AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0267370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0267370 MtrunA17_Chr7g0258941 97.742 310 7 0 1 310 1 310 0.0 637
Msa0267370 MtrunA17_Chr1g0175721 80.000 310 61 1 1 310 1 309 0.0 528
Msa0267370 MtrunA17_Chr3g0126851 72.662 278 71 1 37 309 33 310 2.14e-155 437
Msa0267370 MtrunA17_Chr1g0147041 74.906 267 67 0 43 309 52 318 4.87e-155 437
Msa0267370 MtrunA17_Chr8g0346801 72.263 274 75 1 36 309 22 294 1.02e-153 432
Msa0267370 MtrunA17_Chr3g0083571 73.333 270 68 1 40 309 38 303 9.21e-153 430
Msa0267370 MtrunA17_Chr7g0275701 73.432 271 69 1 39 309 44 311 5.50e-151 426
Msa0267370 MtrunA17_Chr8g0352701 68.929 280 79 2 38 309 24 303 2.46e-148 419
Msa0267370 MtrunA17_Chr5g0433631 25.912 274 189 6 33 306 7 266 5.00e-22 94.7
Msa0267370 MtrunA17_Chr4g0051351 28.972 214 139 5 58 270 96 297 2.75e-21 92.4
Msa0267370 MtrunA17_Chr7g0223111 26.316 209 144 4 59 267 37 235 1.22e-18 85.1
Msa0267370 MtrunA17_Chr5g0428191 24.903 257 170 6 58 310 10 247 7.08e-18 82.4
Msa0267370 MtrunA17_Chr5g0424971 30.303 132 86 4 59 189 18 144 6.73e-17 79.7
Msa0267370 MtrunA17_Chr5g0433541 28.972 214 132 6 59 267 11 209 1.99e-16 77.4
Msa0267370 MtrunA17_Chr5g0433551 28.972 214 132 6 59 267 11 209 1.99e-16 77.4
Msa0267370 MtrunA17_Chr5g0433411 25.424 236 162 6 72 307 47 268 4.60e-16 77.8
Msa0267370 MtrunA17_Chr5g0433531 27.419 248 161 5 55 302 7 235 7.23e-16 77.0
Msa0267370 MtrunA17_Chr2g0298951 32.743 113 71 2 75 184 9 119 1.51e-14 72.8
Msa0267370 MtrunA17_Chr5g0433661 27.273 209 142 5 59 267 45 243 1.40e-13 70.5
Msa0267370 MtrunA17_Chr7g0259431 29.139 151 101 3 75 225 9 153 4.80e-13 68.6
Msa0267370 MtrunA17_Chr5g0433521 27.815 151 103 3 75 225 23 167 1.26e-12 67.4
Msa0267370 MtrunA17_Chr1g0169381 31.624 117 77 2 58 174 10 123 2.36e-12 63.9
Msa0267370 MtrunA17_Chr5g0433731 24.691 243 148 9 67 302 2 216 8.28e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0267370 AT3G58040.1 78.065 310 66 2 1 310 1 308 0.0 510
Msa0267370 AT3G58040.3 78.065 310 66 2 1 310 1 308 0.0 510
Msa0267370 AT2G41980.1 76.129 310 69 1 1 310 1 305 2.36e-180 500
Msa0267370 AT3G61790.1 76.357 258 61 0 52 309 53 310 3.74e-155 437
Msa0267370 AT4G27880.1 72.348 264 73 0 46 309 48 311 5.17e-151 426
Msa0267370 AT5G53360.1 75.369 203 50 0 107 309 15 217 8.14e-119 341
Msa0267370 AT5G53360.3 75.369 203 50 0 107 309 15 217 8.14e-119 341
Msa0267370 AT3G58040.2 74.146 205 51 2 1 205 1 203 9.94e-109 315
Msa0267370 AT3G13672.1 50.495 202 94 2 111 309 13 211 1.20e-70 218
Msa0267370 AT3G13672.2 44.978 229 93 3 111 309 13 238 6.00e-65 204
Msa0267370 AT5G53360.2 74.286 105 27 0 205 309 60 164 2.34e-56 181
Msa0267370 AT5G37870.1 38.281 128 76 2 58 185 41 165 2.28e-23 97.4
Msa0267370 AT5G37930.1 37.692 130 78 2 58 187 109 235 8.34e-21 91.7
Msa0267370 AT5G37890.1 26.721 247 166 6 58 302 47 280 8.44e-20 87.8
Msa0267370 AT5G62800.1 26.953 256 157 8 58 302 39 275 1.15e-17 82.8
Msa0267370 AT5G37910.1 25.692 253 177 6 58 309 34 276 2.43e-17 80.9
Msa0267370 AT1G66620.1 30.968 155 102 2 23 174 2 154 2.88e-17 81.3
Msa0267370 AT5G62800.2 27.103 214 132 5 58 261 39 238 5.87e-17 80.5
Msa0267370 AT1G66630.1 36.885 122 73 2 58 177 45 164 1.73e-15 75.9
Msa0267370 AT1G66660.2 35.714 112 70 1 58 169 102 211 4.28e-15 75.5
Msa0267370 AT1G66650.1 32.593 135 86 3 58 189 82 214 5.93e-15 74.7
Msa0267370 AT1G66610.2 32.773 119 76 2 7 121 102 220 3.31e-13 68.6

Find 101 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTAGTTTAATTTGAAATT+TGG 0.087345 2_2:+68956672 None:intergenic
TATGGCCTTCTTACGGTTTA+TGG 0.117780 2_2:-68953241 Msa0267370:CDS
TTATTGTATGAAGGATATTT+TGG 0.246908 2_2:-68952743 Msa0267370:three_prime_UTR
