:55431849-55431868 None:intergenic 35.0%
ATCTCTTCTGTATGAACTTC+AGG - chr1_2:55431862-55431881 Msa0078130:CDS 35.0%
! TAGATAATTTGGGACGAAGT+TGG - chr1_2:55431986-55432005 Msa0078130:intron 35.0%
CTACTTAAACAATGCCTTGA+GGG + chr1_2:55432310-55432329 None:intergenic 35.0%
ACTACTTAAACAATGCCTTG+AGG + chr1_2:55432311-55432330 None:intergenic 35.0%
ATTCTTGAAACAATGCCCTT+AGG - chr1_2:55432402-55432421 Msa0078130:intron 35.0%
CAGAACATATTTCACAATCC+TGG - chr1_2:55432478-55432497 Msa0078130:intron 35.0%
GCTCACTAATAACAGATCAA+AGG - chr1_2:55432509-55432528 Msa0078130:intron 35.0%
AATTGTTTACCACGTGAATG+TGG + chr1_2:55432553-55432572 None:intergenic 35.0%
ACATTCACGTGGTAAACAAT+TGG - chr1_2:55432552-55432571 Msa0078130:intron 35.0%
ATTGCCGTTGCTAATTCAAA+TGG - chr1_2:55432598-55432617 Msa0078130:CDS 35.0%
! GGAGATGAAAAAGCATAAGT+TGG - chr1_2:55432900-55432919 Msa0078130:intron 35.0%
! TGAAAAAGCATAAGTTGGAG+CGG - chr1_2:55432905-55432924 Msa0078130:intron 35.0%
AGCCTCTCAATGGAAATTTA+TGG - chr1_2:55432964-55432983 Msa0078130:intron 35.0%
!! GCAAATCTTCAAGTTTTCTC+AGG + chr1_2:55433035-55433054 None:intergenic 35.0%
! TTCGTTCTTTTCATGCAGAT+TGG - chr1_2:55433188-55433207 Msa0078130:intron 35.0%
! TCGTTCTTTTCATGCAGATT+GGG - chr1_2:55433189-55433208 Msa0078130:intron 35.0%
CTGCTGTTATACAACAACTA+CGG - chr1_2:55433363-55433382 Msa0078130:intron 35.0%
TGCTGTTATACAACAACTAC+GGG - chr1_2:55433364-55433383 Msa0078130:intron 35.0%
! GAATTTTCTGTTCTTTCCCT+TGG - chr1_2:55433455-55433474 Msa0078130:intron 35.0%
!! AAGAAGTATTAATGCCATGC+AGG - chr1_2:55433733-55433752 Msa0078130:intron 35.0%
ACCAGATTCTATAGCTTCAA+CGG + chr1_2:55433897-55433916 None:intergenic 35.0%
! CAAAGCTTCCTCTTTAACTT+GGG + chr1_2:55434062-55434081 None:intergenic 35.0%
CAAGTTAAAGAGGAAGCTTT+GGG - chr1_2:55434061-55434080 Msa0078130:intron 35.0%
TGAAAAGGTTGAGAAATGGT+TGG - chr1_2:55434099-55434118 Msa0078130:CDS 35.0%
! TTGGCTTGAGGAATATAACA+GGG - chr1_2:55434141-55434160 Msa0078130:CDS 35.0%
! CATTATATCGATTGTCATCC+TGG + chr1_2:55434255-55434274 None:intergenic 35.0%
GATGACAATCGATATAATGC+TGG - chr1_2:55434256-55434275 Msa0078130:intron 35.0%
AATCGATATAATGCTGGAAG+AGG - chr1_2:55434262-55434281 Msa0078130:intron 35.0%
GATTACAAATGAAGTCACAG+TGG + chr1_2:55434594-55434613 None:intergenic 35.0%
AAATAATGGTGTAGATGGCT+TGG + chr1_2:55434619-55434638 None:intergenic 35.0%
TGCGTAAATAATGGTGTAGA+TGG + chr1_2:55434624-55434643 None:intergenic 35.0%
TCTACACCATTATTTACGCA+TGG - chr1_2:55434624-55434643 Msa0078130:CDS 35.0%
TCACAACCATGCGTAAATAA+TGG + chr1_2:55434633-55434652 None:intergenic 35.0%
ATAGCATGGGAAAAGGAAAA+AGG - chr1_2:55434701-55434720 Msa0078130:CDS 35.0%
GGTTTCGAATTCACATATGA+TGG - chr1_2:55434722-55434741 Msa0078130:CDS 35.0%
! GTAGCTTTTGAATCAGGTTT+TGG + chr1_2:55435302-55435321 None:intergenic 35.0%
! GAATGAGTAGCTTTTGAATC+AGG + chr1_2:55435308-55435327 None:intergenic 35.0%
GTTTGATCAACTAAGTTACC+CGG - chr1_2:55435361-55435380 Msa0078130:intron 35.0%
