AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1335860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1335860 MtrunA17_Chr3g0097801 95.879 364 12 1 1 361 174 537 0.0 705
Msa1335860 MtrunA17_Chr2g0279961 31.884 345 194 10 6 339 269 583 4.99e-26 109
Msa1335860 MtrunA17_Chr3g0130801 27.841 352 198 10 4 339 337 648 5.80e-23 100
Msa1335860 MtrunA17_Chr8g0384851 28.297 364 204 12 4 350 274 597 2.72e-19 89.4
Msa1335860 MtrunA17_Chr8g0377701 36.301 146 87 3 6 148 184 326 6.48e-17 82.0
Msa1335860 MtrunA17_Chr8g0385461 39.623 106 59 2 4 106 293 396 1.39e-16 81.3
Msa1335860 MtrunA17_Chr1g0191741 54.054 74 31 1 6 76 101 174 2.17e-16 80.1
Msa1335860 MtrunA17_Chr8g0377651 32.653 196 116 5 6 188 183 375 2.36e-16 80.1
Msa1335860 MtrunA17_Chr4g0037521 25.581 387 200 13 6 356 175 509 4.70e-15 76.3
Msa1335860 MtrunA17_Chr8g0377691 34.932 146 89 3 6 148 183 325 1.82e-14 74.3
Msa1335860 MtrunA17_Chr8g0377681 24.870 386 197 16 6 355 180 508 2.56e-14 73.9
Msa1335860 MtrunA17_Chr8g0377641 32.877 146 92 3 6 148 180 322 1.52e-13 71.6
Msa1335860 MtrunA17_Chr4g0050371 48.000 75 36 1 6 77 147 221 1.05e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1335860 AT3G25660.1 78.889 360 73 1 2 358 176 535 0.0 548
Msa1335860 AT5G64440.1 28.857 350 198 11 3 336 267 581 4.77e-26 109
Msa1335860 AT5G07360.1 42.157 102 56 1 4 102 335 436 3.94e-17 83.2
Msa1335860 AT5G07360.3 42.157 102 56 1 4 102 335 436 3.94e-17 83.2
Msa1335860 AT1G08980.1 53.165 79 34 1 6 81 102 180 3.40e-16 79.7
Msa1335860 AT5G07360.2 42.157 102 49 2 4 102 335 429 1.35e-15 78.6
Msa1335860 AT4G34880.2 27.324 355 201 13 6 344 187 500 1.39e-14 75.1
Msa1335860 AT5G09420.1 24.024 333 205 11 6 323 145 444 3.76e-11 64.7

Find 122 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAATTGATGAAATTATTTA+TGG 0.092943 tig0000715:+56021 None:intergenic
TAAGCAATCATTCTACATTT+TGG 0.172632 tig0000715:-56048 Msa1335860:three_prime_UTR
CATTATAAGGAATAGCTTTA+AGG 0.196302 tig0000715:-58086 Msa1335860:CDS
GACATTACAGGCAAATATTT+TGG 0.199151 tig0000715:-55925 Msa1335860:three_prime_UTR
CCTTCAGCTGCTTATAAAAT+TGG 0.204129 tig0000715:-58022 Msa1335860:intron
CTTGATGCCATTGGCTGCTT+TGG 0.241283 tig0000715:-59589 Msa1335860:CDS
GGTTCATCGGTCGCTGATGC+TGG 0.256956 tig0000715:-59568 Msa1335860:CDS
TGGCCAAGGCAGGTATGTTT+AGG 0.273209 tig0000715:-55986 Msa1335860:three_prime_UTR
CCAACCCGTGGGATGTTTCC+AGG 0.279284 tig0000715:-59792 Msa1335860:CDS
CTTAAAGCTATTCCTTATAA+TGG 0.283232 tig0000715:+58087 None:intergenic
CCCTTGAAAGGTCTGAGAAT+TGG 0.320152 tig0000715:-59223 Msa1335860:CDS
TGGTCACACATGACTGAATC+TGG 0.327436 tig0000715:-55905 Msa1335860:three_prime_UTR
