AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0427730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427730 MtrunA17_Chr3g0130651 98.927 466 4 1 1 466 1 465 0.0 938
Msa0427730 MtrunA17_Chr8g0384661 70.968 465 127 2 7 469 36 494 0.0 699
Msa0427730 MtrunA17_Chr3g0130641 71.368 468 131 2 4 469 11 477 0.0 698
Msa0427730 MtrunA17_Chr3g0125091 68.008 472 143 4 4 469 11 480 0.0 677
Msa0427730 MtrunA17_Chr3g0125081 67.516 471 146 3 4 469 11 479 0.0 677
Msa0427730 MtrunA17_Chr3g0125101 66.737 472 149 4 4 469 11 480 0.0 661
Msa0427730 MtrunA17_Chr4g0037201 63.674 479 163 3 2 469 34 512 0.0 645
Msa0427730 MtrunA17_Chr1g0159761 66.737 472 146 4 4 469 9 475 0.0 645
Msa0427730 MtrunA17_Chr3g0140761 56.438 466 196 4 7 465 13 478 0.0 540
Msa0427730 MtrunA17_Chr1g0146491 56.077 469 199 4 7 468 3 471 0.0 539
Msa0427730 MtrunA17_Chr1g0206871 54.585 458 192 5 26 468 14 470 6.30e-178 506
Msa0427730 MtrunA17_Chr1g0206821 49.903 517 192 7 16 465 11 527 6.21e-173 496
Msa0427730 MtrunA17_Chr3g0103231 51.121 446 211 3 15 455 11 454 1.67e-166 477
Msa0427730 MtrunA17_Chr1g0146411 49.467 469 224 6 2 465 9 469 1.87e-163 470
Msa0427730 MtrunA17_Chr3g0140531 49.682 471 227 5 1 465 1 467 2.75e-159 459
Msa0427730 MtrunA17_Chr3g0103211 50.340 441 212 3 20 455 16 454 1.95e-158 456
Msa0427730 MtrunA17_Chr3g0103221 49.775 444 216 3 25 463 28 469 2.61e-158 457
Msa0427730 MtrunA17_Chr5g0447221 50.000 438 210 5 24 455 26 460 4.79e-158 456
Msa0427730 MtrunA17_Chr1g0146331 49.115 452 220 5 21 465 14 462 1.24e-157 455
Msa0427730 MtrunA17_Chr2g0293331 49.556 450 222 3 20 465 5 453 1.05e-156 452
Msa0427730 MtrunA17_Chr1g0146391 48.444 450 227 3 21 466 6 454 8.56e-154 445
Msa0427730 MtrunA17_Chr3g0103271 49.660 441 214 4 21 455 21 459 4.97e-151 438
Msa0427730 MtrunA17_Chr3g0140541 47.660 470 233 5 1 465 5 466 3.36e-146 426
Msa0427730 MtrunA17_Chr1g0206851 51.630 368 165 5 108 468 19 380 1.40e-132 388
Msa0427730 MtrunA17_Chr5g0447231 44.266 436 235 4 26 455 24 457 2.86e-132 390
Msa0427730 MtrunA17_Chr5g0402151 64.407 295 70 4 30 322 3 264 6.00e-124 362
Msa0427730 MtrunA17_Chr1g0206831 54.573 328 136 5 140 460 14 335 7.64e-119 351
Msa0427730 MtrunA17_Chr3g0103251 49.143 350 142 4 140 455 20 367 1.98e-115 344
Msa0427730 MtrunA17_Chr3g0130671 69.869 229 69 0 7 235 19 247 2.05e-113 335
Msa0427730 MtrunA17_Chr3g0130661 66.854 178 57 1 291 466 1 178 1.03e-83 255
Msa0427730 MtrunA17_Chr6g0458931 29.185 466 286 11 12 463 17 452 6.88e-51 179
Msa0427730 MtrunA17_Chr8g0376991 28.319 452 286 10 23 466 15 436 7.37e-46 165
Msa0427730 MtrunA17_Chr2g0331721 28.289 456 282 10 23 466 39 461 8.98e-46 165
Msa0427730 MtrunA17_Chr4g0057851 28.959 442 276 10 28 463 11 420 2.18e-45 163
Msa0427730 MtrunA17_Chr3g0077651 28.409 440 285 7 28 463 53 466 2.26e-43 159
Msa0427730 MtrunA17_Chr1g0184721 27.468 466 298 12 10 465 2 437 2.48e-43 158
Msa0427730 MtrunA17_Chr7g0230011 29.677 465 269 12 21 462 10 439 1.90e-41 153
Msa0427730 MtrunA17_Chr6g0459021 29.175 473 294 12 1 463 3 444 2.95e-40 150
Msa0427730 MtrunA17_Chr5g0422741 29.299 471 289 13 6 466 3 439 1.19e-39 148
Msa0427730 MtrunA17_Chr6g0458921 29.252 441 277 9 28 463 15 425 2.12e-39 147
Msa0427730 MtrunA17_Chr3g0122921 27.696 473 279 13 4 466 9 428 2.49e-39 147
Msa0427730 MtrunA17_Chr6g0459031 28.540 452 284 10 21 463 4 425 8.73e-39 145
Msa0427730 MtrunA17_Chr6g0459011 29.953 424 259 10 43 460 1 392 1.09e-38 144
Msa0427730 MtrunA17_Chr2g0328081 29.204 452 281 10 21 463 4 425 9.95e-37 140
Msa0427730 MtrunA17_Chr1g0198531 27.447 470 290 14 10 466 6 437 1.85e-35 136
Msa0427730 MtrunA17_Chr6g0459001 27.992 493 297 10 2 463 8 473 5.17e-35 136
Msa0427730 MtrunA17_Chr1g0206841 64.516 93 33 0 16 108 10 102 6.40e-34 123
Msa0427730 MtrunA17_Chr4g0027241 27.716 451 289 14 26 467 39 461 1.98e-33 131
Msa0427730 MtrunA17_Chr1g0198541 25.738 474 299 12 7 466 3 437 1.20e-32 129
Msa0427730 MtrunA17_Chr3g0103261 45.255 137 74 1 15 151 11 146 3.27e-32 120
Msa0427730 MtrunA17_Chr8g0387941 26.360 478 304 16 10 468 2 450 5.73e-32 127
Msa0427730 MtrunA17_Chr1g0146351 58.000 100 41 1 37 136 13 111 5.01e-31 115
Msa0427730 MtrunA17_Chr1g0206861 46.875 128 65 2 6 132 2 127 4.15e-30 114
Msa0427730 MtrunA17_Chr1g0198081 27.416 445 272 18 38 466 70 479 2.63e-27 114
Msa0427730 MtrunA17_Chr4g0038711 24.580 476 303 14 16 464 55 501 8.64e-25 107
Msa0427730 MtrunA17_Chr3g0143701 25.107 466 277 18 21 455 74 498 8.87e-25 107
Msa0427730 MtrunA17_Chr5g0436281 25.962 416 261 13 58 465 4 380 1.01e-21 96.7
Msa0427730 MtrunA17_Chr5g0406351 23.831 449 282 16 27 452 107 518 5.32e-21 95.9
Msa0427730 MtrunA17_Chr5g0406331 23.877 423 267 16 28 430 87 474 6.10e-18 86.3
Msa0427730 MtrunA17_Chr3g0112971 25.161 465 292 18 17 465 9 433 2.24e-16 81.3
Msa0427730 MtrunA17_Chr1g0159751 47.561 82 34 2 270 349 1 75 1.10e-15 72.0