AAACAAGAAACACCATCATC+CGG + chr1_2:55435383-55435402 None:intergenic 35.0%
! GGTGTTTCTTGTTTATCATC+AGG - chr1_2:55435389-55435408 Msa0078130:intron 35.0%
! AGGTAGTTTAACTCTGCTTT+TGG - chr1_2:55435409-55435428 Msa0078130:intron 35.0%
GCATGAGTGAATTACTTAAG+AGG - chr1_2:55435754-55435773 Msa0078130:intron 35.0%
AGTGAATGTGTGAATGAGTT+GGG + chr1_2:55435884-55435903 None:intergenic 35.0%
CAGAGGAGATTCTAATTCAT+AGG + chr1_2:55436049-55436068 None:intergenic 35.0%
AATTAGAATCTCCTCTGACA+AGG - chr1_2:55436052-55436071 Msa0078130:intron 35.0%
TGAAAAGTTGCCGAAAACAA+TGG - chr1_2:55436158-55436177 Msa0078130:intron 35.0%
ATAGGAATTGATGCTGTTGA+AGG + chr1_2:55436285-55436304 None:intergenic 35.0%
ACATTCATAGAAACTGACGA+CGG + chr1_2:55436330-55436349 None:intergenic 35.0%
GAATATTCAATCTCTTGGAC+TGG + chr1_2:55436405-55436424 None:intergenic 35.0%
TTCTTGCAATGTACACAATC+AGG + chr1_2:55436534-55436553 None:intergenic 35.0%
CTGATTGTTTCATCTGGAAA+TGG - chr1_2:55436634-55436653 Msa0078130:five_prime_UTR 35.0%
GAAATCAAATGGAGATCGAG+CGG - chr1_2:55431250-55431269 Msa0078130:three_prime_UTR 40.0%
TTAAGATTCGTGGGAATCTG+AGG + chr1_2:55431459-55431478 None:intergenic 40.0%
AACAGCATTCTGTCTCTATC+AGG + chr1_2:55432022-55432041 None:intergenic 40.0%
GCACTTCTTCCATTGTATTC+AGG + chr1_2:55432252-55432271 None:intergenic 40.0%
GTTACTAACAAGTTCCCTCA+AGG - chr1_2:55432293-55432312 Msa0078130:intron 40.0%
TACAGTGAGTTCGCTATCTA+TGG + chr1_2:55432662-55432681 None:intergenic 40.0%
ACGCAACATTGATGTGGATA+TGG + chr1_2:55432695-55432714 None:intergenic 40.0%
TATCAGACGCAACATTGATG+TGG + chr1_2:55432701-55432720 None:intergenic 40.0%
TTCTAGTCCGATCAAAATGC+TGG - chr1_2:55432835-55432854 Msa0078130:intron 40.0%
TTCTTGCATACTCTTCCTTC+AGG + chr1_2:55432864-55432883 None:intergenic 40.0%
GGCCATAAATTTCCATTGAG+AGG + chr1_2:55432969-55432988 None:intergenic 40.0%
TCAGTTTCATCTACAAGGGA+AGG + chr1_2:55433006-55433025 None:intergenic 40.0%
CTAAACTGGGATGAATTCCA+AGG + chr1_2:55433295-55433314 None:intergenic 40.0%
CTTGGAATTCATCCCAGTTT+AGG - chr1_2:55433293-55433312 Msa0078130:intron 40.0%
TAATGATACCATCCAGCAAC+TGG - chr1_2:55433340-55433359 Msa0078130:intron 40.0%
! GCATTGTTGTTGCAAGATCT+TGG + chr1_2:55433514-55433533 None:intergenic 40.0%
AGATCTTGCAACAACAATGC+TGG - chr1_2:55433514-55433533 Msa0078130:intron 40.0%
CTTCAATAGGTGTATCCATC+AGG + chr1_2:55433550-55433569 None:intergenic 40.0%
AACATCTGCTGCTCTTCAAT+AGG + chr1_2:55433563-55433582 None:intergenic 40.0%
AAGTATTAATGCCATGCAGG+TGG - chr1_2:55433736-55433755 Msa0078130:intron 40.0%
CCAAAGCTTCCTCTTTAACT+TGG + chr1_2:55434063-55434082 None:intergenic 40.0%
CCAAGTTAAAGAGGAAGCTT+TGG - chr1_2:55434060-55434079 Msa0078130:intron 40.0%
CAGCATGTAATGAAGAGTCT+TGG - chr1_2:55434122-55434141 Msa0078130:CDS 40.0%
! TAATGAAGAGTCTTGGCTTG+AGG - chr1_2:55434129-55434148 Msa0078130:CDS 40.0%
! CTTGGCTTGAGGAATATAAC+AGG - chr1_2:55434140-55434159 Msa0078130:CDS 40.0%
!! GGGTTGGTTAACAAAATTCC+AGG - chr1_2:55434322-55434341 Msa0078130:CDS 40.0%
