Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389690 | ABY76166.1 | 97.649 | 723 | 9 | 2 | 1 | 723 | 1 | 715 | 0.0 | 1417 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389690 | sp|O04015|P5CS_ACTDE | 78.147 | 723 | 150 | 2 | 1 | 723 | 1 | 715 | 0.0 | 1106 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389690 | B0LSX0 | 97.649 | 723 | 9 | 2 | 1 | 723 | 1 | 715 | 0.0 | 1417 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002420 | Msa0389690 | 0.807559 | 4.765011e-50 | -8.615850e-47 |
| Msa0026940 | Msa0389690 | 0.802763 | 4.808318e-49 | -8.615850e-47 |
| Msa0035730 | Msa0389690 | 0.868496 | 6.252391e-66 | -8.615850e-47 |
| Msa0079280 | Msa0389690 | 0.819439 | 1.160656e-52 | -8.615850e-47 |
| Msa0124910 | Msa0389690 | 0.823773 | 1.156320e-53 | -8.615850e-47 |
| Msa0169410 | Msa0389690 | 0.826096 | 3.271777e-54 | -8.615850e-47 |
| Msa0173250 | Msa0389690 | 0.803506 | 3.374942e-49 | -8.615850e-47 |
| Msa0195230 | Msa0389690 | 0.852998 | 3.194074e-61 | -8.615850e-47 |
| Msa0195260 | Msa0389690 | 0.848745 | 5.039257e-60 | -8.615850e-47 |
| Msa0204950 | Msa0389690 | 0.806924 | 6.494575e-50 | -8.615850e-47 |
| Msa0236940 | Msa0389690 | 0.807282 | 5.455442e-50 | -8.615850e-47 |
| Msa0368640 | Msa0389690 | 0.933668 | 1.320459e-95 | -8.615850e-47 |
| Msa0389540 | Msa0389690 | 0.804385 | 2.215887e-49 | -8.615850e-47 |
| Msa0389690 | Msa0416020 | 0.943137 | 2.068436e-102 | -8.615850e-47 |
| Msa0389690 | Msa0422150 | 0.802008 | 6.876904e-49 | -8.615850e-47 |
| Msa0389690 | Msa0427420 | 0.809194 | 2.134962e-50 | -8.615850e-47 |
| Msa0389690 | Msa0427480 | 0.804381 | 2.219907e-49 | -8.615850e-47 |
| Msa0389690 | Msa0427930 | 0.802896 | 4.512558e-49 | -8.615850e-47 |
| Msa0389690 | Msa0430230 | 0.838485 | 2.796976e-57 | -8.615850e-47 |
| Msa0389690 | Msa0454560 | 0.814069 | 1.858608e-51 | -8.615850e-47 |
| Msa0389690 | Msa0475810 | 0.800756 | 1.241079e-48 | -8.615850e-47 |
| Msa0389690 | Msa0480280 | 0.911373 | 6.542939e-83 | -8.615850e-47 |
| Msa0389690 | Msa0484210 | -0.815394 | 9.456045e-52 | -8.615850e-47 |
| Msa0389690 | Msa0502510 | 0.811008 | 8.680295e-51 | -8.615850e-47 |
| Msa0389690 | Msa0506750 | 0.804748 | 1.861596e-49 | -8.615850e-47 |
| Msa0389690 | Msa0508180 | 0.952132 | 4.675106e-110 | -8.615850e-47 |
| Msa0389690 | Msa0518590 | 0.814652 | 1.381423e-51 | -8.615850e-47 |
| Msa0389690 | Msa0525880 | 0.843283 | 1.540982e-58 | -8.615850e-47 |
| Msa0389690 | Msa0545920 | 0.815354 | 9.653231e-52 | -8.615850e-47 |
| Msa0389690 | Msa0563090 | 0.822301 | 2.549246e-53 | -8.615850e-47 |
| Msa0389690 | Msa0574900 | 0.803881 | 2.820790e-49 | -8.615850e-47 |
| Msa0389690 | Msa0586450 | 0.803663 | 3.130492e-49 | -8.615850e-47 |
| Msa0389690 | Msa0601720 | 0.819485 | 1.133350e-52 | -8.615850e-47 |
| Msa0389690 | Msa0605530 | 0.831864 | 1.310924e-55 | -8.615850e-47 |
| Msa0389690 | Msa0610700 | -0.800937 | 1.140316e-48 | -8.615850e-47 |
| Msa0389690 | Msa0619750 | 0.843956 | 1.018653e-58 | -8.615850e-47 |
| Msa0389690 | Msa0641990 | 0.807077 | 6.026895e-50 | -8.615850e-47 |
| Msa0389690 | Msa0681050 | 0.817998 | 2.464725e-52 | -8.615850e-47 |
| Msa0389690 | Msa0689830 | 0.836504 | 9.000939e-57 | -8.615850e-47 |
| Msa0389690 | Msa0690800 | 0.803763 | 2.985108e-49 | -8.615850e-47 |
| Msa0389690 | Msa0700120 | 0.819720 | 1.001403e-52 | -8.615850e-47 |
| Msa0389690 | Msa0705680 | 0.841678 | 4.106862e-58 | -8.615850e-47 |
| Msa0389690 | Msa0707360 | 0.803851 | 2.861874e-49 | -8.615850e-47 |
| Msa0389690 | Msa0713080 | 0.808590 | 2.873768e-50 | -8.615850e-47 |
| Msa0389690 | Msa0716890 | 0.818197 | 2.222131e-52 | -8.615850e-47 |
| Msa0389690 | Msa0754450 | 0.802297 | 5.998383e-49 | -8.615850e-47 |
| Msa0389690 | Msa0799450 | 0.846155 | 2.594598e-59 | -8.615850e-47 |
| Msa0389690 | Msa0810930 | 0.835079 | 2.067233e-56 | -8.615850e-47 |
| Msa0389690 | Msa0835930 | 0.825779 | 3.891574e-54 | -8.615850e-47 |
| Msa0389690 | Msa0837710 | 0.857430 | 1.640715e-62 | -8.615850e-47 |
| Msa0389690 | Msa0838620 | -0.814245 | 1.699428e-51 | -8.615850e-47 |
| Msa0389690 | Msa0851160 | 0.808084 | 3.684793e-50 | -8.615850e-47 |
| Msa0389690 | Msa0902360 | 0.851851 | 6.777708e-61 | -8.615850e-47 |
| Msa0389690 | Msa0921390 | 0.808178 | 3.518414e-50 | -8.615850e-47 |
| Msa0389690 | Msa0930770 | 0.827271 | 1.715950e-54 | -8.615850e-47 |
| Msa0389690 | Msa0982730 | 0.801249 | 9.843711e-49 | -8.615850e-47 |
| Msa0389690 | Msa1027470 | 0.840033 | 1.109567e-57 | -8.615850e-47 |
| Msa0389690 | Msa1070890 | 0.817197 | 3.735489e-52 | -8.615850e-47 |
| Msa0389690 | Msa1074900 | 0.802542 | 5.340260e-49 | -8.615850e-47 |
| Msa0389690 | Msa1078830 | 0.832987 | 6.906255e-56 | -8.615850e-47 |
| Msa0389690 | Msa1078890 | 0.803764 | 2.983311e-49 | -8.615850e-47 |
| Msa0389690 | Msa1104110 | 0.800206 | 1.606744e-48 | -8.615850e-47 |
| Msa0389690 | Msa1124210 | 0.836431 | 9.396490e-57 | -8.615850e-47 |
| Msa0389690 | Msa1147700 | 0.822932 | 1.818272e-53 | -8.615850e-47 |
| Msa0389690 | Msa1169660 | 0.821778 | 3.369255e-53 | -8.615850e-47 |
| Msa0389690 | Msa1199850 | 0.807210 | 5.649892e-50 | -8.615850e-47 |
| Msa0389690 | Msa1207190 | 0.815405 | 9.401308e-52 | -8.615850e-47 |
| Msa0389690 | Msa1216980 | 0.817787 | 2.751592e-52 | -8.615850e-47 |
| Msa0389690 | Msa1219830 | 0.807711 | 4.422847e-50 | -8.615850e-47 |
| Msa0389690 | Msa1226370 | 0.803962 | 2.713753e-49 | -8.615850e-47 |
| Msa0389690 | Msa1247510 | 0.811355 | 7.298166e-51 | -8.615850e-47 |
| Msa0389690 | Msa1262670 | 0.818213 | 2.204437e-52 | -8.615850e-47 |
| Msa0389690 | Msa1305250 | 0.814554 | 1.452388e-51 | -8.615850e-47 |
| Msa0389690 | Msa1347390 | 0.819880 | 9.207499e-53 | -8.615850e-47 |
| Msa0389690 | Msa1365820 | 0.803801 | 2.931664e-49 | -8.615850e-47 |
| Msa0389690 | Msa1383820 | 0.801559 | 8.505408e-49 | -8.615850e-47 |
| Msa0389690 | Msa1396100 | 0.869591 | 2.761195e-66 | -8.615850e-47 |
| Msa0389690 | Msa1402010 | 0.801576 | 8.434902e-49 | -8.615850e-47 |
| Msa0389690 | Msa1404680 | 0.806515 | 7.925177e-50 | -8.615850e-47 |
| Msa0389690 | Msa1414390 | 0.844940 | 5.535959e-59 | -8.615850e-47 |
| Msa0249850 | Msa0389690 | 0.803992 | 2.675074e-49 | -8.615850e-47 |
| Msa0268110 | Msa0389690 | 0.812066 | 5.110074e-51 | -8.615850e-47 |
| Msa0276860 | Msa0389690 | 0.817519 | 3.162657e-52 | -8.615850e-47 |
| Msa0279000 | Msa0389690 | 0.822405 | 2.410802e-53 | -8.615850e-47 |
| Msa0320600 | Msa0389690 | 0.811181 | 7.960485e-51 | -8.615850e-47 |
| Msa0326710 | Msa0389690 | 0.805950 | 1.042243e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389690 | MtrunA17_Chr3g0112411 | 95.989 | 723 | 21 | 2 | 1 | 723 | 1 | 715 | 0.0 | 1394 |
| Msa0389690 | MtrunA17_Chr4g0008951 | 74.861 | 720 | 172 | 3 | 1 | 720 | 41 | 751 | 0.0 | 1085 |
| Msa0389690 | MtrunA17_Chr7g0239721 | 73.750 | 720 | 178 | 3 | 5 | 721 | 2 | 713 | 0.0 | 1056 |
| Msa0389690 | MtrunA17_Chr4g0053671 | 47.619 | 105 | 52 | 2 | 569 | 672 | 46 | 148 | 4.12e-20 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389690 | AT3G55610.1 | 74.341 | 721 | 177 | 2 | 1 | 721 | 1 | 713 | 0.0 | 1065 |
| Msa0389690 | AT2G39800.1 | 74.064 | 721 | 179 | 2 | 1 | 721 | 1 | 713 | 0.0 | 1053 |
| Msa0389690 | AT2G39800.4 | 74.064 | 721 | 179 | 2 | 1 | 721 | 1 | 713 | 0.0 | 1053 |