AAACTCAAAGCTAAAGAAAT+TGG 0.250381 2_2:-68955101 Msa0267370:five_prime_UTR
GTGTTTGTTGGTATCGATTA+TGG 0.251697 2_2:+68956512 None:intergenic
TTTAGTTTAATTTGAAATTT+GGG 0.257512 2_2:+68956673 None:intergenic
TGAGAATCACCGGTCGTATA+TGG 0.277771 2_2:-68953026 Msa0267370:CDS
TTCAATTCCACACATCTTAG+AGG 0.289979 2_2:-68952844 Msa0267370:three_prime_UTR
GGAGAAAGTGGCGGAATCTT+TGG 0.289986 2_2:-68954378 Msa0267370:CDS
AAGTGTTGGCCAGAGACTTT+TGG 0.299363 2_2:-68955346 Msa0267370:five_prime_UTR
GACAGGTGGGACAGAGATTA+TGG 0.312010 2_2:+68954435 None:intergenic
CATATGGGCGCAAACTTATA+TGG 0.315205 2_2:-68953170 Msa0267370:CDS
AGCTTAGAAGTCGGTGCATA+TGG 0.322324 2_2:-68953186 Msa0267370:CDS
ATGGCCTTCTTACGGTTTAT+GGG 0.324454 2_2:-68953240 Msa0267370:CDS
TTTCTTGACTCGCTGGATCT+TGG 0.328460 2_2:-68955404 Msa0267370:five_prime_UTR
CCCACCTGTCACCATGATCT+TGG 0.343411 2_2:-68954422 Msa0267370:CDS
GCATTTCTGTTTGCACTTTG+AGG 0.351473 2_2:-68953292 Msa0267370:CDS
TGTTTAAGCTTTGCATAGTA+AGG 0.352415 2_2:+68954311 None:intergenic
ACCATGATCTTGGGAATATA+AGG 0.354435 2_2:-68954412 Msa0267370:CDS
CACTTTGAGGCTTTCCAGCT+TGG 0.356658 2_2:-68953279 Msa0267370:CDS
TCCACTAGTGTTGGATTGAA+TGG 0.361198 2_2:-68954937 Msa0267370:CDS
GAATATAAGGTGTTTGGCTC+TGG 0.367722 2_2:-68954399 Msa0267370:CDS
TTGACTTCAGATTATGAAAC+AGG 0.369439 2_2:-68955003 Msa0267370:CDS
TGTAAGTGTACAGTTAATCT+TGG 0.383421 2_2:+68954963 None:intergenic
TCAAATTATTTATTGTATGA+AGG 0.396071 2_2:-68952752 Msa0267370:three_prime_UTR
GAACATAACGTATGGCCATT+TGG 0.409073 2_2:+68954476 None:intergenic
TATCCTAGGGAAACTCTATA+AGG 0.411434 2_2:-68955295 Msa0267370:intron
TCTTGGGAATATAAGGTGTT+TGG 0.412899 2_2:-68954405 Msa0267370:CDS
CCACCTGTCACCATGATCTT+GGG 0.439936 2_2:-68954421 Msa0267370:CDS
CATTGTATAGAGCTTATTAC+GGG 0.448456 2_2:-68952940 Msa0267370:three_prime_UTR
TCATTGTATAGAGCTTATTA+CGG 0.450666 2_2:-68952941 Msa0267370:three_prime_UTR
CCTTTAGATCGGATCAGAAA+TGG 0.457706 2_2:-68955070 Msa0267370:exon
CCATACAATTGTCCCTATGC+TGG 0.460910 2_2:-68954266 Msa0267370:CDS
TACTCGTGCTAGATTATCCT+AGG 0.462366 2_2:-68955309 Msa0267370:five_prime_UTR
CCATTTCTGATCCGATCTAA+AGG 0.471216 2_2:+68955070 None:intergenic
AAGCAGTGCACCTGGTGAAT+TGG 0.478324 2_2:+68954838 None:intergenic
CCTTGCAGATATCAGAGTCT+AGG 0.480797 2_2:-68954350 Msa0267370:CDS
AAACAACAACGTTGTTGTGC+TGG 0.485077 2_2:-68956553 Msa0267370:five_prime_UTR
CCAGCATAGGGACAATTGTA+TGG 0.489704 2_2:+68954266 None:intergenic
GGATCTGAGTGCTCCGTGAT+GGG 0.492368 2_2:-68954245 Msa0267370:CDS
ATCTTCTTTCCATATACGAC+CGG 0.495873 2_2:+68953017 None:intergenic
CATTCACGCCCAAAAGTCTC+TGG 0.496141 2_2:+68955337 None:intergenic
CTTAAACATGAGCAAAATTG+TGG 0.498784 2_2:-68954296 Msa0267370:CDS
CTTACAAAATCCACTAGTGT+TGG 0.503995 2_2:-68954946 Msa0267370:CDS
TGGATCTGAGTGCTCCGTGA+TGG 0.504556 2_2:-68954246 Msa0267370:CDS
TCAGAAATGGCTCCGGGAGG+AGG 0.504929 2_2:-68955057 Msa0267370:exon
TTATATGGCAAGGAATTCCT+AGG 0.506193 2_2:-68953155 Msa0267370:CDS
TACAATTTGAACATAACGTA+TGG 0.506717 2_2:+68954468 None:intergenic
AAAGTTAGAGATAGTCAAGA+TGG 0.510900 2_2:-68953111 Msa0267370:CDS
TGACTGTCGCGTATGCTCCT+AGG 0.511842 2_2:+68953138 None:intergenic
ATCTCTTGTTGATCATCTCA+AGG 0.513200 2_2:-68954213 Msa0267370:CDS
ATCGGATCAGAAATGGCTCC+GGG 0.513632 2_2:-68955063 Msa0267370:exon
CAGTGCACCTGGTGAATTGG+AGG 0.518998 2_2:+68954841 None:intergenic
ACCTTATATTCCCAAGATCA+TGG 0.520727 2_2:+68954411 None:intergenic
GATCGGATCAGAAATGGCTC+CGG 0.522089 2_2:-68955064 Msa0267370:exon
GTTTAAGCTTTGCATAGTAA+GGG 0.527406 2_2:+68954312 None:intergenic
AAACTGGAGCTGTACCAAGC+TGG 0.527478 2_2:+68953265 None:intergenic
TCCACACATCTTAGAGGTGA+GGG 0.527827 2_2:-68952838 Msa0267370:three_prime_UTR
TCCATTCAATCCAACACTAG+TGG 0.529508 2_2:+68954936 None:intergenic