ATTACGACAAGAGAAAGAGC+AGG - chr1_2:55434911-55434930 Msa0078130:CDS 40.0%
ACAAATGATAGCAGAACAGG+AGG - chr1_2:55435157-55435176 Msa0078130:intron 40.0%
CACTTTGTCAACCTTTCTCA+CGG + chr1_2:55435336-55435355 None:intergenic 40.0%
AACAAGAAACACCATCATCC+GGG + chr1_2:55435382-55435401 None:intergenic 40.0%
CATAGATCAATCAGGTCTCT+TGG - chr1_2:55435510-55435529 Msa0078130:intron 40.0%
GTCTTCCTCAATGACTGATA+TGG + chr1_2:55435790-55435809 None:intergenic 40.0%
ACATCAACTGCTGATATAGC+TGG - chr1_2:55435808-55435827 Msa0078130:CDS 40.0%
GAGTGAATGTGTGAATGAGT+TGG + chr1_2:55435885-55435904 None:intergenic 40.0%
TTAGATGAGAGGGGAGAAAA+AGG + chr1_2:55436081-55436100 None:intergenic 40.0%
! GTTTTCGGCAACTTTTCACT+CGG + chr1_2:55436156-55436175 None:intergenic 40.0%
! ATAGGAATAGGCACTGTCTT+TGG + chr1_2:55436252-55436271 None:intergenic 40.0%
GTCGTCAGTTTCTATGAATG+TGG - chr1_2:55436329-55436348 Msa0078130:intron 40.0%
! GGAAATGGTCTTAGCTGTAT+TGG - chr1_2:55436649-55436668 Msa0078130:five_prime_UTR 40.0%
! AGTTGTTTCGGCTTGCGAAA+GGG + chr1_2:55431837-55431856 None:intergenic 45.0%
! AAGTTGTTTCGGCTTGCGAA+AGG + chr1_2:55431838-55431857 None:intergenic 45.0%
AGTGTCTTGAAGTGTACCGA+AGG - chr1_2:55432056-55432075 Msa0078130:intron 45.0%
TCTTGAAGTGTACCGAAGGA+AGG - chr1_2:55432060-55432079 Msa0078130:intron 45.0%
! GTCTAGAGCTCAATTAAGGC+AGG - chr1_2:55432099-55432118 Msa0078130:intron 45.0%
TGCAGCTATCTGTTCTGCAA+TGG - chr1_2:55432147-55432166 Msa0078130:intron 45.0%
GCAGCTATCTGTTCTGCAAT+GGG - chr1_2:55432148-55432167 Msa0078130:intron 45.0%
CTAACCTGTCTAATGTGCAC+AGG + chr1_2:55432181-55432200 None:intergenic 45.0%
ATTAGTGAGCTATCTCTCCC+AGG + chr1_2:55432499-55432518 None:intergenic 45.0%
TCGATTCATCCACATTCACG+TGG - chr1_2:55432541-55432560 Msa0078130:intron 45.0%
!! CAGGCTTCCAGCATTTTGAT+CGG + chr1_2:55432845-55432864 None:intergenic 45.0%
TCAAAATGCTGGAAGCCTGA+AGG - chr1_2:55432846-55432865 Msa0078130:intron 45.0%
TGCAAGAATTCTTCCACAGC+TGG - chr1_2:55432876-55432895 Msa0078130:intron 45.0%
AAGAATTCTTCCACAGCTGG+AGG - chr1_2:55432879-55432898 Msa0078130:intron 45.0%
! TTTTTCATCTCCTCCAGCTG+TGG + chr1_2:55432892-55432911 None:intergenic 45.0%
GCAGATTCAAAGCCTCTCAA+TGG - chr1_2:55432954-55432973 Msa0078130:intron 45.0%
AGGGAAGGACTGTACTCTTT+GGG + chr1_2:55432991-55433010 None:intergenic 45.0%
AAGGGAAGGACTGTACTCTT+TGG + chr1_2:55432992-55433011 None:intergenic 45.0%
GACTTTAAGCAGACAGTCCT+TGG - chr1_2:55433275-55433294 Msa0078130:CDS 45.0%
CATCCCAGTTTAGGAGATGA+AGG - chr1_2:55433302-55433321 Msa0078130:intron 45.0%
GGTCCTTCATCTCCTAAACT+GGG + chr1_2:55433308-55433327 None:intergenic 45.0%
AGGTCCTTCATCTCCTAAAC+TGG + chr1_2:55433309-55433328 None:intergenic 45.0%
ATTGATGAAGTCCTCGGACA+AGG + chr1_2:55433642-55433661 None:intergenic 45.0%
CACGCAATTGATGAAGTCCT+CGG + chr1_2:55433648-55433667 None:intergenic 45.0%
TATTAATGCCATGCAGGTGG+AGG - chr1_2:55433739-55433758 Msa0078130:intron 45.0%
