AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0928130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0928130 MtrunA17_Chr6g0484451 94.656 524 19 2 1 516 1 523 0.0 879
Msa0928130 MtrunA17_Chr8g0391071 56.863 612 198 15 1 596 1 562 0.0 582
Msa0928130 MtrunA17_Chr4g0000281 38.558 319 171 9 293 595 115 424 5.68e-58 200
Msa0928130 MtrunA17_Chr6g0484461 96.386 83 3 0 515 597 8 90 1.71e-49 166
Msa0928130 MtrunA17_Chr7g0217181 29.912 341 204 10 284 596 412 745 1.43e-33 136
Msa0928130 MtrunA17_Chr5g0417111 29.846 325 188 11 298 595 597 908 1.87e-28 121
Msa0928130 MtrunA17_Chr8g0361681 29.880 251 161 5 358 595 587 835 1.25e-24 108
Msa0928130 MtrunA17_Chr8g0361691 28.671 143 92 4 358 496 11 147 3.07e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0928130 AT1G73850.2 48.933 656 255 20 1 597 1 635 1.07e-162 479
Msa0928130 AT1G73850.1 48.933 656 255 20 1 597 1 635 1.07e-162 479
Msa0928130 AT3G20260.1 38.700 323 175 8 293 595 117 436 1.34e-55 194
Msa0928130 AT5G39785.1 31.274 259 155 6 358 595 349 605 2.84e-27 117
Msa0928130 AT5G39785.3 31.274 259 155 6 358 595 349 605 2.84e-27 117
Msa0928130 AT5G39785.5 31.274 259 155 6 358 595 349 605 2.84e-27 117
Msa0928130 AT5G39785.2 31.179 263 151 7 358 595 349 606 5.20e-26 113
Msa0928130 AT1G69610.3 29.260 311 188 8 294 578 270 574 2.28e-24 108
Msa0928130 AT5G39785.4 28.322 286 153 7 358 595 349 630 2.95e-24 107
Msa0928130 AT1G69610.1 29.260 311 188 8 294 578 314 618 3.78e-24 107
Msa0928130 AT1G69610.2 29.260 311 188 8 294 578 315 619 4.07e-24 107
Msa0928130 AT3G01175.1 26.087 391 226 12 246 596 209 576 1.01e-17 87.4

Find 105 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGCGTAAGATTCCCATTT+TGG 0.147178 6_2:+73024542 None:intergenic
TCAATTATTTGTAGAGATTC+TGG 0.189000 6_2:-73024596 Msa0928130:CDS
TAACATGGGAAGCACTTAAT+TGG 0.198782 6_2:-73023633 Msa0928130:CDS
GAGTAGCATATGGAATATTT+TGG 0.205134 6_2:-73021500 Msa0928130:three_prime_UTR
CTTGTACCTTCCTTTGTCTT+TGG 0.209501 6_2:+73021404 None:intergenic
GTAATTGTACCTCGATATTC+AGG 0.210210 6_2:+73023421 None:intergenic
CAAGAAGAAGTTGTCCAAAA+TGG 0.218903 6_2:-73024556 Msa0928130:CDS
AATAAAGGAATGGTAGGTTT+AGG 0.238272 6_2:-73021243 Msa0928130:three_prime_UTR
TTAGTAGCTGATATAGTTTA+TGG 0.264952 6_2:-73025580 Msa0928130:CDS
GGTCCTTTCCGTATTCATTA+AGG 0.267289 6_2:+73021210 None:intergenic
AAATATGGAATTAAAGAAAA+TGG 0.288943 6_2:-73021558 Msa0928130:three_prime_UTR
AGCTTCATTTCTTGTGATAA+TGG 0.291025 6_2:-73022569 Msa0928130:CDS
ATAAAGGAATGGTAGGTTTA+GGG 0.306498 6_2:-73021242 Msa0928130:three_prime_UTR
GATGATCAGAAGGAGAATAT+TGG 0.307291 6_2:-73022613 Msa0928130:CDS
TATGTTTCACTTTGATTTGT+AGG 0.317438 6_2:+73021527 None:intergenic
GTAGCTCCAAGGTCAATTTC+AGG 0.324497 6_2:-73023757 Msa0928130:CDS
CACTATTGGCTCAACATCTA+AGG 0.332326 6_2:-73024639 Msa0928130:CDS
GCAGAAGAAGATAAAGATTA+AGG 0.334262 6_2:-73021905 Msa0928130:intron
GCACCCTCTAATTCACAATA+TGG 0.341978 6_2:+73023676 None:intergenic
ATGATCAGAAGGAGAATATT+GGG 0.345161 6_2:-73022612 Msa0928130:CDS
GAGAATGAACCTTATGAGTT+TGG 0.345523 6_2:-73023502 Msa0928130:CDS
ATCAACATTTGAAGCTCGTT+TGG 0.363092 6_2:+73023591 None:intergenic
TCTCTCTTTCAAGAACTAAC+AGG 0.364210 6_2:+73021189 None:intergenic
CTTGAAGGAGGAAGAAGAAA+TGG 0.370058 6_2:-73021845 Msa0928130:CDS
ATATGCATTCATGCATATAA+AGG 0.372778 6_2:-73021604 Msa0928130:three_prime_UTR
GCACAAAAGCTTCATGAAAC+TGG 0.382594 6_2:-73024473 Msa0928130:intron
TAAAGTAGAGCACACAATAA+AGG 0.384818 6_2:-73021258 Msa0928130:three_prime_UTR
AATTGTTGTGCAATTGTTGC+TGG 0.391890 6_2:+73023559 None:intergenic
AAAGATGATGAAGAGATATA+TGG 0.394408 6_2:-73024671 Msa0928130:CDS
TGTGATTGGTCCTACACAAT+TGG 0.408052 6_2:-73024723 Msa0928130:CDS