TGGAAAGAAATCCTTTAGAT+CGG 0.531076 2_2:-68955081 Msa0267370:five_prime_UTR
TGTGTGTTTCAGTGTCCAAA+TGG 0.537348 2_2:-68954491 Msa0267370:intron
TTGAGATGATCAACAAGAGA+TGG 0.537565 2_2:+68954215 None:intergenic
ATTTCTTACATGTTAAGTGT+TGG 0.537594 2_2:-68955360 Msa0267370:five_prime_UTR
GTGTTTGGCTCTGGAGAAAG+TGG 0.543736 2_2:-68954390 Msa0267370:CDS
TTTGACATATCGATGATTGA+AGG 0.543895 2_2:+68954157 None:intergenic
AATGGTGTGCATGACTTACT+CGG 0.545764 2_2:-68954892 Msa0267370:CDS
CTTGCAGATATCAGAGTCTA+GGG 0.551230 2_2:-68954349 Msa0267370:CDS
CACGGAACTAGTTCAAAGAA+TGG 0.551902 2_2:-68954910 Msa0267370:CDS
ATTCCCAAGATCATGGTGAC+AGG 0.559471 2_2:+68954418 None:intergenic
TGGTTTGTTTGATGGTTCCA+AGG 0.559965 2_2:-68956083 Msa0267370:intron
CCCAAGATCATGGTGACAGG+TGG 0.563063 2_2:+68954421 None:intergenic
ATCGCCCATAAACCGTAAGA+AGG 0.570793 2_2:+68953236 None:intergenic
CACAAGGTTGACATGCATGA+TGG 0.576711 2_2:-68954185 Msa0267370:CDS
TTCAGTTACAGCTTAGAAGT+CGG 0.578117 2_2:-68953195 Msa0267370:CDS
TCTTTGAAAATACCTCCTCC+CGG 0.578930 2_2:+68955045 None:intergenic
TAAAAGTGAAAGAAAGCTGA+AGG 0.579210 2_2:+68952800 None:intergenic
AAAACGAAGTCACAATTCAA+AGG 0.583618 2_2:-68952698 None:intergenic
GAGTTGAAATTGAGAATCAC+CGG 0.584234 2_2:-68953036 Msa0267370:CDS
TTCCACACATCTTAGAGGTG+AGG 0.584877 2_2:-68952839 Msa0267370:three_prime_UTR
TTTCATAATCTGAAGTCAAG+AGG 0.592761 2_2:+68955007 None:intergenic
ATACCTTATAGAGTTTCCCT+AGG 0.597802 2_2:+68955292 None:intergenic
GCTTAGAAGTCGGTGCATAT+GGG 0.598441 2_2:-68953185 Msa0267370:CDS
GAGCACTCAGATCCAGCATA+GGG 0.606589 2_2:+68954254 None:intergenic
GATGTATCCTCCAATTCACC+AGG 0.614890 2_2:-68954848 Msa0267370:intron
GGGCGCAAACTTATATGGCA+AGG 0.619069 2_2:-68953165 Msa0267370:CDS
GGAGCACTCAGATCCAGCAT+AGG 0.620419 2_2:+68954253 None:intergenic
ACCCTCACCTCTAAGATGTG+TGG 0.620792 2_2:+68952837 None:intergenic
CCAAGATCATGGTGACAGGT+GGG 0.628103 2_2:+68954422 None:intergenic
AGATGGAATGTCGCCCATCA+CGG 0.630084 2_2:+68954232 None:intergenic
TAATAATGTATTAAGCGTGA+AGG 0.632431 2_2:-68952976 Msa0267370:three_prime_UTR
AAGATGGACTAATAATTCAG+AGG 0.639261 2_2:-68953095 Msa0267370:CDS
TTCAGATTATGAAACAGGCA+AGG 0.651216 2_2:-68954998 Msa0267370:CDS
GTTGGATTGAATGGAAAGCA+CGG 0.653878 2_2:-68954928 Msa0267370:CDS
ATGGTGTGCATGACTTACTC+GGG 0.659438 2_2:-68954891 Msa0267370:CDS
CCTAGACTCTGATATCTGCA+AGG 0.660946 2_2:+68954350 None:intergenic
TCATCTCAAGGATGAACACA+AGG 0.664179 2_2:-68954201 Msa0267370:CDS
ACTCGTGCTAGATTATCCTA+GGG 0.666126 2_2:-68955308 Msa0267370:five_prime_UTR
TTTGGCTCTGGAGAAAGTGG+CGG 0.674324 2_2:-68954387 Msa0267370:CDS
ATGAAGTTGAAAATGCCACA+TGG 0.708825 2_2:-68954124 Msa0267370:CDS
ACTTACAGTGAGCATCCATG+TGG 0.726222 2_2:+68954109 None:intergenic
GGATCAGAAATGGCTCCGGG+AGG 0.729551 2_2:-68955060 Msa0267370:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAACATAATGCAAAAA+TGG + chr2_2:68952941-68952960 None:intergenic 15.0%
!!! ATTTGATATTTTGTTTTTCA+TGG - chr2_2:68953044-68953063 Msa0267370:CDS 15.0%
!!! TTTATTTGTTTCTATGATTT+TGG - chr2_2:68953365-68953384 Msa0267370:intron 15.0%
!! GCAAAATTAAATTATATTTG+TGG - chr2_2:68953781-68953800 Msa0267370:intron 15.0%
!!! ATGTAAGAAATAACTATTTT+TGG + chr2_2:68954003-68954022 None:intergenic 15.0%
!!! ATTAAAAAGTATTGTAATCT+TGG + chr2_2:68955452-68955471 None:intergenic 15.0%
!! TACTTCAAATATTTATTAGT+TGG + chr2_2:68955977-68955996 None:intergenic 15.0%
!! TCAAATTATTTATTGTATGA+AGG - chr2_2:68956620-68956639 Msa0267370:five_prime_UTR 15.0%
!! TCAAATTGTGATTCTATTTA+TGG - chr2_2:68953168-68953187 Msa0267370:CDS 20.0%
!! ATTTAAATGTAGAAGAGATA+TGG - chr2_2:68953403-68953422 Msa0267370:intron 20.0%
!!! GATAAAAACCTTTAGTTTAT+AGG - chr2_2:68954755-68954774 Msa0267370:intron 20.0%
