AlfalfaGEDB | Msa0427980

M. sativa cultivar zhongmu-4 / Msa0427980

KEGG: -
GO: GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015172 GO:0015175 GO:0015318 GO:0015399 GO:0015711 GO:0015800 GO:0015804 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039
PFAM: PF01490.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0427980	XP_039687650.1	98.927	466	4	1	1	466	1	465	0.0	938

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0427980	sp\|Q38967\|AAP2_ARATH	69.247	465	137	3	11	469	29	493	0.0	689

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0427980	G8A1P0	98.927	466	4	1	1	466	1	465	0.0	938

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0076670	Msa0427980	0.802657	5.056821e-49	-8.615850e-47
Msa0078610	Msa0427980	0.835354	1.762557e-56	-8.615850e-47
Msa0100080	Msa0427980	0.805167	1.521269e-49	-8.615850e-47
Msa0197660	Msa0427980	0.815182	1.054096e-51	-8.615850e-47
Msa0220490	Msa0427980	0.813647	2.303034e-51	-8.615850e-47
Msa0239800	Msa0427980	0.815136	1.079201e-51	-8.615850e-47
Msa0268090	Msa0427980	0.809654	1.700264e-50	-8.615850e-47
Msa0314120	Msa0427980	0.829508	4.949851e-55	-8.615850e-47
Msa0317510	Msa0427980	0.817238	3.658516e-52	-8.615850e-47
Msa0340690	Msa0427980	0.814101	1.828873e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0427980	MtrunA17_Chr3g0130651	98.927	466	4	1	1	466	1	465	938
Msa0427980	MtrunA17_Chr8g0384661	70.968	465	127	2	7	469	36	494	699
Msa0427980	MtrunA17_Chr3g0130641	71.368	468	131	2	4	469	11	477	698
Msa0427980	MtrunA17_Chr3g0125091	68.008	472	143	4	4	469	11	480	677
Msa0427980	MtrunA17_Chr3g0125081	67.516	471	146	3	4	469	11	479	677
Msa0427980	MtrunA17_Chr3g0125101	66.737	472	149	4	4	469	11	480	661
Msa0427980	MtrunA17_Chr4g0037201	63.674	479	163	3	2	469	34	512	645
Msa0427980	MtrunA17_Chr1g0159761	66.737	472	146	4	4	469	9	475	645
Msa0427980	MtrunA17_Chr3g0140761	56.438	466	196	4	7	465	13	478	540
Msa0427980	MtrunA17_Chr1g0146491	56.077	469	199	4	7	468	3	471	539

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0427980	AT5G09220.1	69.247	465	137	3	11	469	29	493	0.0	689
Msa0427980	AT1G77380.1	69.612	464	136	2	11	469	13	476	0.0	671
Msa0427980	AT5G63850.1	67.982	456	140	3	20	469	11	466	0.0	667
Msa0427980	AT1G44100.1	64.375	480	160	3	1	469	1	480	0.0	652
Msa0427980	AT1G58360.1	55.629	453	195	3	21	467	30	482	0.0	537
Msa0427980	AT1G10010.1	56.541	451	190	3	21	465	21	471	0.0	535
Msa0427980	AT1G10010.2	56.541	451	190	3	21	465	22	472	0.0	535
Msa0427980	AT5G49630.1	56.276	478	196	8	1	465	1	478	0.0	531
Msa0427980	AT5G23810.1	47.732	463	226	7	1	452	1	458	1.20e-142	417
Msa0427980	AT5G23810.2	48.286	350	172	5	1	345	1	346	5.41e-108	325