ATCTGTAATTCTCAAGAGTT+TGG 0.333314 tig0000715:+56112 None:intergenic
CCTGTTGGCCTGCAAATGAT+TGG 0.334314 tig0000715:-57060 Msa1335860:CDS
TATGGACGTGTCTCAAGATT+TGG 0.338893 tig0000715:-59634 Msa1335860:CDS
TGTCTCGCTATGATGGTATT+AGG 0.343270 tig0000715:-58894 Msa1335860:intron
TTACAGTTTATCAATCTTGC+TGG 0.346698 tig0000715:+55741 None:intergenic
TACCTAATAGAAGGAAAATA+TGG 0.347308 tig0000715:-55952 Msa1335860:three_prime_UTR
AGCTGATAGCGTTGAATAAC+GGG 0.356199 tig0000715:-56073 Msa1335860:exon
CCATGTGGATTTATTGAGAA+TGG 0.359058 tig0000715:-57096 Msa1335860:CDS
CATTGGCTGCTTTGGTTCAT+CGG 0.365093 tig0000715:-59581 Msa1335860:CDS
AAATATGGTTTGGACATTAC+AGG 0.367134 tig0000715:-55937 Msa1335860:three_prime_UTR
TGTCTCAAGATTTGGACTTA+TGG 0.369848 tig0000715:-59626 Msa1335860:CDS
GATTCCCGAGCCAAAGGGTT+AGG 0.376718 tig0000715:-58684 Msa1335860:CDS
ACCAATTCTCAGACCTTTCA+AGG 0.382570 tig0000715:+59222 None:intergenic
GGCCAAGGCAGGTATGTTTA+GGG 0.387724 tig0000715:-55985 Msa1335860:three_prime_UTR
ATGCTGCACCAATCATTTGC+AGG 0.388800 tig0000715:+57052 None:intergenic
AACAGGTGAGAACCATTATA+AGG 0.404504 tig0000715:-58099 Msa1335860:intron
ATACTTCTCCATGCAATTGC+TGG 0.405414 tig0000715:-59544 Msa1335860:CDS
AACTGCAGCTGCCGATCCTC+CGG 0.421581 tig0000715:+59753 None:intergenic
CCAATCATTTGCAGGCCAAC+AGG 0.424765 tig0000715:+57060 None:intergenic
GTTCAGTGTTACCTAATAGA+AGG 0.429695 tig0000715:-55961 Msa1335860:three_prime_UTR
CACCATCTTCAATAGTTTCA+CGG 0.431389 tig0000715:+59194 None:intergenic
TGGGATGTTTCCAGGGTGCC+AGG 0.440289 tig0000715:-59784 Msa1335860:CDS
GATCCTCCGGATGATCCTCC+TGG 0.440465 tig0000715:+59766 None:intergenic
TACAGATTTGTTCCACCAAT+CGG 0.443443 tig0000715:-56096 Msa1335860:CDS
AATAGAAGGAAAATATGGTT+TGG 0.443863 tig0000715:-55947 Msa1335860:three_prime_UTR
CTAGCTCATCAGCATAAACT+TGG 0.445051 tig0000715:+58721 None:intergenic
GTAGGTTTGAAGCCAACATA+TGG 0.451615 tig0000715:-59652 Msa1335860:intron
GATGAGCTAGACTCTCTCTA+TGG 0.453282 tig0000715:-58708 Msa1335860:CDS
TTAAAATGAGATAGAAAGTT+GGG 0.454413 tig0000715:+59271 None:intergenic
GAGCTGATAGCGTTGAATAA+CGG 0.457511 tig0000715:-56074 Msa1335860:exon
GACAATGTGGTGGCCAAGGC+AGG 0.457889 tig0000715:-55996 Msa1335860:three_prime_UTR
GGGACATATGCCCTTTCAGC+TGG 0.466577 tig0000715:-58487 Msa1335860:CDS
TAGGTAAATGTCAACCTAGC+TGG 0.467203 tig0000715:-57138 Msa1335860:CDS
AAAACAAAACCAACTAGAAA+AGG 0.473782 tig0000715:+55822 None:intergenic
TACCTCAGAACCTAACCCTT+TGG 0.473794 tig0000715:+58674 None:intergenic
TTGAGGGGATCACCAGCCAT+TGG 0.474759 tig0000715:-55791 Msa1335860:three_prime_UTR
CACCCTAAACATACCTGCCT+TGG 0.475526 tig0000715:+55983 None:intergenic
