Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433730 | GAU14190.1 | 78.333 | 240 | 39 | 1 | 1 | 227 | 72 | 311 | 2.35e-108 | 327 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433730 | sp|Q8L7A0|TAUE3_ARATH | 80.405 | 148 | 29 | 0 | 2 | 149 | 75 | 222 | 2.14e-70 | 227 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433730 | A0A2K3N3I1 | 67.384 | 279 | 39 | 3 | 1 | 227 | 38 | 316 | 1.12e-90 | 284 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa0433730 | 0.807556 | 4.772070e-50 | -8.615850e-47 |
| Msa0218370 | Msa0433730 | 0.813186 | 2.907139e-51 | -8.615850e-47 |
| Msa0430420 | Msa0433730 | 0.806462 | 8.128698e-50 | -8.615850e-47 |
| Msa0433730 | Msa0455760 | 0.801392 | 9.201189e-49 | -8.615850e-47 |
| Msa0433730 | Msa0521630 | 0.840563 | 8.063046e-58 | -8.615850e-47 |
| Msa0433730 | Msa0817460 | 0.812850 | 3.444354e-51 | -8.615850e-47 |
| Msa0433730 | Msa0898750 | 0.802508 | 5.426174e-49 | -8.615850e-47 |
| Msa0433730 | Msa0928130 | 0.803399 | 3.550763e-49 | -8.615850e-47 |
| Msa0433730 | Msa0933100 | 0.809128 | 2.205619e-50 | -8.615850e-47 |
| Msa0433730 | Msa0969520 | 0.806145 | 9.484347e-50 | -8.615850e-47 |
| Msa0433730 | Msa1162780 | 0.805805 | 1.117863e-49 | -8.615850e-47 |
| Msa0433730 | Msa1163090 | 0.803526 | 3.342516e-49 | -8.615850e-47 |
| Msa0433730 | Msa1381530 | 0.874704 | 5.483476e-68 | -8.615850e-47 |
| Msa0433730 | Msa1466540 | 0.814257 | 1.688967e-51 | -8.615850e-47 |
| Msa0267370 | Msa0433730 | 0.810649 | 1.037866e-50 | -8.615850e-47 |
| Msa0363790 | Msa0433730 | 0.804604 | 1.994957e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433730 | MtrunA17_Chr3g0139541 | 87.248 | 149 | 19 | 0 | 1 | 149 | 73 | 221 | 3.35e-81 | 251 |
| Msa0433730 | MtrunA17_Chr5g0403901 | 69.737 | 152 | 46 | 0 | 1 | 152 | 76 | 227 | 4.74e-65 | 210 |
| Msa0433730 | MtrunA17_Chr8g0373471 | 74.126 | 143 | 37 | 0 | 1 | 143 | 69 | 211 | 1.36e-62 | 204 |
| Msa0433730 | MtrunA17_Chr7g0265481 | 63.014 | 146 | 54 | 0 | 4 | 149 | 60 | 205 | 3.07e-56 | 187 |
| Msa0433730 | MtrunA17_Chr8g0380211 | 65.541 | 148 | 51 | 0 | 1 | 148 | 74 | 221 | 7.13e-56 | 186 |
| Msa0433730 | MtrunA17_Chr1g0157751 | 61.589 | 151 | 58 | 0 | 1 | 151 | 53 | 203 | 1.63e-53 | 179 |
| Msa0433730 | MtrunA17_Chr1g0179621 | 57.534 | 146 | 62 | 0 | 1 | 146 | 58 | 203 | 1.01e-48 | 167 |
| Msa0433730 | MtrunA17_Chr8g0380191 | 46.667 | 210 | 76 | 1 | 54 | 227 | 10 | 219 | 1.04e-41 | 145 |
| Msa0433730 | MtrunA17_Chr2g0280401 | 33.898 | 118 | 77 | 1 | 32 | 148 | 87 | 204 | 1.98e-14 | 72.8 |
| Msa0433730 | MtrunA17_Chr3g0139621 | 63.077 | 65 | 24 | 0 | 166 | 230 | 31 | 95 | 2.30e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433730 | AT2G25737.2 | 80.405 | 148 | 29 | 0 | 2 | 149 | 75 | 222 | 2.46e-72 | 226 |
| Msa0433730 | AT2G25737.1 | 80.405 | 148 | 29 | 0 | 2 | 149 | 75 | 222 | 2.17e-71 | 227 |
| Msa0433730 | AT2G36630.1 | 54.605 | 152 | 69 | 0 | 1 | 152 | 54 | 205 | 6.80e-51 | 173 |
| Msa0433730 | AT1G11540.2 | 45.763 | 118 | 63 | 1 | 31 | 147 | 79 | 196 | 2.87e-23 | 98.6 |
| Msa0433730 | AT1G11540.1 | 46.018 | 113 | 60 | 1 | 36 | 147 | 1 | 113 | 4.01e-22 | 94.7 |
| Msa0433730 | AT1G61740.1 | 40.678 | 118 | 67 | 2 | 31 | 145 | 83 | 200 | 1.81e-19 | 87.8 |
| Msa0433730 | AT4G21260.1 | 34.711 | 121 | 74 | 2 | 34 | 154 | 73 | 188 | 6.43e-15 | 74.3 |
| Msa0433730 | AT4G21250.1 | 38.571 | 140 | 75 | 2 | 7 | 143 | 58 | 189 | 4.31e-11 | 63.2 |
Find 76 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTGTGTTGTTGCCTTAC+TGG | 0.078635 | 3_2:+86281076 | Msa0433730:CDS |
| CTCAAGTGAGTTTCAAATTT+TGG | 0.116495 | 3_2:+86281177 | Msa0433730:CDS |
| AGGTAGGATGCCTCAGTTTA+AGG | 0.184914 | 3_2:-86279040 | None:intergenic |
| TCAACTAAAGCATTCTTTAA+AGG | 0.195205 | 3_2:+86279297 | Msa0433730:CDS |
| GCAACGTTATATTTCCTAAT+TGG | 0.207868 | 3_2:+86279144 | Msa0433730:CDS |
| GATTGCTAATCATGAATATA+TGG | 0.212904 | 3_2:+86281911 | Msa0433730:three_prime_UTR |
| GTTATGCAGGAAATGGAATT+TGG | 0.220314 | 3_2:+86278316 | None:intergenic |
| ATTTGGGTGGCGAATTGTTT+TGG | 0.236205 | 3_2:+86278333 | Msa0433730:CDS |
| GAGATAGCCGTAGATGATTT+AGG | 0.240024 | 3_2:-86278457 | None:intergenic |
| GCCAAATCATAGTCAATAAT+TGG | 0.269429 | 3_2:-86279071 | None:intergenic |