AAGAAATGTCATTTCTAGAA+AGG 0.415445 6_2:-73024502 Msa0928130:CDS
GTCTCAAAATCTGAAACAAT+TGG 0.415879 6_2:+73025385 None:intergenic
TTGTATAGGTTAACTGTGAT+AGG 0.416462 6_2:+73025271 None:intergenic
TATGGTGATACAACCACTAT+TGG 0.420091 6_2:-73024653 Msa0928130:CDS
TTGAAGAAGAAAAGAGAAAG+AGG 0.420122 6_2:+73025862 None:intergenic
AGTAAAGTGAGAGTCATAGA+TGG 0.438505 6_2:-73021724 Msa0928130:CDS
TTCATGGAAAGATGGGTAAA+GGG 0.439288 6_2:-73021468 Msa0928130:three_prime_UTR
TTTAAAAGACGGATTAATGT+TGG 0.441489 6_2:+73022442 None:intergenic
TTTAAAGAAAGTTAATCAAA+AGG 0.445739 6_2:-73022425 Msa0928130:intron
AAGAAGAAGTTGTCCAAAAT+GGG 0.445917 6_2:-73024555 Msa0928130:CDS
TTTCTTGTGATAATGGAAGA+TGG 0.449843 6_2:-73022562 Msa0928130:CDS
TACAACAAGTCCTAGCTAGA+TGG 0.458968 6_2:+73021140 None:intergenic
ATTCTATTCCAATTGAAAAG+AGG 0.460919 6_2:-73025306 Msa0928130:CDS
ACTTTCAAAAGATTTACTCT+TGG 0.461765 6_2:-73021073 Msa0928130:three_prime_UTR
ATGTTTCACTTTGATTTGTA+GGG 0.464629 6_2:+73021528 None:intergenic
CTTAGATGTTGAGCCAATAG+TGG 0.464943 6_2:+73024640 None:intergenic
GTATGAAATTCATGGAAAGA+TGG 0.469748 6_2:-73021476 Msa0928130:three_prime_UTR
TCAGGGACTAGGAGCAACTT+TGG 0.470020 6_2:+73023439 None:intergenic
CTCATTCTAGCATAAATCTC+TGG 0.472752 6_2:+73023472 None:intergenic
TTATTTCTCTCCAATTGTGT+AGG 0.473744 6_2:+73024713 None:intergenic
CATCTAAGGACTCTTCTGAT+TGG 0.477906 6_2:-73024625 Msa0928130:CDS
CTTGAGGAAGAGAAACTTGA+AGG 0.482470 6_2:-73021860 Msa0928130:CDS
ATTCATGGAAAGATGGGTAA+AGG 0.485708 6_2:-73021469 Msa0928130:three_prime_UTR
TATGAAATTCATGGAAAGAT+GGG 0.485834 6_2:-73021475 Msa0928130:three_prime_UTR
AACATATGTGGAGTAGCATA+TGG 0.488821 6_2:-73021510 Msa0928130:three_prime_UTR
CAATCCATATTGTGAATTAG+AGG 0.497184 6_2:-73023680 Msa0928130:CDS
TTGCACAAATTTGCTTAACA+TGG 0.498853 6_2:-73023648 Msa0928130:CDS
TAGATTTAAAAGTGGTGTCA+AGG 0.506032 6_2:-73021804 Msa0928130:CDS
AAAGATGGGTAAAGGGGAAG+AGG 0.506487 6_2:-73021461 Msa0928130:three_prime_UTR
GCTTAGTGGATGAAGTACTT+TGG 0.507883 6_2:-73025994 None:intergenic
ATTCTCCCTGAAATTGACCT+TGG 0.509048 6_2:+73023751 None:intergenic
GGTCTCCTACCAAACTCATA+AGG 0.512862 6_2:+73023493 None:intergenic
GATTATAGGGTTTATCTACA+AGG 0.513523 6_2:-73021340 Msa0928130:three_prime_UTR
GATTAACTTTCTTTAAAAGA+CGG 0.520863 6_2:+73022431 None:intergenic
AATATATCAACCATCTAGCT+AGG 0.522471 6_2:-73021150 Msa0928130:three_prime_UTR
GTAGCTACTCTTTATTCCAA+AGG 0.527051 6_2:-73025809 Msa0928130:intron
TCGTAGAAATCAAAGAGGCT+TGG 0.527566 6_2:-73022470 Msa0928130:CDS
TTATGCTAGAATGAGACATA+TGG 0.527586 6_2:-73023464 Msa0928130:CDS
ATGAACCTTATGAGTTTGGT+AGG 0.530017 6_2:-73023498 Msa0928130:CDS
CGAGCTTCAAATGTTGATGT+TGG 0.530856 6_2:-73023586 Msa0928130:CDS
TAGCTCCAAGGTCAATTTCA+GGG 0.532390 6_2:-73023756 Msa0928130:CDS
GTAGCTGATATAGTTTATGG+TGG 0.535251 6_2:-73025577 Msa0928130:CDS
AGATTTAAAAGTGGTGTCAA+GGG 0.538293 6_2:-73021803 Msa0928130:CDS
TCATGGAAAGATGGGTAAAG+GGG 0.546887 6_2:-73021467 Msa0928130:three_prime_UTR
ATTATAGGGTTTATCTACAA+GGG 0.563418 6_2:-73021339 Msa0928130:three_prime_UTR
AGAATCAGATGATGATCAGA+AGG 0.565291 6_2:-73022623 Msa0928130:CDS
ATAGTAACAATAAGTCTCAA+AGG 0.565342 6_2:-73025534 Msa0928130:CDS
AAATCAAAGTGAAACATATG+TGG 0.565389 6_2:-73021522 Msa0928130:three_prime_UTR
TTTCCTTAATGAATACGGAA+AGG 0.568122 6_2:-73021213 Msa0928130:three_prime_UTR
GCACACAATAAAGGAATGGT+AGG 0.573149 6_2:-73021249 Msa0928130:three_prime_UTR
AATCCATATTGTGAATTAGA+GGG 0.576076 6_2:-73023679 Msa0928130:CDS
AGAGCTTCTTCTTTAGAACA+TGG 0.576720 6_2:+73025930 None:intergenic
AACATTCATGAATTTCCTCA+AGG 0.579977 6_2:-73022533 Msa0928130:CDS
GGAATTAAAGAAAATGGAGA+AGG 0.581111 6_2:-73021552 Msa0928130:three_prime_UTR
