AlfalfaGEDB | Msa0267370

M. sativa cultivar zhongmu-4 / Msa0267370

KEGG: K04506
GO: GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009894 GO:0009987 GO:0010506 GO:0016241 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0031323 GO:0031329 GO:0032446 GO:0033043 GO:0036211 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044087 GO:0044088 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046983 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051128 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901564 GO:1902115 GO:1902584 GO:2000070 GO:2000785
PFAM: PF03145.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0267370	XP_003625295.1	97.742	310	7	0	1	310	1	310	0.0	637

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0267370	sp\|Q9M2P4\|SINA2_ARATH	78.065	310	66	2	1	310	1	308	0.0	510

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0267370	G7KWA3	97.742	310	7	0	1	310	1	310	0.0	637

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa0267370	0.802712	4.926079e-49	-8.615850e-47
Msa0002230	Msa0267370	0.827747	1.318814e-54	-8.615850e-47
Msa0002240	Msa0267370	0.816927	4.295344e-52	-8.615850e-47
Msa0002460	Msa0267370	0.827885	1.221973e-54	-8.615850e-47
Msa0003720	Msa0267370	0.810019	1.418960e-50	-8.615850e-47
Msa0003890	Msa0267370	0.861881	7.510243e-64	-8.615850e-47
Msa0006070	Msa0267370	0.843065	1.761638e-58	-8.615850e-47
Msa0006110	Msa0267370	0.885371	8.617707e-72	-8.615850e-47
Msa0007440	Msa0267370	0.831932	1.261207e-55	-8.615850e-47
Msa0007990	Msa0267370	0.815847	7.493405e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0267370	MtrunA17_Chr7g0258941	97.742	310	7	0	1	310	1	310	0.0	637
Msa0267370	MtrunA17_Chr1g0175721	80.000	310	61	1	1	310	1	309	0.0	528
Msa0267370	MtrunA17_Chr3g0126851	72.662	278	71	1	37	309	33	310	2.14e-155	437
Msa0267370	MtrunA17_Chr1g0147041	74.906	267	67	0	43	309	52	318	4.87e-155	437
Msa0267370	MtrunA17_Chr8g0346801	72.263	274	75	1	36	309	22	294	1.02e-153	432
Msa0267370	MtrunA17_Chr3g0083571	73.333	270	68	1	40	309	38	303	9.21e-153	430
Msa0267370	MtrunA17_Chr7g0275701	73.432	271	69	1	39	309	44	311	5.50e-151	426
Msa0267370	MtrunA17_Chr8g0352701	68.929	280	79	2	38	309	24	303	2.46e-148	419
Msa0267370	MtrunA17_Chr5g0433631	25.912	274	189	6	33	306	7	266	5.00e-22	94.7
Msa0267370	MtrunA17_Chr4g0051351	28.972	214	139	5	58	270	96	297	2.75e-21	92.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0267370	AT3G58040.1	78.065	310	66	2	1	310	1	308	0.0	510
Msa0267370	AT3G58040.3	78.065	310	66	2	1	310	1	308	0.0	510
Msa0267370	AT2G41980.1	76.129	310	69	1	1	310	1	305	2.36e-180	500
Msa0267370	AT3G61790.1	76.357	258	61	0	52	309	53	310	3.74e-155	437
Msa0267370	AT4G27880.1	72.348	264	73	0	46	309	48	311	5.17e-151	426
Msa0267370	AT5G53360.1	75.369	203	50	0	107	309	15	217	8.14e-119	341
Msa0267370	AT5G53360.3	75.369	203	50	0	107	309	15	217	8.14e-119	341
Msa0267370	AT3G58040.2	74.146	205	51	2	1	205	1	203	9.94e-109	315
Msa0267370	AT3G13672.1	50.495	202	94	2	111	309	13	211	1.20e-70	218
Msa0267370	AT3G13672.2	44.978	229	93	3	111	309	13	238	6.00e-65	204