| GCCAATTATTGACTATGATT+TGG | 0.277334 | 3_2:+86279070 | Msa0433730:CDS |
| TTATTGTTCTCTCTTCTAAT+TGG | 0.285522 | 3_2:+86282103 | Msa0433730:three_prime_UTR |
| TTGGGTATTGAACTTCTTAC+AGG | 0.285530 | 3_2:+86280821 | Msa0433730:CDS |
| CAACTAAAGCATTCTTTAAA+GGG | 0.285668 | 3_2:+86279298 | Msa0433730:CDS |
| AATATAGTCACAAGCCAATT+AGG | 0.287287 | 3_2:-86279158 | None:intergenic |
| AAAATAATAGAGAGAGAAAA+AGG | 0.299493 | 3_2:+86282129 | Msa0433730:three_prime_UTR |
| CTATGATTAGTCTTATTATT+GGG | 0.302506 | 3_2:+86278428 | Msa0433730:CDS |
| TAAGGAAACCATAATGAAAA+AGG | 0.303076 | 3_2:+86279335 | Msa0433730:CDS |
| TCTATGATTAGTCTTATTAT+TGG | 0.311454 | 3_2:+86278427 | Msa0433730:CDS |
| AGGGGTTGAGACATGGAATA+AGG | 0.326091 | 3_2:+86279317 | Msa0433730:CDS |
| TATTATCTGCAAGTGTTAGA+AGG | 0.353439 | 3_2:+86281981 | Msa0433730:three_prime_UTR |
| TACATGTTCAACAGCGTATT+GGG | 0.363267 | 3_2:+86280803 | Msa0433730:CDS |
| TTTGAGAATATCTGCATGTA+TGG | 0.373890 | 3_2:+86281936 | Msa0433730:three_prime_UTR |
| TGGCGTACTCGGTGGATTGT+TGG | 0.379079 | 3_2:+86281100 | Msa0433730:CDS |
| TTTGGAAGCGTTGGTGGTAT+TGG | 0.379280 | 3_2:+86278385 | Msa0433730:CDS |
| AAAAGATAATGATCCTATTT+GGG | 0.391000 | 3_2:+86281587 | Msa0433730:CDS |
| TGTATGGGTCGTAGCACATT+TGG | 0.393841 | 3_2:+86281952 | Msa0433730:three_prime_UTR |
| TGATAGATGCTCTCCCAAAT+AGG | 0.395109 | 3_2:-86281600 | None:intergenic |
| GCCTTACTGGCTGGCGTACT+CGG | 0.400106 | 3_2:+86281089 | Msa0433730:CDS |
| TTCTTTCTCTTGGTCACCTA+TGG | 0.401087 | 3_2:-86281030 | None:intergenic |
| GGCGTACTCGGTGGATTGTT+GGG | 0.402747 | 3_2:+86281101 | Msa0433730:CDS |
| TTTATCAGTGCAATCTTACT+TGG | 0.406903 | 3_2:+86281649 | Msa0433730:three_prime_UTR |
| TTATGCAGGAAATGGAATTT+GGG | 0.411245 | 3_2:+86278317 | None:intergenic |
| TAGCTGTAAATTCTTTCTCT+TGG | 0.412852 | 3_2:-86281040 | None:intergenic |
| TATGGTCATGGGTGTGTCTC+TGG | 0.422703 | 3_2:+86279001 | Msa0433730:CDS |
| CAACACAATAGATGATTAGT+TGG | 0.440714 | 3_2:-86281064 | None:intergenic |
| TGTGTTGTTGCCTTACTGGC+TGG | 0.441168 | 3_2:+86281080 | Msa0433730:CDS |
| GTATGGGTCGTAGCACATTT+GGG | 0.453714 | 3_2:+86281953 | Msa0433730:three_prime_UTR |
| CTACATGTTCAACAGCGTAT+TGG | 0.454017 | 3_2:+86280802 | Msa0433730:CDS |
| GGAAGCGTTGGTGGTATTGG+TGG | 0.457442 | 3_2:+86278388 | Msa0433730:CDS |
| CGCAGCTCTTTACTTCATCC+TGG | 0.467907 | 3_2:+86281525 | Msa0433730:intron |
| ACCGAGTACGCCAGCCAGTA+AGG | 0.475453 | 3_2:-86281090 | None:intergenic |
| ATTGCTAATCATGAATATAT+GGG | 0.479029 | 3_2:+86281912 | Msa0433730:three_prime_UTR |
| GTTTGCTTCAGGTATGGTCA+TGG | 0.490765 | 3_2:+86278989 | Msa0433730:intron |
| ATTCAACCTATGCTTATGCT+TGG | 0.496468 | 3_2:+86279101 | Msa0433730:CDS |
| AATTAGAAGAGAGAACAATA+AGG | 0.512234 | 3_2:-86282101 | None:intergenic |
| AGCGTTGGTGGTATTGGTGG+TGG | 0.516406 | 3_2:+86278391 | Msa0433730:CDS |
| CTTATGCTTGGAATCAGCAT+TGG | 0.519202 | 3_2:+86279113 | Msa0433730:CDS |
| GCTAGGAGACAAGAAACAAT+TGG | 0.520434 | 3_2:+86280279 | Msa0433730:CDS |
| GCAGCGTTTGGAAGCGTTGG+TGG | 0.522663 | 3_2:+86278379 | Msa0433730:CDS |
| GGATTGTTGGGACTAGGAGG+CGG | 0.524109 | 3_2:+86281113 | Msa0433730:CDS |
| TTTGCTTCAGGTATGGTCAT+GGG | 0.524119 | 3_2:+86278990 | Msa0433730:intron |
| GTTTGATCCTAAATCATCTA+CGG | 0.525763 | 3_2:+86278450 | Msa0433730:CDS |
| CGGAGTTGGCATTGTAAACA+TGG | 0.533788 | 3_2:+86281881 | Msa0433730:three_prime_UTR |
| CTCGGTGGATTGTTGGGACT+AGG | 0.537823 | 3_2:+86281107 | Msa0433730:CDS |
| TCTTTAAAGGGGTTGAGACA+TGG | 0.539156 | 3_2:+86279310 | Msa0433730:CDS |
| TAAACTGAGGCATCCTACCT+TGG | 0.541474 | 3_2:+86279043 | Msa0433730:CDS |
| GTTGGTGGTATTGGTGGTGG+TGG | 0.551633 | 3_2:+86278394 | Msa0433730:CDS |
| AACTAAAGCATTCTTTAAAG+GGG | 0.553035 | 3_2:+86279299 | Msa0433730:CDS |
| GTCAATAATTGGCATGTCCA+AGG | 0.558233 | 3_2:-86279060 | None:intergenic |
| ATTAATTCTAGGAGGCTGCT+AGG | 0.562613 | 3_2:+86280262 | Msa0433730:intron |
| CAGAAAATATTGTCCAACCA+AGG | 0.567297 | 3_2:-86281563 | None:intergenic |
| GTCAAAATCACTCCATGACT+AGG | 0.578526 | 3_2:-86282022 | None:intergenic |
| ATTTGAAACTCACTTGAGGA+GGG | 0.578779 | 3_2:-86281172 | None:intergenic |
| AATTTGAAACTCACTTGAGG+AGG | 0.583316 | 3_2:-86281173 | None:intergenic |