Msa0427730 MtrunA17_Chr4g0058161 23.591 479 306 18 1 465 15 447 6.22e-15 76.6
Msa0427730 MtrunA17_Chr2g0281341 22.538 457 303 13 27 464 95 519 1.54e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427730 AT5G09220.1 69.247 465 137 3 11 469 29 493 0.0 689
Msa0427730 AT1G77380.1 69.612 464 136 2 11 469 13 476 0.0 671
Msa0427730 AT5G63850.1 67.982 456 140 3 20 469 11 466 0.0 667
Msa0427730 AT1G44100.1 64.375 480 160 3 1 469 1 480 0.0 652
Msa0427730 AT1G58360.1 55.629 453 195 3 21 467 30 482 0.0 537
Msa0427730 AT1G10010.1 56.541 451 190 3 21 465 21 471 0.0 535
Msa0427730 AT1G10010.2 56.541 451 190 3 21 465 22 472 0.0 535
Msa0427730 AT5G49630.1 56.276 478 196 8 1 465 1 478 0.0 531
Msa0427730 AT5G23810.1 47.732 463 226 7 1 452 1 458 1.20e-142 417
Msa0427730 AT5G23810.2 48.286 350 172 5 1 345 1 346 5.41e-108 325
Msa0427730 AT5G23810.4 47.308 260 130 4 1 257 1 256 9.44e-76 238
Msa0427730 AT5G23810.5 46.698 212 108 3 1 209 1 210 3.95e-59 194
Msa0427730 AT5G23810.3 46.698 212 108 3 1 209 1 210 3.95e-59 194
Msa0427730 AT1G24400.1 28.998 469 286 11 9 466 9 441 9.95e-47 167
Msa0427730 AT1G48640.1 28.178 472 293 9 12 466 11 453 1.84e-46 167
Msa0427730 AT5G40780.1 27.660 470 287 11 14 463 7 443 2.74e-46 167
Msa0427730 AT1G67640.1 29.747 474 292 10 1 466 1 441 8.12e-45 162
Msa0427730 AT5G40780.3 28.235 425 271 9 43 463 1 395 3.26e-42 154
Msa0427730 AT5G40780.2 28.235 425 271 9 43 463 1 395 3.26e-42 154
Msa0427730 AT3G01760.1 26.923 468 300 10 9 461 2 442 3.08e-41 153
Msa0427730 AT1G61270.1 28.507 442 276 9 28 461 34 443 1.17e-39 149
Msa0427730 AT1G71680.1 28.477 453 271 10 28 466 35 448 7.04e-38 144
Msa0427730 AT1G71680.2 30.539 334 193 8 28 347 35 343 1.11e-33 130
Msa0427730 AT1G08230.2 27.938 451 286 12 26 465 26 448 1.23e-31 126
Msa0427730 AT1G25530.1 26.258 457 298 11 13 463 14 437 4.08e-31 125
Msa0427730 AT5G41800.1 25.862 464 284 16 26 468 25 449 2.45e-26 111
Msa0427730 AT2G39890.2 25.061 411 271 11 58 465 63 439 4.34e-21 95.9
Msa0427730 AT2G39890.1 25.061 411 271 11 58 465 63 439 4.34e-21 95.9
Msa0427730 AT2G39890.3 25.061 411 271 11 58 465 4 380 6.22e-21 94.7
Msa0427730 AT1G08230.4 29.582 311 193 7 163 465 37 329 7.05e-21 94.0
Msa0427730 AT1G08230.6 29.582 311 193 7 163 465 37 329 7.05e-21 94.0
Msa0427730 AT1G08230.5 29.582 311 193 7 163 465 37 329 7.05e-21 94.0
Msa0427730 AT1G08230.3 29.582 311 193 7 163 465 56 348 8.42e-21 94.0
Msa0427730 AT2G36590.1 25.000 396 256 13 33 422 30 390 4.11e-20 92.8
Msa0427730 AT3G55740.2 24.519 416 267 12 58 465 4 380 7.07e-20 91.7
Msa0427730 AT3G55740.3 24.519 416 267 12 58 465 4 380 7.07e-20 91.7
Msa0427730 AT3G55740.1 25.000 416 265 13 58 465 60 436 7.63e-20 92.0
Msa0427730 AT4G35180.1 24.429 438 286 11 27 451 57 462 6.38e-15 77.4
Msa0427730 AT1G47670.1 22.976 457 301 13 27 464 93 517 1.03e-11 67.4
Msa0427730 AT5G02170.1 21.749 423 290 10 2 422 105 488 5.71e-11 65.1

Find 109 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCATTTATAACTCCATTT+TGG 0.096747 3_2:+78402366 None:intergenic
TCTTTCACCTATTCCTTTAT+TGG 0.119863 3_2:-78403445 Msa0427730:CDS
TCCTTTCTTCAATGATGTTT+TGG 0.143872 3_2:-78402466 Msa0427730:CDS
CTACAATGACTTGTTCATTT+TGG 0.151530 3_2:+78401883 None:intergenic
TCCTTCAAGGGTAGCCTTAC+AGG 0.203563 3_2:-78403289 Msa0427730:CDS
TCAAATTCTCATTGAAATTC+AGG 0.204663 3_2:-78403179 Msa0427730:intron
ACCTATTCCTTTATTGGCCT+TGG 0.221167 3_2:-78403439 Msa0427730:CDS
GAATTTGAGAAAAGAAAATT+TGG 0.225678 3_2:+78403515 None:intergenic
TAAATTTGAAGATTCTTTCT+TGG 0.240994 3_2:+78402105 None:intergenic
TACTTGGAGCAGTAGGGTTT+TGG 0.256465 3_2:-78402440 Msa0427730:CDS
ACTGGAAAATAGACTGTTAA+AGG 0.269131 3_2:+78402417 None:intergenic
GGAAGCTGTTCACACCATTC+TGG 0.269142 3_2:-78404808 Msa0427730:CDS
TCCCAAAATGGAGTTATAAA+TGG 0.282029 3_2:-78402368 Msa0427730:CDS
GTCATCATCATCATACAAAT+TGG 0.302533 3_2:+78405246 None:intergenic
GAATACCGAATTCCAATTCC+TGG 0.303298 3_2:-78402573 Msa0427730:CDS
ACAACAAAGAAACCTGCTTT+TGG 0.304532 3_2:-78406477 Msa0427730:five_prime_UTR
GCAATATCAATGAGCCAATA+TGG 0.308652 3_2:+78402705 None:intergenic
CACACCTATACTTATCTTTG+TGG 0.330592 3_2:+78402818 None:intergenic
TAAATCTATTCAGATTAATA+TGG 0.331283 3_2:-78402533 Msa0427730:CDS
GTTCAGTACACAAATCTTTA+CGG 0.334346 3_2:-78404325 Msa0427730:CDS
GCTCAGTTGGGTTGGGTGAT+TGG 0.347023 3_2:-78404942 Msa0427730:CDS
TTAGCTGAATGTTATCGAAT+TGG 0.352508 3_2:-78404867 Msa0427730:CDS
TAGGGTTGAAAACCAGGAAT+TGG 0.354439 3_2:+78402561 None:intergenic
CGAATTGGCGATCCTCATTA+CGG 0.356500 3_2:-78404852 Msa0427730:CDS
CTAAATATAACCTGCAACTT+TGG 0.358818 3_2:+78403405 None:intergenic
CTAGCAGTTGCCAAAGTTGC+AGG 0.362617 3_2:-78403415 Msa0427730:intron
TGCTAGACCAAGGCCAATAA+AGG 0.370826 3_2:+78403432 None:intergenic
TGAAGATTCTTTCTTGGAAA+AGG 0.373430 3_2:+78402111 None:intergenic
TCTGAATAGATTTAGATTGT+AGG 0.380758 3_2:+78402542 None:intergenic