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Find 101 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGAAGTCACAATTCAA+AGG	0.583618	2_2:-68952698	None:intergenic
AAACAACAACGTTGTTGTGC+TGG	0.485077	2_2:-68956553	Msa0267370:five_prime_UTR
AAACTCAAAGCTAAAGAAAT+TGG	0.250381	2_2:-68955101	Msa0267370:five_prime_UTR
AAACTGGAGCTGTACCAAGC+TGG	0.527478	2_2:+68953265	None:intergenic
AAAGTTAGAGATAGTCAAGA+TGG	0.510900	2_2:-68953111	Msa0267370:CDS
AAGATGGACTAATAATTCAG+AGG	0.639261	2_2:-68953095	Msa0267370:CDS
AAGCAGTGCACCTGGTGAAT+TGG	0.478324	2_2:+68954838	None:intergenic
AAGTGTTGGCCAGAGACTTT+TGG	0.299363	2_2:-68955346	Msa0267370:five_prime_UTR
AATGGTGTGCATGACTTACT+CGG	0.545764	2_2:-68954892	Msa0267370:CDS
ACCATGATCTTGGGAATATA+AGG	0.354435	2_2:-68954412	Msa0267370:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCATGGATATAAATAAGACT+TGG	-	chr2_2:68952996-68953015	Msa0267370:exon	30.0%
TAAGACTTGGAATTCTCAAT+TGG	-	chr2_2:68953009-68953028	Msa0267370:exon	30.0%
AAGACTTGGAATTCTCAATT+GGG	-	chr2_2:68953010-68953029	Msa0267370:exon	30.0%
TTCATGGTGTTTATATGTTG+TGG	-	chr2_2:68953060-68953079	Msa0267370:CDS	30.0%
CAAACAAACCAATCAAAAAC+TGG	+	chr2_2:68953280-68953299	None:intergenic	30.0%
ATACTTCTATTGCAACACTA+TGG	+	chr2_2:68953517-68953536	None:intergenic	30.0%
CATTCCAACTTCTATACTAT+TGG	+	chr2_2:68953657-68953676	None:intergenic	30.0%
ACAACTGTTAAGTAGCAAAA+TGG	+	chr2_2:68954235-68954254	None:intergenic	30.0%
TGGAAAGAAATCCTTTAGAT+CGG	-	chr2_2:68954291-68954310	Msa0267370:CDS	30.0%
TTGACTTCAGATTATGAAAC+AGG	-	chr2_2:68954369-68954388	Msa0267370:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	68952701	68956693	68952701	ID=Msa0267370;Name=Msa0267370
chr2_2	mRNA	68952701	68956693	68952701	ID=Msa0267370-mRNA-1;Parent=Msa0267370;Name=Msa0267370-mRNA-1;_AED=0.07;_eAED=0.07;_QI=439\|1\|1\|1\|0.4\|0.33\|6\|313\|310
chr2_2	exon	68952701	68953334	68952701	ID=Msa0267370-mRNA-1:exon:21907;Parent=Msa0267370-mRNA-1
chr2_2	exon	68954115	68954501	68954115	ID=Msa0267370-mRNA-1:exon:21906;Parent=Msa0267370-mRNA-1
chr2_2	exon	68954849	68955143	68954849	ID=Msa0267370-mRNA-1:exon:21905;Parent=Msa0267370-mRNA-1
chr2_2	exon	68955296	68955437	68955296	ID=Msa0267370-mRNA-1:exon:21904;Parent=Msa0267370-mRNA-1
chr2_2	exon	68956084	68956113	68956084	ID=Msa0267370-mRNA-1:exon:21903;Parent=Msa0267370-mRNA-1
chr2_2	exon	68956497	68956693	68956497	ID=Msa0267370-mRNA-1:exon:21902;Parent=Msa0267370-mRNA-1
chr2_2	five_prime_UTR	68956497	68956693	68956497	ID=Msa0267370-mRNA-1:five_prime_utr;Parent=Msa0267370-mRNA-1
chr2_2	five_prime_UTR	68956084	68956113	68956084	ID=Msa0267370-mRNA-1:five_prime_utr;Parent=Msa0267370-mRNA-1
chr2_2	five_prime_UTR	68955296	68955437	68955296	ID=Msa0267370-mRNA-1:five_prime_utr;Parent=Msa0267370-mRNA-1
chr2_2	five_prime_UTR	68955074	68955143	68955074	ID=Msa0267370-mRNA-1:five_prime_utr;Parent=Msa0267370-mRNA-1
chr2_2	CDS	68954849	68955073	68954849	ID=Msa0267370-mRNA-1:cds;Parent=Msa0267370-mRNA-1
chr2_2	CDS	68954115	68954501	68954115	ID=Msa0267370-mRNA-1:cds;Parent=Msa0267370-mRNA-1
chr2_2	CDS	68953014	68953334	68953014	ID=Msa0267370-mRNA-1:cds;Parent=Msa0267370-mRNA-1
chr2_2	three_prime_UTR	68952701	68953013	68952701	ID=Msa0267370-mRNA-1:three_prime_utr;Parent=Msa0267370-mRNA-1