| GGAGCAGCGTTTGGAAGCGT+TGG | 0.584096 | 3_2:+86278376 | Msa0433730:CDS |
| ACTAGGAGGCGGATTCATGT+TGG | 0.598929 | 3_2:+86281124 | Msa0433730:CDS |
| TTGAGAATATCTGCATGTAT+GGG | 0.599525 | 3_2:+86281937 | Msa0433730:three_prime_UTR |
| CAAAATTTGAAACTCACTTG+AGG | 0.601039 | 3_2:-86281176 | None:intergenic |
| TGCAGGAAATGGAATTTGGG+TGG | 0.610262 | 3_2:+86278320 | None:intergenic |
| CTGATTCCAAGCATAAGCAT+AGG | 0.613635 | 3_2:-86279107 | None:intergenic |
| ATAATTGGCATGTCCAAGGT+AGG | 0.619549 | 3_2:-86279056 | None:intergenic |
| AGCTCTTTACTTCATCCTGG+TGG | 0.620742 | 3_2:+86281528 | Msa0433730:intron |
| TTACTGGCTGGCGTACTCGG+TGG | 0.621474 | 3_2:+86281092 | Msa0433730:CDS |
| GGTGGATTGTTGGGACTAGG+AGG | 0.632796 | 3_2:+86281110 | Msa0433730:CDS |
| AGGCTGCAATAAAAGCCACC+AGG | 0.645628 | 3_2:-86281543 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTTAAAAAAAAAAATTG+GGG | - | chr3_2:86279937-86279956 | None:intergenic | 10.0% |
| !! | TTTCAAATATAAGAAAAATT+TGG | + | chr3_2:86281415-86281434 | Msa0433730:intron | 10.0% |
| !!! | ATTTTATCTTTAATATCTAC+TGG | - | chr3_2:86278926-86278945 | None:intergenic | 15.0% |
| !!! | TGTTATTTTTTATTTGTCTT+GGG | + | chr3_2:86279741-86279760 | Msa0433730:intron | 15.0% |
| !! | TGAGAAATTGTTATAAATAA+CGG | - | chr3_2:86279912-86279931 | None:intergenic | 15.0% |
| !!! | TCAAAACTAACAATATTTTT+AGG | - | chr3_2:86280082-86280101 | None:intergenic | 15.0% |
| !!! | ATTTTATTTTGTTTAGATTC+TGG | + | chr3_2:86280387-86280406 | Msa0433730:intron | 15.0% |
| !! | TATAAATATCTAAACCAAAT+AGG | - | chr3_2:86281691-86281710 | None:intergenic | 15.0% |
| !!! | TGTTTTTCATTCATTTTATT+AGG | + | chr3_2:86281858-86281877 | Msa0433730:intron | 15.0% |
| !!! | TCTATGATTAGTCTTATTAT+TGG | + | chr3_2:86278427-86278446 | Msa0433730:CDS | 20.0% |
| !!! | CTATGATTAGTCTTATTATT+GGG | + | chr3_2:86278428-86278447 | Msa0433730:CDS | 20.0% |
| !! | TAACATAATTAGGAAGATAT+TGG | + | chr3_2:86278549-86278568 | Msa0433730:intron | 20.0% |
| !! | TTGAAAGTTTAAAGATAGAT+CGG | + | chr3_2:86278823-86278842 | Msa0433730:intron | 20.0% |
| !!! | TTGCTTATTGTTCTTTTTTT+CGG | + | chr3_2:86279179-86279198 | Msa0433730:CDS | 20.0% |
| !! | ATAAAAAGAAATACAGTTAG+AGG | - | chr3_2:86279263-86279282 | None:intergenic | 20.0% |
| !!! | TATTTCTTTTTATCTTTTCC+AGG | + | chr3_2:86279270-86279289 | Msa0433730:intron | 20.0% |
| !!! | TAATAGTTTTCACTTCATAT+TGG | + | chr3_2:86279378-86279397 | Msa0433730:intron | 20.0% |
| !!! | AACTTTATTTCATAAACTCA+AGG | + | chr3_2:86279510-86279529 | Msa0433730:intron | 20.0% |
| !!! | TAGTTTTTTTTTTTCCTTAC+GGG | - | chr3_2:86279621-86279640 | None:intergenic | 20.0% |
| !!! | GTAGTTTTTTTTTTTCCTTA+CGG | - | chr3_2:86279622-86279641 | None:intergenic | 20.0% |
| !!! | GTGTTATTTTTTATTTGTCT+TGG | + | chr3_2:86279740-86279759 | Msa0433730:intron | 20.0% |
| !!! | GTTATTTTTTATTTGTCTTG+GGG | + | chr3_2:86279742-86279761 | Msa0433730:intron | 20.0% |
| !!! | TTATTTTTTATTTGTCTTGG+GGG | + | chr3_2:86279743-86279762 | Msa0433730:intron | 20.0% |
| !!! | TTGTGTAGTTTTTTTTTCTT+AGG | + | chr3_2:86279801-86279820 | Msa0433730:intron | 20.0% |
| !!! | TGTGTAGTTTTTTTTTCTTA+GGG | + | chr3_2:86279802-86279821 | Msa0433730:intron | 20.0% |
| !! | CAATCATAATTATGTTTGTA+TGG | - | chr3_2:86280005-86280024 | None:intergenic | 20.0% |
| !! | CCATTATCATTAATACAAAA+TGG | - | chr3_2:86280172-86280191 | None:intergenic | 20.0% |
| !!! | CCATTTTGTATTAATGATAA+TGG | + | chr3_2:86280169-86280188 | Msa0433730:intron | 20.0% |
| !! | GACATAAGAAAAAATGATTT+CGG | - | chr3_2:86280355-86280374 | None:intergenic | 20.0% |
| !!! | AATTTGACTTTGTAATTGAA+AGG | - | chr3_2:86280534-86280553 | None:intergenic | 20.0% |
| !! | TGTTATAAACTGTTAGTATA+TGG | - | chr3_2:86280727-86280746 | None:intergenic | 20.0% |
| !! | AAAAAGATAATGATCCTATT+TGG | + | chr3_2:86281586-86281605 | Msa0433730:CDS | 20.0% |
| !! | AAAAGATAATGATCCTATTT+GGG | + | chr3_2:86281587-86281606 | Msa0433730:CDS | 20.0% |
| !!! | TCTCTTCAAACTTTTTTTTA+GGG | + | chr3_2:86281717-86281736 | Msa0433730:intron | 20.0% |
| !!! | TTTTCATTCATTTTATTAGG+CGG | + | chr3_2:86281861-86281880 | Msa0433730:intron | 20.0% |
| !! | ATTGCTAATCATGAATATAT+GGG | + | chr3_2:86281912-86281931 | Msa0433730:three_prime_UTR | 20.0% |