TAATTGTACCTCGATATTCA+GGG 0.581514 6_2:+73023422 None:intergenic
AACTGTGATAGGAGGAGAAG+TGG 0.582918 6_2:+73025282 None:intergenic
GAAAGACCAAAGACAAAGGA+AGG 0.584518 6_2:-73021410 Msa0928130:three_prime_UTR
GGCATTGATAGATTTAAAAG+TGG 0.584753 6_2:-73021812 Msa0928130:CDS
TGCACAAATTTGCTTAACAT+GGG 0.586140 6_2:-73023647 Msa0928130:CDS
GTTTCTCTTTATCAGCCTTG+AGG 0.587313 6_2:+73022518 None:intergenic
TACCTCGATATTCAGGGACT+AGG 0.588940 6_2:+73023428 None:intergenic
TATAGGTTAACTGTGATAGG+AGG 0.592053 6_2:+73025274 None:intergenic
TGAATGAAAATCAATTACAT+TGG 0.596670 6_2:-73021762 Msa0928130:CDS
TAGAGCACACAATAAAGGAA+TGG 0.601855 6_2:-73021253 Msa0928130:three_prime_UTR
TTCTACGAAAGTAAGATGCA+AGG 0.609967 6_2:+73022485 None:intergenic
TACTTTCGTAGAAATCAAAG+AGG 0.610424 6_2:-73022475 Msa0928130:CDS
AATTAATATTGCTTCATGAG+TGG 0.611639 6_2:-73021634 Msa0928130:three_prime_UTR
GACGCTCACACAAATGCTTG+AGG 0.613037 6_2:-73021876 Msa0928130:CDS
GATCTATCAAAGTAGCTCCA+AGG 0.637964 6_2:-73023768 Msa0928130:CDS
TCTTCAATGAAGCTATCTTG+AGG 0.638095 6_2:+73025463 None:intergenic
AAGTGAAAGACCAAAGACAA+AGG 0.666104 6_2:-73021414 Msa0928130:three_prime_UTR
TTGAGCAAGAGTGAAGCACA+TGG 0.667633 6_2:-73021314 Msa0928130:three_prime_UTR
CTCCTAGTCCCTGAATATCG+AGG 0.670680 6_2:-73023430 Msa0928130:intron
TAAGATGCAAGGATCTGACA+TGG 0.678566 6_2:+73022496 None:intergenic
GAGGAAGAGAAACTTGAAGG+AGG 0.683685 6_2:-73021857 Msa0928130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTCAAATATATTTTTATT+TGG - chr6_2:73022978-73022997 Msa0928130:intron 10.0%
!! TATAATTATTATTAATGGTT+GGG + chr6_2:73023734-73023753 None:intergenic 10.0%
!! TCAAGTATAATTATTATTAA+TGG + chr6_2:73023739-73023758 None:intergenic 10.0%
!!! AATAATATTTTAATAGAAGT+TGG + chr6_2:73023865-73023884 None:intergenic 10.0%
!!! TTTTATAATTTAAAATATCG+AGG - chr6_2:73024890-73024909 Msa0928130:intron 10.0%
!! TTATTTATTTGTATACATAT+TGG - chr6_2:73025055-73025074 Msa0928130:intron 10.0%
!! ATAATAAGAATAATAACCTT+TGG + chr6_2:73021262-73021281 None:intergenic 15.0%
!! AAATATCAGAAAATTAAGAA+AGG + chr6_2:73022616-73022635 None:intergenic 15.0%
!! GAAGAAATAATATTATAATG+TGG + chr6_2:73022963-73022982 None:intergenic 15.0%
!! GTATAATTATTATTAATGGT+TGG + chr6_2:73023735-73023754 None:intergenic 15.0%
!! TTTAAAGAAAGTTAATCAAA+AGG - chr6_2:73024627-73024646 Msa0928130:CDS 15.0%
!! TATACAAGTACTATATAATT+AGG + chr6_2:73024659-73024678 None:intergenic 15.0%
!!! AATCATATTAATTTTCTCTT+TGG - chr6_2:73024678-73024697 Msa0928130:CDS 15.0%
!! ATAAAATGAAATTTATGATG+TGG + chr6_2:73024710-73024729 None:intergenic 15.0%
!!! TAACATACTTTTTGTAAATA+TGG - chr6_2:73025479-73025498 Msa0928130:CDS 15.0%
!! AAATATGGAATTAAAGAAAA+TGG - chr6_2:73025494-73025513 Msa0928130:CDS 15.0%
!!! TTTTTTTTCCTTAATGAATA+CGG - chr6_2:73025834-73025853 Msa0928130:CDS 15.0%
!!! ATAATTGTACTTTTGTAAAT+TGG + chr6_2:73025944-73025963 None:intergenic 15.0%
!! CTTTATTGTAAATATAACGA+TGG + chr6_2:73021333-73021352 None:intergenic 20.0%
!!! ATGTGTCAATTTTATTTATG+TGG - chr6_2:73022014-73022033 Msa0928130:intron 20.0%
!!! TGATTTGACAAAATTGTTTT+TGG - chr6_2:73022116-73022135 Msa0928130:intron 20.0%
!! GCAGAAAAATATATTGATAT+TGG - chr6_2:73022249-73022268 Msa0928130:intron 20.0%
!! AAAAATTGTAACTAAGTAGT+TGG - chr6_2:73023075-73023094 Msa0928130:intron 20.0%
!! AAGAGAGATAGTATATTTAA+TGG - chr6_2:73023778-73023797 Msa0928130:CDS 20.0%
!!! TATTTTAATAGAAGTTGGAA+GGG + chr6_2:73023860-73023879 None:intergenic 20.0%
!!! ATATTTTAATAGAAGTTGGA+AGG + chr6_2:73023861-73023880 None:intergenic 20.0%
!! AGCATTATTAAACAATTTGT+AGG - chr6_2:73024209-73024228 Msa0928130:intron 20.0%