| Msa0389690 | AT2G39800.3 | 73.648 | 721 | 179 | 3 | 1 | 721 | 1 | 710 | 0.0 | 1040 |
| Msa0389690 | AT3G55610.2 | 72.814 | 629 | 163 | 2 | 1 | 629 | 1 | 621 | 0.0 | 900 |
| Msa0389690 | AT2G39800.2 | 73.786 | 618 | 154 | 2 | 104 | 721 | 1 | 610 | 0.0 | 894 |
Find 173 sgRNAs with CRISPR-Local
Find 358 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCACTTATGTGCATCTTTA+TGG | 0.086165 | 3_1:-94683195 | None:intergenic |
| TGTTGATAAATCTGCTAATT+TGG | 0.147585 | 3_1:+94685127 | Msa0389690:CDS |
| ATTCATCATATAAATCTTTA+TGG | 0.156682 | 3_1:+94685660 | Msa0389690:CDS |
| AGGATTCTTCTGGCATATTT+TGG | 0.157564 | 3_1:+94682559 | Msa0389690:intron |
| AGATTAGCAGTTGGAAAATT+AGG | 0.160121 | 3_1:+94681380 | Msa0389690:CDS |
| TCTTGGTTATGAAGTTATTT+TGG | 0.185023 | 3_1:+94681529 | Msa0389690:CDS |
| CCTTCCCAACATTAGGAAAT+TGG | 0.215317 | 3_1:+94687112 | Msa0389690:three_prime_UTR |
| CATCAAAATGAAATTACTTT+TGG | 0.217780 | 3_1:+94682723 | Msa0389690:CDS |
| TATGTAGGTGTTACTTTATA+TGG | 0.224316 | 3_1:+94685528 | Msa0389690:intron |
| ACTGTTGGTTCAAAACTTAT+TGG | 0.234157 | 3_1:+94684726 | Msa0389690:CDS |
| AGCTTGCAGAGGGGTTAATT+TGG | 0.252633 | 3_1:+94684097 | Msa0389690:CDS |
| CATAGAAACAAAAGTGAAAT+TGG | 0.260849 | 3_1:+94681056 | None:intergenic |
| TTTCTTCTGTGTTCAGAGTT+AGG | 0.265045 | 3_1:+94686994 | Msa0389690:three_prime_UTR |
| CCTCTGCAAGCTAAATAAAA+AGG | 0.289835 | 3_1:-94684086 | None:intergenic |
| ATTAAGGAGCTAAATATTCT+TGG | 0.303939 | 3_1:+94681512 | Msa0389690:CDS |
| GGAGAAAACGTCATCTCCTT+TGG | 0.317664 | 3_1:+94684118 | Msa0389690:CDS |
| CATGTTTCCTTCCCAACATT+AGG | 0.319769 | 3_1:+94687105 | Msa0389690:three_prime_UTR |
| GATTAGCAGTTGGAAAATTA+GGG | 0.321381 | 3_1:+94681381 | Msa0389690:CDS |
| AAACTGAACTTTGTGCAAAA+TGG | 0.325995 | 3_1:-94684589 | None:intergenic |
| GGACTGTTCCAGACGGCTTC+AGG | 0.330973 | 3_1:+94683264 | Msa0389690:CDS |
| GCGTCGTTCTCATTGAATAT+TGG | 0.334868 | 3_1:-94682207 | None:intergenic |
| AAAGTTGCTTTCTAAAATCT+TGG | 0.335431 | 3_1:-94682146 | None:intergenic |
| TCGGTTTGGTGGAGAGAAAC+AGG | 0.341522 | 3_1:-94681130 | None:intergenic |
| TTTATCAGCTTTGTTGGCCT+TGG | 0.347250 | 3_1:+94682593 | Msa0389690:CDS |
| TGACAGTTTATCAGCTTTGT+TGG | 0.347433 | 3_1:+94682587 | Msa0389690:CDS |
| TTCAGCGATGGAGCACGATT+TGG | 0.347554 | 3_1:+94686113 | Msa0389690:CDS |
| TACGTTACAGGCCGTGTCTT+CGG | 0.359125 | 3_1:+94683387 | Msa0389690:intron |
| TCGACGAAAATCCCTGTTCT+AGG | 0.362437 | 3_1:+94684961 | Msa0389690:CDS |
| GGAAACACTTCTTGTTCATA+AGG | 0.364819 | 3_1:+94685298 | Msa0389690:intron |
| ACTTCTTGTTCATAAGGATT+TGG | 0.368512 | 3_1:+94685304 | Msa0389690:CDS |
| GGGTCGGCGTTCGCCATCTT+CGG | 0.394626 | 3_1:-94681149 | None:intergenic |
| AAAATCCTTGGTTGCTAGGC+TGG | 0.395053 | 3_1:+94683522 | Msa0389690:CDS |
| TCATCAGGTGCTGTCGGCCT+CGG | 0.398416 | 3_1:+94681554 | Msa0389690:CDS |
| TTATGATGATTTGTTTAGTC+AGG | 0.400090 | 3_1:+94681921 | Msa0389690:CDS |
| ATCACCAATTTCCTAATGTT+GGG | 0.401712 | 3_1:-94687116 | None:intergenic |
| CACAAGCAGGATTCATGCTC+GGG | 0.402561 | 3_1:+94686252 | Msa0389690:CDS |
| GGTAATGATAACAGGAATTC+CGG | 0.408004 | 3_1:-94682814 | None:intergenic |
| GAGAAAACGTCATCTCCTTT+GGG | 0.408409 | 3_1:+94684119 | Msa0389690:CDS |
| TTCAACAGAGAACTTGCTTT+CGG | 0.414727 | 3_1:-94685555 | None:intergenic |
| ATCAAGTAGTTAGGTCTTTG+TGG | 0.417195 | 3_1:-94686896 | None:intergenic |
| AAGCCACAAGTTGAACTTGA+TGG | 0.417920 | 3_1:+94681856 | Msa0389690:CDS |
| GGCGTTCGCCATCTTCGGTT+TGG | 0.419800 | 3_1:-94681144 | None:intergenic |
| TTTACCTGTACCAATGCATC+AGG | 0.419919 | 3_1:-94684170 | None:intergenic |
| ACAAGTTTATTGCTGCCTCT+TGG | 0.421855 | 3_1:-94684922 | None:intergenic |
| GTGCACCTGGTAATGATAAC+AGG | 0.425783 | 3_1:-94682822 | None:intergenic |
| GATCACCAATTTCCTAATGT+TGG | 0.427212 | 3_1:-94687117 | None:intergenic |
| ATTTGAACAGATAGCTTCCT+TGG | 0.437264 | 3_1:+94684506 | Msa0389690:intron |
| CATAAGGATTTGGTAGAGAA+AGG | 0.437766 | 3_1:+94685314 | Msa0389690:CDS |
| AACAATCCATCAACTCCTAC+TGG | 0.437800 | 3_1:-94686277 | None:intergenic |
| CGGGGTCCAGTAGGAGTTGA+TGG | 0.437815 | 3_1:+94686271 | Msa0389690:CDS |
| TAAAGAGACCTGAAGCCGTC+TGG | 0.452613 | 3_1:-94683272 | None:intergenic |
| TGCAATAATTCGTATGTTGT+TGG | 0.453587 | 3_1:-94683688 | None:intergenic |
| TTACCAGCATGACCTAGAAC+AGG | 0.453722 | 3_1:-94684973 | None:intergenic |
| CGAGTCTCGCCCTGATGCAT+TGG | 0.455731 | 3_1:+94684160 | Msa0389690:CDS |
| GATGTAGATGGTCTTTATAA+TGG | 0.457455 | 3_1:+94682648 | Msa0389690:CDS |
| GGCAAGGCTTGTGCTGCTGT+TGG | 0.460166 | 3_1:+94681877 | Msa0389690:CDS |
| GACAAGTCTAGGGTTGGAAG+AGG | 0.461864 | 3_1:+94682747 | Msa0389690:CDS |
| GGAAGTGGACAAGTAGTAGA+TGG | 0.465008 | 3_1:+94686852 | Msa0389690:CDS |
| ATAAATAGCTCCAAATAGAA+AGG | 0.465415 | 3_1:+94687189 | Msa0389690:three_prime_UTR |
| GTGGAGAGAAACAGGGATGA+AGG | 0.465559 | 3_1:-94681122 | None:intergenic |
| CTGTTCGTTGGCTTGCACCT+TGG | 0.468448 | 3_1:+94685611 | Msa0389690:CDS |
| GATGGAGCACGATTTGGATT+AGG | 0.469235 | 3_1:+94686119 | Msa0389690:CDS |
| TTGGCAATACGAAGTGGGAA+TGG | 0.470100 | 3_1:+94684525 | Msa0389690:CDS |
| TCAAGTAGTTAGGTCTTTGT+GGG | 0.471554 | 3_1:-94686895 | None:intergenic |
| CGAGATGGCTGTTGCCGCTA+GGG | 0.472977 | 3_1:+94683243 | Msa0389690:CDS |
| TCTGTTCATGCTGCTGATGC+CGG | 0.473603 | 3_1:+94682795 | Msa0389690:CDS |
| TGAAATACCTGAGCTACTTA+AGG | 0.475896 | 3_1:+94684767 | Msa0389690:CDS |
| CAACTGCTAATCTTCCATCT+TGG | 0.478451 | 3_1:-94681370 | None:intergenic |
| GTATTCACCTTAAGTAGCTC+AGG | 0.479835 | 3_1:-94684774 | None:intergenic |
| ATCTTCTGTGACAATGGAAT+CGG | 0.485571 | 3_1:-94685787 | None:intergenic |
| GTCGACAAAGGCTTAGATAC+AGG | 0.487555 | 3_1:+94681576 | Msa0389690:CDS |
| TATTTCTTCGTCAAGTCGAC+AGG | 0.492040 | 3_1:+94685826 | Msa0389690:CDS |
| AATCATCATAAGTAGCCATA+AGG | 0.493336 | 3_1:-94681909 | None:intergenic |
| TGTTGGACAAAGCAGCCTTA+TGG | 0.495426 | 3_1:+94681894 | Msa0389690:CDS |
| TACAATATTCAATTGAGAGA+AGG | 0.495583 | 3_1:+94687026 | Msa0389690:three_prime_UTR |
| ATAGTATTAGTGACGATTTG+CGG | 0.497386 | 3_1:+94685345 | Msa0389690:CDS |
| ATCCCTGTTCTAGGTCATGC+TGG | 0.499422 | 3_1:+94684970 | Msa0389690:CDS |
| TTCATGATCTTCTGTGACAA+TGG | 0.502299 | 3_1:-94685793 | None:intergenic |
| GCGAGATGGCTGTTGCCGCT+AGG | 0.503311 | 3_1:+94683242 | Msa0389690:CDS |
| GTTCGCCATCTTCGGTTTGG+TGG | 0.504248 | 3_1:-94681141 | None:intergenic |
| AATCAGAAACAAACCTCGTA+TGG | 0.504586 | 3_1:-94682249 | None:intergenic |
| TTGGTTTCATCAGGTGCTGT+CGG | 0.505796 | 3_1:+94681548 | Msa0389690:CDS |
| GGGTACCAATACGCTGTCCT+TGG | 0.507124 | 3_1:-94683168 | None:intergenic |
| TGGCAATACGAAGTGGGAAT+GGG | 0.507240 | 3_1:+94684526 | Msa0389690:CDS |
| AGGCCGTGTCTTCGGAAGAA+AGG | 0.510241 | 3_1:+94683395 | Msa0389690:intron |
| AGAACGACGCAGTCAGTACT+AGG | 0.510541 | 3_1:+94682220 | Msa0389690:CDS |
| ATTCTCCAAGGACAGCGTAT+TGG | 0.512269 | 3_1:+94683163 | Msa0389690:CDS |
| TGCAGGCTTCTCAAAGGAAG+TGG | 0.512350 | 3_1:+94686837 | Msa0389690:intron |
| CTGTCGGCCTCGGTCGACAA+AGG | 0.513517 | 3_1:+94681564 | Msa0389690:CDS |
| TCTCTCCACCAAACCGAAGA+TGG | 0.513853 | 3_1:+94681136 | Msa0389690:exon |
| TTTGGAGACAAGTCTAGGGT+TGG | 0.514543 | 3_1:+94682741 | Msa0389690:CDS |
| TTTGATAGTGGATCACTTGG+AGG | 0.515358 | 3_1:-94682672 | None:intergenic |
