AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0898750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0898750 MtrunA17_Chr6g0484451 94.656 524 19 2 1 516 1 523 0.0 879
Msa0898750 MtrunA17_Chr8g0391071 56.863 612 198 15 1 596 1 562 0.0 582
Msa0898750 MtrunA17_Chr4g0000281 38.558 319 171 9 293 595 115 424 5.68e-58 200
Msa0898750 MtrunA17_Chr6g0484461 96.386 83 3 0 515 597 8 90 1.71e-49 166
Msa0898750 MtrunA17_Chr7g0217181 29.912 341 204 10 284 596 412 745 1.43e-33 136
Msa0898750 MtrunA17_Chr5g0417111 29.846 325 188 11 298 595 597 908 1.87e-28 121
Msa0898750 MtrunA17_Chr8g0361681 29.880 251 161 5 358 595 587 835 1.25e-24 108
Msa0898750 MtrunA17_Chr8g0361691 28.671 143 92 4 358 496 11 147 3.07e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0898750 AT1G73850.2 48.933 656 255 20 1 597 1 635 1.07e-162 479
Msa0898750 AT1G73850.1 48.933 656 255 20 1 597 1 635 1.07e-162 479
Msa0898750 AT3G20260.1 38.700 323 175 8 293 595 117 436 1.34e-55 194
Msa0898750 AT5G39785.1 31.274 259 155 6 358 595 349 605 2.84e-27 117
Msa0898750 AT5G39785.3 31.274 259 155 6 358 595 349 605 2.84e-27 117
Msa0898750 AT5G39785.5 31.274 259 155 6 358 595 349 605 2.84e-27 117
Msa0898750 AT5G39785.2 31.179 263 151 7 358 595 349 606 5.20e-26 113
Msa0898750 AT1G69610.3 29.260 311 188 8 294 578 270 574 2.28e-24 108
Msa0898750 AT5G39785.4 28.322 286 153 7 358 595 349 630 2.95e-24 107
Msa0898750 AT1G69610.1 29.260 311 188 8 294 578 314 618 3.78e-24 107
Msa0898750 AT1G69610.2 29.260 311 188 8 294 578 315 619 4.07e-24 107
Msa0898750 AT3G01175.1 26.087 391 226 12 246 596 209 576 1.01e-17 87.4

Find 105 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGCGTAAGATTCCCATTT+TGG 0.147178 6_1:-93278119 None:intergenic
TCAATTATTTGTAGAGATTC+TGG 0.189000 6_1:+93278065 Msa0898750:CDS
TAACATGGGAAGCACTTAAT+TGG 0.198782 6_1:+93279028 Msa0898750:CDS
GAGTAGCATATGGAATATTT+TGG 0.205134 6_1:+93281161 Msa0898750:three_prime_UTR
CTTGTACCTTCCTTTGTCTT+TGG 0.209501 6_1:-93281257 None:intergenic
GTAATTGTACCTCGATATTC+AGG 0.210210 6_1:-93279240 None:intergenic
CAAGAAGAAGTTGTCCAAAA+TGG 0.218903 6_1:+93278105 Msa0898750:CDS
AATAAAGGAATGGTAGGTTT+AGG 0.238272 6_1:+93281418 Msa0898750:three_prime_UTR
TTAGTAGCTGATATAGTTTA+TGG 0.264952 6_1:+93277081 Msa0898750:CDS
GGTCCTTTCCGTATTCATTA+AGG 0.267289 6_1:-93281451 None:intergenic
AAATATGGAATTAAAGAAAA+TGG 0.288943 6_1:+93281103 Msa0898750:three_prime_UTR
AGCTTCATTTCTTGTGATAA+TGG 0.291025 6_1:+93280092 Msa0898750:CDS
ATAAAGGAATGGTAGGTTTA+GGG 0.306498 6_1:+93281419 Msa0898750:three_prime_UTR
GATGATCAGAAGGAGAATAT+TGG 0.307291 6_1:+93280048 Msa0898750:CDS
TATGTTTCACTTTGATTTGT+AGG 0.317438 6_1:-93281134 None:intergenic
GTAGCTCCAAGGTCAATTTC+AGG 0.324497 6_1:+93278904 Msa0898750:CDS
CACTATTGGCTCAACATCTA+AGG 0.332326 6_1:+93278022 Msa0898750:CDS
GCAGAAGAAGATAAAGATTA+AGG 0.334262 6_1:+93280756 Msa0898750:intron
GCACCCTCTAATTCACAATA+TGG 0.341978 6_1:-93278985 None:intergenic
ATGATCAGAAGGAGAATATT+GGG 0.345161 6_1:+93280049 Msa0898750:CDS
GAGAATGAACCTTATGAGTT+TGG 0.345523 6_1:+93279159 Msa0898750:CDS
ATCAACATTTGAAGCTCGTT+TGG 0.363092 6_1:-93279070 None:intergenic
TCTCTCTTTCAAGAACTAAC+AGG 0.364210 6_1:-93281472 None:intergenic
CTTGAAGGAGGAAGAAGAAA+TGG 0.370058 6_1:+93280816 Msa0898750:CDS
ATATGCATTCATGCATATAA+AGG 0.372778 6_1:+93281057 Msa0898750:three_prime_UTR
GCACAAAAGCTTCATGAAAC+TGG 0.382594 6_1:+93278188 Msa0898750:CDS
TAAAGTAGAGCACACAATAA+AGG 0.384818 6_1:+93281403 Msa0898750:three_prime_UTR
AATTGTTGTGCAATTGTTGC+TGG 0.391890 6_1:-93279102 None:intergenic
AAAGATGATGAAGAGATATA+TGG 0.394408 6_1:+93277990 Msa0898750:CDS
TGTGATTGGTCCTACACAAT+TGG 0.408052 6_1:+93277938 Msa0898750:CDS