!! GCATTATTAAACAATTTGTA+GGG - chr6_2:73024210-73024229 Msa0928130:intron 20.0%
!! CATTATTAAACAATTTGTAG+GGG - chr6_2:73024211-73024230 Msa0928130:intron 20.0%
!!! GATTAACTTTCTTTAAAAGA+CGG + chr6_2:73024624-73024643 None:intergenic 20.0%
!! TGAATGAAAATCAATTACAT+TGG - chr6_2:73025290-73025309 Msa0928130:CDS 20.0%
!!! TTTACATAAACCTTTTTTGT+GGG + chr6_2:73025400-73025419 None:intergenic 20.0%
!!! ATTTACATAAACCTTTTTTG+TGG + chr6_2:73025401-73025420 None:intergenic 20.0%
!!! CTTTAGCTTTTTTGATTATA+GGG - chr6_2:73025699-73025718 Msa0928130:intron 20.0%
! TTAGTAGCTGATATAGTTTA+TGG - chr6_2:73021472-73021491 Msa0928130:three_prime_UTR 25.0%
! ATAGTAACAATAAGTCTCAA+AGG - chr6_2:73021518-73021537 Msa0928130:three_prime_UTR 25.0%
! ATTCTATTCCAATTGAAAAG+AGG - chr6_2:73021746-73021765 Msa0928130:CDS 25.0%
! AAAGATGATGAAGAGATATA+TGG - chr6_2:73022381-73022400 Msa0928130:intron 25.0%
! TCAATTATTTGTAGAGATTC+TGG - chr6_2:73022456-73022475 Msa0928130:CDS 25.0%
!! AAGAAATGTCATTTCTAGAA+AGG - chr6_2:73022550-73022569 Msa0928130:CDS 25.0%
! CTAACGTTCAAGATATATTA+TGG - chr6_2:73022708-73022727 Msa0928130:intron 25.0%
! AATCCATATTGTGAATTAGA+GGG - chr6_2:73023373-73023392 Msa0928130:intron 25.0%
!!! TAATGGTTTTGATTTTTGAC+TGG - chr6_2:73023795-73023814 Msa0928130:intron 25.0%
! AAAACTGTAGATAATTTCAC+AGG - chr6_2:73023820-73023839 Msa0928130:intron 25.0%
!!! ATTTTAATAGAAGTTGGAAG+GGG + chr6_2:73023859-73023878 None:intergenic 25.0%
! TAATAATGCTTCACACTAAT+GGG + chr6_2:73024199-73024218 None:intergenic 25.0%
! TTAATAATGCTTCACACTAA+TGG + chr6_2:73024200-73024219 None:intergenic 25.0%
!!! TTTAAAAGACGGATTAATGT+TGG + chr6_2:73024613-73024632 None:intergenic 25.0%
! GTGTAGACAAAATATATGTT+AGG + chr6_2:73024742-73024761 None:intergenic 25.0%
!! TTCTAATGTGGACTTTTTAA+AGG - chr6_2:73024776-73024795 Msa0928130:CDS 25.0%
!!! TGGACTTTTTAAAGGAAATT+CGG - chr6_2:73024784-73024803 Msa0928130:CDS 25.0%
! TACCATCATACTATGTTTAA+TGG - chr6_2:73025080-73025099 Msa0928130:intron 25.0%
! ATCCATTAAACATAGTATGA+TGG + chr6_2:73025085-73025104 None:intergenic 25.0%
! AATTAATATTGCTTCATGAG+TGG - chr6_2:73025418-73025437 Msa0928130:CDS 25.0%
! ATATGCATTCATGCATATAA+AGG - chr6_2:73025448-73025467 Msa0928130:CDS 25.0%
!!! ATGTTTCACTTTGATTTGTA+GGG + chr6_2:73025527-73025546 None:intergenic 25.0%
!!! TATGTTTCACTTTGATTTGT+AGG + chr6_2:73025528-73025547 None:intergenic 25.0%
! AAATCAAAGTGAAACATATG+TGG - chr6_2:73025530-73025549 Msa0928130:CDS 25.0%
!! AGTAGCATATGGAATATTTT+GGG - chr6_2:73025553-73025572 Msa0928130:CDS 25.0%
! TATGAAATTCATGGAAAGAT+GGG - chr6_2:73025577-73025596 Msa0928130:CDS 25.0%
!!! GCTTTAGCTTTTTTGATTAT+AGG - chr6_2:73025698-73025717 Msa0928130:intron 25.0%
! ATTATAGGGTTTATCTACAA+GGG - chr6_2:73025713-73025732 Msa0928130:intron 25.0%
! ACTTTCAAAAGATTTACTCT+TGG - chr6_2:73025979-73025998 Msa0928130:five_prime_UTR 25.0%
TTGAAGAAGAAAAGAGAAAG+AGG + chr6_2:73021193-73021212 None:intergenic 30.0%
! GTCTCAAAATCTGAAACAAT+TGG + chr6_2:73021670-73021689 None:intergenic 30.0%
TTGTATAGGTTAACTGTGAT+AGG + chr6_2:73021784-73021803 None:intergenic 30.0%
!! CTAAGTCATCACTTTTGTAT+AGG + chr6_2:73021798-73021817 None:intergenic 30.0%
GTTTGTGTATGTACTTGTAT+CGG - chr6_2:73022066-73022085 Msa0928130:intron 30.0%
AGTGTTTCATAGATGCTAAA+TGG - chr6_2:73022211-73022230 Msa0928130:intron 30.0%
! TTATTTCTCTCCAATTGTGT+AGG + chr6_2:73022342-73022361 None:intergenic 30.0%
AAGAAGAAGTTGTCCAAAAT+GGG - chr6_2:73022497-73022516 Msa0928130:CDS 30.0%
CAATCCATATTGTGAATTAG+AGG - chr6_2:73023372-73023391 Msa0928130:intron 30.0%
! TTGCACAAATTTGCTTAACA+TGG - chr6_2:73023404-73023423 Msa0928130:intron 30.0%
! TGCACAAATTTGCTTAACAT+GGG - chr6_2:73023405-73023424 Msa0928130:intron 30.0%