| TCCATAAAGATGCACATAAG+TGG | 0.515951 | 3_1:+94683194 | Msa0389690:CDS |
| CATACGAATTATTGCAAACA+TGG | 0.516132 | 3_1:+94683695 | Msa0389690:CDS |
| TATGTGCATCTTTATGGAAG+AGG | 0.518848 | 3_1:-94683189 | None:intergenic |
| AGGATTTGGTAGAGAAAGGC+TGG | 0.520318 | 3_1:+94685318 | Msa0389690:CDS |
| TAAATAGCTCCAAATAGAAA+GGG | 0.522122 | 3_1:+94687190 | Msa0389690:three_prime_UTR |
| ACAATATTCAATTGAGAGAA+GGG | 0.523371 | 3_1:+94687027 | Msa0389690:three_prime_UTR |
| TGAACCAACAGTATCAGGTA+TGG | 0.525984 | 3_1:-94684715 | None:intergenic |
| ACAGGAAATTGATTCAAAGT+AGG | 0.529036 | 3_1:+94681594 | Msa0389690:CDS |
| GACAAAATCTCTACAAGGGT+CGG | 0.530217 | 3_1:-94681165 | None:intergenic |
| CCAATTTCCTAATGTTGGGA+AGG | 0.531730 | 3_1:-94687112 | None:intergenic |
| TCGCCCTGATGCATTGGTAC+AGG | 0.531885 | 3_1:+94684166 | Msa0389690:CDS |
| GTTCAACTTGTGGCTTCTGA+AGG | 0.535455 | 3_1:-94681849 | None:intergenic |
| ACAAGTCTAGGGTTGGAAGA+GGG | 0.535997 | 3_1:+94682748 | Msa0389690:CDS |
| TTTCCTTTCTTCCGAAGACA+CGG | 0.536247 | 3_1:-94683398 | None:intergenic |
| GCTGGATGATGTAATTGATC+TGG | 0.537357 | 3_1:+94684894 | Msa0389690:intron |
| GAATTCCTGTTATCATTACC+AGG | 0.538039 | 3_1:+94682817 | Msa0389690:CDS |
| TAAATCTGCTAATTTGGAGA+TGG | 0.538816 | 3_1:+94685133 | Msa0389690:CDS |
| AAGTCTAGGGTTGGAAGAGG+GGG | 0.539406 | 3_1:+94682750 | Msa0389690:CDS |
| GCATGAAGCGACGGCAGGCA+AGG | 0.541955 | 3_1:+94686937 | Msa0389690:three_prime_UTR |
| GGGAATGGGCTTCTCTTGAA+AGG | 0.542564 | 3_1:+94684540 | Msa0389690:CDS |
| TTGCCTGCCGTCGCTTCATG+CGG | 0.545263 | 3_1:-94686935 | None:intergenic |
| GCTGTTGTTACTCGCCAAGA+TGG | 0.546330 | 3_1:+94681356 | Msa0389690:CDS |
| ATCATATAAATCTTTATGGA+AGG | 0.547903 | 3_1:+94685664 | Msa0389690:CDS |
| GCACAAGCAGGATTCATGCT+CGG | 0.548409 | 3_1:+94686251 | Msa0389690:CDS |
| ACATCATGAGTACTGTTCGT+TGG | 0.551298 | 3_1:+94685599 | Msa0389690:CDS |
| GTTGTTGCTGCACAAGAAGC+AGG | 0.557805 | 3_1:+94683493 | Msa0389690:CDS |
| ATTAGGGGCACTATGTGAGC+AGG | 0.558845 | 3_1:+94681397 | Msa0389690:CDS |
| ATGTGCATCTTTATGGAAGA+GGG | 0.558884 | 3_1:-94683188 | None:intergenic |
| CAAGTCTAGGGTTGGAAGAG+GGG | 0.559526 | 3_1:+94682749 | Msa0389690:CDS |
| AGTTAGGTCTTTGTGGGTGT+AGG | 0.560284 | 3_1:-94686889 | None:intergenic |
| ACAAGTTGAACTTGATGGCA+AGG | 0.561360 | 3_1:+94681861 | Msa0389690:CDS |
| TGAAAATCCGCATGAAGCGA+CGG | 0.563909 | 3_1:+94686928 | Msa0389690:three_prime_UTR |
| TGTTAAGCGCATAATCATCA+AGG | 0.564458 | 3_1:+94681193 | Msa0389690:CDS |
| AGTGACGATTTGCGGTCGGA+AGG | 0.565083 | 3_1:+94685353 | Msa0389690:CDS |
| TCTTTGACAAAATCTCTACA+AGG | 0.569118 | 3_1:-94681170 | None:intergenic |
| AATCCGCATGAAGCGACGGC+AGG | 0.569163 | 3_1:+94686932 | Msa0389690:three_prime_UTR |
| AGAGGTTGATGTACGCGAGA+TGG | 0.572314 | 3_1:+94683228 | Msa0389690:CDS |
| TGCCAATGCAGGCTTCTCAA+AGG | 0.574998 | 3_1:+94686831 | Msa0389690:intron |
| TAAAACCAGCCTAGCAACCA+AGG | 0.575939 | 3_1:-94683527 | None:intergenic |
| TTGATAGTGGATCACTTGGA+GGG | 0.578228 | 3_1:-94682671 | None:intergenic |
| ACCATGGCATTGCATCCTGA+TGG | 0.580281 | 3_1:-94685191 | None:intergenic |
| GGCTTGCACCTTGGAAATCG+TGG | 0.584787 | 3_1:+94685620 | Msa0389690:CDS |
| GCTATTTATTTGAACAACTG+TGG | 0.587498 | 3_1:-94687175 | None:intergenic |
| GTAGGTGTTACTTTATATGG+AGG | 0.588299 | 3_1:+94685531 | Msa0389690:intron |
| CCATAAAGATGCACATAAGT+GGG | 0.592742 | 3_1:+94683195 | Msa0389690:CDS |
| TGATGTAATGAACGAGCAAG+TGG | 0.593696 | 3_1:-94685582 | None:intergenic |
| TAATTCGTATGTTGTTGGCA+AGG | 0.595682 | 3_1:-94683683 | None:intergenic |
| AATCACGTGAGAAAGAGATC+AGG | 0.595752 | 3_1:+94683452 | Msa0389690:CDS |
| TTGCCATCAAGTTCAACTTG+TGG | 0.596653 | 3_1:-94681859 | None:intergenic |
| ACTTATTCACACATACATCA+AGG | 0.602298 | 3_1:+94682695 | Msa0389690:CDS |
| ATCTAAGCCTTTGTCGACCG+AGG | 0.602507 | 3_1:-94681571 | None:intergenic |
| ATTCATGCTCGGGGTCCAGT+AGG | 0.607413 | 3_1:+94686262 | Msa0389690:CDS |
| ATTCCCACTTCGTATTGCCA+AGG | 0.607702 | 3_1:-94684523 | None:intergenic |
| GCTTCTCTTGAAAGGAGGCA+AGG | 0.610911 | 3_1:+94684548 | Msa0389690:CDS |
| TAAGTGGGTCCCTTCAAAAG+AGG | 0.611546 | 3_1:+94683210 | Msa0389690:CDS |
| ATTAGCAGTTGGAAAATTAG+GGG | 0.611624 | 3_1:+94681382 | Msa0389690:CDS |
| AACATCATCCACGATTTCCA+AGG | 0.613354 | 3_1:-94685628 | None:intergenic |
| AATCTCACTAAAATTCTCCA+AGG | 0.618787 | 3_1:+94683151 | Msa0389690:CDS |
| AGGTTGGAATAAGCACAAGC+AGG | 0.619676 | 3_1:+94686239 | Msa0389690:intron |
| CGGTTTGGTGGAGAGAAACA+GGG | 0.620598 | 3_1:-94681129 | None:intergenic |
| ATGGATTGTTAACAACCAGA+TGG | 0.621962 | 3_1:+94686290 | Msa0389690:CDS |
| CTTCCTTGGCAATACGAAGT+GGG | 0.627539 | 3_1:+94684520 | Msa0389690:CDS |
| GCTTCCTTGGCAATACGAAG+TGG | 0.630392 | 3_1:+94684519 | Msa0389690:CDS |
| TCCATCAGGATGCAATGCCA+TGG | 0.631095 | 3_1:+94685190 | Msa0389690:CDS |
| TATTAGTGACGATTTGCGGT+CGG | 0.633470 | 3_1:+94685349 | Msa0389690:CDS |
| GAAGCCATACCTGATACTGT+TGG | 0.635151 | 3_1:+94684711 | Msa0389690:CDS |
| ATAATTAAAAGAACTCCCAA+AGG | 0.641890 | 3_1:-94684134 | None:intergenic |
| GCAAACATGGAAGATCCGAT+TGG | 0.643252 | 3_1:+94683708 | Msa0389690:CDS |
| AATGGGCTTCTCTTGAAAGG+AGG | 0.649708 | 3_1:+94684543 | Msa0389690:CDS |
| CAAGATGGAAGATTAGCAGT+TGG | 0.654529 | 3_1:+94681371 | Msa0389690:CDS |
| GCTAGTACAAGATTCAGCGA+TGG | 0.668586 | 3_1:+94686101 | Msa0389690:CDS |
| CCGCTAGGGACTGTTCCAGA+CGG | 0.668873 | 3_1:+94683257 | Msa0389690:CDS |
| CTTTGACAAAATCTCTACAA+GGG | 0.672180 | 3_1:-94681169 | None:intergenic |
| TACTAGGAAAGCTCCATACG+AGG | 0.688400 | 3_1:+94682236 | Msa0389690:CDS |
| TTACCTGTACCAATGCATCA+GGG | 0.694781 | 3_1:-94684169 | None:intergenic |
| ACAAGCAGGATTCATGCTCG+GGG | 0.697980 | 3_1:+94686253 | Msa0389690:CDS |
| ATTGATCTGGTGATTCCAAG+AGG | 0.700847 | 3_1:+94684907 | Msa0389690:CDS |
| TCTCTTGAAAGGAGGCAAGG+AGG | 0.705490 | 3_1:+94684551 | Msa0389690:CDS |
| TACCAGCATGACCTAGAACA+GGG | 0.710800 | 3_1:-94684972 | None:intergenic |
| ACGATTTGGATTAGGCGCAG+AGG | 0.714176 | 3_1:+94686127 | Msa0389690:CDS |
| CCGTCTGGAACAGTCCCTAG+CGG | 0.716534 | 3_1:-94683257 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATAATAGAAGAAAAAT+TGG | + | chr3_1:94681445-94681464 | Msa0389690:intron | 10.0% |
| !! | AAAAGAGAAAAATATAATTT+GGG | - | chr3_1:94682425-94682444 | None:intergenic | 10.0% |
| !! | TGTGTTAAAATAAAATAAAA+CGG | - | chr3_1:94682879-94682898 | None:intergenic | 10.0% |
| !!! | AATATATTTCTAATTGAAAA+TGG | - | chr3_1:94682914-94682933 | None:intergenic | 10.0% |
| !! | AATTAGAAATATATTAGTTA+GGG | + | chr3_1:94682919-94682938 | Msa0389690:intron | 10.0% |
| !!! | AATTCATTTTATCTAAAATA+AGG | - | chr3_1:94684343-94684362 | None:intergenic | 10.0% |
| !!! | ATTTATGCATTTTTTTTTTT+TGG | + | chr3_1:94684653-94684672 | Msa0389690:intron | 10.0% |
| !!! | TTTATGCATTTTTTTTTTTT+GGG | + | chr3_1:94684654-94684673 | Msa0389690:intron | 10.0% |
| !! | ATTATAAAGTTTATATTGTA+AGG | + | chr3_1:94685476-94685495 | Msa0389690:intron | 10.0% |
| !!! | TTTTACAATGTTATTTATTT+AGG | + | chr3_1:94685941-94685960 | Msa0389690:intron | 10.0% |
| !! | ATTTATATATGAATAATGTT+TGG | + | chr3_1:94686048-94686067 | Msa0389690:intron | 10.0% |
| !!! | GTTAATTTATCATTATATTT+TGG | + | chr3_1:94686208-94686227 | Msa0389690:intron | 10.0% |