GTATCGTTGGGAAGTGATAC+TGG 0.476953 tig0000715:-59712 Msa1335860:CDS
TCCAACTTGTCTCGCTATGA+TGG 0.480589 tig0000715:-58901 Msa1335860:CDS
CGGCAGCTGCAGTTTCTGCC+AGG 0.482964 tig0000715:-59744 Msa1335860:CDS
GTTAAAATGAGATAGAAAGT+TGG 0.486758 tig0000715:+59270 None:intergenic
GTTCATCGGTCGCTGATGCT+GGG 0.490398 tig0000715:-59567 Msa1335860:CDS
AGGGTGCCAGGAGGATCATC+CGG 0.492708 tig0000715:-59772 Msa1335860:CDS
GAATAGCTTTAAGGAAGCAC+TGG 0.494423 tig0000715:-58077 Msa1335860:CDS
ATTGAAGATGGTGTTGATGC+TGG 0.494844 tig0000715:-59184 Msa1335860:CDS
CAACGATACAACACATTGCC+TGG 0.499311 tig0000715:+59726 None:intergenic
TGCTGGCAACCCAAGCGAAA+AGG 0.500977 tig0000715:+58954 None:intergenic
TAAGCAGCTGAAGGAGCTGC+AGG 0.503173 tig0000715:+58031 None:intergenic
AGAACCTAACCCTTTGGCTC+GGG 0.508452 tig0000715:+58680 None:intergenic
CCTAGCTGGACTACCTGCCT+TGG 0.511239 tig0000715:-57124 Msa1335860:CDS
ACGCTATCAGCTCCGATTGG+TGG 0.515905 tig0000715:+56084 None:intergenic
TTTATTGAGAATGGACTGAC+AGG 0.516802 tig0000715:-57087 Msa1335860:CDS
ATCATAGTAACCAGCTGAAA+GGG 0.518202 tig0000715:+58477 None:intergenic
TAATGACAATGTGGTGGCCA+AGG 0.524310 tig0000715:-56000 Msa1335860:three_prime_UTR
AGGAGGATCATCCGGAGGAT+CGG 0.529125 tig0000715:-59764 Msa1335860:CDS
TTGGAAAGTAAGCCCTTGAA+AGG 0.529759 tig0000715:-59235 Msa1335860:CDS
ACTCTTGTAATTTACTGTTG+AGG 0.534483 tig0000715:-55711 Msa1335860:three_prime_UTR
ACCATCATAGCGAGACAAGT+TGG 0.538119 tig0000715:+58900 None:intergenic
CATCATAGTAACCAGCTGAA+AGG 0.540452 tig0000715:+58476 None:intergenic
ATGGAGATTCCCGAGCCAAA+GGG 0.540501 tig0000715:-58689 Msa1335860:CDS
CCAATTCTCAGACCTTTCAA+GGG 0.542138 tig0000715:+59223 None:intergenic
CAACCCGTGGGATGTTTCCA+GGG 0.543202 tig0000715:-59791 Msa1335860:CDS
TATCATGACCAGCAATTGCA+TGG 0.543365 tig0000715:+59536 None:intergenic
CTTGAGACACGTCCATATGT+TGG 0.543787 tig0000715:+59640 None:intergenic
CAGAACCTAACCCTTTGGCT+CGG 0.546221 tig0000715:+58679 None:intergenic
TGGTGGAAGTGTGAGGCAGC+CGG 0.546383 tig0000715:-59692 Msa1335860:CDS
GCAAGATTGATAAACTGTAA+AGG 0.547651 tig0000715:-55738 Msa1335860:three_prime_UTR
GATCCTTTGGCTATGTATGC+TGG 0.549623 tig0000715:-57901 Msa1335860:CDS
ATCCGTGAAACTATTGAAGA+TGG 0.552239 tig0000715:-59196 Msa1335860:CDS
CAGGCAATGTGTTGTATCGT+TGG 0.553276 tig0000715:-59725 Msa1335860:CDS
GGACTGACAGGGCTTCCTGT+TGG 0.555054 tig0000715:-57075 Msa1335860:CDS
CCACATGGTAAAACCAAGGC+AGG 0.555507 tig0000715:+57111 None:intergenic
AACTCATACTTGCTTACTTG+AGG 0.556320 tig0000715:+59501 None:intergenic
GCAGGGAGAGCTTCTGAGAG+TGG 0.556597 tig0000715:-56148 Msa1335860:intron
TATGGAGATTCCCGAGCCAA+AGG 0.558471 tig0000715:-58690 Msa1335860:CDS