| !! | AAAATAATAGAGAGAGAAAA+AGG | + | chr3_2:86282129-86282148 | Msa0433730:three_prime_UTR | 20.0% |
| !!! | ATTGTTTTGGGTAGTTTTAT+TGG | + | chr3_2:86278346-86278365 | Msa0433730:CDS | 25.0% |
| !!! | ATCATGCTAGTTTTTACTAT+AGG | + | chr3_2:86278521-86278540 | Msa0433730:intron | 25.0% |
| ! | ATAGGTTGTGTAACATAATT+AGG | + | chr3_2:86278539-86278558 | Msa0433730:intron | 25.0% |
| !! | TACTGGCAATTTACATTTTA+AGG | - | chr3_2:86278909-86278928 | None:intergenic | 25.0% |
| ! | GGAAAAAACAGTTGAATTAA+TGG | - | chr3_2:86279208-86279227 | None:intergenic | 25.0% |
| !! | TCAACTAAAGCATTCTTTAA+AGG | + | chr3_2:86279297-86279316 | Msa0433730:CDS | 25.0% |
| !! | CAACTAAAGCATTCTTTAAA+GGG | + | chr3_2:86279298-86279317 | Msa0433730:CDS | 25.0% |
| !! | AACTAAAGCATTCTTTAAAG+GGG | + | chr3_2:86279299-86279318 | Msa0433730:CDS | 25.0% |
| ! | TAAGGAAACCATAATGAAAA+AGG | + | chr3_2:86279335-86279354 | Msa0433730:CDS | 25.0% |
| !!! | AAAAGAGACCTTTTTCATTA+TGG | - | chr3_2:86279346-86279365 | None:intergenic | 25.0% |
| !! | CCTTACATTTAAAACTATAC+TGG | - | chr3_2:86279408-86279427 | None:intergenic | 25.0% |
| !!! | CCAGTATAGTTTTAAATGTA+AGG | + | chr3_2:86279405-86279424 | Msa0433730:intron | 25.0% |
| !!! | TGTAAGGAGAAAATGTTTTT+TGG | + | chr3_2:86279421-86279440 | Msa0433730:intron | 25.0% |
| ! | GACAAATAAAAAATAACACG+TGG | - | chr3_2:86279739-86279758 | None:intergenic | 25.0% |
| !!! | GTGTAGTTTTTTTTTCTTAG+GGG | + | chr3_2:86279803-86279822 | Msa0433730:intron | 25.0% |
| !!! | TGTAGTTTTTTTTTCTTAGG+GGG | + | chr3_2:86279804-86279823 | Msa0433730:intron | 25.0% |
| !!! | CAAATAGTCATTTTACAACT+AGG | - | chr3_2:86279884-86279903 | None:intergenic | 25.0% |
| ! | GAAATTGTTATAAATAACGG+TGG | - | chr3_2:86279909-86279928 | None:intergenic | 25.0% |
| ! | CAATTAGTTAGTCATAACTT+TGG | - | chr3_2:86280227-86280246 | None:intergenic | 25.0% |
| ! | AATTGTTAAATGGCTATTAG+CGG | - | chr3_2:86280486-86280505 | None:intergenic | 25.0% |
| ! | ACTTCTTACAGGTAATAATT+TGG | + | chr3_2:86280832-86280851 | Msa0433730:intron | 25.0% |
| ! | AGCAAAAATTGAGTGATAAT+AGG | - | chr3_2:86280859-86280878 | None:intergenic | 25.0% |
| ! | TATCTTGATCATCAAATAGT+TGG | + | chr3_2:86281221-86281240 | Msa0433730:intron | 25.0% |
| !! | TTTCTTATATTTGAAACCGA+AGG | - | chr3_2:86281411-86281430 | None:intergenic | 25.0% |
| ! | CTAAAAAAAAGTTTGAAGAG+AGG | - | chr3_2:86281718-86281737 | None:intergenic | 25.0% |
| !!! | CTCTCTTCAAACTTTTTTTT+AGG | + | chr3_2:86281716-86281735 | Msa0433730:intron | 25.0% |
| ! | AACATCTCAAAATTCATAAG+CGG | - | chr3_2:86281842-86281861 | None:intergenic | 25.0% |
| ! | GATTGCTAATCATGAATATA+TGG | + | chr3_2:86281911-86281930 | Msa0433730:three_prime_UTR | 25.0% |
| !!! | ACTATTTTAGTACAACTCTT+AGG | + | chr3_2:86282074-86282093 | Msa0433730:three_prime_UTR | 25.0% |
| ! | AATTAGAAGAGAGAACAATA+AGG | - | chr3_2:86282104-86282123 | None:intergenic | 25.0% |
| ! | TTATTGTTCTCTCTTCTAAT+TGG | + | chr3_2:86282103-86282122 | Msa0433730:three_prime_UTR | 25.0% |
| !!! | GGTAGTTTTATTGGTTTTTG+TGG | + | chr3_2:86278355-86278374 | Msa0433730:CDS | 30.0% |
| GTTTGATCCTAAATCATCTA+CGG | + | chr3_2:86278450-86278469 | Msa0433730:CDS | 30.0% | |
| !!! | TTTACATTTTAAGGTGCGTT+TGG | - | chr3_2:86278900-86278919 | None:intergenic | 30.0% |
| ! | TTTTCTTCAACCTTAAACTG+AGG | + | chr3_2:86279030-86279049 | Msa0433730:CDS | 30.0% |
| ! | GCCAATTATTGACTATGATT+TGG | + | chr3_2:86279070-86279089 | Msa0433730:CDS | 30.0% |
| GCCAAATCATAGTCAATAAT+TGG | - | chr3_2:86279074-86279093 | None:intergenic | 30.0% | |
| GCAACGTTATATTTCCTAAT+TGG | + | chr3_2:86279144-86279163 | Msa0433730:CDS | 30.0% | |
| AATATAGTCACAAGCCAATT+AGG | - | chr3_2:86279161-86279180 | None:intergenic | 30.0% | |
| !!! | TTCAACTGTTTTTTCCAGTT+TGG | + | chr3_2:86279212-86279231 | Msa0433730:intron | 30.0% |
| TTAAGCCTTACAACTATCTT+AGG | - | chr3_2:86279554-86279573 | None:intergenic | 30.0% | |
| ATTACAGTTGCAAAACTTAG+AGG | + | chr3_2:86279774-86279793 | Msa0433730:intron | 30.0% | |
| TTACAGTTGCAAAACTTAGA+GGG | + | chr3_2:86279775-86279794 | Msa0433730:intron | 30.0% | |
| CCTCAAAGACAATTGTTAAA+TGG | - | chr3_2:86280496-86280515 | None:intergenic | 30.0% | |