!!! TTACAATTGGTAACTATTAT+TGG + chr2_2:68954821-68954840 None:intergenic 20.0%
!! GAAATATTAGAAATAAAAGC+AGG + chr2_2:68954847-68954866 None:intergenic 20.0%
!!! ATTTAATTTTACGTTCACAA+TGG - chr2_2:68955401-68955420 Msa0267370:five_prime_UTR 20.0%
!!! TAATAAAAACTTGCTTCTAT+TGG - chr2_2:68955468-68955487 Msa0267370:intron 20.0%
!!! TTATTGTATGAAGGATATTT+TGG - chr2_2:68956629-68956648 Msa0267370:five_prime_UTR 20.0%
!! AAAAAAAAGTGTGTGTTTGT+TGG + chr2_2:68952875-68952894 None:intergenic 25.0%
! TAATGCAAAAATGGAACATT+TGG + chr2_2:68952932-68952951 None:intergenic 25.0%
!!! TTTTTGTTTTTTCCCTTGAT+TGG - chr2_2:68953084-68953103 Msa0267370:CDS 25.0%
!!! TTTTTGATTGGTTTGTTTGA+TGG - chr2_2:68953281-68953300 Msa0267370:CDS 25.0%
!!! TATGATTTTGGTCTGTTTTA+TGG - chr2_2:68953377-68953396 Msa0267370:intron 25.0%
! ATTTCTTACATGTTAAGTGT+TGG - chr2_2:68954012-68954031 Msa0267370:intron 25.0%
!!! TAGCTTTGAGTTTATTTTTG+TGG + chr2_2:68954264-68954283 None:intergenic 25.0%
! AAACTCAAAGCTAAAGAAAT+TGG - chr2_2:68954271-68954290 Msa0267370:CDS 25.0%
! TTTATCTGTTTATTATCGCT+TGG + chr2_2:68954741-68954760 None:intergenic 25.0%
! GTGAAATACCTATAAACTAA+AGG + chr2_2:68954766-68954785 None:intergenic 25.0%
! TAAAAGCAGGATATTACAAT+TGG + chr2_2:68954834-68954853 None:intergenic 25.0%
! TACAATTTGAACATAACGTA+TGG + chr2_2:68954907-68954926 None:intergenic 25.0%
! TCTATTGAACAAAACAAGTA+TGG + chr2_2:68955427-68955446 None:intergenic 25.0%
!!! ATACTTGTTTTGTTCAATAG+AGG - chr2_2:68955426-68955445 Msa0267370:intron 25.0%
! TCTATATTCAATACTTAGTG+AGG + chr2_2:68955601-68955620 None:intergenic 25.0%
! ATAAAACCATGCAACTAAAT+TGG + chr2_2:68955691-68955710 None:intergenic 25.0%
! TAGACTAGAAGTTAAAAATG+AGG + chr2_2:68955813-68955832 None:intergenic 25.0%
! TTACAAATGTAACAAATCAG+AGG - chr2_2:68955837-68955856 Msa0267370:intron 25.0%
! TACAAATGTAACAAATCAGA+GGG - chr2_2:68955838-68955857 Msa0267370:intron 25.0%
!! AAAGAATTTGAAATGCAAGA+GGG + chr2_2:68956031-68956050 None:intergenic 25.0%
! TAATAATGTATTAAGCGTGA+AGG - chr2_2:68956396-68956415 Msa0267370:intron 25.0%
! TCATTGTATAGAGCTTATTA+CGG - chr2_2:68956431-68956450 Msa0267370:intron 25.0%
!!! CAAACACACACTTTTTTTTC+TGG - chr2_2:68952876-68952895 Msa0267370:three_prime_UTR 30.0%
GCATGGATATAAATAAGACT+TGG - chr2_2:68952996-68953015 Msa0267370:exon 30.0%
TAAGACTTGGAATTCTCAAT+TGG - chr2_2:68953009-68953028 Msa0267370:exon 30.0%
AAGACTTGGAATTCTCAATT+GGG - chr2_2:68953010-68953029 Msa0267370:exon 30.0%
TTCATGGTGTTTATATGTTG+TGG - chr2_2:68953060-68953079 Msa0267370:CDS 30.0%
!!! TTCACTTGCTGACTTTTTAT+TGG - chr2_2:68953141-68953160 Msa0267370:CDS 30.0%
!! GTTTTGTTCCAGTTTTTGAT+TGG - chr2_2:68953269-68953288 Msa0267370:CDS 30.0%
CAAACAAACCAATCAAAAAC+TGG + chr2_2:68953280-68953299 None:intergenic 30.0%
ATACTTCTATTGCAACACTA+TGG + chr2_2:68953517-68953536 None:intergenic 30.0%
! AGTGTTGCAATAGAAGTATA+AGG - chr2_2:68953518-68953537 Msa0267370:intron 30.0%
CATTCCAACTTCTATACTAT+TGG + chr2_2:68953657-68953676 None:intergenic 30.0%
ACAACTGTTAAGTAGCAAAA+TGG + chr2_2:68954235-68954254 None:intergenic 30.0%
TGGAAAGAAATCCTTTAGAT+CGG - chr2_2:68954291-68954310 Msa0267370:CDS 30.0%
! TTTCATAATCTGAAGTCAAG+AGG + chr2_2:68954368-68954387 None:intergenic 30.0%
TTGACTTCAGATTATGAAAC+AGG - chr2_2:68954369-68954388 Msa0267370:CDS 30.0%
TGTAAGTGTACAGTTAATCT+TGG + chr2_2:68954412-68954431 None:intergenic 30.0%
GTTTAAGCTTTGCATAGTAA+GGG + chr2_2:68955063-68955082 None:intergenic 30.0%
TGTTTAAGCTTTGCATAGTA+AGG + chr2_2:68955064-68955083 None:intergenic 30.0%
CTTAAACATGAGCAAAATTG+TGG - chr2_2:68955076-68955095 Msa0267370:five_prime_UTR 30.0%
TTTGACATATCGATGATTGA+AGG + chr2_2:68955218-68955237 None:intergenic 30.0%
TGCAGTTGCAGATAATAAAA+AGG + chr2_2:68955533-68955552 None:intergenic 30.0%