CAGGGAGAGCTTCTGAGAGT+GGG 0.560463 tig0000715:-56147 Msa1335860:CDS
ACATTCTCAATTTCAAAGAG+TGG 0.561387 tig0000715:+55862 None:intergenic
GATTGGTGCAGCATTTAATG+AGG 0.564316 tig0000715:-57043 Msa1335860:intron
ATATTACAAACGAGCACAGC+AGG 0.567788 tig0000715:-58452 Msa1335860:intron
CCAAGGCAGGTAGTCCAGCT+AGG 0.568026 tig0000715:+57124 None:intergenic
AGCCAAAGGGTTAGGTTCTG+AGG 0.574572 tig0000715:-58676 Msa1335860:intron
AGGCAATGTGTTGTATCGTT+GGG 0.585368 tig0000715:-59724 Msa1335860:CDS
AGCAGCTGAAGGAGCTGCAG+GGG 0.585773 tig0000715:+58033 None:intergenic
GGATGATCCTCCTGGCACCC+TGG 0.587626 tig0000715:+59774 None:intergenic
TCAACGCTATCAGCTCCGAT+TGG 0.591245 tig0000715:+56081 None:intergenic
GGCACCCTGGAAACATCCCA+CGG 0.592300 tig0000715:+59787 None:intergenic
TCATACTTGCTTACTTGAGG+TGG 0.595066 tig0000715:+59504 None:intergenic
GCGTCATCACTTGATGCCAT+TGG 0.595721 tig0000715:-59598 Msa1335860:CDS
AATAGGTGACTGCCAACCCG+TGG 0.597933 tig0000715:-59804 Msa1335860:intron
CGATGAACCAAAGCAGCCAA+TGG 0.598497 tig0000715:+59582 None:intergenic
CCTGGAAACATCCCACGGGT+TGG 0.599862 tig0000715:+59792 None:intergenic
ACAAATGATAAACCAATGGC+TGG 0.604990 tig0000715:+55779 None:intergenic
TCAATTTAATGACAATGTGG+TGG 0.608955 tig0000715:-56006 Msa1335860:three_prime_UTR
AAAGCGAGGACATAGTATGC+TGG 0.610724 tig0000715:+58937 None:intergenic
TCATCAATTTAATGACAATG+TGG 0.611286 tig0000715:-56009 Msa1335860:three_prime_UTR
TGGTACAAATGATAAACCAA+TGG 0.612930 tig0000715:+55775 None:intergenic
GCACCCTGGAAACATCCCAC+GGG 0.614008 tig0000715:+59788 None:intergenic
GGCAACCCAAGCGAAAAGGA+TGG 0.619210 tig0000715:+58958 None:intergenic
AAGCAGCTGAAGGAGCTGCA+GGG 0.619430 tig0000715:+58032 None:intergenic
ATTAGGATGCTCTGTGAACG+AGG 0.648039 tig0000715:-59119 Msa1335860:intron
CCATTCTCAATAAATCCACA+TGG 0.649598 tig0000715:+57096 None:intergenic
TCACCAGCATACATAGCCAA+AGG 0.651194 tig0000715:+57898 None:intergenic
TTATTGAGAATGGACTGACA+GGG 0.661333 tig0000715:-57086 Msa1335860:CDS
ATAGGTGACTGCCAACCCGT+GGG 0.663939 tig0000715:-59803 Msa1335860:intron
AAGATGATTCAGACAAAGCG+AGG 0.664996 tig0000715:+58923 None:intergenic
GATGTTTCCAGGGTGCCAGG+AGG 0.670862 tig0000715:-59781 Msa1335860:CDS
AAATCCACATGGTAAAACCA+AGG 0.672604 tig0000715:+57107 None:intergenic
GTGATACTGGTGGAAGTGTG+AGG 0.689164 tig0000715:-59699 Msa1335860:CDS
GTGCCAGGAGGATCATCCGG+AGG 0.694596 tig0000715:-59769 Msa1335860:CDS
TCGTTGGGAAGTGATACTGG+TGG 0.795744 tig0000715:-59709 Msa1335860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATCTAAAAACTAAAAAATA+AGG + tig0000715:55775-55794 None:intergenic 10.0%
!!! TGATTAATTAAGATATTTTT+TGG + tig0000715:58872-58891 None:intergenic 10.0%