AAGAAATGTCATTTCTAGAA+AGG 0.415445 6_1:+93278159 Msa0898750:CDS
GTCTCAAAATCTGAAACAAT+TGG 0.415879 6_1:-93277276 None:intergenic
TTGTATAGGTTAACTGTGAT+AGG 0.416462 6_1:-93277390 None:intergenic
TATGGTGATACAACCACTAT+TGG 0.420091 6_1:+93278008 Msa0898750:CDS
TTGAAGAAGAAAAGAGAAAG+AGG 0.420122 6_1:-93276799 None:intergenic
AGTAAAGTGAGAGTCATAGA+TGG 0.438505 6_1:+93280937 Msa0898750:CDS
TTCATGGAAAGATGGGTAAA+GGG 0.439288 6_1:+93281193 Msa0898750:three_prime_UTR
TTTAAAAGACGGATTAATGT+TGG 0.441489 6_1:-93280219 None:intergenic
TTTAAAGAAAGTTAATCAAA+AGG 0.445739 6_1:+93280236 Msa0898750:CDS
AAGAAGAAGTTGTCCAAAAT+GGG 0.445917 6_1:+93278106 Msa0898750:CDS
TTTCTTGTGATAATGGAAGA+TGG 0.449843 6_1:+93280099 Msa0898750:CDS
TACAACAAGTCCTAGCTAGA+TGG 0.458968 6_1:-93281521 None:intergenic
ATTCTATTCCAATTGAAAAG+AGG 0.460919 6_1:+93277355 Msa0898750:CDS
ACTTTCAAAAGATTTACTCT+TGG 0.461765 6_1:+93281588 Msa0898750:three_prime_UTR
ATGTTTCACTTTGATTTGTA+GGG 0.464629 6_1:-93281133 None:intergenic
CTTAGATGTTGAGCCAATAG+TGG 0.464943 6_1:-93278021 None:intergenic
GTATGAAATTCATGGAAAGA+TGG 0.469748 6_1:+93281185 Msa0898750:three_prime_UTR
TCAGGGACTAGGAGCAACTT+TGG 0.470020 6_1:-93279222 None:intergenic
CTCATTCTAGCATAAATCTC+TGG 0.472752 6_1:-93279189 None:intergenic
TTATTTCTCTCCAATTGTGT+AGG 0.473744 6_1:-93277948 None:intergenic
CATCTAAGGACTCTTCTGAT+TGG 0.477906 6_1:+93278036 Msa0898750:CDS
CTTGAGGAAGAGAAACTTGA+AGG 0.482470 6_1:+93280801 Msa0898750:CDS
ATTCATGGAAAGATGGGTAA+AGG 0.485708 6_1:+93281192 Msa0898750:three_prime_UTR
TATGAAATTCATGGAAAGAT+GGG 0.485834 6_1:+93281186 Msa0898750:three_prime_UTR
AACATATGTGGAGTAGCATA+TGG 0.488821 6_1:+93281151 Msa0898750:three_prime_UTR
CAATCCATATTGTGAATTAG+AGG 0.497184 6_1:+93278981 Msa0898750:CDS
TTGCACAAATTTGCTTAACA+TGG 0.498853 6_1:+93279013 Msa0898750:CDS
TAGATTTAAAAGTGGTGTCA+AGG 0.506032 6_1:+93280857 Msa0898750:CDS
AAAGATGGGTAAAGGGGAAG+AGG 0.506487 6_1:+93281200 Msa0898750:three_prime_UTR
GCTTAGTGGATGAAGTACTT+TGG 0.507883 6_1:+93276667 None:intergenic
ATTCTCCCTGAAATTGACCT+TGG 0.509048 6_1:-93278910 None:intergenic
GGTCTCCTACCAAACTCATA+AGG 0.512862 6_1:-93279168 None:intergenic
GATTATAGGGTTTATCTACA+AGG 0.513523 6_1:+93281321 Msa0898750:three_prime_UTR
GATTAACTTTCTTTAAAAGA+CGG 0.520863 6_1:-93280230 None:intergenic
AATATATCAACCATCTAGCT+AGG 0.522471 6_1:+93281511 Msa0898750:three_prime_UTR
GTAGCTACTCTTTATTCCAA+AGG 0.527051 6_1:+93276852 Msa0898750:CDS
TCGTAGAAATCAAAGAGGCT+TGG 0.527566 6_1:+93280191 Msa0898750:CDS
TTATGCTAGAATGAGACATA+TGG 0.527586 6_1:+93279197 Msa0898750:CDS
ATGAACCTTATGAGTTTGGT+AGG 0.530017 6_1:+93279163 Msa0898750:CDS
CGAGCTTCAAATGTTGATGT+TGG 0.530856 6_1:+93279075 Msa0898750:CDS
TAGCTCCAAGGTCAATTTCA+GGG 0.532390 6_1:+93278905 Msa0898750:CDS
GTAGCTGATATAGTTTATGG+TGG 0.535251 6_1:+93277084 Msa0898750:CDS
AGATTTAAAAGTGGTGTCAA+GGG 0.538293 6_1:+93280858 Msa0898750:CDS
TCATGGAAAGATGGGTAAAG+GGG 0.546887 6_1:+93281194 Msa0898750:three_prime_UTR
ATTATAGGGTTTATCTACAA+GGG 0.563418 6_1:+93281322 Msa0898750:three_prime_UTR
AGAATCAGATGATGATCAGA+AGG 0.565291 6_1:+93280038 Msa0898750:intron
ATAGTAACAATAAGTCTCAA+AGG 0.565342 6_1:+93277127 Msa0898750:CDS
AAATCAAAGTGAAACATATG+TGG 0.565389 6_1:+93281139 Msa0898750:three_prime_UTR
TTTCCTTAATGAATACGGAA+AGG 0.568122 6_1:+93281448 Msa0898750:three_prime_UTR
GCACACAATAAAGGAATGGT+AGG 0.573149 6_1:+93281412 Msa0898750:three_prime_UTR
AATCCATATTGTGAATTAGA+GGG 0.576076 6_1:+93278982 Msa0898750:CDS
AGAGCTTCTTCTTTAGAACA+TGG 0.576720 6_1:-93276731 None:intergenic
AACATTCATGAATTTCCTCA+AGG 0.579977 6_1:+93280128 Msa0898750:CDS
GGAATTAAAGAAAATGGAGA+AGG 0.581111 6_1:+93281109 Msa0898750:three_prime_UTR
TAATTGTACCTCGATATTCA+GGG 0.581514 6_1:-93279239 None:intergenic