! CACAAGCTCCTTCATTTTGC+TGG + chr1_2:55433795-55433814 None:intergenic 45.0%
GCTAAAGAAGAGAACAGAGC+TGG - chr1_2:55433814-55433833 Msa0078130:intron 45.0%
AAAGAAGAGAACAGAGCTGG+AGG - chr1_2:55433817-55433836 Msa0078130:intron 45.0%
TCGACTGCACCATCTATTTC+TGG + chr1_2:55433869-55433888 None:intergenic 45.0%
GCCGTTGAAGCTATAGAATC+TGG - chr1_2:55433893-55433912 Msa0078130:CDS 45.0%
CAATTCCTGCATCAAGGAAC+AGG + chr1_2:55433997-55434016 None:intergenic 45.0%
GTTCCTTGATGCAGGAATTG+TGG - chr1_2:55433997-55434016 Msa0078130:intron 45.0%
ACTGTTCAAGCACACATGCA+GGG + chr1_2:55434024-55434043 None:intergenic 45.0%
AACTGTTCAAGCACACATGC+AGG + chr1_2:55434025-55434044 None:intergenic 45.0%
GACATTGGGTTTCGTAATCC+AGG - chr1_2:55435025-55435044 Msa0078130:CDS 45.0%
TTTGTCCCTGAAGCTTCTTC+AGG + chr1_2:55435142-55435161 None:intergenic 45.0%
GGGACAAATGATAGCAGAAC+AGG - chr1_2:55435154-55435173 Msa0078130:intron 45.0%
!! TTACACTCTGGGGCTTTGAT+GGG + chr1_2:55435205-55435224 None:intergenic 45.0%
!! TTTACACTCTGGGGCTTTGA+TGG + chr1_2:55435206-55435225 None:intergenic 45.0%
AAAGCCCCAGAGTGTAAAGA+AGG - chr1_2:55435208-55435227 Msa0078130:intron 45.0%
AAGCCCCAGAGTGTAAAGAA+GGG - chr1_2:55435209-55435228 Msa0078130:intron 45.0%
AGGTCCCTTCTTTACACTCT+GGG + chr1_2:55435216-55435235 None:intergenic 45.0%
TAGGTCCCTTCTTTACACTC+TGG + chr1_2:55435217-55435236 None:intergenic 45.0%
AGAGTGTAAAGAAGGGACCT+AGG - chr1_2:55435216-55435235 Msa0078130:intron 45.0%
CAACTAAGTTACCCGGATGA+TGG - chr1_2:55435368-55435387 Msa0078130:intron 45.0%
! CAATCAGGTCTCTTGGTTTG+TGG - chr1_2:55435517-55435536 Msa0078130:intron 45.0%
!! CTCTTGGTTTGTGGCTAAAG+TGG - chr1_2:55435526-55435545 Msa0078130:intron 45.0%
GTTTGTGGCTAAAGTGGCAA+GGG - chr1_2:55435532-55435551 Msa0078130:intron 45.0%
TTTGTGGCTAAAGTGGCAAG+GGG - chr1_2:55435533-55435552 Msa0078130:intron 45.0%
TTCACTCATGCTCATGTCAG+AGG + chr1_2:55435745-55435764 None:intergenic 45.0%
GTTGGCCATATCAGTCATTG+AGG - chr1_2:55435782-55435801 Msa0078130:intron 45.0%
GCACATTCTCGTGTACCATA+TGG - chr1_2:55435909-55435928 Msa0078130:CDS 45.0%
GAAGAGGACTGGATATTGCT+GGG - chr1_2:55435986-55436005 Msa0078130:intron 45.0%
!!! CCAAGTGAGTGCTTTTTTGC+AGG + chr1_2:55436015-55436034 None:intergenic 45.0%
!! CCTGCAAAAAAGCACTCACT+TGG - chr1_2:55436012-55436031 Msa0078130:intron 45.0%
GAAAAAGGTTGCCTTGTCAG+AGG + chr1_2:55436066-55436085 None:intergenic 45.0%
!! ATGCTGTTGAAGGTGTTGCA+GGG + chr1_2:55436275-55436294 None:intergenic 45.0%
GGAGTCATGGCCATATTCAT+AGG + chr1_2:55436303-55436322 None:intergenic 45.0%
ATAGAAACTGACGACGGAAC+TGG + chr1_2:55436324-55436343 None:intergenic 45.0%
GCAAGAAGTGAACCTAGACT+AGG - chr1_2:55436547-55436566 Msa0078130:five_prime_UTR 45.0%
AGTGAACCTAGACTAGGATG+TGG - chr1_2:55436553-55436572 Msa0078130:five_prime_UTR 45.0%
TCTGTTCCACATCCTAGTCT+AGG + chr1_2:55436562-55436581 None:intergenic 45.0%
!!! AGTATTTTTTTTAATTAAAA+TGG + chr1_2:55431204-55431223 None:intergenic 5.0%
!!! CGAGCGGTTTTGAACGTCAA+CGG - chr1_2:55431266-55431285 Msa0078130:three_prime_UTR 50.0%