!!! TTCTATTTTTATTTTTTTCA+AGG + tig0000715:60303-60322 None:intergenic 10.0%
!! TAAATTGATGAAATTATTTA+TGG + tig0000715:60480-60499 None:intergenic 10.0%
!! TACTAACTTAGAAATATAAA+AGG - tig0000715:55950-55969 Msa1335860:three_prime_UTR 15.0%
!! ATAATAGTATATTGGATTTA+TGG + tig0000715:55983-56002 None:intergenic 15.0%
!!! CATTAATAAATCATTTTGTT+TGG - tig0000715:57719-57738 Msa1335860:intron 15.0%
!!! ACTTTATTTTATGTATTTCT+TGG - tig0000715:58077-58096 Msa1335860:CDS 15.0%
!!! TTTCATTTATTTTAGAAGTT+TGG - tig0000715:58344-58363 Msa1335860:intron 15.0%
!!! TTCATTTATTTTAGAAGTTT+GGG - tig0000715:58345-58364 Msa1335860:intron 15.0%
!! AATTGATTATCTATTATCTA+AGG + tig0000715:58842-58861 None:intergenic 15.0%
!! AATAATAACAACATGAATAT+AGG - tig0000715:59100-59119 Msa1335860:intron 15.0%
!! CATATATGTATTTATTGTAT+AGG + tig0000715:59180-59199 None:intergenic 15.0%
!!! AACAATTTTTAAACTTTCTT+TGG + tig0000715:59684-59703 None:intergenic 15.0%
!!! TTATTTTTTTCAAGGAAAAA+AGG + tig0000715:60295-60314 None:intergenic 15.0%
!! GATGTATTCAATGTTAATAA+TGG - tig0000715:55811-55830 Msa1335860:three_prime_UTR 20.0%
!! GATGTTAGATAATAGTATAT+TGG + tig0000715:55991-56010 None:intergenic 20.0%
!! TAACATCTAGTATTCAATAT+GGG - tig0000715:56004-56023 Msa1335860:three_prime_UTR 20.0%
!! TACTAATATTACAAACAACA+GGG + tig0000715:56172-56191 None:intergenic 20.0%
!! TTACTAATATTACAAACAAC+AGG + tig0000715:56173-56192 None:intergenic 20.0%
!! TATTAGTAATGAATATGAGA+AGG - tig0000715:56184-56203 Msa1335860:intron 20.0%
!! AACTTATTCCAGTTATAAAT+GGG + tig0000715:56647-56666 None:intergenic 20.0%
!! AAACTTATTCCAGTTATAAA+TGG + tig0000715:56648-56667 None:intergenic 20.0%
!! TTTAGAAATCTTACAACATT+TGG + tig0000715:57039-57058 None:intergenic 20.0%
!!! AATCAATAATGTAATTTGTC+AGG - tig0000715:57199-57218 Msa1335860:intron 20.0%
!! TTAAAATGAGATAGAAAGTT+GGG + tig0000715:57230-57249 None:intergenic 20.0%
!! AAATGAAAAGGGTTAAATAA+CGG + tig0000715:57495-57514 None:intergenic 20.0%
!! ACAGAATAAAATATTGTGTT+CGG + tig0000715:57687-57706 None:intergenic 20.0%
!! AAATACAATACGTACAAAAT+TGG + tig0000715:57938-57957 None:intergenic 20.0%
!!! TTCTCTTTTTAATACATTTC+AGG - tig0000715:57968-57987 Msa1335860:intron 20.0%
!!! TTATTTTATGTATTTCTTGG+TGG - tig0000715:58080-58099 Msa1335860:CDS 20.0%
!!! TATTTTATGTATTTCTTGGT+GGG - tig0000715:58081-58100 Msa1335860:CDS 20.0%
!! AAGTATTTCATTCTTCTTAT+CGG - tig0000715:58635-58654 Msa1335860:intron 20.0%
!! TTAATTAATCAATAAGTGCA+GGG - tig0000715:58881-58900 Msa1335860:intron 20.0%
!! TGTTGAATTATAGAAAATAG+AGG - tig0000715:59015-59034 Msa1335860:intron 20.0%
!!! TAATGTTTGCCTTTATTTAT+TGG - tig0000715:59322-59341 Msa1335860:intron 20.0%