TTATGCTAGAATGAGACATA+TGG - chr6_2:73023588-73023607 Msa0928130:CDS 30.0%
TAATTGTACCTCGATATTCA+GGG + chr6_2:73023633-73023652 None:intergenic 30.0%
CAATTACTTAGCAATATGCA+TGG - chr6_2:73023647-73023666 Msa0928130:CDS 30.0%
! TTTTAATAGAAGTTGGAAGG+GGG + chr6_2:73023858-73023877 None:intergenic 30.0%
! GTTTTGCAAAATTGCAATTG+TGG - chr6_2:73024124-73024143 Msa0928130:intron 30.0%
TTTATATATTGCCAACCCAT+TGG - chr6_2:73024155-73024174 Msa0928130:intron 30.0%
AATAATGCTTCACACTAATG+GGG + chr6_2:73024198-73024217 None:intergenic 30.0%
ATGATCAGAAGGAGAATATT+GGG - chr6_2:73024440-73024459 Msa0928130:intron 30.0%
AGCTTCATTTCTTGTGATAA+TGG - chr6_2:73024483-73024502 Msa0928130:CDS 30.0%
!! TTTCTTGTGATAATGGAAGA+TGG - chr6_2:73024490-73024509 Msa0928130:CDS 30.0%
AACATTCATGAATTTCCTCA+AGG - chr6_2:73024519-73024538 Msa0928130:CDS 30.0%
TACTTTCGTAGAAATCAAAG+AGG - chr6_2:73024577-73024596 Msa0928130:CDS 30.0%
TTGTCTACACTCAACATATT+AGG - chr6_2:73024752-73024771 Msa0928130:CDS 30.0%
AACATATTAGGCTTCTAATG+TGG - chr6_2:73024764-73024783 Msa0928130:CDS 30.0%
! ATAGATAGAGCTGCTTTAAT+AGG + chr6_2:73025006-73025025 None:intergenic 30.0%
GCAGAAGAAGATAAAGATTA+AGG - chr6_2:73025147-73025166 Msa0928130:intron 30.0%
! AGAAGAAATGGAGATTTTGA+TGG - chr6_2:73025219-73025238 Msa0928130:intron 30.0%
!! GGCATTGATAGATTTAAAAG+TGG - chr6_2:73025240-73025259 Msa0928130:CDS 30.0%
! TAGATTTAAAAGTGGTGTCA+AGG - chr6_2:73025248-73025267 Msa0928130:CDS 30.0%
! AGATTTAAAAGTGGTGTCAA+GGG - chr6_2:73025249-73025268 Msa0928130:CDS 30.0%
GGAATTAAAGAAAATGGAGA+AGG - chr6_2:73025500-73025519 Msa0928130:CDS 30.0%
! GAGTAGCATATGGAATATTT+TGG - chr6_2:73025552-73025571 Msa0928130:CDS 30.0%
! GTAGCATATGGAATATTTTG+GGG - chr6_2:73025554-73025573 Msa0928130:CDS 30.0%
!!! ATTTTGGGGTATGAAATTCA+TGG - chr6_2:73025568-73025587 Msa0928130:CDS 30.0%
GTATGAAATTCATGGAAAGA+TGG - chr6_2:73025576-73025595 Msa0928130:CDS 30.0%
GATTATAGGGTTTATCTACA+AGG - chr6_2:73025712-73025731 Msa0928130:intron 30.0%
TAAAGTAGAGCACACAATAA+AGG - chr6_2:73025794-73025813 Msa0928130:intron 30.0%
AATAAAGGAATGGTAGGTTT+AGG - chr6_2:73025809-73025828 Msa0928130:intron 30.0%
ATAAAGGAATGGTAGGTTTA+GGG - chr6_2:73025810-73025829 Msa0928130:CDS 30.0%
TTTCCTTAATGAATACGGAA+AGG - chr6_2:73025839-73025858 Msa0928130:CDS 30.0%
AATATATCAACCATCTAGCT+AGG - chr6_2:73025902-73025921 Msa0928130:CDS 30.0%
!! AGAGCTTCTTCTTTAGAACA+TGG + chr6_2:73021125-73021144 None:intergenic 35.0%
GTAGCTACTCTTTATTCCAA+AGG - chr6_2:73021243-73021262 Msa0928130:three_prime_UTR 35.0%
GTAGCTGATATAGTTTATGG+TGG - chr6_2:73021475-73021494 Msa0928130:three_prime_UTR 35.0%
TCTTCAATGAAGCTATCTTG+AGG + chr6_2:73021592-73021611 None:intergenic 35.0%
TATAGGTTAACTGTGATAGG+AGG + chr6_2:73021781-73021800 None:intergenic 35.0%
GAGAGTGACAAAAACTATGA+TGG - chr6_2:73021820-73021839 Msa0928130:CDS 35.0%
GTATCTGTGTTTCATTGTCT+CGG - chr6_2:73022165-73022184 Msa0928130:intron 35.0%
!!! GATGAGAGTGTTTTTGTGAT+TGG - chr6_2:73022315-73022334 Msa0928130:intron 35.0%
TATGGTGATACAACCACTAT+TGG - chr6_2:73022399-73022418 Msa0928130:intron 35.0%
CAAGAAGAAGTTGTCCAAAA+TGG - chr6_2:73022496-73022515 Msa0928130:CDS 35.0%
TTAATAAGCTGAATCTCTCG+CGG - chr6_2:73022647-73022666 Msa0928130:intron 35.0%
GAGAATTTGACTAGAGATTG+AGG + chr6_2:73022673-73022692 None:intergenic 35.0%
! TTAATCCAACGACTGAGTTT+TGG - chr6_2:73022738-73022757 Msa0928130:intron 35.0%
! TGTCGACAAGTTGAACATTA+TGG + chr6_2:73022816-73022835 None:intergenic 35.0%
TTGTCTCTCCAATGAAACTT+CGG - chr6_2:73022850-73022869 Msa0928130:intron 35.0%
TTCAACAACCGAAGTTTCAT+TGG + chr6_2:73022861-73022880 None:intergenic 35.0%
!!! TTGAGAGTGTTTTATCTCGA+CGG - chr6_2:73022893-73022912 Msa0928130:intron 35.0%