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Find 109 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGAAACTATACTTTCA+TGG	0.411359	3_2:+78713776	Msa0427980:CDS
AAATTGGAGTCTTTGTGTGA+AGG	0.608942	3_2:-78713355	None:intergenic
AACTTGGGTAGTGACTTATG+TGG	0.644765	3_2:+78716417	Msa0427980:three_prime_UTR
AATCAACATTGCTATCACAG+TGG	0.767055	3_2:-78716112	None:intergenic
AATCTATACATGATAGCATT+TGG	0.421990	3_2:+78715056	Msa0427980:CDS
AATCTTTACGGAACTGCAAT+AGG	0.394383	3_2:+78714292	Msa0427980:CDS
ACAACAAAGAAACCTGCTTT+TGG	0.304532	3_2:+78712141	Msa0427980:five_prime_UTR
ACACAATCTAGAATTTGACA+TGG	0.702429	3_2:+78713303	Msa0427980:exon
ACAGAAAATGGTTCCTTCAA+GGG	0.502482	3_2:+78715299	Msa0427980:intron
ACCAAGGCCAATAAAGGAAT+AGG	0.466847	3_2:-78715162	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGACACATAGAAAAAGAAG+TGG	+	chr3_2:78712476-78712495	Msa0427980:intron	30.0%
CTAAAATTACCCCATACTAA+TGG	+	chr3_2:78712853-78712872	Msa0427980:intron	30.0%
TAATTGAGAGAAGGGTTATT+TGG	-	chr3_2:78713214-78713233	None:intergenic	30.0%
GAGACAAAATAATTGAGAGA+AGG	-	chr3_2:78713223-78713242	None:intergenic	30.0%
GTCATCATCATCATACAAAT+TGG	-	chr3_2:78713374-78713393	None:intergenic	30.0%
CTGAAGAAAATCATAACTGA+AGG	-	chr3_2:78713690-78713709	None:intergenic	30.0%
TTAGCTGAATGTTATCGAAT+TGG	+	chr3_2:78713738-78713757	Msa0427980:CDS	30.0%
TTCAACAGTCCAATTTGATT+TGG	-	chr3_2:78713885-78713904	None:intergenic	30.0%
GTTCAGTACACAAATCTTTA+CGG	+	chr3_2:78714280-78714299	Msa0427980:CDS	30.0%
ACAGAAATAAGGTCAATTAC+TGG	-	chr3_2:78714904-78714923	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	78712122	78716727	78712122	ID=Msa0427980;Name=Msa0427980
chr3_2	mRNA	78712122	78716727	78712122	ID=Msa0427980-mRNA-1;Parent=Msa0427980;Name=Msa0427980-mRNA-1;_AED=0.32;_eAED=0.32;_QI=142\|1\|1\|1\|0.62\|0.44\|9\|230\|469
chr3_2	exon	78712122	78712171	78712122	ID=Msa0427980-mRNA-1:exon:20955;Parent=Msa0427980-mRNA-1
chr3_2	exon	78713136	78713197	78713136	ID=Msa0427980-mRNA-1:exon:20956;Parent=Msa0427980-mRNA-1
chr3_2	exon	78713292	78713409	78713292	ID=Msa0427980-mRNA-1:exon:20957;Parent=Msa0427980-mRNA-1
chr3_2	exon	78713586	78713819	78713586	ID=Msa0427980-mRNA-1:exon:20958;Parent=Msa0427980-mRNA-1
chr3_2	exon	78714251	78714344	78714251	ID=Msa0427980-mRNA-1:exon:20959;Parent=Msa0427980-mRNA-1
chr3_2	exon	78714992	78715206	78714992	ID=Msa0427980-mRNA-1:exon:20960;Parent=Msa0427980-mRNA-1
chr3_2	exon	78715303	78715442	78715303	ID=Msa0427980-mRNA-1:exon:20961;Parent=Msa0427980-mRNA-1
chr3_2	exon	78715736	78716514	78715736	ID=Msa0427980-mRNA-1:exon:20962;Parent=Msa0427980-mRNA-1
chr3_2	exon	78716638	78716727	78716638	ID=Msa0427980-mRNA-1:exon:20963;Parent=Msa0427980-mRNA-1
chr3_2	five_prime_UTR	78712122	78712171	78712122	ID=Msa0427980-mRNA-1:five_prime_utr;Parent=Msa0427980-mRNA-1
chr3_2	five_prime_UTR	78713136	78713197	78713136	ID=Msa0427980-mRNA-1:five_prime_utr;Parent=Msa0427980-mRNA-1
chr3_2	five_prime_UTR	78713292	78713321	78713292	ID=Msa0427980-mRNA-1:five_prime_utr;Parent=Msa0427980-mRNA-1
chr3_2	CDS	78713322	78713409	78713322	ID=Msa0427980-mRNA-1:cds;Parent=Msa0427980-mRNA-1
chr3_2	CDS	78713586	78713819	78713586	ID=Msa0427980-mRNA-1:cds;Parent=Msa0427980-mRNA-1
chr3_2	CDS	78714251	78714344	78714251	ID=Msa0427980-mRNA-1:cds;Parent=Msa0427980-mRNA-1
chr3_2	CDS	78714992	78715206	78714992	ID=Msa0427980-mRNA-1:cds;Parent=Msa0427980-mRNA-1
chr3_2	CDS	78715303	78715442	78715303	ID=Msa0427980-mRNA-1:cds;Parent=Msa0427980-mRNA-1
chr3_2	CDS	78715736	78716374	78715736	ID=Msa0427980-mRNA-1:cds;Parent=Msa0427980-mRNA-1
chr3_2	three_prime_UTR	78716375	78716514	78716375	ID=Msa0427980-mRNA-1:three_prime_utr;Parent=Msa0427980-mRNA-1
chr3_2	three_prime_UTR	78716638	78716727	78716638	ID=Msa0427980-mRNA-1:three_prime_utr;Parent=Msa0427980-mRNA-1