| !!! | TTTATTTTGATTCATTTTCA+AGG | + | chr3_1:94681325-94681344 | Msa0389690:intron | 15.0% |
| !!! | AAACACTTTGTTATAAATAT+GGG | + | chr3_1:94681640-94681659 | Msa0389690:intron | 15.0% |
| !! | CAAAAGAGAAAAATATAATT+TGG | - | chr3_1:94682426-94682445 | None:intergenic | 15.0% |
| !!! | AACACTTTTAAGTATTTTTT+AGG | - | chr3_1:94682522-94682541 | None:intergenic | 15.0% |
| !!! | TTATTTTAACACATTTTTTG+TGG | + | chr3_1:94682886-94682905 | Msa0389690:intron | 15.0% |
| !! | CAATTAGAAATATATTAGTT+AGG | + | chr3_1:94682918-94682937 | Msa0389690:intron | 15.0% |
| !!! | AATTTTCAAAAAATGAGAAT+CGG | - | chr3_1:94683083-94683102 | None:intergenic | 15.0% |
| !! | TTGTCAAATTATCATTTAAT+TGG | - | chr3_1:94684615-94684634 | None:intergenic | 15.0% |
| !! | ATTCATCATATAAATCTTTA+TGG | + | chr3_1:94685660-94685679 | Msa0389690:CDS | 15.0% |
| !! | TAAAAAGAAAAATGTTTGTT+GGG | - | chr3_1:94685984-94686003 | None:intergenic | 15.0% |
| !! | TTAAAAAGAAAAATGTTTGT+TGG | - | chr3_1:94685985-94686004 | None:intergenic | 15.0% |
| !! | ATGCTATAATTACTTAATTA+TGG | - | chr3_1:94686525-94686544 | None:intergenic | 15.0% |
| !! | TAATTAAGTAATTATAGCAT+TGG | + | chr3_1:94686525-94686544 | Msa0389690:intron | 15.0% |
| !!! | TTGATTGTAATTTATTTTCT+TGG | + | chr3_1:94686968-94686987 | Msa0389690:three_prime_UTR | 15.0% |
| !!! | TGATTGTAATTTATTTTCTT+GGG | + | chr3_1:94686969-94686988 | Msa0389690:three_prime_UTR | 15.0% |
| !!! | TCTGTCATTTATTTTCAAAA+GGG | - | chr3_1:94681493-94681512 | None:intergenic | 20.0% |
| !!! | ATCTGTCATTTATTTTCAAA+AGG | - | chr3_1:94681494-94681513 | None:intergenic | 20.0% |
| !! | TGAAAATAAATGACAGATTA+AGG | + | chr3_1:94681496-94681515 | Msa0389690:intron | 20.0% |
| !!! | CAAACACTTTGTTATAAATA+TGG | + | chr3_1:94681639-94681658 | Msa0389690:intron | 20.0% |
| !!! | AACACTTTGTTATAAATATG+GGG | + | chr3_1:94681641-94681660 | Msa0389690:intron | 20.0% |
| !!! | TTAATTGATTTAGCATCTTA+TGG | + | chr3_1:94681962-94681981 | Msa0389690:intron | 20.0% |
| !! | TTACATCAACTTATAAACAA+TGG | - | chr3_1:94681992-94682011 | None:intergenic | 20.0% |
| !!! | TTCTTGTCAATTTCATTTTT+AGG | + | chr3_1:94682014-94682033 | Msa0389690:intron | 20.0% |
| !! | AACAAAGCATAATTTAAACT+TGG | + | chr3_1:94682276-94682295 | Msa0389690:intron | 20.0% |
| !! | TTGTGAAGAAAAAAAATTAG+TGG | + | chr3_1:94682325-94682344 | Msa0389690:intron | 20.0% |
| !!! | TTTTTTTGCTGTTATGATAT+AGG | + | chr3_1:94682376-94682395 | Msa0389690:intron | 20.0% |
| !! | TCTTTATACTGATCATTATA+TGG | + | chr3_1:94682465-94682484 | Msa0389690:intron | 20.0% |
| !!! | CATCAAAATGAAATTACTTT+TGG | + | chr3_1:94682723-94682742 | Msa0389690:CDS | 20.0% |
| !!! | GATTCTCATTTTTTGAAAAT+TGG | + | chr3_1:94683082-94683101 | Msa0389690:intron | 20.0% |
| !!! | TTTTATTTTTCTTCTTTCAG+TGG | + | chr3_1:94683115-94683134 | Msa0389690:intron | 20.0% |
| !! | GAAGAACAAAAAATATGAAA+AGG | - | chr3_1:94684201-94684220 | None:intergenic | 20.0% |
| !! | ATGATCAATCAATCTAAAAA+TGG | - | chr3_1:94684428-94684447 | None:intergenic | 20.0% |
| !!! | ATTTTATTGTCAAAATCAGA+TGG | + | chr3_1:94685089-94685108 | Msa0389690:intron | 20.0% |
| !!! | TTTTATTGTCAAAATCAGAT+GGG | + | chr3_1:94685090-94685109 | Msa0389690:intron | 20.0% |
| !! | AAATAACATATATTAAGGCA+TGG | - | chr3_1:94685263-94685282 | None:intergenic | 20.0% |
| !! | TTATTTAAATTTGAACTCCT+AGG | + | chr3_1:94685277-94685296 | Msa0389690:intron | 20.0% |
| !!! | AGATGATTTAAAACTTATGT+AGG | + | chr3_1:94685513-94685532 | Msa0389690:intron | 20.0% |
| !! | ATCATATAAATCTTTATGGA+AGG | + | chr3_1:94685664-94685683 | Msa0389690:CDS | 20.0% |
| !!! | ATTATATTTTGGGCTTTAAT+AGG | + | chr3_1:94686219-94686238 | Msa0389690:intron | 20.0% |
| !!! | AATGTTTCTAAAGTATTAGA+AGG | - | chr3_1:94686330-94686349 | None:intergenic | 20.0% |
| !! | TCAATAAATAAGCTCAAATA+AGG | + | chr3_1:94686743-94686762 | Msa0389690:intron | 20.0% |
| !!! | AATTTTTTTCCCTTTCTATT+TGG | - | chr3_1:94687202-94687221 | None:intergenic | 20.0% |
| !!! | TTTTGATTCATTTTCAAGGT+TGG | + | chr3_1:94681329-94681348 | Msa0389690:intron | 25.0% |
| ! | ATTAAGGAGCTAAATATTCT+TGG | + | chr3_1:94681512-94681531 | Msa0389690:CDS | 25.0% |
| !! | TCTTGGTTATGAAGTTATTT+TGG | + | chr3_1:94681529-94681548 | Msa0389690:CDS | 25.0% |
| !! | ACACTTTGTTATAAATATGG+GGG | + | chr3_1:94681642-94681661 | Msa0389690:intron | 25.0% |
| !!! | TTATGATGATTTGTTTAGTC+AGG | + | chr3_1:94681921-94681940 | Msa0389690:CDS | 25.0% |
| !!! | AAAGTTGCTTTCTAAAATCT+TGG | - | chr3_1:94682149-94682168 | None:intergenic | 25.0% |
| ! | AAAGCATAATTTAAACTTGG+AGG | + | chr3_1:94682279-94682298 | Msa0389690:intron | 25.0% |
| !!! | TTTTTTCTGTCAAACAACTA+AGG | + | chr3_1:94683836-94683855 | Msa0389690:intron | 25.0% |
| !! | GATTGATTCAGTTTAAAAAG+CGG | - | chr3_1:94683862-94683881 | None:intergenic | 25.0% |
| ! | ATAATTAAAAGAACTCCCAA+AGG | - | chr3_1:94684137-94684156 | None:intergenic | 25.0% |
| ! | TCATTTATAAATCAATCGAG+AGG | - | chr3_1:94684223-94684242 | None:intergenic | 25.0% |
| !!! | TAAATGATTCTTTTTCAGCT+CGG | + | chr3_1:94684236-94684255 | Msa0389690:intron | 25.0% |
| ! | ATTACCTGAACATTTAGATA+GGG | - | chr3_1:94684687-94684706 | None:intergenic | 25.0% |
| ! | AATTACCTGAACATTTAGAT+AGG | - | chr3_1:94684688-94684707 | None:intergenic | 25.0% |
| ! | TGCAAGTATATTAAGCTTAA+AGG | - | chr3_1:94685001-94685020 | None:intergenic | 25.0% |
| !! | TGTTGATAAATCTGCTAATT+TGG | + | chr3_1:94685127-94685146 | Msa0389690:CDS | 25.0% |
| !! | ATATTGTAAGGTTTCTGAAA+TGG | + | chr3_1:94685488-94685507 | Msa0389690:intron | 25.0% |
| !!! | TATGTAGGTGTTACTTTATA+TGG | + | chr3_1:94685528-94685547 | Msa0389690:intron | 25.0% |
| ! | CGATGTAATATTTGATTAGA+GGG | - | chr3_1:94685886-94685905 | None:intergenic | 25.0% |
| ! | TCGATGTAATATTTGATTAG+AGG | - | chr3_1:94685887-94685906 | None:intergenic | 25.0% |
| ! | TCTAATCAAATATTACATCG+AGG | + | chr3_1:94685886-94685905 | Msa0389690:intron | 25.0% |
| ! | AAAAGCTACTGATGATAAAA+AGG | - | chr3_1:94686174-94686193 | None:intergenic | 25.0% |
| ! | TCAATAAGAAAGAAACAGAA+AGG | - | chr3_1:94686362-94686381 | None:intergenic | 25.0% |
| ! | TGTTTCTTTCTTATTGAACT+AGG | + | chr3_1:94686365-94686384 | Msa0389690:intron | 25.0% |
| ! | AATTATGGTTTATCCAAACA+AGG | - | chr3_1:94686510-94686529 | None:intergenic | 25.0% |
| ! | CAGTTTATATACCAAATAGT+TGG | - | chr3_1:94686793-94686812 | None:intergenic | 25.0% |
| ! | TACAATATTCAATTGAGAGA+AGG | + | chr3_1:94687026-94687045 | Msa0389690:three_prime_UTR | 25.0% |
| ! | ACAATATTCAATTGAGAGAA+GGG | + | chr3_1:94687027-94687046 | Msa0389690:three_prime_UTR | 25.0% |
| ! | ATAAATAGCTCCAAATAGAA+AGG | + | chr3_1:94687189-94687208 | Msa0389690:three_prime_UTR | 25.0% |
| ! | TAAATAGCTCCAAATAGAAA+GGG | + | chr3_1:94687190-94687209 | Msa0389690:three_prime_UTR | 25.0% |
| CTTTGACAAAATCTCTACAA+GGG | - | chr3_1:94681172-94681191 | None:intergenic | 30.0% | |
| TCTTTGACAAAATCTCTACA+AGG | - | chr3_1:94681173-94681192 | None:intergenic | 30.0% | |
| TCACAAAACTTCAATACCAA+TGG | + | chr3_1:94681278-94681297 | Msa0389690:intron | 30.0% | |
| ATACCAATGGATAATGCAAA+TGG | + | chr3_1:94681291-94681310 | Msa0389690:intron | 30.0% | |
| AGATTAGCAGTTGGAAAATT+AGG | + | chr3_1:94681380-94681399 | Msa0389690:CDS | 30.0% | |
| GATTAGCAGTTGGAAAATTA+GGG | + | chr3_1:94681381-94681400 | Msa0389690:CDS | 30.0% | |