TCACTTAAGAACGAAACTTC+AGG - chr6_2:73023118-73023137 Msa0928130:intron 35.0%
CACTTAAGAACGAAACTTCA+GGG - chr6_2:73023119-73023138 Msa0928130:intron 35.0%
ACTTAAGAACGAAACTTCAG+GGG - chr6_2:73023120-73023139 Msa0928130:intron 35.0%
!! TAACATGGGAAGCACTTAAT+TGG - chr6_2:73023419-73023438 Msa0928130:intron 35.0%
! ATCAACATTTGAAGCTCGTT+TGG + chr6_2:73023464-73023483 None:intergenic 35.0%
AATTGTTGTGCAATTGTTGC+TGG + chr6_2:73023496-73023515 None:intergenic 35.0%
GAGAATGAACCTTATGAGTT+TGG - chr6_2:73023550-73023569 Msa0928130:CDS 35.0%
ATGAACCTTATGAGTTTGGT+AGG - chr6_2:73023554-73023573 Msa0928130:CDS 35.0%
CTCATTCTAGCATAAATCTC+TGG + chr6_2:73023583-73023602 None:intergenic 35.0%
GTAATTGTACCTCGATATTC+AGG + chr6_2:73023634-73023653 None:intergenic 35.0%
GAAAAACTAGTACCTTCCAA+CGG - chr6_2:73023669-73023688 Msa0928130:CDS 35.0%
AAAAACTAGTACCTTCCAAC+GGG - chr6_2:73023670-73023689 Msa0928130:CDS 35.0%
ATTAATGGTTGGGATTTCAC+TGG + chr6_2:73023724-73023743 None:intergenic 35.0%
ACTGTAGATAATTTCACAGG+AGG - chr6_2:73023823-73023842 Msa0928130:intron 35.0%
CTGTAGATAATTTCACAGGA+GGG - chr6_2:73023824-73023843 Msa0928130:intron 35.0%
AGAATCAGATGATGATCAGA+AGG - chr6_2:73024429-73024448 Msa0928130:intron 35.0%
GATGATCAGAAGGAGAATAT+TGG - chr6_2:73024439-73024458 Msa0928130:intron 35.0%
TTCTACGAAAGTAAGATGCA+AGG + chr6_2:73024570-73024589 None:intergenic 35.0%
AGATTCCACATTCATGTAGT+CGG - chr6_2:73024815-73024834 Msa0928130:intron 35.0%
ACTGTCTGATCTTGATTGAA+CGG - chr6_2:73024923-73024942 Msa0928130:intron 35.0%
AATAGGATCAGACTTCTTTG+CGG + chr6_2:73024989-73025008 None:intergenic 35.0%
AGTAAAGTGAGAGTCATAGA+TGG - chr6_2:73025328-73025347 Msa0928130:CDS 35.0%
! CAATGTGATGGGAAAAAAAG+TGG + chr6_2:73025376-73025395 None:intergenic 35.0%
! TTTTTGTGGGTCAATGTGAT+GGG + chr6_2:73025387-73025406 None:intergenic 35.0%
!!! TTTTTTGTGGGTCAATGTGA+TGG + chr6_2:73025388-73025407 None:intergenic 35.0%
ATCACATTGACCCACAAAAA+AGG - chr6_2:73025387-73025406 Msa0928130:CDS 35.0%
AACATATGTGGAGTAGCATA+TGG - chr6_2:73025542-73025561 Msa0928130:CDS 35.0%
ATTCATGGAAAGATGGGTAA+AGG - chr6_2:73025583-73025602 Msa0928130:CDS 35.0%
TTCATGGAAAGATGGGTAAA+GGG - chr6_2:73025584-73025603 Msa0928130:CDS 35.0%
AAGTGAAAGACCAAAGACAA+AGG - chr6_2:73025638-73025657 Msa0928130:CDS 35.0%
TAGAGCACACAATAAAGGAA+TGG - chr6_2:73025799-73025818 Msa0928130:intron 35.0%
TCTCTCTTTCAAGAACTAAC+AGG + chr6_2:73025866-73025885 None:intergenic 35.0%
! GAAGTGGTCCTCTTTTCAAT+TGG + chr6_2:73021757-73021776 None:intergenic 40.0%
GTTTGTGTCAGTGTTGTGTT+CGG - chr6_2:73022042-73022061 Msa0928130:intron 40.0%
! TGTGATTGGTCCTACACAAT+TGG - chr6_2:73022329-73022348 Msa0928130:intron 40.0%
CTTAGATGTTGAGCCAATAG+TGG + chr6_2:73022415-73022434 None:intergenic 40.0%
!! CACTATTGGCTCAACATCTA+AGG - chr6_2:73022413-73022432 Msa0928130:intron 40.0%
CATCTAAGGACTCTTCTGAT+TGG - chr6_2:73022427-73022446 Msa0928130:CDS 40.0%
! ACTGCGTAAGATTCCCATTT+TGG + chr6_2:73022513-73022532 None:intergenic 40.0%
GCACAAAAGCTTCATGAAAC+TGG - chr6_2:73022579-73022598 Msa0928130:CDS 40.0%
GATCTATCAAAGTAGCTCCA+AGG - chr6_2:73023284-73023303 Msa0928130:intron 40.0%
TAGCTCCAAGGTCAATTTCA+GGG - chr6_2:73023296-73023315 Msa0928130:intron 40.0%
ATTCTCCCTGAAATTGACCT+TGG + chr6_2:73023304-73023323 None:intergenic 40.0%
GCACCCTCTAATTCACAATA+TGG + chr6_2:73023379-73023398 None:intergenic 40.0%
CGAGCTTCAAATGTTGATGT+TGG - chr6_2:73023466-73023485 Msa0928130:CDS 40.0%
! ATATTGCCAACCCATTGGTT+AGG - chr6_2:73024160-73024179 Msa0928130:intron 40.0%
! TATTGCCAACCCATTGGTTA+GGG - chr6_2:73024161-73024180 Msa0928130:intron 40.0%