!!! TTTACATTTTGCTTTAGATT+GGG - tig0000715:59952-59971 Msa1335860:intron 20.0%
!!! AAAAATAGAATCATCCTTTT+TGG - tig0000715:60313-60332 Msa1335860:intron 20.0%
!!! TTTTGTTTTTACCTTTTTTG+AGG - tig0000715:60690-60709 Msa1335860:intron 20.0%
!!! TTTGTTTTTACCTTTTTTGA+GGG - tig0000715:60691-60710 Msa1335860:intron 20.0%
!! TGTATTTTTCTTTTCCAGTT+TGG - tig0000715:55708-55727 Msa1335860:three_prime_UTR 25.0%
! ATAATGGCGATATCAAAATA+AGG - tig0000715:55827-55846 Msa1335860:three_prime_UTR 25.0%
! TAATGGCGATATCAAAATAA+GGG - tig0000715:55828-55847 Msa1335860:three_prime_UTR 25.0%
! TATATTGGATTTATGGTATC+GGG + tig0000715:55976-55995 None:intergenic 25.0%
! GTATATTGGATTTATGGTAT+CGG + tig0000715:55977-55996 None:intergenic 25.0%
! CTAACATCTAGTATTCAATA+TGG - tig0000715:56003-56022 Msa1335860:three_prime_UTR 25.0%
! TAATCTCTCTCTAAATCTAA+TGG + tig0000715:56435-56454 None:intergenic 25.0%
! GATGCATATATTCATTCAAT+AGG - tig0000715:56677-56696 Msa1335860:intron 25.0%
! TAAATTCTCGTTATTAGCAA+TGG - tig0000715:57055-57074 Msa1335860:CDS 25.0%
! ATAGTCTTTGTTCAATATGA+TGG - tig0000715:57096-57115 Msa1335860:CDS 25.0%
! GTTCATTGTTGAAAAGAAAT+TGG + tig0000715:57179-57198 None:intergenic 25.0%
! GTTAAAATGAGATAGAAAGT+TGG + tig0000715:57231-57250 None:intergenic 25.0%
!! AGTTAATGGACAAATGAAAA+GGG + tig0000715:57506-57525 None:intergenic 25.0%
!! AAGTTAATGGACAAATGAAA+AGG + tig0000715:57507-57526 None:intergenic 25.0%
! TCATTTGTCCATTAACTTAA+AGG - tig0000715:57509-57528 Msa1335860:intron 25.0%
!!! ATAAATCATTTTGTTTGGCT+TGG - tig0000715:57724-57743 Msa1335860:intron 25.0%
! ATCCTTCTCAATTTCAAATT+TGG - tig0000715:57858-57877 Msa1335860:intron 25.0%
!! TTGGATCATTTCTTTTATAC+AGG + tig0000715:57919-57938 None:intergenic 25.0%
!!! GTGAAAATGAGAATTTTGAT+GGG - tig0000715:57990-58009 Msa1335860:intron 25.0%
!!! TGAAAATGAGAATTTTGATG+GGG - tig0000715:57991-58010 Msa1335860:intron 25.0%
! CTTAAAGCTATTCCTTATAA+TGG + tig0000715:58414-58433 None:intergenic 25.0%
!! CATTATAAGGAATAGCTTTA+AGG - tig0000715:58412-58431 Msa1335860:intron 25.0%
! AAAGAAACAATTACTATTGC+AGG + tig0000715:58546-58565 None:intergenic 25.0%
! TGAAAAGAAAAATGATCCTT+TGG - tig0000715:58584-58603 Msa1335860:intron 25.0%
! CTTAATTAATCAATAAGTGC+AGG - tig0000715:58880-58899 Msa1335860:intron 25.0%
! AGTCAAATTTATATAGGCTA+AGG - tig0000715:59075-59094 Msa1335860:intron 25.0%
!! TTTCTAAAGACCATTAATGA+GGG - tig0000715:59566-59585 Msa1335860:CDS 25.0%
!! ACGTCTATTTTACATGATAA+GGG + tig0000715:59771-59790 None:intergenic 25.0%
! AAAGTGAAAAAGAAAACTCT+AGG - tig0000715:59915-59934 Msa1335860:intron 25.0%
!!! CTTTACATTTTGCTTTAGAT+TGG - tig0000715:59951-59970 Msa1335860:intron 25.0%