AACTGTGATAGGAGGAGAAG+TGG 0.582918 6_1:-93277379 None:intergenic
GAAAGACCAAAGACAAAGGA+AGG 0.584518 6_1:+93281251 Msa0898750:three_prime_UTR
GGCATTGATAGATTTAAAAG+TGG 0.584753 6_1:+93280849 Msa0898750:CDS
TGCACAAATTTGCTTAACAT+GGG 0.586140 6_1:+93279014 Msa0898750:CDS
GTTTCTCTTTATCAGCCTTG+AGG 0.587313 6_1:-93280143 None:intergenic
TACCTCGATATTCAGGGACT+AGG 0.588940 6_1:-93279233 None:intergenic
TATAGGTTAACTGTGATAGG+AGG 0.592053 6_1:-93277387 None:intergenic
TGAATGAAAATCAATTACAT+TGG 0.596670 6_1:+93280899 Msa0898750:CDS
TAGAGCACACAATAAAGGAA+TGG 0.601855 6_1:+93281408 Msa0898750:three_prime_UTR
TTCTACGAAAGTAAGATGCA+AGG 0.609967 6_1:-93280176 None:intergenic
TACTTTCGTAGAAATCAAAG+AGG 0.610424 6_1:+93280186 Msa0898750:CDS
AATTAATATTGCTTCATGAG+TGG 0.611639 6_1:+93281027 Msa0898750:three_prime_UTR
GACGCTCACACAAATGCTTG+AGG 0.613037 6_1:+93280785 Msa0898750:CDS
GATCTATCAAAGTAGCTCCA+AGG 0.637964 6_1:+93278893 Msa0898750:CDS
TCTTCAATGAAGCTATCTTG+AGG 0.638095 6_1:-93277198 None:intergenic
AAGTGAAAGACCAAAGACAA+AGG 0.666104 6_1:+93281247 Msa0898750:three_prime_UTR
TTGAGCAAGAGTGAAGCACA+TGG 0.667633 6_1:+93281347 Msa0898750:three_prime_UTR
CTCCTAGTCCCTGAATATCG+AGG 0.670680 6_1:+93279231 Msa0898750:CDS
TAAGATGCAAGGATCTGACA+TGG 0.678566 6_1:-93280165 None:intergenic
GAGGAAGAGAAACTTGAAGG+AGG 0.683685 6_1:+93280804 Msa0898750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTCAAATATATTTTTATT+TGG + chr6_1:93278587-93278606 Msa0898750:intron 10.0%
!! TATAATTATTATTAATGGTT+GGG - chr6_1:93279343-93279362 None:intergenic 10.0%
!! TCAAGTATAATTATTATTAA+TGG - chr6_1:93279348-93279367 None:intergenic 10.0%
!!! AATAATATTTTAATAGAAGT+TGG - chr6_1:93279474-93279493 None:intergenic 10.0%
!!! TTTTATAATTTAAAATATCG+AGG + chr6_1:93280499-93280518 Msa0898750:intron 10.0%
!! TTATTTATTTGTATACATAT+TGG + chr6_1:93280664-93280683 Msa0898750:intron 10.0%
!! ATAATAAGAATAATAACCTT+TGG - chr6_1:93276871-93276890 None:intergenic 15.0%
!! AAATATCAGAAAATTAAGAA+AGG - chr6_1:93278225-93278244 None:intergenic 15.0%
!! GAAGAAATAATATTATAATG+TGG - chr6_1:93278572-93278591 None:intergenic 15.0%
!! GTATAATTATTATTAATGGT+TGG - chr6_1:93279344-93279363 None:intergenic 15.0%
!! TTTAAAGAAAGTTAATCAAA+AGG + chr6_1:93280236-93280255 Msa0898750:CDS 15.0%
!! TATACAAGTACTATATAATT+AGG - chr6_1:93280268-93280287 None:intergenic 15.0%
!!! AATCATATTAATTTTCTCTT+TGG + chr6_1:93280287-93280306 Msa0898750:intron 15.0%
!! ATAAAATGAAATTTATGATG+TGG - chr6_1:93280319-93280338 None:intergenic 15.0%
!!! TAACATACTTTTTGTAAATA+TGG + chr6_1:93281088-93281107 Msa0898750:three_prime_UTR 15.0%
!! AAATATGGAATTAAAGAAAA+TGG + chr6_1:93281103-93281122 Msa0898750:three_prime_UTR 15.0%
!!! TTTTTTTTCCTTAATGAATA+CGG + chr6_1:93281443-93281462 Msa0898750:three_prime_UTR 15.0%
!!! ATAATTGTACTTTTGTAAAT+TGG - chr6_1:93281553-93281572 None:intergenic 15.0%
!! CTTTATTGTAAATATAACGA+TGG - chr6_1:93276942-93276961 None:intergenic 20.0%
!!! ATGTGTCAATTTTATTTATG+TGG + chr6_1:93277623-93277642 Msa0898750:intron 20.0%
!!! TGATTTGACAAAATTGTTTT+TGG + chr6_1:93277725-93277744 Msa0898750:intron 20.0%
!! GCAGAAAAATATATTGATAT+TGG + chr6_1:93277858-93277877 Msa0898750:intron 20.0%
!! AAAAATTGTAACTAAGTAGT+TGG + chr6_1:93278684-93278703 Msa0898750:intron 20.0%
!! AAGAGAGATAGTATATTTAA+TGG + chr6_1:93279387-93279406 Msa0898750:intron 20.0%
!!! TATTTTAATAGAAGTTGGAA+GGG - chr6_1:93279469-93279488 None:intergenic 20.0%
!!! ATATTTTAATAGAAGTTGGA+AGG - chr6_1:93279470-93279489 None:intergenic 20.0%
!! AGCATTATTAAACAATTTGT+AGG + chr6_1:93279818-93279837 Msa0898750:intron 20.0%
!! GCATTATTAAACAATTTGTA+GGG + chr6_1:93279819-93279838 Msa0898750:intron 20.0%