! TGCGAAAGGGGATCGTTTTG+AGG + chr1_2:55431824-55431843 None:intergenic 50.0%
! GTTGTTTCGGCTTGCGAAAG+GGG + chr1_2:55431836-55431855 None:intergenic 50.0%
TCGCAAGCCGAAACAACTTG+TGG - chr1_2:55431839-55431858 Msa0078130:CDS 50.0%
! AATTTGGGACGAAGTTGGCG+AGG - chr1_2:55431991-55432010 Msa0078130:intron 50.0%
GGGAAGGACTGTACTCTTTG+GGG + chr1_2:55432990-55433009 None:intergenic 50.0%
GGTGCTCTTGAACCGTCTTT+AGG + chr1_2:55433217-55433236 None:intergenic 50.0%
GTATAACAGCAGCCAGTTGC+TGG + chr1_2:55433355-55433374 None:intergenic 50.0%
CAACAACAATGCTGGAGCTC+TGG - chr1_2:55433522-55433541 Msa0078130:intron 50.0%
TGAACCAAACACCTTGTCCG+AGG - chr1_2:55433628-55433647 Msa0078130:intron 50.0%
! AAGTCCTCGGACAAGGTGTT+TGG + chr1_2:55433635-55433654 None:intergenic 50.0%
! AGGTGGAGGTCGAAGTATCT+AGG - chr1_2:55433753-55433772 Msa0078130:intron 50.0%
GGTCCACAATTCCTGCATCA+AGG + chr1_2:55434003-55434022 None:intergenic 50.0%
!! CCTCTTTAACTTGGGCAACC+TGG + chr1_2:55434054-55434073 None:intergenic 50.0%
CCAGGTTGCCCAAGTTAAAG+AGG - chr1_2:55434051-55434070 Msa0078130:intron 50.0%
AGAAAGAGCAGGAACGTCGT+AGG - chr1_2:55434922-55434941 Msa0078130:CDS 50.0%
CAGGACCTGAAGAAGCTTCA+GGG - chr1_2:55435134-55435153 Msa0078130:intron 50.0%
!! GCAGAACAGGAGGCACTATA+TGG - chr1_2:55435167-55435186 Msa0078130:intron 50.0%
GGTCCCTTCTTTACACTCTG+GGG + chr1_2:55435215-55435234 None:intergenic 50.0%
AAGGGACCTAGGATGTCAAC+CGG - chr1_2:55435227-55435246 Msa0078130:intron 50.0%
AGCTAGTCGAAGAGTCTCCA+TGG - chr1_2:55435256-55435275 Msa0078130:intron 50.0%
GCTAGTCGAAGAGTCTCCAT+GGG - chr1_2:55435257-55435276 Msa0078130:intron 50.0%
!! TTGAAGCATTGCTCCTCCCA+TGG + chr1_2:55435276-55435295 None:intergenic 50.0%
TCATTCACGTGCCGTGAGAA+AGG - chr1_2:55435322-55435341 Msa0078130:intron 50.0%
GGTTTGTGGCTAAAGTGGCA+AGG - chr1_2:55435531-55435550 Msa0078130:intron 50.0%
! GGTGGGGATAGGTTTTCTCT+AGG - chr1_2:55435567-55435586 Msa0078130:intron 50.0%
TTCCCATGTGAAGCTCGAAG+AGG - chr1_2:55435970-55435989 Msa0078130:CDS 50.0%
GTCCTCTTCGAGCTTCACAT+GGG + chr1_2:55435975-55435994 None:intergenic 50.0%
AGTCCTCTTCGAGCTTCACA+TGG + chr1_2:55435976-55435995 None:intergenic 50.0%
ATGTGAAGCTCGAAGAGGAC+TGG - chr1_2:55435975-55435994 Msa0078130:intron 50.0%
CGAAGAGGACTGGATATTGC+TGG - chr1_2:55435985-55436004 Msa0078130:intron 50.0%
GCCTTGCAGGGACTAACAAA+GGG + chr1_2:55436198-55436217 None:intergenic 50.0%
TGCCTTGCAGGGACTAACAA+AGG + chr1_2:55436199-55436218 None:intergenic 50.0%
! GGTGTTGCAGGGATAGGAAT+AGG + chr1_2:55436264-55436283 None:intergenic 50.0%
!! GTTGAAGGTGTTGCAGGGAT+AGG + chr1_2:55436270-55436289 None:intergenic 50.0%
!! GATGCTGTTGAAGGTGTTGC+AGG + chr1_2:55436276-55436295 None:intergenic 50.0%
ACTCCAACAGTAGCTGACGA+CGG + chr1_2:55436369-55436388 None:intergenic 50.0%
GTACCGAAGGAAGGTCGATC+AGG - chr1_2:55432069-55432088 Msa0078130:intron 55.0%
TCGCCTGATCGACCTTCCTT+CGG + chr1_2:55432075-55432094 None:intergenic 55.0%