!! ATAGAACAAAAAAGTACACT+TGG + tig0000715:60023-60042 None:intergenic 25.0%
!! CTGTAGTTTTTCTATAAACA+TGG + tig0000715:60057-60076 None:intergenic 25.0%
! AAATAAATTCCAAGCCAAAA+AGG + tig0000715:60330-60349 None:intergenic 25.0%
!! TAAGCAATCATTCTACATTT+TGG - tig0000715:60450-60469 Msa1335860:intron 25.0%
! TCATCAATTTAATGACAATG+TGG - tig0000715:60489-60508 Msa1335860:intron 25.0%
! TACCTAATAGAAGGAAAATA+TGG - tig0000715:60546-60565 Msa1335860:intron 25.0%
!! AACCATATTTTCCTTCTATT+AGG + tig0000715:60551-60570 None:intergenic 25.0%
! AATAGAAGGAAAATATGGTT+TGG - tig0000715:60551-60570 Msa1335860:intron 25.0%
! AAAACAAAACCAACTAGAAA+AGG + tig0000715:60679-60698 None:intergenic 25.0%
!!! TTGTTTTTACCTTTTTTGAG+GGG - tig0000715:60692-60711 Msa1335860:intron 25.0%
! TTTTTCTTTTCCAGTTTGGA+TGG - tig0000715:55712-55731 Msa1335860:three_prime_UTR 30.0%
! TTTTCTTTTCCAGTTTGGAT+GGG - tig0000715:55713-55732 Msa1335860:three_prime_UTR 30.0%
CAATAATGTGCATATCACAA+TGG - tig0000715:55873-55892 Msa1335860:three_prime_UTR 30.0%
ATTGAATTAAGTTTGTGAGC+AGG - tig0000715:56263-56282 Msa1335860:intron 30.0%
GCAGAATGATAATTGCAAAT+TGG - tig0000715:56316-56335 Msa1335860:intron 30.0%
TAGATTTAGAGAGATTGTAG+AGG - tig0000715:56382-56401 Msa1335860:intron 30.0%
GATTTAGAGAGAGATTATAG+AGG - tig0000715:56438-56457 Msa1335860:intron 30.0%
AATACAAGACATGCAAAAAG+TGG - tig0000715:56539-56558 Msa1335860:intron 30.0%
ATACAAGACATGCAAAAAGT+GGG - tig0000715:56540-56559 Msa1335860:intron 30.0%
!! AACTGGAATAAGTTTTGATC+AGG - tig0000715:56653-56672 Msa1335860:intron 30.0%
! AAATTGGCTTCATAACAAGA+AGG + tig0000715:57163-57182 None:intergenic 30.0%
! CAATAATGTAATTTGTCAGG+AGG - tig0000715:57202-57221 Msa1335860:intron 30.0%
!! TTTTAACTCTGCAAGTTCTT+TGG - tig0000715:57244-57263 Msa1335860:intron 30.0%
AAAATATTGTGTTCGGTTGT+GGG + tig0000715:57680-57699 None:intergenic 30.0%
TAAAATATTGTGTTCGGTTG+TGG + tig0000715:57681-57700 None:intergenic 30.0%
ACCTTCTCTATATCTAGATA+CGG - tig0000715:57751-57770 Msa1335860:intron 30.0%
TGAAATTGAGAAGGATTAGA+AGG + tig0000715:57854-57873 None:intergenic 30.0%
! AGCCAAATTTGAAATTGAGA+AGG + tig0000715:57863-57882 None:intergenic 30.0%
! AAATTTGGCTGCAAGATTTT+CGG - tig0000715:57873-57892 Msa1335860:intron 30.0%
TACAGGTATGTGCATATATA+AGG + tig0000715:57902-57921 None:intergenic 30.0%
! GGTGAAAATGAGAATTTTGA+TGG - tig0000715:57989-58008 Msa1335860:intron 30.0%
TGACTGAATTCATGATCATT+GGG + tig0000715:58134-58153 None:intergenic 30.0%
!!! GGACTCAGCTTAATATTTTT+TGG - tig0000715:58156-58175 Msa1335860:intron 30.0%
TTATGTGTGTTCTATGTAAC+AGG - tig0000715:58382-58401 Msa1335860:intron 30.0%