| CCATTTAACAATTGTCTTTG+AGG | + | chr3_2:86280493-86280512 | Msa0433730:intron | 30.0% | |
| ACCTCATAAACGTAACAATA+TGG | + | chr3_2:86280571-86280590 | Msa0433730:intron | 30.0% | |
| ACCATATTGTTACGTTTATG+AGG | - | chr3_2:86280575-86280594 | None:intergenic | 30.0% | |
| ! | GTAACAATATGGTGATTTGT+AGG | + | chr3_2:86280582-86280601 | Msa0433730:intron | 30.0% |
| CTATAATTGAAAATGTGCAC+TGG | + | chr3_2:86280608-86280627 | Msa0433730:intron | 30.0% | |
| TGCTGTCAATAGAAAAACAT+TGG | - | chr3_2:86280771-86280790 | None:intergenic | 30.0% | |
| !! | AAAAAAGCATTAGCTTCCAT+AGG | + | chr3_2:86281014-86281033 | Msa0433730:CDS | 30.0% |
| TAGCTGTAAATTCTTTCTCT+TGG | - | chr3_2:86281043-86281062 | None:intergenic | 30.0% | |
| CAACACAATAGATGATTAGT+TGG | - | chr3_2:86281067-86281086 | None:intergenic | 30.0% | |
| ! | CAAAATTTGAAACTCACTTG+AGG | - | chr3_2:86281179-86281198 | None:intergenic | 30.0% |
| ! | CTCAAGTGAGTTTCAAATTT+TGG | + | chr3_2:86281177-86281196 | Msa0433730:CDS | 30.0% |
| TTGATCATCAAATAGTTGGT+TGG | + | chr3_2:86281225-86281244 | Msa0433730:intron | 30.0% | |
| TTTATCAGTGCAATCTTACT+TGG | + | chr3_2:86281649-86281668 | Msa0433730:three_prime_UTR | 30.0% | |
| ! | AGCGTACAAATTTTCCTATT+TGG | + | chr3_2:86281674-86281693 | Msa0433730:intron | 30.0% |
| GGCAGCATTATATTTAACAT+AGG | + | chr3_2:86281762-86281781 | Msa0433730:intron | 30.0% | |
| TTTGAGAATATCTGCATGTA+TGG | + | chr3_2:86281936-86281955 | Msa0433730:three_prime_UTR | 30.0% | |
| TTGAGAATATCTGCATGTAT+GGG | + | chr3_2:86281937-86281956 | Msa0433730:three_prime_UTR | 30.0% | |
| TATTATCTGCAAGTGTTAGA+AGG | + | chr3_2:86281981-86282000 | Msa0433730:three_prime_UTR | 30.0% | |
| !! | GTTTTATTATTGCCTAGTCA+TGG | + | chr3_2:86282010-86282029 | Msa0433730:three_prime_UTR | 30.0% |
| GAGATGCAGTAACTAAACAT+TGG | + | chr3_2:86278653-86278672 | Msa0433730:intron | 35.0% | |
| CTCATAAGCGCATATGTATA+AGG | + | chr3_2:86278702-86278721 | Msa0433730:intron | 35.0% | |
| ! | TTTTCTGTTTGCTTCAGGTA+TGG | + | chr3_2:86278983-86279002 | Msa0433730:intron | 35.0% |
| ATTCAACCTATGCTTATGCT+TGG | + | chr3_2:86279101-86279120 | Msa0433730:CDS | 35.0% | |
| AGAAAACAAGAATGCCAAAC+TGG | - | chr3_2:86279229-86279248 | None:intergenic | 35.0% | |
| ! | AATGCTTTAGTTGATATGCC+TGG | - | chr3_2:86279291-86279310 | None:intergenic | 35.0% |
| AAACAAACACTTCTTGGAGA+TGG | - | chr3_2:86279481-86279500 | None:intergenic | 35.0% | |
| !! | TCCAAGAAGTGTTTGTTTAG+TGG | + | chr3_2:86279483-86279502 | Msa0433730:intron | 35.0% |
| ACCACTAAACAAACACTTCT+TGG | - | chr3_2:86279487-86279506 | None:intergenic | 35.0% | |
| TTTCATAAACTCAAGGAGCA+TGG | + | chr3_2:86279517-86279536 | Msa0433730:intron | 35.0% | |
| AGCCTGTCTTGATTAATTCT+AGG | + | chr3_2:86280251-86280270 | Msa0433730:intron | 35.0% | |
| CTCCTAGAATTAATCAAGAC+AGG | - | chr3_2:86280256-86280275 | None:intergenic | 35.0% | |
| CTGTCTTGATTAATTCTAGG+AGG | + | chr3_2:86280254-86280273 | Msa0433730:intron | 35.0% | |
| AATTGAAAATGTGCACTGGA+AGG | + | chr3_2:86280612-86280631 | Msa0433730:intron | 35.0% | |
| TTGGACTTCTAGCATTTGTT+TGG | + | chr3_2:86280638-86280657 | Msa0433730:intron | 35.0% | |
| TGGACTTCTAGCATTTGTTT+GGG | + | chr3_2:86280639-86280658 | Msa0433730:intron | 35.0% | |
| TACATGTTCAACAGCGTATT+GGG | + | chr3_2:86280803-86280822 | Msa0433730:CDS | 35.0% | |
| !! | TTGGGTATTGAACTTCTTAC+AGG | + | chr3_2:86280821-86280840 | Msa0433730:CDS | 35.0% |
| TGCAGATTCCAATCTCATTT+GGG | + | chr3_2:86280954-86280973 | Msa0433730:intron | 35.0% | |
| ! | TTTGGGGTAAACTGTATATG+AGG | + | chr3_2:86280971-86280990 | Msa0433730:intron | 35.0% |
| ! | ATTTGAAACTCACTTGAGGA+GGG | - | chr3_2:86281175-86281194 | None:intergenic | 35.0% |
| ! | AATTTGAAACTCACTTGAGG+AGG | - | chr3_2:86281176-86281195 | None:intergenic | 35.0% |
| !! | TGGTTGGTTTGATTCCTAAT+TGG | + | chr3_2:86281241-86281260 | Msa0433730:intron | 35.0% |
| CAGAAAATATTGTCCAACCA+AGG | - | chr3_2:86281566-86281585 | None:intergenic | 35.0% | |
| ! | TTCATTTTATTAGGCGGAGT+TGG | + | chr3_2:86281867-86281886 | Msa0433730:intron | 35.0% |
| ! | ATTTGGGTGGCGAATTGTTT+TGG | + | chr3_2:86278333-86278352 | Msa0433730:CDS | 40.0% |
| ! | TTTGGGTGGCGAATTGTTTT+GGG | + | chr3_2:86278334-86278353 | Msa0433730:CDS | 40.0% |