!! CATTATTAAACAATTTGTAG+GGG + chr6_1:93279820-93279839 Msa0898750:intron 20.0%
!!! GATTAACTTTCTTTAAAAGA+CGG - chr6_1:93280233-93280252 None:intergenic 20.0%
!! TGAATGAAAATCAATTACAT+TGG + chr6_1:93280899-93280918 Msa0898750:CDS 20.0%
!!! TTTACATAAACCTTTTTTGT+GGG - chr6_1:93281009-93281028 None:intergenic 20.0%
!!! ATTTACATAAACCTTTTTTG+TGG - chr6_1:93281010-93281029 None:intergenic 20.0%
!!! CTTTAGCTTTTTTGATTATA+GGG + chr6_1:93281308-93281327 Msa0898750:three_prime_UTR 20.0%
! TTAGTAGCTGATATAGTTTA+TGG + chr6_1:93277081-93277100 Msa0898750:CDS 25.0%
! ATAGTAACAATAAGTCTCAA+AGG + chr6_1:93277127-93277146 Msa0898750:CDS 25.0%
! ATTCTATTCCAATTGAAAAG+AGG + chr6_1:93277355-93277374 Msa0898750:CDS 25.0%
! AAAGATGATGAAGAGATATA+TGG + chr6_1:93277990-93278009 Msa0898750:CDS 25.0%
! TCAATTATTTGTAGAGATTC+TGG + chr6_1:93278065-93278084 Msa0898750:CDS 25.0%
!! AAGAAATGTCATTTCTAGAA+AGG + chr6_1:93278159-93278178 Msa0898750:CDS 25.0%
! CTAACGTTCAAGATATATTA+TGG + chr6_1:93278317-93278336 Msa0898750:intron 25.0%
! AATCCATATTGTGAATTAGA+GGG + chr6_1:93278982-93279001 Msa0898750:CDS 25.0%
!!! TAATGGTTTTGATTTTTGAC+TGG + chr6_1:93279404-93279423 Msa0898750:intron 25.0%
! AAAACTGTAGATAATTTCAC+AGG + chr6_1:93279429-93279448 Msa0898750:intron 25.0%
!!! ATTTTAATAGAAGTTGGAAG+GGG - chr6_1:93279468-93279487 None:intergenic 25.0%
! TAATAATGCTTCACACTAAT+GGG - chr6_1:93279808-93279827 None:intergenic 25.0%
! TTAATAATGCTTCACACTAA+TGG - chr6_1:93279809-93279828 None:intergenic 25.0%
!!! TTTAAAAGACGGATTAATGT+TGG - chr6_1:93280222-93280241 None:intergenic 25.0%
! GTGTAGACAAAATATATGTT+AGG - chr6_1:93280351-93280370 None:intergenic 25.0%
!! TTCTAATGTGGACTTTTTAA+AGG + chr6_1:93280385-93280404 Msa0898750:intron 25.0%
!!! TGGACTTTTTAAAGGAAATT+CGG + chr6_1:93280393-93280412 Msa0898750:intron 25.0%
! TACCATCATACTATGTTTAA+TGG + chr6_1:93280689-93280708 Msa0898750:intron 25.0%
! ATCCATTAAACATAGTATGA+TGG - chr6_1:93280694-93280713 None:intergenic 25.0%
! AATTAATATTGCTTCATGAG+TGG + chr6_1:93281027-93281046 Msa0898750:three_prime_UTR 25.0%
! ATATGCATTCATGCATATAA+AGG + chr6_1:93281057-93281076 Msa0898750:three_prime_UTR 25.0%
!!! ATGTTTCACTTTGATTTGTA+GGG - chr6_1:93281136-93281155 None:intergenic 25.0%
!!! TATGTTTCACTTTGATTTGT+AGG - chr6_1:93281137-93281156 None:intergenic 25.0%
! AAATCAAAGTGAAACATATG+TGG + chr6_1:93281139-93281158 Msa0898750:three_prime_UTR 25.0%
!! AGTAGCATATGGAATATTTT+GGG + chr6_1:93281162-93281181 Msa0898750:three_prime_UTR 25.0%
! TATGAAATTCATGGAAAGAT+GGG + chr6_1:93281186-93281205 Msa0898750:three_prime_UTR 25.0%
!!! GCTTTAGCTTTTTTGATTAT+AGG + chr6_1:93281307-93281326 Msa0898750:three_prime_UTR 25.0%
! ATTATAGGGTTTATCTACAA+GGG + chr6_1:93281322-93281341 Msa0898750:three_prime_UTR 25.0%
! ACTTTCAAAAGATTTACTCT+TGG + chr6_1:93281588-93281607 Msa0898750:three_prime_UTR 25.0%
TTGAAGAAGAAAAGAGAAAG+AGG - chr6_1:93276802-93276821 None:intergenic 30.0%
! GTCTCAAAATCTGAAACAAT+TGG - chr6_1:93277279-93277298 None:intergenic 30.0%
TTGTATAGGTTAACTGTGAT+AGG - chr6_1:93277393-93277412 None:intergenic 30.0%
!! CTAAGTCATCACTTTTGTAT+AGG - chr6_1:93277407-93277426 None:intergenic 30.0%
GTTTGTGTATGTACTTGTAT+CGG + chr6_1:93277675-93277694 Msa0898750:intron 30.0%
AGTGTTTCATAGATGCTAAA+TGG + chr6_1:93277820-93277839 Msa0898750:intron 30.0%
! TTATTTCTCTCCAATTGTGT+AGG - chr6_1:93277951-93277970 None:intergenic 30.0%
AAGAAGAAGTTGTCCAAAAT+GGG + chr6_1:93278106-93278125 Msa0898750:CDS 30.0%
CAATCCATATTGTGAATTAG+AGG + chr6_1:93278981-93279000 Msa0898750:CDS 30.0%
! TTGCACAAATTTGCTTAACA+TGG + chr6_1:93279013-93279032 Msa0898750:CDS 30.0%
! TGCACAAATTTGCTTAACAT+GGG + chr6_1:93279014-93279033 Msa0898750:CDS 30.0%
TTATGCTAGAATGAGACATA+TGG + chr6_1:93279197-93279216 Msa0898750:CDS 30.0%