GTTTGGTAGGTGCCGTCAAT+TGG 0.382448 3_2:+78405445 None:intergenic
AATCTTTACGGAACTGCAAT+AGG 0.394383 3_2:-78404313 Msa0427730:CDS
CTGAATAGATTTAGATTGTA+GGG 0.395935 3_2:+78402543 None:intergenic
GTATCAGTTGTGGCTGTTGT+TGG 0.403765 3_2:-78402309 Msa0427730:CDS
TTGGGATTACTTGGAGCAGT+AGG 0.409541 3_2:-78402447 Msa0427730:CDS
AAAGAGAAACTATACTTTCA+TGG 0.411359 3_2:-78404829 Msa0427730:CDS
GTAATAATAATCACCTTGTT+TGG 0.412941 3_2:+78405428 None:intergenic
GAAAACCAGGAATTGGAATT+CGG 0.418612 3_2:+78402568 None:intergenic
TCCTGTAAGGCTACCCTTGA+AGG 0.421245 3_2:+78403288 None:intergenic
AATCTATACATGATAGCATT+TGG 0.421990 3_2:-78403544 Msa0427730:CDS
GCAATAGGATACACAATTGC+GGG 0.428317 3_2:-78404298 Msa0427730:CDS
GCTGAGACAGGGCAATAAAA+AGG 0.429469 3_2:-78403618 Msa0427730:intron
CTAGCACTATTGTTATTCAA+TGG 0.436547 3_2:+78402145 None:intergenic
AGAAGGGTTGCGCGTATACT+TGG 0.437084 3_2:+78402646 None:intergenic
GGGCAATAGCTCAGTTGGGT+TGG 0.438417 3_2:-78404950 Msa0427730:CDS
GAAGCTGTTCACACCATTCT+GGG 0.441958 3_2:-78404807 Msa0427730:intron
GACAGAAAATGGTTCCTTCA+AGG 0.449757 3_2:-78403302 Msa0427730:intron
TTTCTCGACGAAAGCAAAGA+AGG 0.450672 3_2:+78402629 None:intergenic
TCTGACTGTTTGCATTCCTC+AGG 0.454495 3_2:-78403595 Msa0427730:CDS
TATCAGTTGTGGCTGTTGTT+GGG 0.456332 3_2:-78402308 Msa0427730:CDS
CACATAATAACAGCAGTTGT+AGG 0.459141 3_2:-78404996 Msa0427730:CDS
GATCACTCACATCATGCTAA+TGG 0.460901 3_2:+78404273 None:intergenic
TGGGGAACTTTCCAAGCTCT+TGG 0.462799 3_2:-78403229 Msa0427730:CDS
TTTCAATAATCAGTTGTGAA+TGG 0.464770 3_2:+78402246 None:intergenic
TGCATGGGTTATGCAGCATT+TGG 0.465101 3_2:-78402768 Msa0427730:CDS
GGTTTCAATGACACCCTTTG+TGG 0.466023 3_2:-78404352 Msa0427730:CDS
ACCAAGGCCAATAAAGGAAT+AGG 0.466847 3_2:+78403438 None:intergenic
TAGTTTCTCTTTCCGTAATG+AGG 0.467007 3_2:+78404840 None:intergenic
GGCAATAGCTCAGTTGGGTT+GGG 0.467438 3_2:-78404949 Msa0427730:CDS
GCATTTGGAGACACAGCACC+AGG 0.467683 3_2:-78402753 Msa0427730:CDS
ATAACAGCAGTTGTAGGATC+AGG 0.483816 3_2:-78404990 Msa0427730:CDS
TTCCAATGCTTACTCCTGTA+AGG 0.491026 3_2:+78403275 None:intergenic
AGCATGGGCAATAGCTCAGT+TGG 0.492596 3_2:-78404955 Msa0427730:CDS
CAAGCCACAAAGATAAGTAT+AGG 0.492781 3_2:-78402822 Msa0427730:CDS
AGGCTATGTTGCCAAGAGCT+TGG 0.496753 3_2:+78403218 None:intergenic
ACAGAAAATGGTTCCTTCAA+GGG 0.502482 3_2:-78403301 Msa0427730:intron
CCCAAAACATCATTGAAGAA+AGG 0.503059 3_2:+78402465 None:intergenic
TAATAATCACCTTGTTTGGT+AGG 0.503353 3_2:+78405432 None:intergenic
GAAAGCAATAAATGTTACAT+TGG 0.503783 3_2:+78402223 None:intergenic
TTATATGCTTTGTGGCTGCA+TGG 0.505265 3_2:-78402784 Msa0427730:CDS
GATGACCGTCTCAAAAGAAC+AGG 0.508021 3_2:-78405229 Msa0427730:intron
AGATTGTAGGGTTGAAAACC+AGG 0.509683 3_2:+78402555 None:intergenic
GTGAAATGCAGTCCAATTGA+CGG 0.513494 3_2:-78405457 Msa0427730:five_prime_UTR
GCTATCGTAATTCACCTTGT+GGG 0.513660 3_2:-78402675 Msa0427730:CDS
CAGGAGTGTTGTCGTTAGCA+TGG 0.516340 3_2:-78404971 Msa0427730:CDS
TAACATTTATTGCTTTCTTG+AGG 0.518101 3_2:-78402217 Msa0427730:three_prime_UTR
TGGGATTACTTGGAGCAGTA+GGG 0.521905 3_2:-78402446 Msa0427730:CDS
CGCTATCGTAATTCACCTTG+TGG 0.523493 3_2:-78402676 Msa0427730:CDS
GACTGTTTGCATTCCTCAGG+AGG 0.526744 3_2:-78403592 Msa0427730:CDS
GCATGGGCAATAGCTCAGTT+GGG 0.527744 3_2:-78404954 Msa0427730:CDS
TGATGAAGCAAGGAGGGGAG+CGG 0.529139 3_2:-78401909 Msa0427730:three_prime_UTR
TGTTTGATATACATCTCCAC+TGG 0.530626 3_2:+78402399 None:intergenic
GTTTCAATGACACCCTTTGT+GGG 0.537172 3_2:-78404351 Msa0427730:CDS
TATATGCTTTGTGGCTGCAT+GGG 0.540477 3_2:-78402783 Msa0427730:CDS
TGTGGCTGTTGTTGGGTCAG+TGG 0.549777 3_2:-78402301 Msa0427730:CDS
TTCTCGACGAAAGCAAAGAA+GGG 0.555174 3_2:+78402630 None:intergenic
TTACTGTGAAATCCAAAAGC+AGG 0.556622 3_2:+78406465 None:intergenic
AGCCTTACAGGAGTAAGCAT+TGG 0.562434 3_2:-78403277 Msa0427730:CDS
GTACTGAACTATCCCACAAA+GGG 0.571823 3_2:+78404339 None:intergenic
GCACCAGGGAACTTACTCAC+TGG 0.573888 3_2:-78402738 Msa0427730:CDS
CTGAAGAAAATCATAACTGA+AGG 0.583795 3_2:+78404918 None:intergenic
AGGAGTGTTGTCGTTAGCAT+GGG 0.586525 3_2:-78404970 Msa0427730:CDS
ATCTATTCAGATTAATATGG+AGG 0.594981 3_2:-78402530 Msa0427730:CDS
TCTAGAATTTGACATGGAGG+TGG 0.597976 3_2:-78405308 Msa0427730:exon
ATGTCTTGTAGTATCAGTTG+TGG 0.607208 3_2:-78402319 Msa0427730:CDS
AAATTGGAGTCTTTGTGTGA+AGG 0.608942 3_2:+78405262 None:intergenic
TTGACGGCACCTACCAAACA+AGG 0.613543 3_2:-78405441 Msa0427730:intron
ATTCCAGTGAGTAAGTTCCC+TGG 0.614262 3_2:+78402735 None:intergenic
TGCAATAGGATACACAATTG+CGG 0.626230 3_2:-78404299 Msa0427730:CDS
GTATAAAGAGTTACCCAGAA+TGG 0.630066 3_2:+78404794 None:intergenic
TTGAGAATATGAATATGCAA+AGG 0.631765 3_2:+78403198 None:intergenic
AACTTGGGTAGTGACTTATG+TGG 0.644765 3_2:-78402183 Msa0427730:three_prime_UTR
ATACTTGGTATGCTCCCACA+AGG 0.667351 3_2:+78402661 None:intergenic
TGTACTGAACTATCCCACAA+AGG 0.675008 3_2:+78404338 None:intergenic