| GAGATAGCCGTAGATGATTT+AGG | - | chr3_2:86278460-86278479 | None:intergenic | 40.0% | |
| ACTAATCACTATTGCAGTGC+TGG | - | chr3_2:86278797-86278816 | None:intergenic | 40.0% | |
| ! | TACGGTTTTCTGTTTGCTTC+AGG | + | chr3_2:86278978-86278997 | Msa0433730:intron | 40.0% |
| TTTGCTTCAGGTATGGTCAT+GGG | + | chr3_2:86278990-86279009 | Msa0433730:intron | 40.0% | |
| ATAATTGGCATGTCCAAGGT+AGG | - | chr3_2:86279059-86279078 | None:intergenic | 40.0% | |
| GTCAATAATTGGCATGTCCA+AGG | - | chr3_2:86279063-86279082 | None:intergenic | 40.0% | |
| CTGATTCCAAGCATAAGCAT+AGG | - | chr3_2:86279110-86279129 | None:intergenic | 40.0% | |
| CTTATGCTTGGAATCAGCAT+TGG | + | chr3_2:86279113-86279132 | Msa0433730:CDS | 40.0% | |
| ! | TCTTTAAAGGGGTTGAGACA+TGG | + | chr3_2:86279310-86279329 | Msa0433730:CDS | 40.0% |
| TCCTGCCTAAGATAGTTGTA+AGG | + | chr3_2:86279546-86279565 | Msa0433730:intron | 40.0% | |
| ! | TCGCAACTTTGGGAAAGTTA+GGG | - | chr3_2:86279591-86279610 | None:intergenic | 40.0% |
| ! | ATCGCAACTTTGGGAAAGTT+AGG | - | chr3_2:86279592-86279611 | None:intergenic | 40.0% |
| ! | CTTTCCCAAAGTTGCGATTT+TGG | + | chr3_2:86279594-86279613 | Msa0433730:intron | 40.0% |
| TGCCACATGTGCAAAACTTT+GGG | - | chr3_2:86279654-86279673 | None:intergenic | 40.0% | |
| ! | TTTTGCACATGTGGCAGTTT+TGG | + | chr3_2:86279658-86279677 | Msa0433730:intron | 40.0% |
| ! | CTTTCACGAAGTTGCGATTT+TGG | - | chr3_2:86279830-86279849 | None:intergenic | 40.0% |
| GCAACTTCGTGAAAGTTAGT+GGG | + | chr3_2:86279835-86279854 | Msa0433730:intron | 40.0% | |
| ! | ATTAATTCTAGGAGGCTGCT+AGG | + | chr3_2:86280262-86280281 | Msa0433730:intron | 40.0% |
| GCTAGGAGACAAGAAACAAT+TGG | + | chr3_2:86280279-86280298 | Msa0433730:CDS | 40.0% | |
| GAATACAAACCTCTTCCAAC+TGG | + | chr3_2:86280420-86280439 | Msa0433730:intron | 40.0% | |
| !!! | TCTTTTTCAGTGGCACCATT+TGG | - | chr3_2:86280447-86280466 | None:intergenic | 40.0% |
| !!! | ATGTACCTCGTCTTTTTCAG+TGG | - | chr3_2:86280457-86280476 | None:intergenic | 40.0% |
| CATTGCAGTACAGATTGCTA+AGG | + | chr3_2:86280669-86280688 | Msa0433730:intron | 40.0% | |
| CTACATGTTCAACAGCGTAT+TGG | + | chr3_2:86280802-86280821 | Msa0433730:CDS | 40.0% | |
| GTGCAGATTCCAATCTCATT+TGG | + | chr3_2:86280953-86280972 | Msa0433730:intron | 40.0% | |
| GCAGATTCCAATCTCATTTG+GGG | + | chr3_2:86280955-86280974 | Msa0433730:intron | 40.0% | |
| CAGTTTACCCCAAATGAGAT+TGG | - | chr3_2:86280965-86280984 | None:intergenic | 40.0% | |
| AGGCAACTGCATTATTCACA+GGG | + | chr3_2:86280991-86281010 | Msa0433730:intron | 40.0% | |
| TTCTTTCTCTTGGTCACCTA+TGG | - | chr3_2:86281033-86281052 | None:intergenic | 40.0% | |
| ! | CTATTGTGTTGTTGCCTTAC+TGG | + | chr3_2:86281076-86281095 | Msa0433730:CDS | 40.0% |
| GCACGACATTGAATCCAATT+AGG | - | chr3_2:86281258-86281277 | None:intergenic | 40.0% | |
| TTCCACAACACACATAGATG+CGG | - | chr3_2:86281324-86281343 | None:intergenic | 40.0% | |
| CTACATGCTGAAACGATTTC+CGG | + | chr3_2:86281346-86281365 | Msa0433730:intron | 40.0% | |
| AAACGATTTCCGGTTCCTTA+TGG | + | chr3_2:86281356-86281375 | Msa0433730:intron | 40.0% | |
| !! | GAACTTCTAGCTTACTCCTT+CGG | + | chr3_2:86281392-86281411 | Msa0433730:intron | 40.0% |
| TGATAGATGCTCTCCCAAAT+AGG | - | chr3_2:86281603-86281622 | None:intergenic | 40.0% | |
| CTTGTCTTCAAACTTAGTCG+AGG | + | chr3_2:86281741-86281760 | Msa0433730:intron | 40.0% | |
| GTCAAAATCACTCCATGACT+AGG | - | chr3_2:86282025-86282044 | None:intergenic | 40.0% | |
| !! | TTTGGAAGCGTTGGTGGTAT+TGG | + | chr3_2:86278385-86278404 | Msa0433730:CDS | 45.0% |
| GTTTGCTTCAGGTATGGTCA+TGG | + | chr3_2:86278989-86279008 | Msa0433730:intron | 45.0% | |
| AGGTAGGATGCCTCAGTTTA+AGG | - | chr3_2:86279043-86279062 | None:intergenic | 45.0% | |
| ! | TAAACTGAGGCATCCTACCT+TGG | + | chr3_2:86279043-86279062 | Msa0433730:CDS | 45.0% |
| AGGGGTTGAGACATGGAATA+AGG | + | chr3_2:86279317-86279336 | Msa0433730:CDS | 45.0% | |
| TCGATCAACTCAAAGACACG+TGG | - | chr3_2:86279458-86279477 | None:intergenic | 45.0% | |
| GCCTTACAACTATCTTAGGC+AGG | - | chr3_2:86279550-86279569 | None:intergenic | 45.0% | |
| ! | GCAACTTTGGGAAAGTTAGG+GGG | - | chr3_2:86279589-86279608 | None:intergenic | 45.0% |
| ! | CGCAACTTTGGGAAAGTTAG+GGG | - | chr3_2:86279590-86279609 | None:intergenic | 45.0% |