Gene Sequence

>Msa0267370

ATGGCTCCGGGAGGAGGTATTTTCAAAGAAGTTCTCGAGTCTCACCTCTTGACTTCAGATTATGAAACAGGCAAGGCTAAATCTGAAGCCAAGATTAACTGTACACTTACAAAATCCACTAGTGTTGGATTGAATGGAAAGCACGGAACTAGTTCAAAGAATGGTGTGCATGACTTACTCGGGTGCGCTGTCTGCAACAATTTGATGTATCCTCCAATTCACCAGTGTCCAAATGGCCATACGTTATGTTCAAATTGTAAGATTGAAGTCCATAATCTCTGTCCCACCTGTCACCATGATCTTGGGAATATAAGGTGTTTGGCTCTGGAGAAAGTGGCGGAATCTTTGGAGCTTCCTTGCAGATATCAGAGTCTAGGGTGTAATGATATTTTCCCTTACTATGCAAAGCTTAAACATGAGCAAAATTGTGGATTTCGTCCATACAATTGTCCCTATGCTGGATCTGAGTGCTCCGTGATGGGCGACATTCCATCTCTTGTTGATCATCTCAAGGATGAACACAAGGTTGACATGCATGATGGATTCACCTTCAATCATCGATATGTCAAAACAAACCCACATGAAGTTGAAAATGCCACATGGATGCTCACTGTTTTCAATTGCTATGGAAAGCATTTCTGTTTGCACTTTGAGGCTTTCCAGCTTGGTACAGCTCCAGTTTTTATGGCCTTCTTACGGTTTATGGGCGATGACAACGAATCAAAAAAATTCAGTTACAGCTTAGAAGTCGGTGCATATGGGCGCAAACTTATATGGCAAGGAATTCCTAGGAGCATACGCGACAGTCATAGTAAAGTTAGAGATAGTCAAGATGGACTAATAATTCAGAGGAATCAAGCCCTTTATTTTTCGGGTGGGGATAAACAGGAGTTGAAATTGAGAATCACCGGTCGTATATGGAAAGAAGATTGA

Protein sequence

>Msa0267370

MAPGGGIFKEVLESHLLTSDYETGKAKSEAKINCTLTKSTSVGLNGKHGTSSKNGVHDLLGCAVCNNLMYPPIHQCPNGHTLCSNCKIEVHNLCPTCHHDLGNIRCLALEKVAESLELPCRYQSLGCNDIFPYYAKLKHEQNCGFRPYNCPYAGSECSVMGDIPSLVDHLKDEHKVDMHDGFTFNHRYVKTNPHEVENATWMLTVFNCYGKHFCLHFEAFQLGTAPVFMAFLRFMGDDNESKKFSYSLEVGAYGRKLIWQGIPRSIRDSHSKVRDSQDGLIIQRNQALYFSGGDKQELKLRITGRIWKED*