TAATTGTACCTCGATATTCA+GGG - chr6_1:93279242-93279261 None:intergenic 30.0%
CAATTACTTAGCAATATGCA+TGG + chr6_1:93279256-93279275 Msa0898750:intron 30.0%
! TTTTAATAGAAGTTGGAAGG+GGG - chr6_1:93279467-93279486 None:intergenic 30.0%
! GTTTTGCAAAATTGCAATTG+TGG + chr6_1:93279733-93279752 Msa0898750:intron 30.0%
TTTATATATTGCCAACCCAT+TGG + chr6_1:93279764-93279783 Msa0898750:intron 30.0%
AATAATGCTTCACACTAATG+GGG - chr6_1:93279807-93279826 None:intergenic 30.0%
ATGATCAGAAGGAGAATATT+GGG + chr6_1:93280049-93280068 Msa0898750:CDS 30.0%
AGCTTCATTTCTTGTGATAA+TGG + chr6_1:93280092-93280111 Msa0898750:CDS 30.0%
!! TTTCTTGTGATAATGGAAGA+TGG + chr6_1:93280099-93280118 Msa0898750:CDS 30.0%
AACATTCATGAATTTCCTCA+AGG + chr6_1:93280128-93280147 Msa0898750:CDS 30.0%
TACTTTCGTAGAAATCAAAG+AGG + chr6_1:93280186-93280205 Msa0898750:CDS 30.0%
TTGTCTACACTCAACATATT+AGG + chr6_1:93280361-93280380 Msa0898750:intron 30.0%
AACATATTAGGCTTCTAATG+TGG + chr6_1:93280373-93280392 Msa0898750:intron 30.0%
! ATAGATAGAGCTGCTTTAAT+AGG - chr6_1:93280615-93280634 None:intergenic 30.0%
GCAGAAGAAGATAAAGATTA+AGG + chr6_1:93280756-93280775 Msa0898750:intron 30.0%
! AGAAGAAATGGAGATTTTGA+TGG + chr6_1:93280828-93280847 Msa0898750:CDS 30.0%
!! GGCATTGATAGATTTAAAAG+TGG + chr6_1:93280849-93280868 Msa0898750:CDS 30.0%
! TAGATTTAAAAGTGGTGTCA+AGG + chr6_1:93280857-93280876 Msa0898750:CDS 30.0%
! AGATTTAAAAGTGGTGTCAA+GGG + chr6_1:93280858-93280877 Msa0898750:CDS 30.0%
GGAATTAAAGAAAATGGAGA+AGG + chr6_1:93281109-93281128 Msa0898750:three_prime_UTR 30.0%
! GAGTAGCATATGGAATATTT+TGG + chr6_1:93281161-93281180 Msa0898750:three_prime_UTR 30.0%
! GTAGCATATGGAATATTTTG+GGG + chr6_1:93281163-93281182 Msa0898750:three_prime_UTR 30.0%
!!! ATTTTGGGGTATGAAATTCA+TGG + chr6_1:93281177-93281196 Msa0898750:three_prime_UTR 30.0%
GTATGAAATTCATGGAAAGA+TGG + chr6_1:93281185-93281204 Msa0898750:three_prime_UTR 30.0%
GATTATAGGGTTTATCTACA+AGG + chr6_1:93281321-93281340 Msa0898750:three_prime_UTR 30.0%
TAAAGTAGAGCACACAATAA+AGG + chr6_1:93281403-93281422 Msa0898750:three_prime_UTR 30.0%
AATAAAGGAATGGTAGGTTT+AGG + chr6_1:93281418-93281437 Msa0898750:three_prime_UTR 30.0%
ATAAAGGAATGGTAGGTTTA+GGG + chr6_1:93281419-93281438 Msa0898750:three_prime_UTR 30.0%
TTTCCTTAATGAATACGGAA+AGG + chr6_1:93281448-93281467 Msa0898750:three_prime_UTR 30.0%
AATATATCAACCATCTAGCT+AGG + chr6_1:93281511-93281530 Msa0898750:three_prime_UTR 30.0%
!! AGAGCTTCTTCTTTAGAACA+TGG - chr6_1:93276734-93276753 None:intergenic 35.0%
GTAGCTACTCTTTATTCCAA+AGG + chr6_1:93276852-93276871 Msa0898750:CDS 35.0%
GTAGCTGATATAGTTTATGG+TGG + chr6_1:93277084-93277103 Msa0898750:CDS 35.0%
TCTTCAATGAAGCTATCTTG+AGG - chr6_1:93277201-93277220 None:intergenic 35.0%
TATAGGTTAACTGTGATAGG+AGG - chr6_1:93277390-93277409 None:intergenic 35.0%
GAGAGTGACAAAAACTATGA+TGG + chr6_1:93277429-93277448 Msa0898750:CDS 35.0%
GTATCTGTGTTTCATTGTCT+CGG + chr6_1:93277774-93277793 Msa0898750:intron 35.0%
!!! GATGAGAGTGTTTTTGTGAT+TGG + chr6_1:93277924-93277943 Msa0898750:CDS 35.0%
TATGGTGATACAACCACTAT+TGG + chr6_1:93278008-93278027 Msa0898750:CDS 35.0%
CAAGAAGAAGTTGTCCAAAA+TGG + chr6_1:93278105-93278124 Msa0898750:CDS 35.0%
TTAATAAGCTGAATCTCTCG+CGG + chr6_1:93278256-93278275 Msa0898750:intron 35.0%
GAGAATTTGACTAGAGATTG+AGG - chr6_1:93278282-93278301 None:intergenic 35.0%
! TTAATCCAACGACTGAGTTT+TGG + chr6_1:93278347-93278366 Msa0898750:intron 35.0%
! TGTCGACAAGTTGAACATTA+TGG - chr6_1:93278425-93278444 None:intergenic 35.0%
TTGTCTCTCCAATGAAACTT+CGG + chr6_1:93278459-93278478 Msa0898750:intron 35.0%
TTCAACAACCGAAGTTTCAT+TGG - chr6_1:93278470-93278489 None:intergenic 35.0%