CACAAGGTGAATTACGATAG+CGG 0.685183 3_2:+78402677 None:intergenic
CTTTGGCAACTGCTAGACCA+AGG 0.697595 3_2:+78403422 None:intergenic
ACACAATCTAGAATTTGACA+TGG 0.702429 3_2:-78405314 Msa0427730:exon
CATTTGGAGACACAGCACCA+GGG 0.729488 3_2:-78402752 Msa0427730:CDS
CAATCTAGAATTTGACATGG+AGG 0.734277 3_2:-78405311 Msa0427730:exon
AATCAACATTGCTATCACAG+TGG 0.767055 3_2:+78402488 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTACAAGAAA+TGG - chr3_2:78402344-78402363 Msa0427730:CDS 10.0%
!! CAAAAAATAAATAGTAAAAT+TGG + chr3_2:78402684-78402703 None:intergenic 10.0%
!! TGAATTTAATTAATGTAAAA+TGG + chr3_2:78403237-78403256 None:intergenic 10.0%
!!! TAAATAGTAAAATTTTGAAA+TGG - chr3_2:78403962-78403981 Msa0427730:intron 10.0%
!!! AAATCAATATCAATTTTTTT+GGG + chr3_2:78404226-78404245 None:intergenic 10.0%
!!! AAAATCAATATCAATTTTTT+TGG + chr3_2:78404227-78404246 None:intergenic 10.0%
!!! AAGATAATTTTATTCTTAAT+TGG + chr3_2:78404279-78404298 None:intergenic 10.0%
!!! ATTTTATTCAATTTATCTTT+TGG - chr3_2:78404377-78404396 Msa0427730:intron 10.0%
!! TAAAAATAAATTTGTAACAA+TGG + chr3_2:78404559-78404578 None:intergenic 10.0%
!!! ATTGTTACAAATTTATTTTT+AGG - chr3_2:78404558-78404577 Msa0427730:intron 10.0%
!!! AATCATCATTCATTTTTATT+AGG - chr3_2:78402042-78402061 Msa0427730:intron 15.0%
!! GATATTATAATCAACAATAA+GGG + chr3_2:78402084-78402103 None:intergenic 15.0%
!! AGATATTATAATCAACAATA+AGG + chr3_2:78402085-78402104 None:intergenic 15.0%
!!! ATTGTTTTTTTTAACAAGAA+TGG - chr3_2:78402373-78402392 Msa0427730:CDS 15.0%
!!! ATTTTTTTTTTAAGGAAGAA+TGG - chr3_2:78402400-78402419 Msa0427730:CDS 15.0%
!! TCAATAATTCTTTCAAAAAA+TGG + chr3_2:78402514-78402533 None:intergenic 15.0%
!! AAATAAATAGTAAAATTGGA+CGG + chr3_2:78402680-78402699 None:intergenic 15.0%
!! ATTTGTAACCAAAATAATAA+TGG + chr3_2:78402737-78402756 None:intergenic 15.0%
!!! CAATATTCACAATTTTTTTT+TGG + chr3_2:78402813-78402832 None:intergenic 15.0%
!! TAAATCTATTCAGATTAATA+TGG - chr3_2:78405857-78405876 Msa0427730:intron 15.0%
!! CAAAAAATTAAATCAAACAA+CGG + chr3_2:78406463-78406482 None:intergenic 15.0%
!! TTCATTCTTCTCAAATTTAT+TGG - chr3_2:78402011-78402030 Msa0427730:intron 20.0%
!!! TGATTTTGGGTTTTTTTTAT+TGG - chr3_2:78402223-78402242 Msa0427730:three_prime_UTR 20.0%
!!! ATGGCAGAATTTTTTTTTTA+AGG - chr3_2:78402392-78402411 Msa0427730:CDS 20.0%
!!! ACTATTTATTTTTTGTGCAA+AGG - chr3_2:78402689-78402708 Msa0427730:CDS 20.0%
!!! AAATAATAATGGAGTCAAAT+TGG + chr3_2:78402726-78402745 None:intergenic 20.0%
!!! ATTTGACTCCATTATTATTT+TGG - chr3_2:78402726-78402745 Msa0427730:CDS 20.0%
!!! ATTATATGTATGATGATGAT+AGG - chr3_2:78403268-78403287 Msa0427730:CDS 20.0%
!! ATATGATAAAAAGTGACAAA+AGG - chr3_2:78403333-78403352 Msa0427730:intron 20.0%
!!! ACTATTTTTGATATTCTGTT+TGG - chr3_2:78403745-78403764 Msa0427730:intron 20.0%
!! TTTAATAATCACTACTAGAA+AGG - chr3_2:78403832-78403851 Msa0427730:intron 20.0%
!! ACATATATAGAAATCAGATT+TGG - chr3_2:78404350-78404369 Msa0427730:CDS 20.0%
!! TTTGACAAAATTTGTAACAA+TGG + chr3_2:78404532-78404551 None:intergenic 20.0%
!!! CAAGAATATTTAGTTTGATA+TGG - chr3_2:78404717-78404736 Msa0427730:intron 20.0%
!!! TGTTTTAATTAAACTGGTTT+TGG - chr3_2:78404750-78404769 Msa0427730:intron 20.0%
!! GAATTTGAGAAAAGAAAATT+TGG + chr3_2:78404878-78404897 None:intergenic 20.0%
!!! ACCATATTAAGTTTTTATAC+CGG - chr3_2:78405366-78405385 Msa0427730:intron 20.0%
!! TCTGAAAAAAGTTTATAAAC+CGG + chr3_2:78405416-78405435 None:intergenic 20.0%
!! AGAAAATTGTGATAAAAAGA+TGG - chr3_2:78405779-78405798 Msa0427730:intron 20.0%
!! TAAATTTGAAGATTCTTTCT+TGG + chr3_2:78406288-78406307 None:intergenic 20.0%
!!! TTTAATTTTTTGATGAAGCA+AGG - chr3_2:78406471-78406490 Msa0427730:five_prime_UTR 20.0%
!!! CATCATTCATTTTTATTAGG+TGG - chr3_2:78402045-78402064 Msa0427730:intron 25.0%
!!! TGTTTTAATTATACTCTGTC+TGG - chr3_2:78402580-78402599 Msa0427730:CDS 25.0%
!!! AAAAACCTCTTTTGTTTCTT+TGG - chr3_2:78402869-78402888 Msa0427730:intron 25.0%
! GTAATAATAATCACCTTGTT+TGG + chr3_2:78402965-78402984 None:intergenic 25.0%
! AGACAAAATAATTGAGAGAA+GGG + chr3_2:78402995-78403014 None:intergenic 25.0%
! AAAGAGAAACTATACTTTCA+TGG - chr3_2:78403561-78403580 Msa0427730:CDS 25.0%
! AAAATCGAACCAAATCAAAT+TGG - chr3_2:78403658-78403677 Msa0427730:intron 25.0%
! TTATGAAGCAATAGTGTTTA+TGG - chr3_2:78403690-78403709 Msa0427730:intron 25.0%
!! ATATAGAAATCAGATTTGGT+TGG - chr3_2:78404354-78404373 Msa0427730:CDS 25.0%
! AAAATTTGTAACAATGGATG+TGG + chr3_2:78404526-78404545 None:intergenic 25.0%
! TATTCTTGTCAACAGAAATA+AGG + chr3_2:78404705-78404724 None:intergenic 25.0%
!!! TGAGTGTGTTTTAATTAAAC+TGG - chr3_2:78404744-78404763 Msa0427730:intron 25.0%
! AATCTATACATGATAGCATT+TGG - chr3_2:78404846-78404865 Msa0427730:CDS 25.0%
!!! TTCCAGATTTTGATAAAATG+TGG - chr3_2:78404895-78404914 Msa0427730:CDS 25.0%
! TTGAGAATATGAATATGCAA+AGG + chr3_2:78405195-78405214 None:intergenic 25.0%