Gene Sequence

>Msa0427980

ATGGAGGTGGAACACTCTATAGAAGCTGCTGTTCCTTCACACAAAGACTCCAATTTGTATGATGATGATGACCGTCTCAAAAGAACAGGAACGGTTTGGACAACAAGTTCGCACATAATAACAGCAGTTGTAGGATCAGGAGTGTTGTCGTTAGCATGGGCAATAGCTCAGTTGGGTTGGGTGATTGGTCCTTCAGTTATGATTTTCTTCAGTCTCATCACTTGGTATACTTCATCACTTTTAGCTGAATGTTATCGAATTGGCGATCCTCATTACGGAAAGAGAAACTATACTTTCATGGAAGCTGTTCACACCATTCTGGGAGGTTTCAATGACACCCTTTGTGGGATAGTTCAGTACACAAATCTTTACGGAACTGCAATAGGATACACAATTGCGGGTGCCATTAGCATGATGGCAATAAAAAGGTCTGACTGTTTGCATTCCTCAGGAGGAAAAGACTCATGTCACATTTCAAGCAATCTATACATGATAGCATTTGGAGTAATCCAAATTTTCTTTTCTCAAATTCCAGATTTTGATAAAATGTGGTGGCTCTCAATAGTTGCAGCAATCATGTCTTTCACCTATTCCTTTATTGGCCTTGGTCTAGCAGTTGCCAAAGTTGCAGAAAATGGTTCCTTCAAGGGTAGCCTTACAGGAGTAAGCATTGGAACTGTGACAAAAGCCCAAAAAGTATGGGGAACTTTCCAAGCTCTTGGCAACATAGCCTTTGCATATTCATATTCTCAAATTCTCATTGAAATTCAGGACACCATAAAAAATCCACCATCTGAAGTAAAAACAATGAAGCAAGCCACAAAGATAAGTATAGGTGTGACAACTGCATTTTATATGCTTTGTGGCTGCATGGGTTATGCAGCATTTGGAGACACAGCACCAGGGAACTTACTCACTGGAATTTTTAATCCATATTGGCTCATTGATATTGCTAATGCCGCTATCGTAATTCACCTTGTGGGAGCATACCAAGTATACGCGCAACCCTTCTTTGCTTTCGTCGAGAAAATTGTGATAAAAAGATGGCCTAAAATAAACAAAGAATACCGAATTCCAATTCCTGGTTTTCAACCCTACAATCTAAATCTATTCAGATTAATATGGAGGACTATATTTGTGATCACAACCACTGTGATAGCAATGTTGATTCCTTTCTTCAATGATGTTTTGGGATTACTTGGAGCAGTAGGGTTTTGGCCTTTAACAGTCTATTTTCCAGTGGAGATGTATATCAAACAAAAAAAGATCCCAAAATGGAGTTATAAATGGATTAGTATGCAAATTTTAAGTGTTGTATGTCTTGTAGTATCAGTTGTGGCTGTTGTTGGGTCAGTGGCAAGTATTCAGCTTGATCTAAAGAAATACAAACCATTCACAACTGATTATTGA

Protein sequence

>Msa0427980

MEVEHSIEAAVPSHKDSNLYDDDDRLKRTGTVWTTSSHIITAVVGSGVLSLAWAIAQLGWVIGPSVMIFFSLITWYTSSLLAECYRIGDPHYGKRNYTFMEAVHTILGGFNDTLCGIVQYTNLYGTAIGYTIAGAISMMAIKRSDCLHSSGGKDSCHISSNLYMIAFGVIQIFFSQIPDFDKMWWLSIVAAIMSFTYSFIGLGLAVAKVAENGSFKGSLTGVSIGTVTKAQKVWGTFQALGNIAFAYSYSQILIEIQDTIKNPPSEVKTMKQATKISIGVTTAFYMLCGCMGYAAFGDTAPGNLLTGIFNPYWLIDIANAAIVIHLVGAYQVYAQPFFAFVEKIVIKRWPKINKEYRIPIPGFQPYNLNLFRLIWRTIFVITTTVIAMLIPFFNDVLGLLGAVGFWPLTVYFPVEMYIKQKKIPKWSYKWISMQILSVVCLVVSVVAVVGSVASIQLDLKKYKPFTTDY*