! GCAGGCGATTGCTGATTGTG+AGG - chr1_2:55432117-55432136 Msa0078130:intron 55.0%
! GGCGATTGCTGATTGTGAGG+CGG - chr1_2:55432120-55432139 Msa0078130:intron 55.0%
GCGACCTGTGCACATTAGAC+AGG - chr1_2:55432174-55432193 Msa0078130:intron 55.0%
GCAGATTGGGCGCCTAAAGA+CGG - chr1_2:55433202-55433221 Msa0078130:intron 55.0%
AACAGCAGCCAGTTGCTGGA+TGG + chr1_2:55433351-55433370 None:intergenic 55.0%
TACTTCGACCTCCACCTGCA+TGG + chr1_2:55433750-55433769 None:intergenic 55.0%
CTCTGCCTGTTCCTTGATGC+AGG - chr1_2:55433989-55434008 Msa0078130:intron 55.0%
GCTTGAACAGTTTGAGCGCC+AGG - chr1_2:55434033-55434052 Msa0078130:intron 55.0%
! AAGCGAGCTGAGAAAGCACG+TGG - chr1_2:55434301-55434320 Msa0078130:intron 55.0%
! AGCGAGCTGAGAAAGCACGT+GGG - chr1_2:55434302-55434321 Msa0078130:intron 55.0%
! AGCTGAGAAAGCACGTGGGT+TGG - chr1_2:55434306-55434325 Msa0078130:intron 55.0%
GCAGGACCTGAAGAAGCTTC+AGG - chr1_2:55435133-55435152 Msa0078130:intron 55.0%
GACCTAGGATGTCAACCGGA+GGG - chr1_2:55435231-55435250 Msa0078130:intron 55.0%
ACCTAGGATGTCAACCGGAG+GGG - chr1_2:55435232-55435251 Msa0078130:intron 55.0%
AGTCGAAGAGTCTCCATGGG+AGG - chr1_2:55435260-55435279 Msa0078130:intron 55.0%
AGTGGCAAGGGGTTGTTTGC+TGG - chr1_2:55435544-55435563 Msa0078130:intron 55.0%
GTGGCAAGGGGTTGTTTGCT+GGG - chr1_2:55435545-55435564 Msa0078130:intron 55.0%
! TGGCAAGGGGTTGTTTGCTG+GGG - chr1_2:55435546-55435565 Msa0078130:intron 55.0%
! AAGGGGTTGTTTGCTGGGGT+GGG - chr1_2:55435550-55435569 Msa0078130:intron 55.0%
! TTGTTTGCTGGGGTGGGGAT+AGG - chr1_2:55435556-55435575 Msa0078130:intron 55.0%
GCCCTTTGTTAGTCCCTGCA+AGG - chr1_2:55436194-55436213 Msa0078130:intron 55.0%
TCCCTGCAAGGCAATGACTG+CGG - chr1_2:55436206-55436225 Msa0078130:intron 55.0%
TGACGACGGAACTGGAGTCA+TGG + chr1_2:55436316-55436335 None:intergenic 55.0%
TGACGACGGAACTGGAGTCA+CGG + chr1_2:55436316-55436335 None:intergenic 55.0%
ACAGTAGCTGACGACGGAAC+TGG + chr1_2:55436363-55436382 None:intergenic 55.0%
GTTCCGTCGTCAGCTACTGT+TGG - chr1_2:55436363-55436382 Msa0078130:intron 55.0%
AGCGAGCCGTCTTTCCTCAA+AGG + chr1_2:55436427-55436446 None:intergenic 55.0%
!! GCTGGAGCTCTGGAACCTGA+TGG - chr1_2:55433532-55433551 Msa0078130:intron 60.0%
AGCAGGAACGTCGTAGGCAG+CGG - chr1_2:55434928-55434947 Msa0078130:CDS 60.0%
!! CTCTGGGGCTTTGATGGGCT+TGG + chr1_2:55435200-55435219 None:intergenic 60.0%
GGACCTAGGATGTCAACCGG+AGG - chr1_2:55435230-55435249 Msa0078130:intron 60.0%
! TCTTCGACTAGCTGCCCCTC+CGG + chr1_2:55435249-55435268 None:intergenic 60.0%
! CAAGGGGTTGTTTGCTGGGG+TGG - chr1_2:55435549-55435568 Msa0078130:intron 60.0%
! AGGGGTTGTTTGCTGGGGTG+GGG - chr1_2:55435551-55435570 Msa0078130:intron 60.0%
GCCGCAGTCATTGCCTTGCA+GGG + chr1_2:55436210-55436229 None:intergenic 60.0%
AGCCGCAGTCATTGCCTTGC+AGG + chr1_2:55436211-55436230 None:intergenic 60.0%
GCAGGAACGTCGTAGGCAGC+GGG - chr1_2:55434929-55434948 Msa0078130:CDS 65.0%
GCCCCTCCGGTTGACATCCT+AGG + chr1_2:55435236-55435255 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 55431185 55436795 55431185 ID=Msa0078130;Name=Msa0078130