! TCAAATTCTCATTGAAATTC+AGG - chr3_2:78405211-78405230 Msa0427730:intron 25.0%
!! CCATATTAAGTTTTTATACC+GGG - chr3_2:78405367-78405386 Msa0427730:intron 25.0%
! ATGCATTCTTCTTATAAAAC+CGG - chr3_2:78405394-78405413 Msa0427730:intron 25.0%
!!! TATAAACTTTTTTCAGAACG+TGG - chr3_2:78405419-78405438 Msa0427730:intron 25.0%
!!! ATAAACTTTTTTCAGAACGT+GGG - chr3_2:78405420-78405439 Msa0427730:intron 25.0%
! TATGATAAATTTAACTCCAC+AGG - chr3_2:78405504-78405523 Msa0427730:intron 25.0%
!!! TTCATTGTTTTTACTTCAGA+TGG + chr3_2:78405547-78405566 None:intergenic 25.0%
!! CTGGAATTTTTAATCCATAT+TGG - chr3_2:78405671-78405690 Msa0427730:intron 25.0%
!!! CGGTATTCTTTGTTTATTTT+AGG + chr3_2:78405805-78405824 None:intergenic 25.0%
! CTGAATAGATTTAGATTGTA+GGG + chr3_2:78405850-78405869 None:intergenic 25.0%
! TCTGAATAGATTTAGATTGT+AGG + chr3_2:78405851-78405870 None:intergenic 25.0%
! ATCTATTCAGATTAATATGG+AGG - chr3_2:78405860-78405879 Msa0427730:intron 25.0%
! AACAAAAAAAGATCCCAAAA+TGG - chr3_2:78406010-78406029 Msa0427730:intron 25.0%
!! TCCATTTATAACTCCATTTT+GGG + chr3_2:78406026-78406045 None:intergenic 25.0%
!! ATCCATTTATAACTCCATTT+TGG + chr3_2:78406027-78406046 None:intergenic 25.0%
! TTTCAATAATCAGTTGTGAA+TGG + chr3_2:78406147-78406166 None:intergenic 25.0%
! GAAAGCAATAAATGTTACAT+TGG + chr3_2:78406170-78406189 None:intergenic 25.0%
! TAACATTTATTGCTTTCTTG+AGG - chr3_2:78406173-78406192 Msa0427730:intron 25.0%
TAGACACATAGAAAAAGAAG+TGG - chr3_2:78402248-78402267 Msa0427730:CDS 30.0%
! CATTAGTATGGGGTAATTTT+AGG + chr3_2:78402628-78402647 None:intergenic 30.0%
CTAAAATTACCCCATACTAA+TGG - chr3_2:78402626-78402645 Msa0427730:CDS 30.0%
!!! TATACTTTTTCGGTACGAAT+TGG + chr3_2:78402657-78402676 None:intergenic 30.0%
!! AATTGGACGGTATACTTTTT+CGG + chr3_2:78402667-78402686 None:intergenic 30.0%
! AATAATGGAGTCAAATTGGA+TGG + chr3_2:78402722-78402741 None:intergenic 30.0%
! TAATAATCACCTTGTTTGGT+AGG + chr3_2:78402961-78402980 None:intergenic 30.0%
TAATTGAGAGAAGGGTTATT+TGG + chr3_2:78402987-78403006 None:intergenic 30.0%
GAGACAAAATAATTGAGAGA+AGG + chr3_2:78402996-78403015 None:intergenic 30.0%
! GATTGTGTTCTAAATCTTTC+CGG + chr3_2:78403064-78403083 None:intergenic 30.0%
! ACACAATCTAGAATTTGACA+TGG - chr3_2:78403076-78403095 Msa0427730:intron 30.0%
GTCATCATCATCATACAAAT+TGG + chr3_2:78403147-78403166 None:intergenic 30.0%
CTGAAGAAAATCATAACTGA+AGG + chr3_2:78403475-78403494 None:intergenic 30.0%
TTAGCTGAATGTTATCGAAT+TGG - chr3_2:78403523-78403542 Msa0427730:CDS 30.0%
TTCAACAGTCCAATTTGATT+TGG + chr3_2:78403670-78403689 None:intergenic 30.0%
!!! GTTTGCTGTTTCTTTTGAAA+AGG - chr3_2:78403804-78403823 Msa0427730:intron 30.0%
!!! TGACTTTGTTTTTGACTTCT+TGG + chr3_2:78403872-78403891 None:intergenic 30.0%
! GAGAATCAAATGATTTTTGC+AGG - chr3_2:78404014-78404033 Msa0427730:intron 30.0%
! AATCAAATGATTTTTGCAGG+AGG - chr3_2:78404017-78404036 Msa0427730:intron 30.0%
GTTCAGTACACAAATCTTTA+CGG - chr3_2:78404065-78404084 Msa0427730:intron 30.0%
!! TTTGCTGTTAATCATAACTG+AGG - chr3_2:78404481-78404500 Msa0427730:intron 30.0%
! TTGCTGTTAATCATAACTGA+GGG - chr3_2:78404482-78404501 Msa0427730:intron 30.0%
! TACTGGTGTTAGATATGTTA+TGG + chr3_2:78404677-78404696 None:intergenic 30.0%
ACAGAAATAAGGTCAATTAC+TGG + chr3_2:78404694-78404713 None:intergenic 30.0%
! CACCACATTTTATCAAAATC+TGG + chr3_2:78404900-78404919 None:intergenic 30.0%
!! CAGATTTTGATAAAATGTGG+TGG - chr3_2:78404898-78404917 Msa0427730:CDS 30.0%
TCTTTCACCTATTCCTTTAT+TGG - chr3_2:78404945-78404964 Msa0427730:CDS 30.0%
CTAAATATAACCTGCAACTT+TGG + chr3_2:78404988-78405007 None:intergenic 30.0%
ATAACATTCCATTTCTCAGA+AGG - chr3_2:78405027-78405046 Msa0427730:intron 30.0%
AATTGTTCTACGACAGAAAA+TGG - chr3_2:78405077-78405096 Msa0427730:intron 30.0%
!! GTTTTGAACATAGAGAGAAA+AGG + chr3_2:78405241-78405260 None:intergenic 30.0%
ATTGGAAAAAACCTAAGACA+TGG + chr3_2:78405271-78405290 None:intergenic 30.0%
CACCAAATTCAATAGTGTTT+GGG + chr3_2:78405305-78405324 None:intergenic 30.0%
CCCGGTATAAAAACTTAATA+TGG + chr3_2:78405370-78405389 None:intergenic 30.0%
!!! TTCAGATGGTGGATTTTTTA+TGG + chr3_2:78405533-78405552 None:intergenic 30.0%
!!! ATTGTTTTTACTTCAGATGG+TGG + chr3_2:78405544-78405563 None:intergenic 30.0%
! ACTGCATTTTATATGCTTTG+TGG - chr3_2:78405598-78405617 Msa0427730:intron 30.0%
! TCCTTTCTTCAATGATGTTT+TGG - chr3_2:78405924-78405943 Msa0427730:intron 30.0%
! CCTTTCTTCAATGATGTTTT+GGG - chr3_2:78405925-78405944 Msa0427730:intron 30.0%
!!! AATGATGTTTTGGGATTACT+TGG - chr3_2:78405934-78405953 Msa0427730:intron 30.0%
ACTGGAAAATAGACTGTTAA+AGG + chr3_2:78405976-78405995 None:intergenic 30.0%
! TTTAACAGTCTATTTTCCAG+TGG - chr3_2:78405975-78405994 Msa0427730:intron 30.0%
TCCCAAAATGGAGTTATAAA+TGG - chr3_2:78406022-78406041 Msa0427730:intron 30.0%
! CTAGCACTATTGTTATTCAA+TGG + chr3_2:78406248-78406267 None:intergenic 30.0%