| ATTAGCAGTTGGAAAATTAG+GGG | + | chr3_1:94681382-94681401 | Msa0389690:CDS | 30.0% | |
| !!! | GAAGTTATTTTGGTTTCATC+AGG | + | chr3_1:94681539-94681558 | Msa0389690:CDS | 30.0% |
| ! | ACAGGAAATTGATTCAAAGT+AGG | + | chr3_1:94681594-94681613 | Msa0389690:CDS | 30.0% |
| !! | AACAACGATGATTGCTATTT+AGG | - | chr3_1:94681688-94681707 | None:intergenic | 30.0% |
| AATCATCATAAGTAGCCATA+AGG | - | chr3_1:94681912-94681931 | None:intergenic | 30.0% | |
| ! | TCTTTTGATAAATGTGTCCA+AGG | + | chr3_1:94682439-94682458 | Msa0389690:intron | 30.0% |
| ! | CTTTTGATAAATGTGTCCAA+GGG | + | chr3_1:94682440-94682459 | Msa0389690:intron | 30.0% |
| !! | AAGATCTGCTTTTAATTCCA+AGG | - | chr3_1:94682613-94682632 | None:intergenic | 30.0% |
| ! | ATTTTGTTGAGTGATGTAGA+TGG | + | chr3_1:94682636-94682655 | Msa0389690:CDS | 30.0% |
| GATGTAGATGGTCTTTATAA+TGG | + | chr3_1:94682648-94682667 | Msa0389690:CDS | 30.0% | |
| !! | GTGTGAATAAGTTTTGATAG+TGG | - | chr3_1:94682687-94682706 | None:intergenic | 30.0% |
| ACTTATTCACACATACATCA+AGG | + | chr3_1:94682695-94682714 | Msa0389690:CDS | 30.0% | |
| ! | ATGAACAGAAGCTTTTACTT+TGG | - | chr3_1:94682784-94682803 | None:intergenic | 30.0% |
| TAATGCATCAACAAAGGAAA+GGG | - | chr3_1:94683001-94683020 | None:intergenic | 30.0% | |
| TCTTACTAATGCATCAACAA+AGG | - | chr3_1:94683007-94683026 | None:intergenic | 30.0% | |
| ! | AATGGATTTCATAGTGTTCT+TGG | - | chr3_1:94683040-94683059 | None:intergenic | 30.0% |
| GGAGTATGTAACATACATAA+TGG | - | chr3_1:94683058-94683077 | None:intergenic | 30.0% | |
| TTCAAAAAATGAGAATCGGA+TGG | - | chr3_1:94683079-94683098 | None:intergenic | 30.0% | |
| AATCTCACTAAAATTCTCCA+AGG | + | chr3_1:94683151-94683170 | Msa0389690:CDS | 30.0% | |
| AACAGTTAGAAAATGTCTCT+CGG | + | chr3_1:94683302-94683321 | Msa0389690:intron | 30.0% | |
| ! | ATTAGGAGATTAGCATGTTT+TGG | - | chr3_1:94683365-94683384 | None:intergenic | 30.0% |
| TGCAATAATTCGTATGTTGT+TGG | - | chr3_1:94683691-94683710 | None:intergenic | 30.0% | |
| CATACGAATTATTGCAAACA+TGG | + | chr3_1:94683695-94683714 | Msa0389690:CDS | 30.0% | |
| AGTTTGCAAACAGATTACTA+AGG | - | chr3_1:94683812-94683831 | None:intergenic | 30.0% | |
| GTAAACTGTATCTACTAGTA+TGG | - | chr3_1:94683920-94683939 | None:intergenic | 30.0% | |
| CTAGTAGATACAGTTTACAA+AGG | + | chr3_1:94683922-94683941 | Msa0389690:intron | 30.0% | |
| CAATACATGACTTTATGACA+TGG | - | chr3_1:94683992-94684011 | None:intergenic | 30.0% | |
| ! | ATCAACACTATTGATTGTAC+TGG | + | chr3_1:94684024-94684043 | Msa0389690:intron | 30.0% |
| !! | TTGATTGTACTGGTTAATGA+TGG | + | chr3_1:94684034-94684053 | Msa0389690:intron | 30.0% |
| !!! | CTTTTTATTTAGCTTGCAGA+GGG | + | chr3_1:94684087-94684106 | Msa0389690:CDS | 30.0% |
| !!! | TTTTTATTTAGCTTGCAGAG+GGG | + | chr3_1:94684088-94684107 | Msa0389690:CDS | 30.0% |
| AAACTGAACTTTGTGCAAAA+TGG | - | chr3_1:94684592-94684611 | None:intergenic | 30.0% | |
| !! | ACTGTTGGTTCAAAACTTAT+TGG | + | chr3_1:94684726-94684745 | Msa0389690:CDS | 30.0% |
| CAACAGTGCAAATTAATTTC+TGG | + | chr3_1:94684796-94684815 | Msa0389690:intron | 30.0% | |
| !! | CTTTCTATTTGTTTTTCAGC+TGG | + | chr3_1:94684876-94684895 | Msa0389690:intron | 30.0% |
| TAAATCTGCTAATTTGGAGA+TGG | + | chr3_1:94685133-94685152 | Msa0389690:CDS | 30.0% | |
| ACTTCTTGTTCATAAGGATT+TGG | + | chr3_1:94685304-94685323 | Msa0389690:CDS | 30.0% | |
| ATAGTATTAGTGACGATTTG+CGG | + | chr3_1:94685345-94685364 | Msa0389690:CDS | 30.0% | |
| ATATGAAGAGAATTATCTGC+TGG | + | chr3_1:94685399-94685418 | Msa0389690:intron | 30.0% | |
| TGATCTGTGATCTCAAAAAA+GGG | - | chr3_1:94686016-94686035 | None:intergenic | 30.0% | |
| ATGATCTGTGATCTCAAAAA+AGG | - | chr3_1:94686017-94686036 | None:intergenic | 30.0% | |
| !! | GATCACAGATCATTTTAAAG+TGG | + | chr3_1:94686024-94686043 | Msa0389690:intron | 30.0% |
| !! | TATTTTGGGCTTTAATAGGT+TGG | + | chr3_1:94686223-94686242 | Msa0389690:intron | 30.0% |
| ! | TAAAGTATTAGAAGGAGCAT+CGG | - | chr3_1:94686322-94686341 | None:intergenic | 30.0% |
| TAGCTAATCACAATTATACG+CGG | + | chr3_1:94686436-94686455 | Msa0389690:intron | 30.0% | |
| TCAACGTTTATGACCATAAT+AGG | + | chr3_1:94686484-94686503 | Msa0389690:intron | 30.0% | |
| !! | CTTATTTCTATAAGCTCTCT+TGG | - | chr3_1:94686652-94686671 | None:intergenic | 30.0% |
| ! | CCAAATAGTTGGTGTTTATA+GGG | - | chr3_1:94686782-94686801 | None:intergenic | 30.0% |
| ! | ACCAAATAGTTGGTGTTTAT+AGG | - | chr3_1:94686783-94686802 | None:intergenic | 30.0% |
| TTGGTATATAAACTGATGCA+TGG | + | chr3_1:94686798-94686817 | Msa0389690:intron | 30.0% | |
| GTAGCAAAAATCAAGTAGTT+AGG | - | chr3_1:94686908-94686927 | None:intergenic | 30.0% | |
| ATCACCAATTTCCTAATGTT+GGG | - | chr3_1:94687119-94687138 | None:intergenic | 30.0% | |
| GCTATTTATTTGAACAACTG+TGG | - | chr3_1:94687178-94687197 | None:intergenic | 30.0% | |
| TGTTAAGCGCATAATCATCA+AGG | + | chr3_1:94681193-94681212 | Msa0389690:CDS | 35.0% | |
| TAGCCATTTGCATTATCCAT+TGG | - | chr3_1:94681297-94681316 | None:intergenic | 35.0% | |
| ATGGATAATGCAAATGGCTA+AGG | + | chr3_1:94681297-94681316 | Msa0389690:intron | 35.0% | |
| AATCAGAAACAAACCTCGTA+TGG | - | chr3_1:94682252-94682271 | None:intergenic | 35.0% | |
| GATCAGTATAAAGAAACCCT+TGG | - | chr3_1:94682459-94682478 | None:intergenic | 35.0% | |
| !!! | GTTACCTACTCATTTTTTGC+AGG | + | chr3_1:94682539-94682558 | Msa0389690:intron | 35.0% |
| GAATCCTGCAAAAAATGAGT+AGG | - | chr3_1:94682546-94682565 | None:intergenic | 35.0% | |
| !!! | CATTTTTTGCAGGATTCTTC+TGG | + | chr3_1:94682549-94682568 | Msa0389690:intron | 35.0% |
| ! | AGGATTCTTCTGGCATATTT+TGG | + | chr3_1:94682559-94682578 | Msa0389690:intron | 35.0% |
| ! | GGATTCTTCTGGCATATTTT+GGG | + | chr3_1:94682560-94682579 | Msa0389690:intron | 35.0% |
| ! | TGACAGTTTATCAGCTTTGT+TGG | + | chr3_1:94682587-94682606 | Msa0389690:CDS | 35.0% |
| !!! | AGTTTTGATAGTGGATCACT+TGG | - | chr3_1:94682678-94682697 | None:intergenic | 35.0% |
| !! | TTACTTTTGGAGACAAGTCT+AGG | + | chr3_1:94682736-94682755 | Msa0389690:CDS | 35.0% |
| !! | TACTTTTGGAGACAAGTCTA+GGG | + | chr3_1:94682737-94682756 | Msa0389690:CDS | 35.0% |
| GGTAATGATAACAGGAATTC+CGG | - | chr3_1:94682817-94682836 | None:intergenic | 35.0% | |
| GAATTCCTGTTATCATTACC+AGG | + | chr3_1:94682817-94682836 | Msa0389690:CDS | 35.0% | |
| AATGCATCAACAAAGGAAAG+GGG | - | chr3_1:94683000-94683019 | None:intergenic | 35.0% | |
| CTAATGCATCAACAAAGGAA+AGG | - | chr3_1:94683002-94683021 | None:intergenic | 35.0% | |
| ATGTGCATCTTTATGGAAGA+GGG | - | chr3_1:94683191-94683210 | None:intergenic | 35.0% | |
| TATGTGCATCTTTATGGAAG+AGG | - | chr3_1:94683192-94683211 | None:intergenic | 35.0% | |
| TCCATAAAGATGCACATAAG+TGG | + | chr3_1:94683194-94683213 | Msa0389690:CDS | 35.0% | |
| CCATAAAGATGCACATAAGT+GGG | + | chr3_1:94683195-94683214 | Msa0389690:CDS | 35.0% | |
| ! | GTACATCAACCTCTTTTGAA+GGG | - | chr3_1:94683222-94683241 | None:intergenic | 35.0% |
| ATCTCCTAATCTTACGTTAC+AGG | + | chr3_1:94683375-94683394 | Msa0389690:intron | 35.0% | |
| CTATATAACTGACAGATCGT+AGG | + | chr3_1:94683660-94683679 | Msa0389690:intron | 35.0% | |
| TAATTCGTATGTTGTTGGCA+AGG | - | chr3_1:94683686-94683705 | None:intergenic | 35.0% | |
| !!! | CGTTTTAAAACTCGACCAAT+CGG | - | chr3_1:94683726-94683745 | None:intergenic | 35.0% |