! ATTTCCTTAGTCTAAAGCTA+TGG - chr2_2:68955747-68955766 Msa0267370:intron 30.0%
!! TATACCATAGCTTTAGACTA+AGG + chr2_2:68955754-68955773 None:intergenic 30.0%
! AGTCTAAAGCTATGGTATAT+AGG - chr2_2:68955755-68955774 Msa0267370:intron 30.0%
!! ATACATAAGTCGCTATTTCT+AGG - chr2_2:68955931-68955950 Msa0267370:intron 30.0%
!! TACATAAGTCGCTATTTCTA+GGG - chr2_2:68955932-68955951 Msa0267370:intron 30.0%
! AAGAATTTGAAATGCAAGAG+GGG + chr2_2:68956030-68956049 None:intergenic 30.0%
! CAAAGAATTTGAAATGCAAG+AGG + chr2_2:68956032-68956051 None:intergenic 30.0%
CTCTTGCATTTCAAATTCTT+TGG - chr2_2:68956030-68956049 Msa0267370:intron 30.0%
!! TTTCAAATTCTTTGGCTTTC+AGG - chr2_2:68956038-68956057 Msa0267370:intron 30.0%
!!! TTTCAGGTTTTCAATTGCTA+TGG - chr2_2:68956054-68956073 Msa0267370:intron 30.0%
AAAGTTAGAGATAGTCAAGA+TGG - chr2_2:68956261-68956280 Msa0267370:intron 30.0%
!! AAGATGGACTAATAATTCAG+AGG - chr2_2:68956277-68956296 Msa0267370:intron 30.0%
!!! GAATCAAGCCCTTTATTTTT+CGG - chr2_2:68956299-68956318 Msa0267370:intron 30.0%
!!! AATCAAGCCCTTTATTTTTC+GGG - chr2_2:68956300-68956319 Msa0267370:intron 30.0%
CATTGTATAGAGCTTATTAC+GGG - chr2_2:68956432-68956451 Msa0267370:intron 30.0%
TAAAAGTGAAAGAAAGCTGA+AGG + chr2_2:68956575-68956594 None:intergenic 30.0%
!! GACTTCGTTTTTACATATAC+TGG + chr2_2:68956665-68956684 None:intergenic 30.0%
!! GTGTTTGTTGGTATCGATTA+TGG + chr2_2:68952863-68952882 None:intergenic 35.0%
!!! TTTGTTGTTTTTGACACGCA+TGG - chr2_2:68952979-68952998 Msa0267370:three_prime_UTR 35.0%
!!! GTTTTTTCCCTTGATTGGTA+TGG - chr2_2:68953089-68953108 Msa0267370:CDS 35.0%
TCCAAAACCATACCAATCAA+GGG + chr2_2:68953099-68953118 None:intergenic 35.0%
ATCCAAAACCATACCAATCA+AGG + chr2_2:68953100-68953119 None:intergenic 35.0%
! ATTCTATTTATGGCTTGCCT+TGG - chr2_2:68953178-68953197 Msa0267370:CDS 35.0%
TCATGACAAACAAGTATCCA+AGG + chr2_2:68953198-68953217 None:intergenic 35.0%
TCTGTGTCTTGTGAAATTGA+AGG - chr2_2:68953447-68953466 Msa0267370:intron 35.0%
! AAGTATAAGGCACTAAGATC+TGG - chr2_2:68953531-68953550 Msa0267370:intron 35.0%
! AGTATAAGGCACTAAGATCT+GGG - chr2_2:68953532-68953551 Msa0267370:intron 35.0%
! TTGCAAAGTACTTCAACTTG+AGG + chr2_2:68953618-68953637 None:intergenic 35.0%
CTTGCCAATAGTATAGAAGT+TGG - chr2_2:68953650-68953669 Msa0267370:intron 35.0%
AGTTGGAATGCTGTATTGTT+TGG - chr2_2:68953667-68953686 Msa0267370:intron 35.0%
TACATATCTCAGAAGACAAG+TGG + chr2_2:68953708-68953727 None:intergenic 35.0%
GAGATATGTAGTGATTAGTG+AGG - chr2_2:68953718-68953737 Msa0267370:intron 35.0%
TGATGTTGTTGTCATGTTTC+AGG - chr2_2:68953935-68953954 Msa0267370:intron 35.0%
TATCCTAGGGAAACTCTATA+AGG - chr2_2:68954077-68954096 Msa0267370:intron 35.0%
ATACCTTATAGAGTTTCCCT+AGG + chr2_2:68954083-68954102 None:intergenic 35.0%
TTCAGATTATGAAACAGGCA+AGG - chr2_2:68954374-68954393 Msa0267370:CDS 35.0%
CTTACAAAATCCACTAGTGT+TGG - chr2_2:68954426-68954445 Msa0267370:CDS 35.0%
TCAAGCGTCTATTCATGTTT+CGG - chr2_2:68954575-68954594 Msa0267370:intron 35.0%
GCAATAGCGCATTTGAAAAA+AGG + chr2_2:68954606-68954625 None:intergenic 35.0%
ACCATGATCTTGGGAATATA+AGG - chr2_2:68954960-68954979 Msa0267370:CDS 35.0%
ACCTTATATTCCCAAGATCA+TGG + chr2_2:68954964-68954983 None:intergenic 35.0%
! TCTTGGGAATATAAGGTGTT+TGG - chr2_2:68954967-68954986 Msa0267370:CDS 35.0%
TTGAGATGATCAACAAGAGA+TGG + chr2_2:68955160-68955179 None:intergenic 35.0%
ATCTCTTGTTGATCATCTCA+AGG - chr2_2:68955159-68955178 Msa0267370:intron 35.0%
! TGGCATTTTCAACTTCATGT+GGG + chr2_2:68955246-68955265 None:intergenic 35.0%
ATGAAGTTGAAAATGCCACA+TGG - chr2_2:68955248-68955267 Msa0267370:intron 35.0%
AATGTTAAACAGTACTGCAG+GGG + chr2_2:68955508-68955527 None:intergenic 35.0%
GAATGTTAAACAGTACTGCA+GGG + chr2_2:68955509-68955528 None:intergenic 35.0%