!!! TTGAGAGTGTTTTATCTCGA+CGG + chr6_1:93278502-93278521 Msa0898750:intron 35.0%
TCACTTAAGAACGAAACTTC+AGG + chr6_1:93278727-93278746 Msa0898750:intron 35.0%
CACTTAAGAACGAAACTTCA+GGG + chr6_1:93278728-93278747 Msa0898750:intron 35.0%
ACTTAAGAACGAAACTTCAG+GGG + chr6_1:93278729-93278748 Msa0898750:intron 35.0%
!! TAACATGGGAAGCACTTAAT+TGG + chr6_1:93279028-93279047 Msa0898750:CDS 35.0%
! ATCAACATTTGAAGCTCGTT+TGG - chr6_1:93279073-93279092 None:intergenic 35.0%
AATTGTTGTGCAATTGTTGC+TGG - chr6_1:93279105-93279124 None:intergenic 35.0%
GAGAATGAACCTTATGAGTT+TGG + chr6_1:93279159-93279178 Msa0898750:CDS 35.0%
ATGAACCTTATGAGTTTGGT+AGG + chr6_1:93279163-93279182 Msa0898750:CDS 35.0%
CTCATTCTAGCATAAATCTC+TGG - chr6_1:93279192-93279211 None:intergenic 35.0%
GTAATTGTACCTCGATATTC+AGG - chr6_1:93279243-93279262 None:intergenic 35.0%
GAAAAACTAGTACCTTCCAA+CGG + chr6_1:93279278-93279297 Msa0898750:intron 35.0%
AAAAACTAGTACCTTCCAAC+GGG + chr6_1:93279279-93279298 Msa0898750:intron 35.0%
ATTAATGGTTGGGATTTCAC+TGG - chr6_1:93279333-93279352 None:intergenic 35.0%
ACTGTAGATAATTTCACAGG+AGG + chr6_1:93279432-93279451 Msa0898750:intron 35.0%
CTGTAGATAATTTCACAGGA+GGG + chr6_1:93279433-93279452 Msa0898750:intron 35.0%
AGAATCAGATGATGATCAGA+AGG + chr6_1:93280038-93280057 Msa0898750:intron 35.0%
GATGATCAGAAGGAGAATAT+TGG + chr6_1:93280048-93280067 Msa0898750:CDS 35.0%
TTCTACGAAAGTAAGATGCA+AGG - chr6_1:93280179-93280198 None:intergenic 35.0%
AGATTCCACATTCATGTAGT+CGG + chr6_1:93280424-93280443 Msa0898750:intron 35.0%
ACTGTCTGATCTTGATTGAA+CGG + chr6_1:93280532-93280551 Msa0898750:intron 35.0%
AATAGGATCAGACTTCTTTG+CGG - chr6_1:93280598-93280617 None:intergenic 35.0%
AGTAAAGTGAGAGTCATAGA+TGG + chr6_1:93280937-93280956 Msa0898750:CDS 35.0%
! CAATGTGATGGGAAAAAAAG+TGG - chr6_1:93280985-93281004 None:intergenic 35.0%
! TTTTTGTGGGTCAATGTGAT+GGG - chr6_1:93280996-93281015 None:intergenic 35.0%
!!! TTTTTTGTGGGTCAATGTGA+TGG - chr6_1:93280997-93281016 None:intergenic 35.0%
ATCACATTGACCCACAAAAA+AGG + chr6_1:93280996-93281015 Msa0898750:exon 35.0%
AACATATGTGGAGTAGCATA+TGG + chr6_1:93281151-93281170 Msa0898750:three_prime_UTR 35.0%
ATTCATGGAAAGATGGGTAA+AGG + chr6_1:93281192-93281211 Msa0898750:three_prime_UTR 35.0%
TTCATGGAAAGATGGGTAAA+GGG + chr6_1:93281193-93281212 Msa0898750:three_prime_UTR 35.0%
AAGTGAAAGACCAAAGACAA+AGG + chr6_1:93281247-93281266 Msa0898750:three_prime_UTR 35.0%
TAGAGCACACAATAAAGGAA+TGG + chr6_1:93281408-93281427 Msa0898750:three_prime_UTR 35.0%
TCTCTCTTTCAAGAACTAAC+AGG - chr6_1:93281475-93281494 None:intergenic 35.0%
! GAAGTGGTCCTCTTTTCAAT+TGG - chr6_1:93277366-93277385 None:intergenic 40.0%
GTTTGTGTCAGTGTTGTGTT+CGG + chr6_1:93277651-93277670 Msa0898750:intron 40.0%
! TGTGATTGGTCCTACACAAT+TGG + chr6_1:93277938-93277957 Msa0898750:CDS 40.0%
CTTAGATGTTGAGCCAATAG+TGG - chr6_1:93278024-93278043 None:intergenic 40.0%
!! CACTATTGGCTCAACATCTA+AGG + chr6_1:93278022-93278041 Msa0898750:CDS 40.0%
CATCTAAGGACTCTTCTGAT+TGG + chr6_1:93278036-93278055 Msa0898750:CDS 40.0%
! ACTGCGTAAGATTCCCATTT+TGG - chr6_1:93278122-93278141 None:intergenic 40.0%
GCACAAAAGCTTCATGAAAC+TGG + chr6_1:93278188-93278207 Msa0898750:CDS 40.0%
GATCTATCAAAGTAGCTCCA+AGG + chr6_1:93278893-93278912 Msa0898750:CDS 40.0%
TAGCTCCAAGGTCAATTTCA+GGG + chr6_1:93278905-93278924 Msa0898750:CDS 40.0%
ATTCTCCCTGAAATTGACCT+TGG - chr6_1:93278913-93278932 None:intergenic 40.0%
GCACCCTCTAATTCACAATA+TGG - chr6_1:93278988-93279007 None:intergenic 40.0%
CGAGCTTCAAATGTTGATGT+TGG + chr6_1:93279075-93279094 Msa0898750:CDS 40.0%
! ATATTGCCAACCCATTGGTT+AGG + chr6_1:93279769-93279788 Msa0898750:intron 40.0%
! TATTGCCAACCCATTGGTTA+GGG + chr6_1:93279770-93279789 Msa0898750:intron 40.0%