| !!! | TCGAGTTTTAAAACGAACTG+AGG | + | chr3_1:94683731-94683750 | Msa0389690:CDS | 35.0% |
| CCTCTGCAAGCTAAATAAAA+AGG | - | chr3_1:94684089-94684108 | None:intergenic | 35.0% | |
| !!! | CCTTTTTATTTAGCTTGCAG+AGG | + | chr3_1:94684086-94684105 | Msa0389690:CDS | 35.0% |
| ! | CCTTACTTTAGAAAAGCTGT+GGG | + | chr3_1:94684312-94684331 | Msa0389690:intron | 35.0% |
| ATTTGAACAGATAGCTTCCT+TGG | + | chr3_1:94684506-94684525 | Msa0389690:intron | 35.0% | |
| TTGACCCTATCTAAATGTTC+AGG | + | chr3_1:94684680-94684699 | Msa0389690:intron | 35.0% | |
| !!! | AGTTTTGAACCAACAGTATC+AGG | - | chr3_1:94684723-94684742 | None:intergenic | 35.0% |
| TGAAATACCTGAGCTACTTA+AGG | + | chr3_1:94684767-94684786 | Msa0389690:CDS | 35.0% | |
| TGCTCACTTTGAATAGATTG+TGG | + | chr3_1:94684829-94684848 | Msa0389690:intron | 35.0% | |
| TATACTTGCAGTGCTTGATA+TGG | + | chr3_1:94685011-94685030 | Msa0389690:intron | 35.0% | |
| GCAAAAACAGATTATCCATC+AGG | + | chr3_1:94685176-94685195 | Msa0389690:CDS | 35.0% | |
| TCCAACACACTAAATTACCA+TGG | - | chr3_1:94685210-94685229 | None:intergenic | 35.0% | |
| !! | ATGAACAAGAAGTGTTTCCT+AGG | - | chr3_1:94685297-94685316 | None:intergenic | 35.0% |
| GGAAACACTTCTTGTTCATA+AGG | + | chr3_1:94685298-94685317 | Msa0389690:intron | 35.0% | |
| ! | CATAAGGATTTGGTAGAGAA+AGG | + | chr3_1:94685314-94685333 | Msa0389690:CDS | 35.0% |
| !! | GTAGGTGTTACTTTATATGG+AGG | + | chr3_1:94685531-94685550 | Msa0389690:intron | 35.0% |
| ! | TTCAACAGAGAACTTGCTTT+CGG | - | chr3_1:94685558-94685577 | None:intergenic | 35.0% |
| !! | TTGTTGCTATTTCCCCATTA+TGG | + | chr3_1:94685753-94685772 | Msa0389690:intron | 35.0% |
| ATCTTCTGTGACAATGGAAT+CGG | - | chr3_1:94685790-94685809 | None:intergenic | 35.0% | |
| TTCATGATCTTCTGTGACAA+TGG | - | chr3_1:94685796-94685815 | None:intergenic | 35.0% | |
| ! | ATCATCAGTAGCTTTTGCTA+AGG | + | chr3_1:94686178-94686197 | Msa0389690:intron | 35.0% |
| ! | ATGGATTGTTAACAACCAGA+TGG | + | chr3_1:94686290-94686309 | Msa0389690:CDS | 35.0% |
| TATCCAAACAAGGCCTATTA+TGG | - | chr3_1:94686500-94686519 | None:intergenic | 35.0% | |
| TTCTATAAGCTCTCTTGGAT+AGG | - | chr3_1:94686647-94686666 | None:intergenic | 35.0% | |
| AGAGCTATGGAAACATCTTA+TGG | - | chr3_1:94686697-94686716 | None:intergenic | 35.0% | |
| CCCTATAAACACCAACTATT+TGG | + | chr3_1:94686779-94686798 | Msa0389690:intron | 35.0% | |
| GATTATTCATTTGCCAATGC+AGG | + | chr3_1:94686820-94686839 | Msa0389690:intron | 35.0% | |
| TCAAGTAGTTAGGTCTTTGT+GGG | - | chr3_1:94686898-94686917 | None:intergenic | 35.0% | |
| ATCAAGTAGTTAGGTCTTTG+TGG | - | chr3_1:94686899-94686918 | None:intergenic | 35.0% | |
| TTTCTTCTGTGTTCAGAGTT+AGG | + | chr3_1:94686994-94687013 | Msa0389690:three_prime_UTR | 35.0% | |
| GATCACCAATTTCCTAATGT+TGG | - | chr3_1:94687120-94687139 | None:intergenic | 35.0% | |
| GACAAAATCTCTACAAGGGT+CGG | - | chr3_1:94681168-94681187 | None:intergenic | 40.0% | |
| CAACTGCTAATCTTCCATCT+TGG | - | chr3_1:94681373-94681392 | None:intergenic | 40.0% | |
| CAAGATGGAAGATTAGCAGT+TGG | + | chr3_1:94681371-94681390 | Msa0389690:CDS | 40.0% | |
| ! | TACATACCGTTTGAAGTGCT+AGG | + | chr3_1:94681737-94681756 | Msa0389690:intron | 40.0% |
| ! | ACATACCGTTTGAAGTGCTA+GGG | + | chr3_1:94681738-94681757 | Msa0389690:intron | 40.0% |
| TATACCCCTAGCACTTCAAA+CGG | - | chr3_1:94681746-94681765 | None:intergenic | 40.0% | |
| ! | AAGCCACAAGTTGAACTTGA+TGG | + | chr3_1:94681856-94681875 | Msa0389690:CDS | 40.0% |
| TTGCCATCAAGTTCAACTTG+TGG | - | chr3_1:94681862-94681881 | None:intergenic | 40.0% | |
| ! | ACAAGTTGAACTTGATGGCA+AGG | + | chr3_1:94681861-94681880 | Msa0389690:CDS | 40.0% |
| GCGTCGTTCTCATTGAATAT+TGG | - | chr3_1:94682210-94682229 | None:intergenic | 40.0% | |
| !! | TTTATCAGCTTTGTTGGCCT+TGG | + | chr3_1:94682593-94682612 | Msa0389690:CDS | 40.0% |
| !! | TTGATAGTGGATCACTTGGA+GGG | - | chr3_1:94682674-94682693 | None:intergenic | 40.0% |
| !! | TTTGATAGTGGATCACTTGG+AGG | - | chr3_1:94682675-94682694 | None:intergenic | 40.0% |
| AAATAAATCAGCAGTGCACC+TGG | - | chr3_1:94682838-94682857 | None:intergenic | 40.0% | |
| ATGCATCAACAAAGGAAAGG+GGG | - | chr3_1:94682999-94683018 | None:intergenic | 40.0% | |
| CCCACTTATGTGCATCTTTA+TGG | - | chr3_1:94683198-94683217 | None:intergenic | 40.0% | |
| ! | CGTACATCAACCTCTTTTGA+AGG | - | chr3_1:94683223-94683242 | None:intergenic | 40.0% |
| ! | ACTGAAGCTTGGTAATATCC+AGG | - | chr3_1:94683330-94683349 | None:intergenic | 40.0% |
| ACGAACGATATACTGAAGCT+TGG | - | chr3_1:94683341-94683360 | None:intergenic | 40.0% | |
| TTTCCTTTCTTCCGAAGACA+CGG | - | chr3_1:94683401-94683420 | None:intergenic | 40.0% | |
| AATCACGTGAGAAAGAGATC+AGG | + | chr3_1:94683452-94683471 | Msa0389690:CDS | 40.0% | |
| AGCAGGATACGAAAAATCCT+TGG | + | chr3_1:94683510-94683529 | Msa0389690:CDS | 40.0% | |
| ACGAAAAATCCTTGGTTGCT+AGG | + | chr3_1:94683518-94683537 | Msa0389690:CDS | 40.0% | |
| !!! | GCTGGTTTTAAAGAGTGAGA+AGG | + | chr3_1:94683540-94683559 | Msa0389690:CDS | 40.0% |
| GAGAAAACGTCATCTCCTTT+GGG | + | chr3_1:94684119-94684138 | Msa0389690:CDS | 40.0% | |
| TTACCTGTACCAATGCATCA+GGG | - | chr3_1:94684172-94684191 | None:intergenic | 40.0% | |
| TTTACCTGTACCAATGCATC+AGG | - | chr3_1:94684173-94684192 | None:intergenic | 40.0% | |
| ! | GCCTTACTTTAGAAAAGCTG+TGG | + | chr3_1:94684311-94684330 | Msa0389690:intron | 40.0% |
| !!! | CCCACAGCTTTTCTAAAGTA+AGG | - | chr3_1:94684315-94684334 | None:intergenic | 40.0% |
| ! | ACTTTAGAAAAGCTGTGGGT+CGG | + | chr3_1:94684316-94684335 | Msa0389690:intron | 40.0% |
| TGAACCAACAGTATCAGGTA+TGG | - | chr3_1:94684718-94684737 | None:intergenic | 40.0% | |
| GTATTCACCTTAAGTAGCTC+AGG | - | chr3_1:94684777-94684796 | None:intergenic | 40.0% | |
| GCTGGATGATGTAATTGATC+TGG | + | chr3_1:94684894-94684913 | Msa0389690:intron | 40.0% | |
| ATTGATCTGGTGATTCCAAG+AGG | + | chr3_1:94684907-94684926 | Msa0389690:CDS | 40.0% | |
| ACAAGTTTATTGCTGCCTCT+TGG | - | chr3_1:94684925-94684944 | None:intergenic | 40.0% | |
| TTGCAGTGCTTGATATGGTA+TGG | + | chr3_1:94685016-94685035 | Msa0389690:intron | 40.0% | |
| GCCATGGTAATTTAGTGTGT+TGG | + | chr3_1:94685206-94685225 | Msa0389690:intron | 40.0% | |
| TATTAGTGACGATTTGCGGT+CGG | + | chr3_1:94685349-94685368 | Msa0389690:CDS | 40.0% | |
| TGATGTAATGAACGAGCAAG+TGG | - | chr3_1:94685585-94685604 | None:intergenic | 40.0% | |
| ! | ACATCATGAGTACTGTTCGT+TGG | + | chr3_1:94685599-94685618 | Msa0389690:CDS | 40.0% |
| AACATCATCCACGATTTCCA+AGG | - | chr3_1:94685631-94685650 | None:intergenic | 40.0% | |
| TATTTCTTCGTCAAGTCGAC+AGG | + | chr3_1:94685826-94685845 | Msa0389690:CDS | 40.0% | |
| AACAATCCATCAACTCCTAC+TGG | - | chr3_1:94686280-94686299 | None:intergenic | 40.0% | |
| !! | TGACCATAATAGGCCTTGTT+TGG | + | chr3_1:94686494-94686513 | Msa0389690:intron | 40.0% |
| ! | TGGTGTTTATAGGGCTTGTT+TGG | - | chr3_1:94686773-94686792 | None:intergenic | 40.0% |
| CATGTTTCCTTCCCAACATT+AGG | + | chr3_1:94687105-94687124 | Msa0389690:three_prime_UTR | 40.0% | |
| CCAATTTCCTAATGTTGGGA+AGG | - | chr3_1:94687115-94687134 | None:intergenic | 40.0% | |
| CCTTCCCAACATTAGGAAAT+TGG | + | chr3_1:94687112-94687131 | Msa0389690:three_prime_UTR | 40.0% | |
| ! | TTGGTTTCATCAGGTGCTGT+CGG | + | chr3_1:94681548-94681567 | Msa0389690:CDS | 45.0% |