chr1_2 mRNA 55431185 55436795 55431185 ID=Msa0078130-mRNA-1;Parent=Msa0078130;Name=Msa0078130-mRNA-1;_AED=0.09;_eAED=0.09;_QI=258|1|1|1|0.91|0.92|13|331|730
chr1_2 exon 55431185 55431997 55431185 ID=Msa0078130-mRNA-1:exon:17267;Parent=Msa0078130-mRNA-1
chr1_2 exon 55432570 55432843 55432570 ID=Msa0078130-mRNA-1:exon:17266;Parent=Msa0078130-mRNA-1
chr1_2 exon 55433030 55433104 55433030 ID=Msa0078130-mRNA-1:exon:17265;Parent=Msa0078130-mRNA-1
chr1_2 exon 55433235 55433308 55433235 ID=Msa0078130-mRNA-1:exon:17264;Parent=Msa0078130-mRNA-1
chr1_2 exon 55433637 55433724 55433637 ID=Msa0078130-mRNA-1:exon:17263;Parent=Msa0078130-mRNA-1
chr1_2 exon 55433818 55433969 55433818 ID=Msa0078130-mRNA-1:exon:17262;Parent=Msa0078130-mRNA-1
chr1_2 exon 55434066 55434225 55434066 ID=Msa0078130-mRNA-1:exon:17261;Parent=Msa0078130-mRNA-1
chr1_2 exon 55434316 55434471 55434316 ID=Msa0078130-mRNA-1:exon:17260;Parent=Msa0078130-mRNA-1
chr1_2 exon 55434568 55434774 55434568 ID=Msa0078130-mRNA-1:exon:17259;Parent=Msa0078130-mRNA-1
chr1_2 exon 55434894 55435139 55434894 ID=Msa0078130-mRNA-1:exon:17258;Parent=Msa0078130-mRNA-1
chr1_2 exon 55435785 55435991 55435785 ID=Msa0078130-mRNA-1:exon:17257;Parent=Msa0078130-mRNA-1
chr1_2 exon 55436097 55436171 55436097 ID=Msa0078130-mRNA-1:exon:17256;Parent=Msa0078130-mRNA-1
chr1_2 exon 55436541 55436795 55436541 ID=Msa0078130-mRNA-1:exon:17255;Parent=Msa0078130-mRNA-1
chr1_2 five_prime_UTR 55436541 55436795 55436541 ID=Msa0078130-mRNA-1:five_prime_utr;Parent=Msa0078130-mRNA-1
chr1_2 five_prime_UTR 55436169 55436171 55436169 ID=Msa0078130-mRNA-1:five_prime_utr;Parent=Msa0078130-mRNA-1
chr1_2 CDS 55436097 55436168 55436097 ID=Msa0078130-mRNA-1:cds;Parent=Msa0078130-mRNA-1
chr1_2 CDS 55435785 55435991 55435785 ID=Msa0078130-mRNA-1:cds;Parent=Msa0078130-mRNA-1
chr1_2 CDS 55434894 55435139 55434894 ID=Msa0078130-mRNA-1:cds;Parent=Msa0078130-mRNA-1
chr1_2 CDS 55434568 55434774 55434568 ID=Msa0078130-mRNA-1:cds;Parent=Msa0078130-mRNA-1
chr1_2 CDS 55434316 55434471 55434316 ID=Msa0078130-mRNA-1:cds;Parent=Msa0078130-mRNA-1
chr1_2 CDS 55434066 55434225 55434066 ID=Msa0078130-mRNA-1:cds;Parent=Msa0078130-mRNA-1
chr1_2 CDS 55433818 55433969 55433818 ID=Msa0078130-mRNA-1:cds;Parent=Msa0078130-mRNA-1
chr1_2 CDS 55433637 55433724 55433637 ID=Msa0078130-mRNA-1:cds;Parent=Msa0078130-mRNA-1
chr1_2 CDS 55433235 55433308 55433235 ID=Msa0078130-mRNA-1:cds;Parent=Msa0078130-mRNA-1
chr1_2 CDS 55433030 55433104 55433030 ID=Msa0078130-mRNA-1:cds;Parent=Msa0078130-mRNA-1
chr1_2 CDS 55432570 55432843 55432570 ID=Msa0078130-mRNA-1:cds;Parent=Msa0078130-mRNA-1
chr1_2 CDS 55431516 55431997 55431516 ID=Msa0078130-mRNA-1:cds;Parent=Msa0078130-mRNA-1
chr1_2 three_prime_UTR 55431185 55431515 55431185 ID=Msa0078130-mRNA-1:three_prime_utr;Parent=Msa0078130-mRNA-1
Gene Sequence

>Msa0078130