| GGGACCAAAATCGCAACTTT+GGG | - | chr3_2:86279601-86279620 | None:intergenic | 45.0% | |
| CCACATGTGCAAAACTTTGG+GGG | - | chr3_2:86279652-86279671 | None:intergenic | 45.0% | |
| GCCACATGTGCAAAACTTTG+GGG | - | chr3_2:86279653-86279672 | None:intergenic | 45.0% | |
| CTGCCACATGTGCAAAACTT+TGG | - | chr3_2:86279655-86279674 | None:intergenic | 45.0% | |
| CAGTTGCAAAACTTAGAGGG+CGG | + | chr3_2:86279778-86279797 | Msa0433730:intron | 45.0% | |
| CGCAACTTCGTGAAAGTTAG+TGG | + | chr3_2:86279834-86279853 | Msa0433730:intron | 45.0% | |
| AATGTGCACTGGAAGGAGTT+TGG | + | chr3_2:86280619-86280638 | Msa0433730:intron | 45.0% | |
| GAGGCAACTGCATTATTCAC+AGG | + | chr3_2:86280990-86281009 | Msa0433730:intron | 45.0% | |
| GGTCATGATGAACGTTGTTG+TGG | - | chr3_2:86281297-86281316 | None:intergenic | 45.0% | |
| AACACACATAGATGCGGAGA+AGG | - | chr3_2:86281318-86281337 | None:intergenic | 45.0% | |
| GAACACGAACCATAAGGAAC+CGG | - | chr3_2:86281368-86281387 | None:intergenic | 45.0% | |
| TCCTTATGGTTCGTGTTCAC+AGG | + | chr3_2:86281370-86281389 | Msa0433730:intron | 45.0% | |
| TCCTGTGAACACGAACCATA+AGG | - | chr3_2:86281374-86281393 | None:intergenic | 45.0% | |
| AGCTCTTTACTTCATCCTGG+TGG | + | chr3_2:86281528-86281547 | Msa0433730:intron | 45.0% | |
| ! | GCTTTTATTGCAGCCTTGGT+TGG | + | chr3_2:86281550-86281569 | Msa0433730:CDS | 45.0% |
| CGGAGTTGGCATTGTAAACA+TGG | + | chr3_2:86281881-86281900 | Msa0433730:three_prime_UTR | 45.0% | |
| TGTATGGGTCGTAGCACATT+TGG | + | chr3_2:86281952-86281971 | Msa0433730:three_prime_UTR | 45.0% | |
| GTATGGGTCGTAGCACATTT+GGG | + | chr3_2:86281953-86281972 | Msa0433730:three_prime_UTR | 45.0% | |
| !! | AATATTAGATAAAATATTTA+CGG | + | chr3_2:86278960-86278979 | Msa0433730:intron | 5.0% |
| !!! | ACTTTTTAAAAAAAAAAATT+GGG | - | chr3_2:86279938-86279957 | None:intergenic | 5.0% |
| !!! | AACTTTTTAAAAAAAAAAAT+TGG | - | chr3_2:86279939-86279958 | None:intergenic | 5.0% |
| ! | GGTTTTTGTGGAGCAGCGTT+TGG | + | chr3_2:86278367-86278386 | Msa0433730:CDS | 50.0% |
| !! | CACTATTGCAGTGCTGGTTG+AGG | - | chr3_2:86278791-86278810 | None:intergenic | 50.0% |
| TATGGTCATGGGTGTGTCTC+TGG | + | chr3_2:86279001-86279020 | Msa0433730:CDS | 50.0% | |
| CGGGACCAAAATCGCAACTT+TGG | - | chr3_2:86279602-86279621 | None:intergenic | 50.0% | |
| !! | GTTGCGATTTTGGTCCCGTA+AGG | + | chr3_2:86279604-86279623 | Msa0433730:intron | 50.0% |
| ! | CATGTGCAAAACTTTGGGGG+CGG | - | chr3_2:86279649-86279668 | None:intergenic | 50.0% |
| ! | CCCCCAAAGTTTTGCACATG+TGG | + | chr3_2:86279649-86279668 | Msa0433730:intron | 50.0% |
| !! | ACCGGGTCAAAATTGGCCTT+GGG | - | chr3_2:86279686-86279705 | None:intergenic | 50.0% |
| AGCGTAGACCGGGTCAAAAT+TGG | - | chr3_2:86279693-86279712 | None:intergenic | 50.0% | |
| AACACGTGGCACCTCACTTA+GGG | - | chr3_2:86279725-86279744 | None:intergenic | 50.0% | |
| TAACACGTGGCACCTCACTT+AGG | - | chr3_2:86279726-86279745 | None:intergenic | 50.0% | |
| CCATTTGGTCCAGTTGGAAG+AGG | - | chr3_2:86280432-86280451 | None:intergenic | 50.0% | |
| CCTCTTCCAACTGGACCAAA+TGG | + | chr3_2:86280429-86280448 | Msa0433730:intron | 50.0% | |
| !! | TGGTGCCACTGAAAAAGACG+AGG | + | chr3_2:86280449-86280468 | Msa0433730:intron | 50.0% |
| ! | TGTGTTGTTGCCTTACTGGC+TGG | + | chr3_2:86281080-86281099 | Msa0433730:CDS | 50.0% |
| ! | ACTAGGAGGCGGATTCATGT+TGG | + | chr3_2:86281124-86281143 | Msa0433730:CDS | 50.0% |
| !!! | CATGTTGGCTCCGCTTTTTC+TGG | + | chr3_2:86281139-86281158 | Msa0433730:CDS | 50.0% |
| ACTCCGAGCTCCAGAAAAAG+CGG | - | chr3_2:86281152-86281171 | None:intergenic | 50.0% | |
| CTCCGCATCTATGTGTGTTG+TGG | + | chr3_2:86281319-86281338 | Msa0433730:intron | 50.0% | |
| CGCAGCTCTTTACTTCATCC+TGG | + | chr3_2:86281525-86281544 | Msa0433730:intron | 50.0% | |
| AGGCTGCAATAAAAGCCACC+AGG | - | chr3_2:86281546-86281565 | None:intergenic | 50.0% | |
| ! | GGTGGCTTTTATTGCAGCCT+TGG | + | chr3_2:86281546-86281565 | Msa0433730:CDS | 50.0% |
| !! | GGAAGCGTTGGTGGTATTGG+TGG | + | chr3_2:86278388-86278407 | Msa0433730:CDS | 55.0% |
| !! | AGCGTTGGTGGTATTGGTGG+TGG | + | chr3_2:86278391-86278410 | Msa0433730:CDS | 55.0% |
| !! | GTTGGTGGTATTGGTGGTGG+TGG | + | chr3_2:86278394-86278413 | Msa0433730:CDS | 55.0% |