| GTCGACAAAGGCTTAGATAC+AGG | + | chr3_1:94681576-94681595 | Msa0389690:CDS | 45.0% | |
| ! | CATACCGTTTGAAGTGCTAG+GGG | + | chr3_1:94681739-94681758 | Msa0389690:intron | 45.0% |
| GTTCAACTTGTGGCTTCTGA+AGG | - | chr3_1:94681852-94681871 | None:intergenic | 45.0% | |
| TGTTGGACAAAGCAGCCTTA+TGG | + | chr3_1:94681894-94681913 | Msa0389690:CDS | 45.0% | |
| CTACCTGTTTGTCTTGTAGC+TGG | + | chr3_1:94682077-94682096 | Msa0389690:intron | 45.0% | |
| CATCCAGCTACAAGACAAAC+AGG | - | chr3_1:94682083-94682102 | None:intergenic | 45.0% | |
| TACTAGGAAAGCTCCATACG+AGG | + | chr3_1:94682236-94682255 | Msa0389690:CDS | 45.0% | |
| ! | TTTGGAGACAAGTCTAGGGT+TGG | + | chr3_1:94682741-94682760 | Msa0389690:CDS | 45.0% |
| ! | ACAAGTCTAGGGTTGGAAGA+GGG | + | chr3_1:94682748-94682767 | Msa0389690:CDS | 45.0% |
| ! | GTGCACCTGGTAATGATAAC+AGG | - | chr3_1:94682825-94682844 | None:intergenic | 45.0% |
| ATTCTCCAAGGACAGCGTAT+TGG | + | chr3_1:94683163-94683182 | Msa0389690:CDS | 45.0% | |
| TAAGTGGGTCCCTTCAAAAG+AGG | + | chr3_1:94683210-94683229 | Msa0389690:CDS | 45.0% | |
| AGAAAATGTCTCTCGGATCC+TGG | + | chr3_1:94683309-94683328 | Msa0389690:intron | 45.0% | |
| ACGGCCTGTAACGTAAGATT+AGG | - | chr3_1:94683382-94683401 | None:intergenic | 45.0% | |
| AAAATCCTTGGTTGCTAGGC+TGG | + | chr3_1:94683522-94683541 | Msa0389690:CDS | 45.0% | |
| TAAAACCAGCCTAGCAACCA+AGG | - | chr3_1:94683530-94683549 | None:intergenic | 45.0% | |
| GCAAACATGGAAGATCCGAT+TGG | + | chr3_1:94683708-94683727 | Msa0389690:CDS | 45.0% | |
| AGCTTGCAGAGGGGTTAATT+TGG | + | chr3_1:94684097-94684116 | Msa0389690:CDS | 45.0% | |
| GGAGAAAACGTCATCTCCTT+TGG | + | chr3_1:94684118-94684137 | Msa0389690:CDS | 45.0% | |
| AGATACTGTCTACCAAGCTG+TGG | + | chr3_1:94684283-94684302 | Msa0389690:intron | 45.0% | |
| GATACTGTCTACCAAGCTGT+GGG | + | chr3_1:94684284-94684303 | Msa0389690:intron | 45.0% | |
| CTTCCTTGGCAATACGAAGT+GGG | + | chr3_1:94684520-94684539 | Msa0389690:CDS | 45.0% | |
| ATTCCCACTTCGTATTGCCA+AGG | - | chr3_1:94684526-94684545 | None:intergenic | 45.0% | |
| TTGGCAATACGAAGTGGGAA+TGG | + | chr3_1:94684525-94684544 | Msa0389690:CDS | 45.0% | |
| TGGCAATACGAAGTGGGAAT+GGG | + | chr3_1:94684526-94684545 | Msa0389690:CDS | 45.0% | |
| ! | AATGGGCTTCTCTTGAAAGG+AGG | + | chr3_1:94684543-94684562 | Msa0389690:CDS | 45.0% |
| GAAGCCATACCTGATACTGT+TGG | + | chr3_1:94684711-94684730 | Msa0389690:CDS | 45.0% | |
| TGTGGCACATTTCACTAAGC+TGG | + | chr3_1:94684847-94684866 | Msa0389690:intron | 45.0% | |
| TCGACGAAAATCCCTGTTCT+AGG | + | chr3_1:94684961-94684980 | Msa0389690:CDS | 45.0% | |
| TACCAGCATGACCTAGAACA+GGG | - | chr3_1:94684975-94684994 | None:intergenic | 45.0% | |
| TTACCAGCATGACCTAGAAC+AGG | - | chr3_1:94684976-94684995 | None:intergenic | 45.0% | |
| ! | AGGATTTGGTAGAGAAAGGC+TGG | + | chr3_1:94685318-94685337 | Msa0389690:CDS | 45.0% |
| GTATGTGCACTGCCATAATG+GGG | - | chr3_1:94685768-94685787 | None:intergenic | 45.0% | |
| GGTATGTGCACTGCCATAAT+GGG | - | chr3_1:94685769-94685788 | None:intergenic | 45.0% | |
| GCTAGTACAAGATTCAGCGA+TGG | + | chr3_1:94686101-94686120 | Msa0389690:CDS | 45.0% | |
| ! | GATGGAGCACGATTTGGATT+AGG | + | chr3_1:94686119-94686138 | Msa0389690:CDS | 45.0% |
| AGGTTGGAATAAGCACAAGC+AGG | + | chr3_1:94686239-94686258 | Msa0389690:intron | 45.0% | |
| GCGACTGTTTATGAGAGCTA+TGG | - | chr3_1:94686710-94686729 | None:intergenic | 45.0% | |
| ! | TTCCTTTGAGAAGCCTGCAT+TGG | - | chr3_1:94686836-94686855 | None:intergenic | 45.0% |
| GGAAGTGGACAAGTAGTAGA+TGG | + | chr3_1:94686852-94686871 | Msa0389690:CDS | 45.0% | |
| AGTTAGGTCTTTGTGGGTGT+AGG | - | chr3_1:94686892-94686911 | None:intergenic | 45.0% | |
| TGAAAATCCGCATGAAGCGA+CGG | + | chr3_1:94686928-94686947 | Msa0389690:three_prime_UTR | 45.0% | |
| !!! | TTTTTTTCAATTTTATTTTA+AGG | + | chr3_1:94681777-94681796 | Msa0389690:intron | 5.0% |
| !! | AATTTAAATAACATATATTA+AGG | - | chr3_1:94685268-94685287 | None:intergenic | 5.0% |
| !!! | TTAATTTATCATTATATTTT+GGG | + | chr3_1:94686209-94686228 | Msa0389690:intron | 5.0% |
| GTGGAGAGAAACAGGGATGA+AGG | - | chr3_1:94681125-94681144 | None:intergenic | 50.0% | |
| !! | CGGTTTGGTGGAGAGAAACA+GGG | - | chr3_1:94681132-94681151 | None:intergenic | 50.0% |
| !! | TCGGTTTGGTGGAGAGAAAC+AGG | - | chr3_1:94681133-94681152 | None:intergenic | 50.0% |
| TCTCTCCACCAAACCGAAGA+TGG | + | chr3_1:94681136-94681155 | Msa0389690:exon | 50.0% | |
| GCTGTTGTTACTCGCCAAGA+TGG | + | chr3_1:94681356-94681375 | Msa0389690:CDS | 50.0% | |
| !! | ATTAGGGGCACTATGTGAGC+AGG | + | chr3_1:94681397-94681416 | Msa0389690:CDS | 50.0% |
| ATCTAAGCCTTTGTCGACCG+AGG | - | chr3_1:94681574-94681593 | None:intergenic | 50.0% | |
| ATGGGGGCTTCACAACAACA+TGG | + | chr3_1:94681658-94681677 | Msa0389690:intron | 50.0% | |
| TGGGGGCTTCACAACAACAT+GGG | + | chr3_1:94681659-94681678 | Msa0389690:intron | 50.0% | |
| AGAACGACGCAGTCAGTACT+AGG | + | chr3_1:94682220-94682239 | Msa0389690:CDS | 50.0% | |
| ! | GACAAGTCTAGGGTTGGAAG+AGG | + | chr3_1:94682747-94682766 | Msa0389690:CDS | 50.0% |
| ! | CAAGTCTAGGGTTGGAAGAG+GGG | + | chr3_1:94682749-94682768 | Msa0389690:CDS | 50.0% |
| ! | AAGTCTAGGGTTGGAAGAGG+GGG | + | chr3_1:94682750-94682769 | Msa0389690:CDS | 50.0% |
| TCTGTTCATGCTGCTGATGC+CGG | + | chr3_1:94682795-94682814 | Msa0389690:CDS | 50.0% | |
| !! | AGAGGTTGATGTACGCGAGA+TGG | + | chr3_1:94683228-94683247 | Msa0389690:CDS | 50.0% |
| TAAAGAGACCTGAAGCCGTC+TGG | - | chr3_1:94683275-94683294 | None:intergenic | 50.0% | |
| TACGTTACAGGCCGTGTCTT+CGG | + | chr3_1:94683387-94683406 | Msa0389690:intron | 50.0% | |
| GTTGTTGCTGCACAAGAAGC+AGG | + | chr3_1:94683493-94683512 | Msa0389690:CDS | 50.0% | |
| GCTTCCTTGGCAATACGAAG+TGG | + | chr3_1:94684519-94684538 | Msa0389690:CDS | 50.0% | |
| ! | GGGAATGGGCTTCTCTTGAA+AGG | + | chr3_1:94684540-94684559 | Msa0389690:CDS | 50.0% |
| GCTTCTCTTGAAAGGAGGCA+AGG | + | chr3_1:94684548-94684567 | Msa0389690:CDS | 50.0% | |
| TCTCTTGAAAGGAGGCAAGG+AGG | + | chr3_1:94684551-94684570 | Msa0389690:CDS | 50.0% | |
| ! | ATCCCTGTTCTAGGTCATGC+TGG | + | chr3_1:94684970-94684989 | Msa0389690:CDS | 50.0% |
| TCCATCAGGATGCAATGCCA+TGG | + | chr3_1:94685190-94685209 | Msa0389690:CDS | 50.0% | |
| ACCATGGCATTGCATCCTGA+TGG | - | chr3_1:94685194-94685213 | None:intergenic | 50.0% | |
| CGGTATGTGCACTGCCATAA+TGG | - | chr3_1:94685770-94685789 | None:intergenic | 50.0% | |
| TTCAGCGATGGAGCACGATT+TGG | + | chr3_1:94686113-94686132 | Msa0389690:CDS | 50.0% | |
| ! | ACGATTTGGATTAGGCGCAG+AGG | + | chr3_1:94686127-94686146 | Msa0389690:CDS | 50.0% |
| GCACAAGCAGGATTCATGCT+CGG | + | chr3_1:94686251-94686270 | Msa0389690:CDS | 50.0% | |
| CACAAGCAGGATTCATGCTC+GGG | + | chr3_1:94686252-94686271 | Msa0389690:CDS | 50.0% | |
| ACAAGCAGGATTCATGCTCG+GGG | + | chr3_1:94686253-94686272 | Msa0389690:CDS | 50.0% | |
| !! | GAGCATCGGCTTATACCATC+TGG | - | chr3_1:94686308-94686327 | None:intergenic | 50.0% |
| TGCCAATGCAGGCTTCTCAA+AGG | + | chr3_1:94686831-94686850 | Msa0389690:intron | 50.0% | |
| TGCAGGCTTCTCAAAGGAAG+TGG | + | chr3_1:94686837-94686856 | Msa0389690:intron | 50.0% | |
| !! | GTTCGCCATCTTCGGTTTGG+TGG | - | chr3_1:94681144-94681163 | None:intergenic | 55.0% |
| GGGGGCTTCACAACAACATG+GGG | + | chr3_1:94681660-94681679 | Msa0389690:intron | 55.0% | |