GTTTCTCTTTATCAGCCTTG+AGG + chr6_2:73024537-73024556 None:intergenic 40.0%
TAAGATGCAAGGATCTGACA+TGG + chr6_2:73024559-73024578 None:intergenic 40.0%
TCGTAGAAATCAAAGAGGCT+TGG - chr6_2:73024582-73024601 Msa0928130:CDS 40.0%
ATACTCCGACTACATGAATG+TGG + chr6_2:73024823-73024842 None:intergenic 40.0%
CTTGAGGAAGAGAAACTTGA+AGG - chr6_2:73025192-73025211 Msa0928130:intron 40.0%
CTTGAAGGAGGAAGAAGAAA+TGG - chr6_2:73025207-73025226 Msa0928130:intron 40.0%
TGATGGGAAAAAAAGTGGAG+TGG + chr6_2:73025371-73025390 None:intergenic 40.0%
TCATGGAAAGATGGGTAAAG+GGG - chr6_2:73025585-73025604 Msa0928130:CDS 40.0%
GAAAGACCAAAGACAAAGGA+AGG - chr6_2:73025642-73025661 Msa0928130:CDS 40.0%
CTTGTACCTTCCTTTGTCTT+TGG + chr6_2:73025651-73025670 None:intergenic 40.0%
GCACACAATAAAGGAATGGT+AGG - chr6_2:73025803-73025822 Msa0928130:intron 40.0%
GGTCCTTTCCGTATTCATTA+AGG + chr6_2:73025845-73025864 None:intergenic 40.0%
TACAACAAGTCCTAGCTAGA+TGG + chr6_2:73025915-73025934 None:intergenic 40.0%
AACTGTGATAGGAGGAGAAG+TGG + chr6_2:73021773-73021792 None:intergenic 45.0%
TATTGCCTCTCCAGTTTCTC+CGG + chr6_2:73022764-73022783 None:intergenic 45.0%
!! ACTAAGTAGTTGGCTTGAGC+TGG - chr6_2:73023085-73023104 Msa0928130:intron 45.0%
GTAGCTCCAAGGTCAATTTC+AGG - chr6_2:73023295-73023314 Msa0928130:intron 45.0%
GGTCTCCTACCAAACTCATA+AGG + chr6_2:73023562-73023581 None:intergenic 45.0%
TACCTCGATATTCAGGGACT+AGG + chr6_2:73023627-73023646 None:intergenic 45.0%
ATGCATGGACCCTAACCAAT+GGG + chr6_2:73024173-73024192 None:intergenic 45.0%
TATGCATGGACCCTAACCAA+TGG + chr6_2:73024174-73024193 None:intergenic 45.0%
GAGGAAGAGAAACTTGAAGG+AGG - chr6_2:73025195-73025214 Msa0928130:intron 45.0%
AAAGATGGGTAAAGGGGAAG+AGG - chr6_2:73025591-73025610 Msa0928130:CDS 45.0%
TTGAGCAAGAGTGAAGCACA+TGG - chr6_2:73025738-73025757 Msa0928130:intron 45.0%
!! AAAAAAATTAGTTATTATTA+AGG - chr6_2:73023159-73023178 Msa0928130:intron 5.0%
!! TAAAATATTATTGTAAAAAT+TGG - chr6_2:73023873-73023892 Msa0928130:intron 5.0%
!! TCCAACGACTGAGTTTTGGC+CGG - chr6_2:73022742-73022761 Msa0928130:intron 50.0%
!! TGAGTTTTGGCCGGAGAAAC+TGG - chr6_2:73022751-73022770 Msa0928130:intron 50.0%
TCAGGGACTAGGAGCAACTT+TGG + chr6_2:73023616-73023635 None:intergenic 50.0%
CTCCTAGTCCCTGAATATCG+AGG - chr6_2:73023622-73023641 Msa0928130:CDS 50.0%
CTAGTACCTTCCAACGGGAA+TGG - chr6_2:73023675-73023694 Msa0928130:CDS 50.0%
AATGGATCCTCTCCAGTGAC+TGG - chr6_2:73023693-73023712 Msa0928130:CDS 50.0%
ATGGACCCTAACCAATGGGT+TGG + chr6_2:73024169-73024188 None:intergenic 50.0%
CACACTAATGGGGCTATGCA+TGG + chr6_2:73024188-73024207 None:intergenic 50.0%
GACGCTCACACAAATGCTTG+AGG - chr6_2:73025176-73025195 Msa0928130:intron 50.0%
TCCGGCCAAAACTCAGTCGT+TGG + chr6_2:73022746-73022765 None:intergenic 55.0%
TTTGGCCGGAGAAACTGGAG+AGG - chr6_2:73022756-73022775 Msa0928130:intron 55.0%
GAGGATCCATTCCCGTTGGA+AGG + chr6_2:73023684-73023703 None:intergenic 55.0%
TGGAGAGGATCCATTCCCGT+TGG + chr6_2:73023688-73023707 None:intergenic 55.0%
GATCCTCTCCAGTGACTGGA+GGG - chr6_2:73023697-73023716 Msa0928130:CDS 55.0%
GGATCCTCTCCAGTGACTGG+AGG - chr6_2:73023696-73023715 Msa0928130:CDS 60.0%
TCACTGGACCCTCCAGTCAC+TGG + chr6_2:73023708-73023727 None:intergenic 60.0%
GGACCCTCCAGTCACTGGAG+AGG + chr6_2:73023703-73023722 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 73021065 73026009 73021065 ID=Msa0928130;Name=Msa0928130
chr6_2 mRNA 73021065 73026009 73021065 ID=Msa0928130-mRNA-1;Parent=Msa0928130;Name=Msa0928130-mRNA-1;_AED=0.09;_eAED=0.09;_QI=54|1|1|1|1|1|6|613|597
chr6_2 exon 73021065 73021923 73021065 ID=Msa0928130-mRNA-1:exon:12433;Parent=Msa0928130-mRNA-1
chr6_2 exon 73022426 73022643 73022426 ID=Msa0928130-mRNA-1:exon:12432;Parent=Msa0928130-mRNA-1