AGAATGTTAAACAGTACTGC+AGG + chr2_2:68955510-68955529 None:intergenic 35.0%
TTATTATCTGCAACTGCAAG+TGG - chr2_2:68955535-68955554 Msa0267370:intron 35.0%
AGATCACATGACATACACTT+AGG - chr2_2:68955618-68955637 Msa0267370:intron 35.0%
ACTCATCCAATTTAGTTGCA+TGG - chr2_2:68955682-68955701 Msa0267370:intron 35.0%
ATGGTATATAGGTTCTGCTT+TGG - chr2_2:68955766-68955785 Msa0267370:intron 35.0%
AAATGTAACAAATCAGAGGG+AGG - chr2_2:68955841-68955860 Msa0267370:intron 35.0%
! CAGTTTTTATGGCCTTCTTA+CGG - chr2_2:68956124-68956143 Msa0267370:intron 35.0%
TTCAGTTACAGCTTAGAAGT+CGG - chr2_2:68956177-68956196 Msa0267370:intron 35.0%
TTATATGGCAAGGAATTCCT+AGG - chr2_2:68956217-68956236 Msa0267370:intron 35.0%
GAGTTGAAATTGAGAATCAC+CGG - chr2_2:68956336-68956355 Msa0267370:intron 35.0%
ATCTTCTTTCCATATACGAC+CGG + chr2_2:68956358-68956377 None:intergenic 35.0%
! TGTTGTAAGATTTTGCTCTC+TGG - chr2_2:68956456-68956475 Msa0267370:intron 35.0%
TTCAATTCCACACATCTTAG+AGG - chr2_2:68956528-68956547 Msa0267370:five_prime_UTR 35.0%
AAACAACAACGTTGTTGTGC+TGG - chr2_2:68952819-68952838 Msa0267370:three_prime_UTR 40.0%
AAAAAGAGCTCCTGAAGTTG+CGG + chr2_2:68952908-68952927 None:intergenic 40.0%
! TCCCTTGATTGGTATGGTTT+TGG - chr2_2:68953095-68953114 Msa0267370:CDS 40.0%
!! TGGTTTGTTTGATGGTTCCA+AGG - chr2_2:68953289-68953308 Msa0267370:CDS 40.0%
!! GCTTTGAAAGAACACTACCT+TGG + chr2_2:68953309-68953328 None:intergenic 40.0%
! GCTAACTACACTTTTGATGC+TGG - chr2_2:68953327-68953346 Msa0267370:intron 40.0%
GTAGTGATTAGTGAGGCATA+TGG - chr2_2:68953725-68953744 Msa0267370:intron 40.0%
GATTAGTGAGGCATATGGAT+TGG - chr2_2:68953730-68953749 Msa0267370:intron 40.0%
!! GAGGCATATGGATTGGAATT+TGG - chr2_2:68953737-68953756 Msa0267370:intron 40.0%
!!! AGCGATGTTTTGAGTTTGAG+AGG - chr2_2:68953872-68953891 Msa0267370:intron 40.0%
!!! GCTTTTTTTTCTTGACTCGC+TGG - chr2_2:68953961-68953980 Msa0267370:intron 40.0%
TACTCGTGCTAGATTATCCT+AGG - chr2_2:68954063-68954082 Msa0267370:intron 40.0%
ACTCGTGCTAGATTATCCTA+GGG - chr2_2:68954064-68954083 Msa0267370:intron 40.0%
CCATTTCTGATCCGATCTAA+AGG + chr2_2:68954305-68954324 None:intergenic 40.0%
CCTTTAGATCGGATCAGAAA+TGG - chr2_2:68954302-68954321 Msa0267370:CDS 40.0%
! TCTTTGAAAATACCTCCTCC+CGG + chr2_2:68954330-68954349 None:intergenic 40.0%
! TCCACTAGTGTTGGATTGAA+TGG - chr2_2:68954435-68954454 Msa0267370:CDS 40.0%
TCCATTCAATCCAACACTAG+TGG + chr2_2:68954439-68954458 None:intergenic 40.0%
GTTGGATTGAATGGAAAGCA+CGG - chr2_2:68954444-68954463 Msa0267370:CDS 40.0%
CACGGAACTAGTTCAAAGAA+TGG - chr2_2:68954462-68954481 Msa0267370:CDS 40.0%
AATGGTGTGCATGACTTACT+CGG - chr2_2:68954480-68954499 Msa0267370:CDS 40.0%
CAAGCGTCTATTCATGTTTC+GGG - chr2_2:68954576-68954595 Msa0267370:intron 40.0%
TGTGTGTTTCAGTGTCCAAA+TGG - chr2_2:68954881-68954900 Msa0267370:CDS 40.0%
GAACATAACGTATGGCCATT+TGG + chr2_2:68954899-68954918 None:intergenic 40.0%
! GAATATAAGGTGTTTGGCTC+TGG - chr2_2:68954973-68954992 Msa0267370:CDS 40.0%
CTTGCAGATATCAGAGTCTA+GGG - chr2_2:68955023-68955042 Msa0267370:CDS 40.0%
TCATCTCAAGGATGAACACA+AGG - chr2_2:68955171-68955190 Msa0267370:intron 40.0%
! GTGGCATTTTCAACTTCATG+TGG + chr2_2:68955247-68955266 None:intergenic 40.0%
AGACAGTCAGATCAACAAAC+AGG + chr2_2:68955299-68955318 None:intergenic 40.0%
GCAAAGTAGCTACAACTTGA+TGG - chr2_2:68955868-68955887 Msa0267370:intron 40.0%
TTGAAGACGAGAAATCGCAT+TGG - chr2_2:68955892-68955911 Msa0267370:intron 40.0%
GCATTTCTGTTTGCACTTTG+AGG - chr2_2:68956080-68956099 Msa0267370:intron 40.0%
! TGGTACAGCTCCAGTTTTTA+TGG - chr2_2:68956113-68956132 Msa0267370:intron 40.0%
CGTAAGAAGGCCATAAAAAC+TGG + chr2_2:68956126-68956145 None:intergenic 40.0%
TATGGCCTTCTTACGGTTTA+TGG - chr2_2:68956131-68956150 Msa0267370:intron 40.0%