GTTTCTCTTTATCAGCCTTG+AGG - chr6_1:93280146-93280165 None:intergenic 40.0%
TAAGATGCAAGGATCTGACA+TGG - chr6_1:93280168-93280187 None:intergenic 40.0%
TCGTAGAAATCAAAGAGGCT+TGG + chr6_1:93280191-93280210 Msa0898750:CDS 40.0%
ATACTCCGACTACATGAATG+TGG - chr6_1:93280432-93280451 None:intergenic 40.0%
CTTGAGGAAGAGAAACTTGA+AGG + chr6_1:93280801-93280820 Msa0898750:CDS 40.0%
CTTGAAGGAGGAAGAAGAAA+TGG + chr6_1:93280816-93280835 Msa0898750:CDS 40.0%
TGATGGGAAAAAAAGTGGAG+TGG - chr6_1:93280980-93280999 None:intergenic 40.0%
TCATGGAAAGATGGGTAAAG+GGG + chr6_1:93281194-93281213 Msa0898750:three_prime_UTR 40.0%
GAAAGACCAAAGACAAAGGA+AGG + chr6_1:93281251-93281270 Msa0898750:three_prime_UTR 40.0%
CTTGTACCTTCCTTTGTCTT+TGG - chr6_1:93281260-93281279 None:intergenic 40.0%
GCACACAATAAAGGAATGGT+AGG + chr6_1:93281412-93281431 Msa0898750:three_prime_UTR 40.0%
GGTCCTTTCCGTATTCATTA+AGG - chr6_1:93281454-93281473 None:intergenic 40.0%
TACAACAAGTCCTAGCTAGA+TGG - chr6_1:93281524-93281543 None:intergenic 40.0%
AACTGTGATAGGAGGAGAAG+TGG - chr6_1:93277382-93277401 None:intergenic 45.0%
TATTGCCTCTCCAGTTTCTC+CGG - chr6_1:93278373-93278392 None:intergenic 45.0%
!! ACTAAGTAGTTGGCTTGAGC+TGG + chr6_1:93278694-93278713 Msa0898750:intron 45.0%
GTAGCTCCAAGGTCAATTTC+AGG + chr6_1:93278904-93278923 Msa0898750:CDS 45.0%
GGTCTCCTACCAAACTCATA+AGG - chr6_1:93279171-93279190 None:intergenic 45.0%
TACCTCGATATTCAGGGACT+AGG - chr6_1:93279236-93279255 None:intergenic 45.0%
ATGCATGGACCCTAACCAAT+GGG - chr6_1:93279782-93279801 None:intergenic 45.0%
TATGCATGGACCCTAACCAA+TGG - chr6_1:93279783-93279802 None:intergenic 45.0%
GAGGAAGAGAAACTTGAAGG+AGG + chr6_1:93280804-93280823 Msa0898750:CDS 45.0%
AAAGATGGGTAAAGGGGAAG+AGG + chr6_1:93281200-93281219 Msa0898750:three_prime_UTR 45.0%
TTGAGCAAGAGTGAAGCACA+TGG + chr6_1:93281347-93281366 Msa0898750:three_prime_UTR 45.0%
!! AAAAAAATTAGTTATTATTA+AGG + chr6_1:93278768-93278787 Msa0898750:intron 5.0%
!! TAAAATATTATTGTAAAAAT+TGG + chr6_1:93279482-93279501 Msa0898750:intron 5.0%
!! TCCAACGACTGAGTTTTGGC+CGG + chr6_1:93278351-93278370 Msa0898750:intron 50.0%
!! TGAGTTTTGGCCGGAGAAAC+TGG + chr6_1:93278360-93278379 Msa0898750:intron 50.0%
TCAGGGACTAGGAGCAACTT+TGG - chr6_1:93279225-93279244 None:intergenic 50.0%
CTCCTAGTCCCTGAATATCG+AGG + chr6_1:93279231-93279250 Msa0898750:CDS 50.0%
CTAGTACCTTCCAACGGGAA+TGG + chr6_1:93279284-93279303 Msa0898750:intron 50.0%
AATGGATCCTCTCCAGTGAC+TGG + chr6_1:93279302-93279321 Msa0898750:intron 50.0%
ATGGACCCTAACCAATGGGT+TGG - chr6_1:93279778-93279797 None:intergenic 50.0%
CACACTAATGGGGCTATGCA+TGG - chr6_1:93279797-93279816 None:intergenic 50.0%
GACGCTCACACAAATGCTTG+AGG + chr6_1:93280785-93280804 Msa0898750:CDS 50.0%
TCCGGCCAAAACTCAGTCGT+TGG - chr6_1:93278355-93278374 None:intergenic 55.0%
TTTGGCCGGAGAAACTGGAG+AGG + chr6_1:93278365-93278384 Msa0898750:intron 55.0%
GAGGATCCATTCCCGTTGGA+AGG - chr6_1:93279293-93279312 None:intergenic 55.0%
TGGAGAGGATCCATTCCCGT+TGG - chr6_1:93279297-93279316 None:intergenic 55.0%
GATCCTCTCCAGTGACTGGA+GGG + chr6_1:93279306-93279325 Msa0898750:intron 55.0%
GGATCCTCTCCAGTGACTGG+AGG + chr6_1:93279305-93279324 Msa0898750:intron 60.0%
TCACTGGACCCTCCAGTCAC+TGG - chr6_1:93279317-93279336 None:intergenic 60.0%
GGACCCTCCAGTCACTGGAG+AGG - chr6_1:93279312-93279331 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 93276674 93281618 93276674 ID=Msa0898750;Name=Msa0898750
chr6_1 mRNA 93276674 93281618 93276674 ID=Msa0898750-mRNA-1;Parent=Msa0898750;Name=Msa0898750-mRNA-1;_AED=0.09;_eAED=0.09;_QI=54|1|1|1|1|1|6|613|597
chr6_1 exon 93276674 93276873 93276674 ID=Msa0898750-mRNA-1:exon:15775;Parent=Msa0898750-mRNA-1
chr6_1 exon 93276984 93277450 93276984 ID=Msa0898750-mRNA-1:exon:15776;Parent=Msa0898750-mRNA-1