| !! | CGGGTCAAAATTGGCCTTGG+GGG | - | chr3_2:86279684-86279703 | None:intergenic | 55.0% |
| !! | CCGGGTCAAAATTGGCCTTG+GGG | - | chr3_2:86279685-86279704 | None:intergenic | 55.0% |
| !! | CCCCAAGGCCAATTTTGACC+CGG | + | chr3_2:86279682-86279701 | Msa0433730:intron | 55.0% |
| ! | GACCGGGTCAAAATTGGCCT+TGG | - | chr3_2:86279687-86279706 | None:intergenic | 55.0% |
| GTGGCACCATTTGGTCCAGT+TGG | - | chr3_2:86280438-86280457 | None:intergenic | 55.0% | |
| !! | TGGCGTACTCGGTGGATTGT+TGG | + | chr3_2:86281100-86281119 | Msa0433730:CDS | 55.0% |
| !! | GGCGTACTCGGTGGATTGTT+GGG | + | chr3_2:86281101-86281120 | Msa0433730:CDS | 55.0% |
| !! | CTCGGTGGATTGTTGGGACT+AGG | + | chr3_2:86281107-86281126 | Msa0433730:CDS | 55.0% |
| !! | GGTGGATTGTTGGGACTAGG+AGG | + | chr3_2:86281110-86281129 | Msa0433730:CDS | 55.0% |
| GGATTGTTGGGACTAGGAGG+CGG | + | chr3_2:86281113-86281132 | Msa0433730:CDS | 55.0% | |
| !!! | GCTCCGCTTTTTCTGGAGCT+CGG | + | chr3_2:86281146-86281165 | Msa0433730:CDS | 55.0% |
| GGATTCAATGTCGTGCACGC+AGG | + | chr3_2:86281262-86281281 | Msa0433730:intron | 55.0% | |
| ! | GGAGCAGCGTTTGGAAGCGT+TGG | + | chr3_2:86278376-86278395 | Msa0433730:CDS | 60.0% |
| !! | GCAGCGTTTGGAAGCGTTGG+TGG | + | chr3_2:86278379-86278398 | Msa0433730:CDS | 60.0% |
| !! | TGTGGCAGTTTTGGCCCCCA+AGG | + | chr3_2:86279667-86279686 | Msa0433730:intron | 60.0% |
| CTGACGTGGCACCCTAAGTG+AGG | + | chr3_2:86279711-86279730 | Msa0433730:intron | 60.0% | |
| ! | GCCTTACTGGCTGGCGTACT+CGG | + | chr3_2:86281089-86281108 | Msa0433730:CDS | 60.0% |
| ACCGAGTACGCCAGCCAGTA+AGG | - | chr3_2:86281093-86281112 | None:intergenic | 60.0% | |
| ! | TTACTGGCTGGCGTACTCGG+TGG | + | chr3_2:86281092-86281111 | Msa0433730:CDS | 60.0% |
| TGACCCGGTCTACGCTGACG+TGG | + | chr3_2:86279697-86279716 | Msa0433730:intron | 65.0% | |
| GTGCCACGTCAGCGTAGACC+GGG | - | chr3_2:86279703-86279722 | None:intergenic | 65.0% | |
| ! | GGTGCCACGTCAGCGTAGAC+CGG | - | chr3_2:86279704-86279723 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 86278328 | 86282154 | 86278328 | ID=Msa0433730;Name=Msa0433730 |
| chr3_2 | mRNA | 86278328 | 86282154 | 86278328 | ID=Msa0433730-mRNA-1;Parent=Msa0433730;Name=Msa0433730-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0.42|0.62|1|0.85|0.87|8|304|267 |
| chr3_2 | exon | 86278328 | 86278484 | 86278328 | ID=Msa0433730-mRNA-1:exon:24918;Parent=Msa0433730-mRNA-1 |
| chr3_2 | exon | 86279000 | 86279200 | 86279000 | ID=Msa0433730-mRNA-1:exon:24919;Parent=Msa0433730-mRNA-1 |
| chr3_2 | exon | 86279292 | 86279356 | 86279292 | ID=Msa0433730-mRNA-1:exon:24920;Parent=Msa0433730-mRNA-1 |
| chr3_2 | exon | 86280273 | 86280300 | 86280273 | ID=Msa0433730-mRNA-1:exon:24921;Parent=Msa0433730-mRNA-1 |
| chr3_2 | exon | 86280789 | 86280842 | 86280789 | ID=Msa0433730-mRNA-1:exon:24922;Parent=Msa0433730-mRNA-1 |
| chr3_2 | exon | 86281012 | 86281198 | 86281012 | ID=Msa0433730-mRNA-1:exon:24923;Parent=Msa0433730-mRNA-1 |
| chr3_2 | exon | 86281530 | 86281670 | 86281530 | ID=Msa0433730-mRNA-1:exon:24924;Parent=Msa0433730-mRNA-1 |
| chr3_2 | exon | 86281880 | 86282154 | 86281880 | ID=Msa0433730-mRNA-1:exon:24925;Parent=Msa0433730-mRNA-1 |
| chr3_2 | CDS | 86278328 | 86278484 | 86278328 | ID=Msa0433730-mRNA-1:cds;Parent=Msa0433730-mRNA-1 |
| chr3_2 | CDS | 86279000 | 86279200 | 86279000 | ID=Msa0433730-mRNA-1:cds;Parent=Msa0433730-mRNA-1 |
| chr3_2 | CDS | 86279292 | 86279356 | 86279292 | ID=Msa0433730-mRNA-1:cds;Parent=Msa0433730-mRNA-1 |
| chr3_2 | CDS | 86280273 | 86280300 | 86280273 | ID=Msa0433730-mRNA-1:cds;Parent=Msa0433730-mRNA-1 |
| chr3_2 | CDS | 86280789 | 86280842 | 86280789 | ID=Msa0433730-mRNA-1:cds;Parent=Msa0433730-mRNA-1 |
| chr3_2 | CDS | 86281012 | 86281198 | 86281012 | ID=Msa0433730-mRNA-1:cds;Parent=Msa0433730-mRNA-1 |
| chr3_2 | CDS | 86281530 | 86281641 | 86281530 | ID=Msa0433730-mRNA-1:cds;Parent=Msa0433730-mRNA-1 |
| chr3_2 | three_prime_UTR | 86281642 | 86281670 | 86281642 | ID=Msa0433730-mRNA-1:three_prime_utr;Parent=Msa0433730-mRNA-1 |
| chr3_2 | three_prime_UTR | 86281880 | 86282154 | 86281880 | ID=Msa0433730-mRNA-1:three_prime_utr;Parent=Msa0433730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