TGAAGATTCTTTCTTGGAAA+AGG + chr3_2:78406282-78406301 None:intergenic 30.0%
TATATTTCTCCGTTATTGTG+AGG - chr3_2:78406322-78406341 Msa0427730:intron 30.0%
! CAATTTGTTCCTCACAATAA+CGG + chr3_2:78406334-78406353 None:intergenic 30.0%
TATTGTGAGGAACAAATTGA+AGG - chr3_2:78406335-78406354 Msa0427730:intron 30.0%
!!! AATTTTTTGATGAAGCAAGG+AGG - chr3_2:78406474-78406493 Msa0427730:five_prime_UTR 30.0%
!!! ATTTTTTGATGAAGCAAGGA+GGG - chr3_2:78406475-78406494 Msa0427730:five_prime_UTR 30.0%
! ACAACAAAGAAACCTGCTTT+TGG - chr3_2:78401913-78401932 Msa0427730:three_prime_UTR 35.0%
TTACTGTGAAATCCAAAAGC+AGG + chr3_2:78401928-78401947 None:intergenic 35.0%
!!! AAGAGTGAAGACACTGATTT+TGG - chr3_2:78402209-78402228 Msa0427730:three_prime_UTR 35.0%
!!! AGAGTGAAGACACTGATTTT+GGG - chr3_2:78402210-78402229 Msa0427730:three_prime_UTR 35.0%
TTCAAATCAAACACTTCCTC+CGG - chr3_2:78403042-78403061 Msa0427730:intron 35.0%
! CAATCTAGAATTTGACATGG+AGG - chr3_2:78403079-78403098 Msa0427730:intron 35.0%
AAATTGGAGTCTTTGTGTGA+AGG + chr3_2:78403131-78403150 None:intergenic 35.0%
!! TAGTACCTGTTCTTTTGAGA+CGG + chr3_2:78403169-78403188 None:intergenic 35.0%
!!! CAAAAGGTACTTTTTGAGAC+AGG - chr3_2:78403349-78403368 Msa0427730:intron 35.0%
CACATAATAACAGCAGTTGT+AGG - chr3_2:78403394-78403413 Msa0427730:intron 35.0%
! TTTTCTTCAGTCTCATCACT+TGG - chr3_2:78403485-78403504 Msa0427730:CDS 35.0%
TAGTTTCTCTTTCCGTAATG+AGG + chr3_2:78403553-78403572 None:intergenic 35.0%
GTATAAAGAGTTACCCAGAA+TGG + chr3_2:78403599-78403618 None:intergenic 35.0%
AATCTTTACGGAACTGCAAT+AGG - chr3_2:78404077-78404096 Msa0427730:intron 35.0%
TGCAATAGGATACACAATTG+CGG - chr3_2:78404091-78404110 Msa0427730:intron 35.0%
TAAAACTGATATCGTGCTTG+AGG + chr3_2:78404331-78404350 None:intergenic 35.0%
ACAATGGATGTGGTACATAT+AGG + chr3_2:78404516-78404535 None:intergenic 35.0%
!!! TGCTTTTTCCTTCTGAGAAA+TGG + chr3_2:78405038-78405057 None:intergenic 35.0%
ACAGAAAATGGTTCCTTCAA+GGG - chr3_2:78405089-78405108 Msa0427730:intron 35.0%
TGACAAAAGCCCAAAAAGTA+TGG - chr3_2:78405141-78405160 Msa0427730:intron 35.0%
! GACAAAAGCCCAAAAAGTAT+GGG - chr3_2:78405142-78405161 Msa0427730:intron 35.0%
! ACAAAAGCCCAAAAAGTATG+GGG - chr3_2:78405143-78405162 Msa0427730:intron 35.0%
!! GAAAGTTCCCCATACTTTTT+GGG + chr3_2:78405153-78405172 None:intergenic 35.0%
AAACTAGTGTACCATGTCTT+AGG - chr3_2:78405257-78405276 Msa0427730:CDS 35.0%
AATAGTGTTTGGGCTTAAGT+GGG + chr3_2:78405295-78405314 None:intergenic 35.0%
AGCCCAAACACTATTGAATT+TGG - chr3_2:78405300-78405319 Msa0427730:exon 35.0%
GCACCAAATTCAATAGTGTT+TGG + chr3_2:78405306-78405325 None:intergenic 35.0%
TGGTGCGTAGATATAAATTG+TGG - chr3_2:78405320-78405339 Msa0427730:five_prime_UTR 35.0%
GGTGCGTAGATATAAATTGT+GGG - chr3_2:78405321-78405340 Msa0427730:five_prime_UTR 35.0%
TAAGAAGAATGCATAAGACC+CGG + chr3_2:78405388-78405407 None:intergenic 35.0%
CAAGCCACAAAGATAAGTAT+AGG - chr3_2:78405568-78405587 Msa0427730:intron 35.0%
CACACCTATACTTATCTTTG+TGG + chr3_2:78405575-78405594 None:intergenic 35.0%
GCAATATCAATGAGCCAATA+TGG + chr3_2:78405688-78405707 None:intergenic 35.0%
GAAAACCAGGAATTGGAATT+CGG + chr3_2:78405825-78405844 None:intergenic 35.0%
AATCAACATTGCTATCACAG+TGG + chr3_2:78405905-78405924 None:intergenic 35.0%
CCCAAAACATCATTGAAGAA+AGG + chr3_2:78405928-78405947 None:intergenic 35.0%
TGTTTGATATACATCTCCAC+TGG + chr3_2:78405994-78406013 None:intergenic 35.0%
ATGTCTTGTAGTATCAGTTG+TGG - chr3_2:78406071-78406090 Msa0427730:intron 35.0%
TGAGGATGTAAAAAGCAACT+TGG - chr3_2:78406191-78406210 Msa0427730:intron 35.0%
GAGGATGTAAAAAGCAACTT+GGG - chr3_2:78406192-78406211 Msa0427730:intron 35.0%
AATTGAAGGTCTTGCTTTCT+TGG - chr3_2:78406349-78406368 Msa0427730:intron 35.0%
ATTGAAGGTCTTGCTTTCTT+GGG - chr3_2:78406350-78406369 Msa0427730:intron 35.0%
!!! TTTTTTGATGAAGCAAGGAG+GGG - chr3_2:78406476-78406495 Msa0427730:five_prime_UTR 35.0%
ATTGGACGGTCCATTAGTAT+GGG + chr3_2:78402639-78402658 None:intergenic 40.0%
AATTGGACGGTCCATTAGTA+TGG + chr3_2:78402640-78402659 None:intergenic 40.0%
!!! CTTTTTCGGTACGAATTGGA+CGG + chr3_2:78402653-78402672 None:intergenic 40.0%
CAGCACCAAAGAAACAAAAG+AGG + chr3_2:78402877-78402896 None:intergenic 40.0%
GTGAAATGCAGTCCAATTGA+CGG - chr3_2:78402933-78402952 Msa0427730:intron 40.0%
! TGTGTTCTAAATCTTTCCGG+AGG + chr3_2:78403061-78403080 None:intergenic 40.0%
! TCTAGAATTTGACATGGAGG+TGG - chr3_2:78403082-78403101 Msa0427730:intron 40.0%
!!! GGTACTTTTTGAGACAGGAA+CGG - chr3_2:78403354-78403373 Msa0427730:intron 40.0%
!!! TTTTTGAGACAGGAACGGTT+TGG - chr3_2:78403359-78403378 Msa0427730:intron 40.0%
ATAACAGCAGTTGTAGGATC+AGG - chr3_2:78403400-78403419 Msa0427730:intron 40.0%
TCACACGCTTGTACTTGATT+TGG - chr3_2:78403889-78403908 Msa0427730:intron 40.0%
GTTTCAATGACACCCTTTGT+GGG - chr3_2:78404039-78404058 Msa0427730:intron 40.0%
GTACTGAACTATCCCACAAA+GGG + chr3_2:78404054-78404073 None:intergenic 40.0%