chr6_2 exon 73023431 73023799 73023431 ID=Msa0928130-mRNA-1:exon:12431;Parent=Msa0928130-mRNA-1
chr6_2 exon 73024474 73024821 73024474 ID=Msa0928130-mRNA-1:exon:12430;Parent=Msa0928130-mRNA-1
chr6_2 exon 73025233 73025699 73025233 ID=Msa0928130-mRNA-1:exon:12429;Parent=Msa0928130-mRNA-1
chr6_2 exon 73025810 73026009 73025810 ID=Msa0928130-mRNA-1:exon:12428;Parent=Msa0928130-mRNA-1
chr6_2 five_prime_UTR 73025956 73026009 73025956 ID=Msa0928130-mRNA-1:five_prime_utr;Parent=Msa0928130-mRNA-1
chr6_2 CDS 73025810 73025955 73025810 ID=Msa0928130-mRNA-1:cds;Parent=Msa0928130-mRNA-1
chr6_2 CDS 73025233 73025699 73025233 ID=Msa0928130-mRNA-1:cds;Parent=Msa0928130-mRNA-1
chr6_2 CDS 73024474 73024821 73024474 ID=Msa0928130-mRNA-1:cds;Parent=Msa0928130-mRNA-1
chr6_2 CDS 73023431 73023799 73023431 ID=Msa0928130-mRNA-1:cds;Parent=Msa0928130-mRNA-1
chr6_2 CDS 73022426 73022643 73022426 ID=Msa0928130-mRNA-1:cds;Parent=Msa0928130-mRNA-1
chr6_2 CDS 73021678 73021923 73021678 ID=Msa0928130-mRNA-1:cds;Parent=Msa0928130-mRNA-1
chr6_2 three_prime_UTR 73021065 73021677 73021065 ID=Msa0928130-mRNA-1:three_prime_utr;Parent=Msa0928130-mRNA-1
Gene Sequence

>Msa0928130

ATGCCATGTTCTAAAGAAGAAGCTCTTATTAGACTCTTCTACAATTCTTCAAGCTCTTTCAAACTTCTCTTCCTCTTTCTCTTTTCTTCTTCAACTTTGCTTCTCAAAATCTTAAACTTCATTAGTAGCTACTCTTTATTCCAAAGTGATCAACAATATGAATATGTTTCATCTGAAGAAGAAGAAGAAGAAGAAGAAATTCAAGAAAGTTATTGTTATGAAGATTCTATTGAGAAAGATCATTTAGTAGCTGATATAGTTTATGGTGGAGAAGCTCTTGTATTTCTTCATAGTAACAATAAGTCTCAAAGGAATCATTCTTTTTCTTTTGAAGAAGAAGAAGAAGAAGAGTTTATAACACCTCAAGATAGCTTCATTGAAGAGTTTTCTTCAGAAGAAAAATTTTCAAGTGAAAGTTTGCATGTTCATCAGAAGTCACCAATTGTTTCAGATTTTGAGACAGAAACAAATGAAACAGAAATTCAAACAGAAGAAGAAGATGCTGATTCTGTTCAAGATTCTATTCCAATTGAAAAGAGGACCACTTCTCCTCCTATCACAGTTAACCTATACAAAAGTGATGACTTAGTAGAGAGTGACAAAAACTATGATGAAAAATATATTGATATTGGAGTTATAAAAAATGAGAAAGTGCAAGAAGAAAAAATTACAAGAGATGAGAGTGTTTTTGTGATTGGTCCTACACAATTGGAGAGAAATAAGAAGTTGATTATTGAAGAAAAAGATGATGAAGAGATATATGGTGATACAACCACTATTGGCTCAACATCTAAGGACTCTTCTGATTGGAGAAGTTCAATTATTTGTAGAGATTCTGGAACTGATGATTCATCATCAAGAAGAAGTTGTCCAAAATGGGAATCTTACGCAGTTTTTCAAAAATATGATGAAGAAATGTCATTTCTAGAAAGGATTAGTGCACAAAAGCTTCATGAAACTGAATCATTGAGATCTATCAAAGTAGCTCCAAGGTCAATTTCAGGGAGAATTGTGTACAAACTTTCAAGTATGAACAAAAAATCAGAAGATATAAGTCACAATCCATATTGTGAATTAGAGGGTGCATATGTTGCACAAATTTGCTTAACATGGGAAGCACTTAATTGGAACTACAAGAATTTTCAAACCAAACGAGCTTCAAATGTTGATGTTGGTTGTCCAGCAACAATTGCACAACAATTTCAACAATTTCAAGTTTTGTTGCAAAGATATGTAGAGAATGAACCTTATGAGTTTGGTAGGAGACCAGAGATTTATGCTAGAATGAGACATATGGCACCAAAGTTGCTCCTAGTCCCTGAATATCGAGAATCAGATGATGATCAGAAGGAGAATATTGGGTTTAACACTAAAATATCATCAGCTTCATTTCTTGTGATAATGGAAGATGGAATCAGAACATTCATGAATTTCCTCAAGGCTGATAAAGAGAAACCATGTCAGATCCTTGCATCTTACTTTCGTAGAAATCAAAGAGGCTTGGTTGATCCAACATTAATCCGTCTTTTAAAGAAAGTTAATCAAAAGAAGAAGATAAAGATTAAGGATCTTCGACGCTCACACAAATGCTTGAGGAAGAGAAACTTGAAGGAGGAAGAAGAAATGGAGATTTTGATGGCATTGATAGATTTAAAAGTGGTGTCAAGGGTTTTAAGAATGAGTGACATGAATGAAAATCAATTACATTGGTGTGAAGAGAAAAATAGTAAAGTGAGAGTCATAGATGGAAAACTACAAAGAGATTCCACTCCACTTTTTTTCCCATCACATTGA

Protein sequence

>Msa0928130

MPCSKEEALIRLFYNSSSSFKLLFLFLFSSSTLLLKILNFISSYSLFQSDQQYEYVSSEEEEEEEEIQESYCYEDSIEKDHLVADIVYGGEALVFLHSNNKSQRNHSFSFEEEEEEEFITPQDSFIEEFSSEEKFSSESLHVHQKSPIVSDFETETNETEIQTEEEDADSVQDSIPIEKRTTSPPITVNLYKSDDLVESDKNYDEKYIDIGVIKNEKVQEEKITRDESVFVIGPTQLERNKKLIIEEKDDEEIYGDTTTIGSTSKDSSDWRSSIICRDSGTDDSSSRRSCPKWESYAVFQKYDEEMSFLERISAQKLHETESLRSIKVAPRSISGRIVYKLSSMNKKSEDISHNPYCELEGAYVAQICLTWEALNWNYKNFQTKRASNVDVGCPATIAQQFQQFQVLLQRYVENEPYEFGRRPEIYARMRHMAPKLLLVPEYRESDDDQKENIGFNTKISSASFLVIMEDGIRTFMNFLKADKEKPCQILASYFRRNQRGLVDPTLIRLLKKVNQKKKIKIKDLRRSHKCLRKRNLKEEEEMEILMALIDLKVVSRVLRMSDMNENQLHWCEEKNSKVRVIDGKLQRDSTPLFFPSH*