| GGGGCTTCACAACAACATGG+GGG | + | chr3_1:94681661-94681680 | Msa0389690:intron | 55.0% | |
| GGGCTTCACAACAACATGGG+GGG | + | chr3_1:94681662-94681681 | Msa0389690:intron | 55.0% | |
| GGGTACCAATACGCTGTCCT+TGG | - | chr3_1:94683171-94683190 | None:intergenic | 55.0% | |
| AGGCCGTGTCTTCGGAAGAA+AGG | + | chr3_1:94683395-94683414 | Msa0389690:intron | 55.0% | |
| ! | TCGCCCTGATGCATTGGTAC+AGG | + | chr3_1:94684166-94684185 | Msa0389690:CDS | 55.0% |
| CTGTCTACCAAGCTGTGGGT+CGG | + | chr3_1:94684288-94684307 | Msa0389690:intron | 55.0% | |
| TGTCTACCAAGCTGTGGGTC+GGG | + | chr3_1:94684289-94684308 | Msa0389690:intron | 55.0% | |
| AGTGACGATTTGCGGTCGGA+AGG | + | chr3_1:94685353-94685372 | Msa0389690:CDS | 55.0% | |
| !! | CTGTTCGTTGGCTTGCACCT+TGG | + | chr3_1:94685611-94685630 | Msa0389690:CDS | 55.0% |
| GGCTTGCACCTTGGAAATCG+TGG | + | chr3_1:94685620-94685639 | Msa0389690:CDS | 55.0% | |
| ATTCATGCTCGGGGTCCAGT+AGG | + | chr3_1:94686262-94686281 | Msa0389690:CDS | 55.0% | |
| GGCGTTCGCCATCTTCGGTT+TGG | - | chr3_1:94681147-94681166 | None:intergenic | 60.0% | |
| ! | TCATCAGGTGCTGTCGGCCT+CGG | + | chr3_1:94681554-94681573 | Msa0389690:CDS | 60.0% |
| ! | GGCAAGGCTTGTGCTGCTGT+TGG | + | chr3_1:94681877-94681896 | Msa0389690:CDS | 60.0% |
| CGAGATGGCTGTTGCCGCTA+GGG | + | chr3_1:94683243-94683262 | Msa0389690:CDS | 60.0% | |
| ! | CCGTCTGGAACAGTCCCTAG+CGG | - | chr3_1:94683260-94683279 | None:intergenic | 60.0% |
| CCGCTAGGGACTGTTCCAGA+CGG | + | chr3_1:94683257-94683276 | Msa0389690:CDS | 60.0% | |
| GGACTGTTCCAGACGGCTTC+AGG | + | chr3_1:94683264-94683283 | Msa0389690:CDS | 60.0% | |
| CGAGTCTCGCCCTGATGCAT+TGG | + | chr3_1:94684160-94684179 | Msa0389690:CDS | 60.0% | |
| CGGGGTCCAGTAGGAGTTGA+TGG | + | chr3_1:94686271-94686290 | Msa0389690:CDS | 60.0% | |
| AATCCGCATGAAGCGACGGC+AGG | + | chr3_1:94686932-94686951 | Msa0389690:three_prime_UTR | 60.0% | |
| TTGCCTGCCGTCGCTTCATG+CGG | - | chr3_1:94686938-94686957 | None:intergenic | 60.0% | |
| GGGTCGGCGTTCGCCATCTT+CGG | - | chr3_1:94681152-94681171 | None:intergenic | 65.0% | |
| CTGTCGGCCTCGGTCGACAA+AGG | + | chr3_1:94681564-94681583 | Msa0389690:CDS | 65.0% | |
| GCGAGATGGCTGTTGCCGCT+AGG | + | chr3_1:94683242-94683261 | Msa0389690:CDS | 65.0% | |
| GTAAGGCCCGACCCACAGCT+TGG | - | chr3_1:94684298-94684317 | None:intergenic | 65.0% | |
| GCATGAAGCGACGGCAGGCA+AGG | + | chr3_1:94686937-94686956 | Msa0389690:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 94681069 | 94687271 | 94681069 | ID=Msa0389690;Name=Msa0389690 |
| chr3_1 | mRNA | 94681069 | 94687271 | 94681069 | ID=Msa0389690-mRNA-1;Parent=Msa0389690;Name=Msa0389690-mRNA-1;_AED=0.15;_eAED=0.15;_QI=86|0.89|0.9|1|1|1|20|354|723 |
| chr3_1 | exon | 94681069 | 94681214 | 94681069 | ID=Msa0389690-mRNA-1:exon:26914;Parent=Msa0389690-mRNA-1 |
| chr3_1 | exon | 94681347 | 94681418 | 94681347 | ID=Msa0389690-mRNA-1:exon:26915;Parent=Msa0389690-mRNA-1 |
| chr3_1 | exon | 94681512 | 94681615 | 94681512 | ID=Msa0389690-mRNA-1:exon:26916;Parent=Msa0389690-mRNA-1 |
| chr3_1 | exon | 94681840 | 94681942 | 94681840 | ID=Msa0389690-mRNA-1:exon:26917;Parent=Msa0389690-mRNA-1 |
| chr3_1 | exon | 94682096 | 94682257 | 94682096 | ID=Msa0389690-mRNA-1:exon:26918;Parent=Msa0389690-mRNA-1 |
| chr3_1 | exon | 94682561 | 94682838 | 94682561 | ID=Msa0389690-mRNA-1:exon:26919;Parent=Msa0389690-mRNA-1 |
| chr3_1 | exon | 94683135 | 94683285 | 94683135 | ID=Msa0389690-mRNA-1:exon:26920;Parent=Msa0389690-mRNA-1 |
| chr3_1 | exon | 94683397 | 94683577 | 94683397 | ID=Msa0389690-mRNA-1:exon:26921;Parent=Msa0389690-mRNA-1 |
| chr3_1 | exon | 94683682 | 94683752 | 94683682 | ID=Msa0389690-mRNA-1:exon:26922;Parent=Msa0389690-mRNA-1 |
| chr3_1 | exon | 94684083 | 94684187 | 94684083 | ID=Msa0389690-mRNA-1:exon:26923;Parent=Msa0389690-mRNA-1 |
| chr3_1 | exon | 94684516 | 94684602 | 94684516 | ID=Msa0389690-mRNA-1:exon:26924;Parent=Msa0389690-mRNA-1 |
| chr3_1 | exon | 94684702 | 94684788 | 94684702 | ID=Msa0389690-mRNA-1:exon:26925;Parent=Msa0389690-mRNA-1 |
| chr3_1 | exon | 94684895 | 94684991 | 94684895 | ID=Msa0389690-mRNA-1:exon:26926;Parent=Msa0389690-mRNA-1 |
| chr3_1 | exon | 94685108 | 94685211 | 94685108 | ID=Msa0389690-mRNA-1:exon:26927;Parent=Msa0389690-mRNA-1 |
| chr3_1 | exon | 94685299 | 94685374 | 94685299 | ID=Msa0389690-mRNA-1:exon:26928;Parent=Msa0389690-mRNA-1 |
| chr3_1 | exon | 94685535 | 94685685 | 94685535 | ID=Msa0389690-mRNA-1:exon:26929;Parent=Msa0389690-mRNA-1 |
| chr3_1 | exon | 94685779 | 94685847 | 94685779 | ID=Msa0389690-mRNA-1:exon:26930;Parent=Msa0389690-mRNA-1 |
| chr3_1 | exon | 94686082 | 94686148 | 94686082 | ID=Msa0389690-mRNA-1:exon:26931;Parent=Msa0389690-mRNA-1 |
| chr3_1 | exon | 94686241 | 94686311 | 94686241 | ID=Msa0389690-mRNA-1:exon:26932;Parent=Msa0389690-mRNA-1 |
| chr3_1 | exon | 94686842 | 94687271 | 94686842 | ID=Msa0389690-mRNA-1:exon:26933;Parent=Msa0389690-mRNA-1 |
| chr3_1 | five_prime_UTR | 94681069 | 94681154 | 94681069 | ID=Msa0389690-mRNA-1:five_prime_utr;Parent=Msa0389690-mRNA-1 |
| chr3_1 | CDS | 94681155 | 94681214 | 94681155 | ID=Msa0389690-mRNA-1:cds;Parent=Msa0389690-mRNA-1 |
| chr3_1 | CDS | 94681347 | 94681418 | 94681347 | ID=Msa0389690-mRNA-1:cds;Parent=Msa0389690-mRNA-1 |
| chr3_1 | CDS | 94681512 | 94681615 | 94681512 | ID=Msa0389690-mRNA-1:cds;Parent=Msa0389690-mRNA-1 |
| chr3_1 | CDS | 94681840 | 94681942 | 94681840 | ID=Msa0389690-mRNA-1:cds;Parent=Msa0389690-mRNA-1 |
| chr3_1 | CDS | 94682096 | 94682257 | 94682096 | ID=Msa0389690-mRNA-1:cds;Parent=Msa0389690-mRNA-1 |
| chr3_1 | CDS | 94682561 | 94682838 | 94682561 | ID=Msa0389690-mRNA-1:cds;Parent=Msa0389690-mRNA-1 |
| chr3_1 | CDS | 94683135 | 94683285 | 94683135 | ID=Msa0389690-mRNA-1:cds;Parent=Msa0389690-mRNA-1 |
| chr3_1 | CDS | 94683397 | 94683577 | 94683397 | ID=Msa0389690-mRNA-1:cds;Parent=Msa0389690-mRNA-1 |
| chr3_1 | CDS | 94683682 | 94683752 | 94683682 | ID=Msa0389690-mRNA-1:cds;Parent=Msa0389690-mRNA-1 |
| chr3_1 | CDS | 94684083 | 94684187 | 94684083 | ID=Msa0389690-mRNA-1:cds;Parent=Msa0389690-mRNA-1 |
| chr3_1 | CDS | 94684516 | 94684602 | 94684516 | ID=Msa0389690-mRNA-1:cds;Parent=Msa0389690-mRNA-1 |
| chr3_1 | CDS | 94684702 | 94684788 | 94684702 | ID=Msa0389690-mRNA-1:cds;Parent=Msa0389690-mRNA-1 |
| chr3_1 | CDS | 94684895 | 94684991 | 94684895 | ID=Msa0389690-mRNA-1:cds;Parent=Msa0389690-mRNA-1 |
| chr3_1 | CDS | 94685108 | 94685211 | 94685108 | ID=Msa0389690-mRNA-1:cds;Parent=Msa0389690-mRNA-1 |
| chr3_1 | CDS | 94685299 | 94685374 | 94685299 | ID=Msa0389690-mRNA-1:cds;Parent=Msa0389690-mRNA-1 |
| chr3_1 | CDS | 94685535 | 94685685 | 94685535 | ID=Msa0389690-mRNA-1:cds;Parent=Msa0389690-mRNA-1 |
| chr3_1 | CDS | 94685779 | 94685847 | 94685779 | ID=Msa0389690-mRNA-1:cds;Parent=Msa0389690-mRNA-1 |
| chr3_1 | CDS | 94686082 | 94686148 | 94686082 | ID=Msa0389690-mRNA-1:cds;Parent=Msa0389690-mRNA-1 |
| chr3_1 | CDS | 94686241 | 94686311 | 94686241 | ID=Msa0389690-mRNA-1:cds;Parent=Msa0389690-mRNA-1 |
| chr3_1 | CDS | 94686842 | 94686917 | 94686842 | ID=Msa0389690-mRNA-1:cds;Parent=Msa0389690-mRNA-1 |
| chr3_1 | three_prime_UTR | 94686918 | 94687271 | 94686918 | ID=Msa0389690-mRNA-1:three_prime_utr;Parent=Msa0389690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