TGTACTGAACTATCCCACAA+AGG + chr3_2:78404055-78404074 None:intergenic 40.0%
GCAATAGGATACACAATTGC+GGG - chr3_2:78404092-78404111 Msa0427730:intron 40.0%
GATCACTCACATCATGCTAA+TGG + chr3_2:78404120-78404139 None:intergenic 40.0%
! ACCTATTCCTTTATTGGCCT+TGG - chr3_2:78404951-78404970 Msa0427730:CDS 40.0%
ACCAAGGCCAATAAAGGAAT+AGG + chr3_2:78404955-78404974 None:intergenic 40.0%
GACAGAAAATGGTTCCTTCA+AGG - chr3_2:78405088-78405107 Msa0427730:intron 40.0%
TTCCAATGCTTACTCCTGTA+AGG + chr3_2:78405118-78405137 None:intergenic 40.0%
! GGAAAGTTCCCCATACTTTT+TGG + chr3_2:78405154-78405173 None:intergenic 40.0%
CAATAGTGTTTGGGCTTAAG+TGG + chr3_2:78405296-78405315 None:intergenic 40.0%
!!! GGATTTTTTATGGTGTCCTG+TGG + chr3_2:78405523-78405542 None:intergenic 40.0%
TTATATGCTTTGTGGCTGCA+TGG - chr3_2:78405606-78405625 Msa0427730:intron 40.0%
TATATGCTTTGTGGCTGCAT+GGG - chr3_2:78405607-78405626 Msa0427730:intron 40.0%
CACAAGGTGAATTACGATAG+CGG + chr3_2:78405716-78405735 None:intergenic 40.0%
GCTATCGTAATTCACCTTGT+GGG - chr3_2:78405715-78405734 Msa0427730:intron 40.0%
TTCTCGACGAAAGCAAAGAA+GGG + chr3_2:78405763-78405782 None:intergenic 40.0%
TTTCTCGACGAAAGCAAAGA+AGG + chr3_2:78405764-78405783 None:intergenic 40.0%
GAATACCGAATTCCAATTCC+TGG - chr3_2:78405817-78405836 Msa0427730:intron 40.0%
TAGGGTTGAAAACCAGGAAT+TGG + chr3_2:78405832-78405851 None:intergenic 40.0%
AGATTGTAGGGTTGAAAACC+AGG + chr3_2:78405838-78405857 None:intergenic 40.0%
TATCAGTTGTGGCTGTTGTT+GGG - chr3_2:78406082-78406101 Msa0427730:intron 40.0%
AACTTGGGTAGTGACTTATG+TGG - chr3_2:78406207-78406226 Msa0427730:intron 40.0%
TTGGACGGTCCATTAGTATG+GGG + chr3_2:78402638-78402657 None:intergenic 45.0%
GATGACCGTCTCAAAAGAAC+AGG - chr3_2:78403161-78403180 Msa0427730:intron 45.0%
!! AGGAGTGTTGTCGTTAGCAT+GGG - chr3_2:78403420-78403439 Msa0427730:CDS 45.0%
CGAATTGGCGATCCTCATTA+CGG - chr3_2:78403538-78403557 Msa0427730:CDS 45.0%
GAAGCTGTTCACACCATTCT+GGG - chr3_2:78403583-78403602 Msa0427730:CDS 45.0%
GGTTTCAATGACACCCTTTG+TGG - chr3_2:78404038-78404057 Msa0427730:intron 45.0%
!!! AAACTGGTTTTGGCTGAGAC+AGG - chr3_2:78404760-78404779 Msa0427730:intron 45.0%
!!! AACTGGTTTTGGCTGAGACA+GGG - chr3_2:78404761-78404780 Msa0427730:intron 45.0%
GCTGAGACAGGGCAATAAAA+AGG - chr3_2:78404772-78404791 Msa0427730:intron 45.0%
TCTGACTGTTTGCATTCCTC+AGG - chr3_2:78404795-78404814 Msa0427730:intron 45.0%
! ACATGAGTCTTTTCCTCCTG+AGG + chr3_2:78404814-78404833 None:intergenic 45.0%
TGCTAGACCAAGGCCAATAA+AGG + chr3_2:78404961-78404980 None:intergenic 45.0%
AGCCTTACAGGAGTAAGCAT+TGG - chr3_2:78405113-78405132 Msa0427730:intron 45.0%
GTTTGGGCTTAAGTGGGTAT+TGG + chr3_2:78405289-78405308 None:intergenic 45.0%
! TGCATGGGTTATGCAGCATT+TGG - chr3_2:78405622-78405641 Msa0427730:intron 45.0%
ATTCCAGTGAGTAAGTTCCC+TGG + chr3_2:78405658-78405677 None:intergenic 45.0%
CGCTATCGTAATTCACCTTG+TGG - chr3_2:78405714-78405733 Msa0427730:intron 45.0%
ATACTTGGTATGCTCCCACA+AGG + chr3_2:78405732-78405751 None:intergenic 45.0%
TTGGGATTACTTGGAGCAGT+AGG - chr3_2:78405943-78405962 Msa0427730:intron 45.0%
TGGGATTACTTGGAGCAGTA+GGG - chr3_2:78405944-78405963 Msa0427730:intron 45.0%
! TACTTGGAGCAGTAGGGTTT+TGG - chr3_2:78405950-78405969 Msa0427730:intron 45.0%
GTATCAGTTGTGGCTGTTGT+TGG - chr3_2:78406081-78406100 Msa0427730:intron 45.0%
!! AATAATATTATAATAAGAAT+TGG + chr3_2:78402764-78402783 None:intergenic 5.0%
!!! TTATTTATTGATTTAATAAA+GGG + chr3_2:78404597-78404616 None:intergenic 5.0%
!!! TTTATTTATTGATTTAATAA+AGG + chr3_2:78404598-78404617 None:intergenic 5.0%
! GTTTGGTAGGTGCCGTCAAT+TGG + chr3_2:78402948-78402967 None:intergenic 50.0%
TTGACGGCACCTACCAAACA+AGG - chr3_2:78402949-78402968 Msa0427730:intron 50.0%
!! CAGGAGTGTTGTCGTTAGCA+TGG - chr3_2:78403419-78403438 Msa0427730:CDS 50.0%
AGCATGGGCAATAGCTCAGT+TGG - chr3_2:78403435-78403454 Msa0427730:CDS 50.0%
GCATGGGCAATAGCTCAGTT+GGG - chr3_2:78403436-78403455 Msa0427730:CDS 50.0%
GGCAATAGCTCAGTTGGGTT+GGG - chr3_2:78403441-78403460 Msa0427730:CDS 50.0%
GGAAGCTGTTCACACCATTC+TGG - chr3_2:78403582-78403601 Msa0427730:CDS 50.0%
GACTGTTTGCATTCCTCAGG+AGG - chr3_2:78404798-78404817 Msa0427730:intron 50.0%
CTTTGGCAACTGCTAGACCA+AGG + chr3_2:78404971-78404990 None:intergenic 50.0%
CTAGCAGTTGCCAAAGTTGC+AGG - chr3_2:78404975-78404994 Msa0427730:CDS 50.0%
! TCCTTCAAGGGTAGCCTTAC+AGG - chr3_2:78405101-78405120 Msa0427730:intron 50.0%
TCCTGTAAGGCTACCCTTGA+AGG + chr3_2:78405105-78405124 None:intergenic 50.0%
TGGGGAACTTTCCAAGCTCT+TGG - chr3_2:78405161-78405180 Msa0427730:intron 50.0%
AGGCTATGTTGCCAAGAGCT+TGG + chr3_2:78405175-78405194 None:intergenic 50.0%
CATTTGGAGACACAGCACCA+GGG - chr3_2:78405638-78405657 Msa0427730:intron 50.0%
AGAAGGGTTGCGCGTATACT+TGG + chr3_2:78405747-78405766 None:intergenic 50.0%
GAAGGTCTTGCTTTCTTGGG+AGG - chr3_2:78406353-78406372 Msa0427730:intron 50.0%