chr6_1 exon 93277862 93278209 93277862 ID=Msa0898750-mRNA-1:exon:15777;Parent=Msa0898750-mRNA-1
chr6_1 exon 93278884 93279252 93278884 ID=Msa0898750-mRNA-1:exon:15778;Parent=Msa0898750-mRNA-1
chr6_1 exon 93280040 93280257 93280040 ID=Msa0898750-mRNA-1:exon:15779;Parent=Msa0898750-mRNA-1
chr6_1 exon 93280760 93281618 93280760 ID=Msa0898750-mRNA-1:exon:15780;Parent=Msa0898750-mRNA-1
chr6_1 five_prime_UTR 93276674 93276727 93276674 ID=Msa0898750-mRNA-1:five_prime_utr;Parent=Msa0898750-mRNA-1
chr6_1 CDS 93276728 93276873 93276728 ID=Msa0898750-mRNA-1:cds;Parent=Msa0898750-mRNA-1
chr6_1 CDS 93276984 93277450 93276984 ID=Msa0898750-mRNA-1:cds;Parent=Msa0898750-mRNA-1
chr6_1 CDS 93277862 93278209 93277862 ID=Msa0898750-mRNA-1:cds;Parent=Msa0898750-mRNA-1
chr6_1 CDS 93278884 93279252 93278884 ID=Msa0898750-mRNA-1:cds;Parent=Msa0898750-mRNA-1
chr6_1 CDS 93280040 93280257 93280040 ID=Msa0898750-mRNA-1:cds;Parent=Msa0898750-mRNA-1
chr6_1 CDS 93280760 93281005 93280760 ID=Msa0898750-mRNA-1:cds;Parent=Msa0898750-mRNA-1
chr6_1 three_prime_UTR 93281006 93281618 93281006 ID=Msa0898750-mRNA-1:three_prime_utr;Parent=Msa0898750-mRNA-1
Gene Sequence

>Msa0898750

ATGCCATGTTCTAAAGAAGAAGCTCTTATTAGACTCTTCTACAATTCTTCAAGCTCTTTCAAACTTCTCTTCCTCTTTCTCTTTTCTTCTTCAACTTTGCTTCTCAAAATCTTAAACTTCATTAGTAGCTACTCTTTATTCCAAAGTGATCAACAATATGAATATGTTTCATCTGAAGAAGAAGAAGAAGAAGAAGAAATTCAAGAAAGTTATTGTTATGAAGATTCTATTGAGAAAGATCATTTAGTAGCTGATATAGTTTATGGTGGAGAAGCTCTTGTATTTCTTCATAGTAACAATAAGTCTCAAAGGAATCATTCTTTTTCTTTTGAAGAAGAAGAAGAAGAAGAGTTTATAACACCTCAAGATAGCTTCATTGAAGAGTTTTCTTCAGAAGAAAAATTTTCAAGTGAAAGTTTGCATGTTCATCAGAAGTCACCAATTGTTTCAGATTTTGAGACAGAAACAAATGAAACAGAAATTCAAACAGAAGAAGAAGATGCTGATTCTGTTCAAGATTCTATTCCAATTGAAAAGAGGACCACTTCTCCTCCTATCACAGTTAACCTATACAAAAGTGATGACTTAGTAGAGAGTGACAAAAACTATGATGAAAAATATATTGATATTGGAGTTATAAAAAATGAGAAAGTGCAAGAAGAAAAAATTACAAGAGATGAGAGTGTTTTTGTGATTGGTCCTACACAATTGGAGAGAAATAAGAAGTTGATTATTGAAGAAAAAGATGATGAAGAGATATATGGTGATACAACCACTATTGGCTCAACATCTAAGGACTCTTCTGATTGGAGAAGTTCAATTATTTGTAGAGATTCTGGAACTGATGATTCATCATCAAGAAGAAGTTGTCCAAAATGGGAATCTTACGCAGTTTTTCAAAAATATGATGAAGAAATGTCATTTCTAGAAAGGATTAGTGCACAAAAGCTTCATGAAACTGAATCATTGAGATCTATCAAAGTAGCTCCAAGGTCAATTTCAGGGAGAATTGTGTACAAACTTTCAAGTATGAACAAAAAATCAGAAGATATAAGTCACAATCCATATTGTGAATTAGAGGGTGCATATGTTGCACAAATTTGCTTAACATGGGAAGCACTTAATTGGAACTACAAGAATTTTCAAACCAAACGAGCTTCAAATGTTGATGTTGGTTGTCCAGCAACAATTGCACAACAATTTCAACAATTTCAAGTTTTGTTGCAAAGATATGTAGAGAATGAACCTTATGAGTTTGGTAGGAGACCAGAGATTTATGCTAGAATGAGACATATGGCACCAAAGTTGCTCCTAGTCCCTGAATATCGAGAATCAGATGATGATCAGAAGGAGAATATTGGGTTTAACACTAAAATATCATCAGCTTCATTTCTTGTGATAATGGAAGATGGAATCAGAACATTCATGAATTTCCTCAAGGCTGATAAAGAGAAACCATGTCAGATCCTTGCATCTTACTTTCGTAGAAATCAAAGAGGCTTGGTTGATCCAACATTAATCCGTCTTTTAAAGAAAGTTAATCAAAAGAAGAAGATAAAGATTAAGGATCTTCGACGCTCACACAAATGCTTGAGGAAGAGAAACTTGAAGGAGGAAGAAGAAATGGAGATTTTGATGGCATTGATAGATTTAAAAGTGGTGTCAAGGGTTTTAAGAATGAGTGACATGAATGAAAATCAATTACATTGGTGTGAAGAGAAAAATAGTAAAGTGAGAGTCATAGATGGAAAACTACAAAGAGATTCCACTCCACTTTTTTTCCCATCACATTGA

Protein sequence

>Msa0898750

MPCSKEEALIRLFYNSSSSFKLLFLFLFSSSTLLLKILNFISSYSLFQSDQQYEYVSSEEEEEEEEIQESYCYEDSIEKDHLVADIVYGGEALVFLHSNNKSQRNHSFSFEEEEEEEFITPQDSFIEEFSSEEKFSSESLHVHQKSPIVSDFETETNETEIQTEEEDADSVQDSIPIEKRTTSPPITVNLYKSDDLVESDKNYDEKYIDIGVIKNEKVQEEKITRDESVFVIGPTQLERNKKLIIEEKDDEEIYGDTTTIGSTSKDSSDWRSSIICRDSGTDDSSSRRSCPKWESYAVFQKYDEEMSFLERISAQKLHETESLRSIKVAPRSISGRIVYKLSSMNKKSEDISHNPYCELEGAYVAQICLTWEALNWNYKNFQTKRASNVDVGCPATIAQQFQQFQVLLQRYVENEPYEFGRRPEIYARMRHMAPKLLLVPEYRESDDDQKENIGFNTKISSASFLVIMEDGIRTFMNFLKADKEKPCQILASYFRRNQRGLVDPTLIRLLKKVNQKKKIKIKDLRRSHKCLRKRNLKEEEEMEILMALIDLKVVSRVLRMSDMNENQLHWCEEKNSKVRVIDGKLQRDSTPLFFPSH*