ATGGCCTTCTTACGGTTTAT+GGG - chr2_2:68956132-68956151 Msa0267370:intron 40.0%
CATATGGGCGCAAACTTATA+TGG - chr2_2:68956202-68956221 Msa0267370:intron 40.0%
!!! AAGCCCTTTATTTTTCGGGT+GGG - chr2_2:68956304-68956323 Msa0267370:intron 40.0%
ATCCCCACCCGAAAAATAAA+GGG + chr2_2:68956310-68956329 None:intergenic 40.0%
TATCCCCACCCGAAAAATAA+AGG + chr2_2:68956311-68956330 None:intergenic 40.0%
CTGGTAATTTCCGCAACTTC+AGG - chr2_2:68952895-68952914 Msa0267370:three_prime_UTR 45.0%
! TTTCTTGACTCGCTGGATCT+TGG - chr2_2:68953968-68953987 Msa0267370:intron 45.0%
!!! AAGTGTTGGCCAGAGACTTT+TGG - chr2_2:68954026-68954045 Msa0267370:intron 45.0%
!!! AGTGTTGGCCAGAGACTTTT+GGG - chr2_2:68954027-68954046 Msa0267370:intron 45.0%
ATGGTGTGCATGACTTACTC+GGG - chr2_2:68954481-68954500 Msa0267370:CDS 45.0%
GATGTATCCTCCAATTCACC+AGG - chr2_2:68954524-68954543 Msa0267370:intron 45.0%
ATTCCCAAGATCATGGTGAC+AGG + chr2_2:68954957-68954976 None:intergenic 45.0%
CCTAGACTCTGATATCTGCA+AGG + chr2_2:68955025-68955044 None:intergenic 45.0%
CCTTGCAGATATCAGAGTCT+AGG - chr2_2:68955022-68955041 Msa0267370:CDS 45.0%
CCAGCATAGGGACAATTGTA+TGG + chr2_2:68955109-68955128 None:intergenic 45.0%
CCATACAATTGTCCCTATGC+TGG - chr2_2:68955106-68955125 Msa0267370:five_prime_UTR 45.0%
CACAAGGTTGACATGCATGA+TGG - chr2_2:68955187-68955206 Msa0267370:intron 45.0%
ACTTACAGTGAGCATCCATG+TGG + chr2_2:68955266-68955285 None:intergenic 45.0%
GCTCACTGTAAGTGACTCAA+TGG - chr2_2:68955273-68955292 Msa0267370:intron 45.0%
ATCGCCCATAAACCGTAAGA+AGG + chr2_2:68956139-68956158 None:intergenic 45.0%
AGCTTAGAAGTCGGTGCATA+TGG - chr2_2:68956186-68956205 Msa0267370:intron 45.0%
GCTTAGAAGTCGGTGCATAT+GGG - chr2_2:68956187-68956206 Msa0267370:intron 45.0%
!!! CAAGCCCTTTATTTTTCGGG+TGG - chr2_2:68956303-68956322 Msa0267370:intron 45.0%
!!! AGCCCTTTATTTTTCGGGTG+GGG - chr2_2:68956305-68956324 Msa0267370:intron 45.0%
!!! TTTTTCGGGTGGGGATAAAC+AGG - chr2_2:68956314-68956333 Msa0267370:intron 45.0%
TGAGAATCACCGGTCGTATA+TGG - chr2_2:68956346-68956365 Msa0267370:intron 45.0%
TTCCACACATCTTAGAGGTG+AGG - chr2_2:68956533-68956552 Msa0267370:five_prime_UTR 45.0%
TCCACACATCTTAGAGGTGA+GGG - chr2_2:68956534-68956553 Msa0267370:five_prime_UTR 45.0%
CATTCACGCCCAAAAGTCTC+TGG + chr2_2:68954038-68954057 None:intergenic 50.0%
TCAAATGCACACGCAATGCG+AGG + chr2_2:68954137-68954156 None:intergenic 50.0%
GATCGGATCAGAAATGGCTC+CGG - chr2_2:68954308-68954327 Msa0267370:CDS 50.0%
ATCGGATCAGAAATGGCTCC+GGG - chr2_2:68954309-68954328 Msa0267370:CDS 50.0%
AAGCAGTGCACCTGGTGAAT+TGG + chr2_2:68954537-68954556 None:intergenic 50.0%
GAAATTGCAAGCAGTGCACC+TGG + chr2_2:68954545-68954564 None:intergenic 50.0%
GACAGGTGGGACAGAGATTA+TGG + chr2_2:68954940-68954959 None:intergenic 50.0%
CCAAGATCATGGTGACAGGT+GGG + chr2_2:68954953-68954972 None:intergenic 50.0%
CCACCTGTCACCATGATCTT+GGG - chr2_2:68954951-68954970 Msa0267370:CDS 50.0%
!! GTGTTTGGCTCTGGAGAAAG+TGG - chr2_2:68954982-68955001 Msa0267370:CDS 50.0%
!! TTTGGCTCTGGAGAAAGTGG+CGG - chr2_2:68954985-68955004 Msa0267370:CDS 50.0%
! GGAGAAAGTGGCGGAATCTT+TGG - chr2_2:68954994-68955013 Msa0267370:CDS 50.0%
GAGCACTCAGATCCAGCATA+GGG + chr2_2:68955121-68955140 None:intergenic 50.0%
AGATGGAATGTCGCCCATCA+CGG + chr2_2:68955143-68955162 None:intergenic 50.0%
! AAACAGTACTGCAGGGGCAT+TGG + chr2_2:68955502-68955521 None:intergenic 50.0%
TCTGCAACTGCAAGTGGTGT+TGG - chr2_2:68955541-68955560 Msa0267370:intron 50.0%
!! CACTTTGAGGCTTTCCAGCT+TGG - chr2_2:68956093-68956112 Msa0267370:five_prime_UTR 50.0%
AAACTGGAGCTGTACCAAGC+TGG + chr2_2:68956110-68956129 None:intergenic 50.0%
GGGCGCAAACTTATATGGCA+AGG - chr2_2:68956207-68956226 Msa0267370:intron 50.0%
!! ACCCTCACCTCTAAGATGTG+TGG + chr2_2:68956538-68956557 None:intergenic 50.0%