ATGTCTAATCCTCAAAACGATCCCCTTTCGCAAGCCGAAACAACTTGTGGATCTCTTCTGTATGAACTTCAGATAATTTGGGACGAAGTTGGCGAGGCTGAGCCTGATAGAGACAGAATGCTGTTTGAGCTTGAACAAGAGTGTCTTGAAGTGTACCGAAGGAAGGTCGATCAGGCGAATAAGTCTAGAGCTCAATTAAGGCAGGCGATTGCTGATTGTGAGGCGGAACTTGCAGCTATCTGTTCTGCAATGGGAGAGCGACCTGTGCACATTAGACAGTCCGATCAAAATGCTGGAAGCCTGAAGGAAGAGTATGCAAGAATTCTTCCACAGCTGGAGGAGATGAAAAAGCATAAGTTGGAGCGGAGAAATCAATTTACAGAAGTTCAAGAGCAGATTCAAAGCCTCTCAATGGAAATTTATGGCCCCAAAGAGTACAGTCCTTCCCTTGTAGATGAAACTGATTTGTCCCTGAGAAAACTTGAAGATTTGCACAGACAGCTAAATGCACTTCAAAATGAAAAGATTGGGCGCCTAAAGACGGTTCAAGAGCACCTGTGTACTTTAAATTCTCTTTGTTTAGTGCTCGGTTTTGACTTTAAGCAGACAGTCCTTGGAATTCATCCCAGTTTAGGAGATGAAGGACCTAAGAGTGTAAGTAATGATACCATCCAGCAACTGGCTGCTGTTATACAACAACTACGGGAAATTAAATTACAGAGAATGCAGAAGCTCCAAGATCTTGCAACAACAATGCTGGAGCTCTGGAACCTGATGGATACACCTATTGAAGAGCAGCAGATGTTTCAGAATGTTACTTGTAATATTGCTGCCTCAGAAGATGAAATAACTGAACCAAACACCTTGTCCGAGGACTTCATCAATTGCGTGGAGGTCGAAGTATCTAGGTTAGAAGAGTTAAAATCCAGCAAAATGAAGGAGCTTGTGCTAAAGAAGAGAACAGAGCTGGAGGAAATTTGTCGAAAGACTCATTTAGTTCCAGAAATAGATGGTGCAGTCGAATATGCCGTTGAAGCTATAGAATCTGGAATTGTGGACCCTGCATGTGTGCTTGAACAGTTTGAGCGCCAGGTTGCCCAAGTTAAAGAGGAAGCTTTGGGTCGAAAAGACATACTTGAAAAGGTTGAGAAATGGTTGGCAGCATGTAATGAAGAGTCTTGGCTTGAGGAATATAACAGGGATGACAATCGATATAATGCTGGAAGAGGTGCTCATCTTACTCTCAAGCGAGCTGAGAAAGCACGTGGGTTGGTTAACAAAATTCCAGGAATGGTAGATGCATTGACTTCAAAAACTATAGCATGGGAAAAGGAAAAAGGTTTCGAATTCACATATGATGGTATTCGTCTACTCTCAATGATTGAAGAGTACAATATATTACGACAAGAGAAAGAGCAGGAACGTCGTAGGCAGCGGGACCTGAAGAAGCTTCAGGGACAAATGATAGCAGAACAGGAGGCACTATATGGATCAAAACCAAGCCCATCAAAGCCCCAGAGTGTAAAGAAGGGACCTAGGATGTCAACCGGAGGGGCAGCTAGTCGAAGAGTCTCCATGGGAGGAGCAATGCTTCAAACTCCAAAACCTGATTCAAAAGCTACTCATTCACGTGCCGTGAGAAAGGTTGACAAAGTGCCTCAGTTTGATCAACTAAGTTACCCGGATGATGGTGTTTCTTGTTTATCATCAGCTCGAAGAGGACTGGATATTGCTGGGATTCCTGCAAAAAAGCACTCACTTGGTGCTGCTAGTGCCTATGAATTAGAATCTCCTCTGACAAGGCAACCTTTTTCTCCCCTCTCATCTAATAATGTATCATCAAAAGCAAATGTAGCGAATGCTGCAAATGAGCATATCATACCGAGTGAAAAGTTGCCGAAAACAATGGCACTTAACAATATGCCCTTTGTTAGTCCCTGCAAGGCAATGACTGCGGCTGATCAAGAGAATAGAACTCCAAAGACAGTGCCTATTCCTATCCCTGCAACACCTTCAACAGCATCAATTCCTATGAATATGGCCATGACTCCAGTTCCGTCGTCAGTTTCTATGAATGTGGCCGTGACTCCAGTTCCGTCGTCAGCTACTGTTGGAGTATGCGACGTGATTCCAGTCCAAGAGATTGAATATTCCTTTGAGGAAAGACGGCTCGCTTATTATATGTTAGCATGA
Protein sequence

>Msa0078130

MSNPQNDPLSQAETTCGSLLYELQIIWDEVGEAEPDRDRMLFELEQECLEVYRRKVDQANKSRAQLRQAIADCEAELAAICSAMGERPVHIRQSDQNAGSLKEEYARILPQLEEMKKHKLERRNQFTEVQEQIQSLSMEIYGPKEYSPSLVDETDLSLRKLEDLHRQLNALQNEKIGRLKTVQEHLCTLNSLCLVLGFDFKQTVLGIHPSLGDEGPKSVSNDTIQQLAAVIQQLREIKLQRMQKLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEDEITEPNTLSEDFINCVEVEVSRLEELKSSKMKELVLKKRTELEEICRKTHLVPEIDGAVEYAVEAIESGIVDPACVLEQFERQVAQVKEEALGRKDILEKVEKWLAACNEESWLEEYNRDDNRYNAGRGAHLTLKRAEKARGLVNKIPGMVDALTSKTIAWEKEKGFEFTYDGIRLLSMIEEYNILRQEKEQERRRQRDLKKLQGQMIAEQEALYGSKPSPSKPQSVKKGPRMSTGGAASRRVSMGGAMLQTPKPDSKATHSRAVRKVDKVPQFDQLSYPDDGVSCLSSARRGLDIAGIPAKKHSLGAASAYELESPLTRQPFSPLSSNNVSSKANVANAANEHIIPSEKLPKTMALNNMPFVSPCKAMTAADQENRTPKTVPIPIPATPSTASIPMNMAMTPVPSSVSMNVAVTPVPSSATVGVCDVIPVQEIEYSFEERRLAYYMLA*