CTTGCTTTCTTGGGAGGAAG+TGG - chr3_2:78406359-78406378 Msa0427730:intron 50.0%
GAGGAAGTGGATGTGAGCAT+AGG - chr3_2:78406372-78406391 Msa0427730:intron 50.0%
GGGCAATAGCTCAGTTGGGT+TGG - chr3_2:78403440-78403459 Msa0427730:CDS 55.0%
!! GCTCAGTTGGGTTGGGTGAT+TGG - chr3_2:78403448-78403467 Msa0427730:CDS 55.0%
GCATTTGGAGACACAGCACC+AGG - chr3_2:78405637-78405656 Msa0427730:intron 55.0%
GCACCAGGGAACTTACTCAC+TGG - chr3_2:78405652-78405671 Msa0427730:intron 55.0%
TGTGGCTGTTGTTGGGTCAG+TGG - chr3_2:78406089-78406108 Msa0427730:intron 55.0%
TGATGAAGCAAGGAGGGGAG+CGG - chr3_2:78406481-78406500 Msa0427730:five_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 78401895 78406517 78401895 ID=Msa0427730;Name=Msa0427730
chr3_2 mRNA 78401895 78406517 78401895 ID=Msa0427730-mRNA-1;Parent=Msa0427730;Name=Msa0427730-mRNA-1;_AED=0.32;_eAED=0.32;_QI=139|1|1|1|0.62|0.44|9|230|469
chr3_2 exon 78401895 78401984 78401895 ID=Msa0427730-mRNA-1:exon:20797;Parent=Msa0427730-mRNA-1
chr3_2 exon 78402108 78402886 78402108 ID=Msa0427730-mRNA-1:exon:20796;Parent=Msa0427730-mRNA-1
chr3_2 exon 78403180 78403319 78403180 ID=Msa0427730-mRNA-1:exon:20795;Parent=Msa0427730-mRNA-1
chr3_2 exon 78403416 78403630 78403416 ID=Msa0427730-mRNA-1:exon:20794;Parent=Msa0427730-mRNA-1
chr3_2 exon 78404283 78404376 78404283 ID=Msa0427730-mRNA-1:exon:20793;Parent=Msa0427730-mRNA-1
chr3_2 exon 78404808 78405041 78404808 ID=Msa0427730-mRNA-1:exon:20792;Parent=Msa0427730-mRNA-1
chr3_2 exon 78405230 78405345 78405230 ID=Msa0427730-mRNA-1:exon:20791;Parent=Msa0427730-mRNA-1
chr3_2 exon 78405442 78405503 78405442 ID=Msa0427730-mRNA-1:exon:20790;Parent=Msa0427730-mRNA-1
chr3_2 exon 78406469 78406517 78406469 ID=Msa0427730-mRNA-1:exon:20789;Parent=Msa0427730-mRNA-1
chr3_2 five_prime_UTR 78406469 78406517 78406469 ID=Msa0427730-mRNA-1:five_prime_utr;Parent=Msa0427730-mRNA-1
chr3_2 five_prime_UTR 78405442 78405503 78405442 ID=Msa0427730-mRNA-1:five_prime_utr;Parent=Msa0427730-mRNA-1
chr3_2 five_prime_UTR 78405318 78405345 78405318 ID=Msa0427730-mRNA-1:five_prime_utr;Parent=Msa0427730-mRNA-1
chr3_2 CDS 78405230 78405317 78405230 ID=Msa0427730-mRNA-1:cds;Parent=Msa0427730-mRNA-1
chr3_2 CDS 78404808 78405041 78404808 ID=Msa0427730-mRNA-1:cds;Parent=Msa0427730-mRNA-1
chr3_2 CDS 78404283 78404376 78404283 ID=Msa0427730-mRNA-1:cds;Parent=Msa0427730-mRNA-1
chr3_2 CDS 78403416 78403630 78403416 ID=Msa0427730-mRNA-1:cds;Parent=Msa0427730-mRNA-1
chr3_2 CDS 78403180 78403319 78403180 ID=Msa0427730-mRNA-1:cds;Parent=Msa0427730-mRNA-1
chr3_2 CDS 78402248 78402886 78402248 ID=Msa0427730-mRNA-1:cds;Parent=Msa0427730-mRNA-1
chr3_2 three_prime_UTR 78402108 78402247 78402108 ID=Msa0427730-mRNA-1:three_prime_utr;Parent=Msa0427730-mRNA-1
chr3_2 three_prime_UTR 78401895 78401984 78401895 ID=Msa0427730-mRNA-1:three_prime_utr;Parent=Msa0427730-mRNA-1
Gene Sequence

>Msa0427730

ATGGAGGTGGAACACTCTATAGAAGCTGCTGTTCCTTCACACAAAGACTCCAATTTGTATGATGATGATGACCGTCTCAAAAGAACAGGAACGGTTTGGACAACAAGTTCGCACATAATAACAGCAGTTGTAGGATCAGGAGTGTTGTCGTTAGCATGGGCAATAGCTCAGTTGGGTTGGGTGATTGGTCCTTCAGTTATGATTTTCTTCAGTCTCATCACTTGGTATACTTCATCACTTTTAGCTGAATGTTATCGAATTGGCGATCCTCATTACGGAAAGAGAAACTATACTTTCATGGAAGCTGTTCACACCATTCTGGGAGGTTTCAATGACACCCTTTGTGGGATAGTTCAGTACACAAATCTTTACGGAACTGCAATAGGATACACAATTGCGGGTGCCATTAGCATGATGGCAATAAAAAGGTCTGACTGTTTGCATTCCTCAGGAGGAAAAGACTCATGTCACATTTCAAGCAATCTATACATGATAGCATTTGGAGTAATCCAAATTTTCTTTTCTCAAATTCCAGATTTTGATAAAATGTGGTGGCTCTCAATAGTTGCAGCAATCATGTCTTTCACCTATTCCTTTATTGGCCTTGGTCTAGCAGTTGCCAAAGTTGCAGAAAATGGTTCCTTCAAGGGTAGCCTTACAGGAGTAAGCATTGGAACTGTGACAAAAGCCCAAAAAGTATGGGGAACTTTCCAAGCTCTTGGCAACATAGCCTTTGCATATTCATATTCTCAAATTCTCATTGAAATTCAGGACACCATAAAAAATCCACCATCTGAAGTAAAAACAATGAAGCAAGCCACAAAGATAAGTATAGGTGTGACAACTGCATTTTATATGCTTTGTGGCTGCATGGGTTATGCAGCATTTGGAGACACAGCACCAGGGAACTTACTCACTGGAATTTTTAATCCATATTGGCTCATTGATATTGCTAATGCCGCTATCGTAATTCACCTTGTGGGAGCATACCAAGTATACGCGCAACCCTTCTTTGCTTTCGTCGAGAAAATTGTGATAAAAAGATGGCCTAAAATAAACAAAGAATACCGAATTCCAATTCCTGGTTTTCAACCCTACAATCTAAATCTATTCAGATTAATATGGAGGACTATATTTGTGATCACAACCACTGTGATAGCAATGTTGATTCCTTTCTTCAATGATGTTTTGGGATTACTTGGAGCAGTAGGGTTTTGGCCTTTAACAGTCTATTTTCCAGTGGAGATGTATATCAAACAAAAAAAGATCCCAAAATGGAGTTATAAATGGATTAGTATGCAAATTTTAAGTGTTGTATGTCTTGTAGTATCAGTTGTGGCTGTTGTTGGGTCAGTGGCAAGTATTCAGCTTGATCTAAAGAAATACAAACCATTCACAACTGATTATTGA
Protein sequence

>Msa0427730

MEVEHSIEAAVPSHKDSNLYDDDDRLKRTGTVWTTSSHIITAVVGSGVLSLAWAIAQLGWVIGPSVMIFFSLITWYTSSLLAECYRIGDPHYGKRNYTFMEAVHTILGGFNDTLCGIVQYTNLYGTAIGYTIAGAISMMAIKRSDCLHSSGGKDSCHISSNLYMIAFGVIQIFFSQIPDFDKMWWLSIVAAIMSFTYSFIGLGLAVAKVAENGSFKGSLTGVSIGTVTKAQKVWGTFQALGNIAFAYSYSQILIEIQDTIKNPPSEVKTMKQATKISIGVTTAFYMLCGCMGYAAFGDTAPGNLLTGIFNPYWLIDIANAAIVIHLVGAYQVYAQPFFAFVEKIVIKRWPKINKEYRIPIPGFQPYNLNLFRLIWRTIFVITTTVIAMLIPFFNDVLGLLGAVGFWPLTVYFPVEMYIKQKKIPKWSYKWISMQILSVVCLVVSVVAVVGSVASIQLDLKKYKPFTTDY*