CAGTGCACCTGGTGAATTGG+AGG + chr2_2:68954534-68954553 None:intergenic 55.0%
CCCACCTGTCACCATGATCT+TGG - chr2_2:68954950-68954969 Msa0267370:CDS 55.0%
CCCAAGATCATGGTGACAGG+TGG + chr2_2:68954954-68954973 None:intergenic 55.0%
! GGAGCACTCAGATCCAGCAT+AGG + chr2_2:68955122-68955141 None:intergenic 55.0%
TGGATCTGAGTGCTCCGTGA+TGG - chr2_2:68955126-68955145 Msa0267370:intron 55.0%
GGATCTGAGTGCTCCGTGAT+GGG - chr2_2:68955127-68955146 Msa0267370:intron 55.0%
TGACTGTCGCGTATGCTCCT+AGG + chr2_2:68956237-68956256 None:intergenic 55.0%
GGATCAGAAATGGCTCCGGG+AGG - chr2_2:68954312-68954331 Msa0267370:CDS 60.0%
TCAGAAATGGCTCCGGGAGG+AGG - chr2_2:68954315-68954334 Msa0267370:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 68952701 68956693 68952701 ID=Msa0267370;Name=Msa0267370
chr2_2 mRNA 68952701 68956693 68952701 ID=Msa0267370-mRNA-1;Parent=Msa0267370;Name=Msa0267370-mRNA-1;_AED=0.07;_eAED=0.07;_QI=439|1|1|1|0.4|0.33|6|313|310
chr2_2 exon 68952701 68953334 68952701 ID=Msa0267370-mRNA-1:exon:21907;Parent=Msa0267370-mRNA-1
chr2_2 exon 68954115 68954501 68954115 ID=Msa0267370-mRNA-1:exon:21906;Parent=Msa0267370-mRNA-1
chr2_2 exon 68954849 68955143 68954849 ID=Msa0267370-mRNA-1:exon:21905;Parent=Msa0267370-mRNA-1
chr2_2 exon 68955296 68955437 68955296 ID=Msa0267370-mRNA-1:exon:21904;Parent=Msa0267370-mRNA-1
chr2_2 exon 68956084 68956113 68956084 ID=Msa0267370-mRNA-1:exon:21903;Parent=Msa0267370-mRNA-1
chr2_2 exon 68956497 68956693 68956497 ID=Msa0267370-mRNA-1:exon:21902;Parent=Msa0267370-mRNA-1
chr2_2 five_prime_UTR 68956497 68956693 68956497 ID=Msa0267370-mRNA-1:five_prime_utr;Parent=Msa0267370-mRNA-1
chr2_2 five_prime_UTR 68956084 68956113 68956084 ID=Msa0267370-mRNA-1:five_prime_utr;Parent=Msa0267370-mRNA-1
chr2_2 five_prime_UTR 68955296 68955437 68955296 ID=Msa0267370-mRNA-1:five_prime_utr;Parent=Msa0267370-mRNA-1
chr2_2 five_prime_UTR 68955074 68955143 68955074 ID=Msa0267370-mRNA-1:five_prime_utr;Parent=Msa0267370-mRNA-1
chr2_2 CDS 68954849 68955073 68954849 ID=Msa0267370-mRNA-1:cds;Parent=Msa0267370-mRNA-1
chr2_2 CDS 68954115 68954501 68954115 ID=Msa0267370-mRNA-1:cds;Parent=Msa0267370-mRNA-1
chr2_2 CDS 68953014 68953334 68953014 ID=Msa0267370-mRNA-1:cds;Parent=Msa0267370-mRNA-1
chr2_2 three_prime_UTR 68952701 68953013 68952701 ID=Msa0267370-mRNA-1:three_prime_utr;Parent=Msa0267370-mRNA-1
Gene Sequence

>Msa0267370

ATGGCTCCGGGAGGAGGTATTTTCAAAGAAGTTCTCGAGTCTCACCTCTTGACTTCAGATTATGAAACAGGCAAGGCTAAATCTGAAGCCAAGATTAACTGTACACTTACAAAATCCACTAGTGTTGGATTGAATGGAAAGCACGGAACTAGTTCAAAGAATGGTGTGCATGACTTACTCGGGTGCGCTGTCTGCAACAATTTGATGTATCCTCCAATTCACCAGTGTCCAAATGGCCATACGTTATGTTCAAATTGTAAGATTGAAGTCCATAATCTCTGTCCCACCTGTCACCATGATCTTGGGAATATAAGGTGTTTGGCTCTGGAGAAAGTGGCGGAATCTTTGGAGCTTCCTTGCAGATATCAGAGTCTAGGGTGTAATGATATTTTCCCTTACTATGCAAAGCTTAAACATGAGCAAAATTGTGGATTTCGTCCATACAATTGTCCCTATGCTGGATCTGAGTGCTCCGTGATGGGCGACATTCCATCTCTTGTTGATCATCTCAAGGATGAACACAAGGTTGACATGCATGATGGATTCACCTTCAATCATCGATATGTCAAAACAAACCCACATGAAGTTGAAAATGCCACATGGATGCTCACTGTTTTCAATTGCTATGGAAAGCATTTCTGTTTGCACTTTGAGGCTTTCCAGCTTGGTACAGCTCCAGTTTTTATGGCCTTCTTACGGTTTATGGGCGATGACAACGAATCAAAAAAATTCAGTTACAGCTTAGAAGTCGGTGCATATGGGCGCAAACTTATATGGCAAGGAATTCCTAGGAGCATACGCGACAGTCATAGTAAAGTTAGAGATAGTCAAGATGGACTAATAATTCAGAGGAATCAAGCCCTTTATTTTTCGGGTGGGGATAAACAGGAGTTGAAATTGAGAATCACCGGTCGTATATGGAAAGAAGATTGA

Protein sequence

>Msa0267370

MAPGGGIFKEVLESHLLTSDYETGKAKSEAKINCTLTKSTSVGLNGKHGTSSKNGVHDLLGCAVCNNLMYPPIHQCPNGHTLCSNCKIEVHNLCPTCHHDLGNIRCLALEKVAESLELPCRYQSLGCNDIFPYYAKLKHEQNCGFRPYNCPYAGSECSVMGDIPSLVDHLKDEHKVDMHDGFTFNHRYVKTNPHEVENATWMLTVFNCYGKHFCLHFEAFQLGTAPVFMAFLRFMGDDNESKKFSYSLEVGAYGRKLIWQGIPRSIRDSHSKVRDSQDGLIIQRNQALYFSGGDKQELKLRITGRIWKED*