CTAACATGCAATAATGCAAA+AGG + tig0000715:58521-58540 None:intergenic 30.0%
! AGACAATTAGTGTTAAGTTG+AGG - tig0000715:58707-58726 Msa1335860:CDS 30.0%
CTCAAAGCTCTATAAACTTT+AGG + tig0000715:58794-58813 None:intergenic 30.0%
TATATACTCGACACATGTTA+AGG + tig0000715:58926-58945 None:intergenic 30.0%
AAATGATGACTTAATTCGCT+AGG + tig0000715:58984-59003 None:intergenic 30.0%
CAGCAGAGTCAAATTTATAT+AGG - tig0000715:59069-59088 Msa1335860:intron 30.0%
! TGTTTGCCTTTATTTATTGG+TGG - tig0000715:59325-59344 Msa1335860:intron 30.0%
GAGAAACCACCAATAAATAA+AGG + tig0000715:59334-59353 None:intergenic 30.0%
!! TTGGTGGTTTCTCTTTTTAT+AGG - tig0000715:59341-59360 Msa1335860:intron 30.0%
! CTCATTAATGGTCTTTAGAA+AGG + tig0000715:59567-59586 None:intergenic 30.0%
! CTTTCTAAAGACCATTAATG+AGG - tig0000715:59565-59584 Msa1335860:CDS 30.0%
! ATCAATCCTGGGAATAATTT+TGG + tig0000715:59630-59649 None:intergenic 30.0%
ATTTCATGTGTGATATTCCA+GGG + tig0000715:59656-59675 None:intergenic 30.0%
AATTTCATGTGTGATATTCC+AGG + tig0000715:59657-59676 None:intergenic 30.0%
!!! GATTGATGATTTGTTTTCCT+GGG - tig0000715:59708-59727 Msa1335860:CDS 30.0%
! CACGTCTATTTTACATGATA+AGG + tig0000715:59772-59791 None:intergenic 30.0%
CTTATCATGTAAAATAGACG+TGG - tig0000715:59770-59789 Msa1335860:CDS 30.0%
!!! ATTTTTTATTGTTGTTCCCC+TGG - tig0000715:59859-59878 Msa1335860:intron 30.0%
TTTCCTTTATGAACTTACGT+AGG + tig0000715:59887-59906 None:intergenic 30.0%
AAAACATACTGAACTACATG+TGG - tig0000715:59996-60015 Msa1335860:intron 30.0%
CATTTGACAACTTTCAATCT+TGG + tig0000715:60129-60148 None:intergenic 30.0%
CAAGATTGAAAGTTGTCAAA+TGG - tig0000715:60127-60146 Msa1335860:intron 30.0%
! ATACATGCCCACATTATTTT+AGG + tig0000715:60208-60227 None:intergenic 30.0%
ATCTGTAATTCTCAAGAGTT+TGG + tig0000715:60389-60408 None:intergenic 30.0%
TCAATTTAATGACAATGTGG+TGG - tig0000715:60492-60511 Msa1335860:intron 30.0%
! AAATATGGTTTGGACATTAC+AGG - tig0000715:60561-60580 Msa1335860:intron 30.0%
! GACATTACAGGCAAATATTT+TGG - tig0000715:60573-60592 Msa1335860:intron 30.0%
ACATTCTCAATTTCAAAGAG+TGG + tig0000715:60639-60658 None:intergenic 30.0%
TGGTACAAATGATAAACCAA+TGG + tig0000715:60726-60745 None:intergenic 30.0%
!!! TCTTGCTGGTTTTATACTAA+TGG + tig0000715:60746-60765 None:intergenic 30.0%
TTACAGTTTATCAATCTTGC+TGG + tig0000715:60760-60779 None:intergenic 30.0%
GCAAGATTGATAAACTGTAA+AGG - tig0000715:60760-60779 Msa1335860:intron 30.0%
ACTCTTGTAATTTACTGTTG+AGG - tig0000715:60787-60806 Msa1335860:intron 30.0%
TGTGCATATCACAATGGTTA+TGG - tig0000715:55879-55898 Msa1335860:three_prime_UTR 35.0%
TCACAATGGTTATGGAAGTA+AGG - tig0000715:55887-55906 Msa1335860:three_prime_UTR 35.0%
CACAATGGTTATGGAAGTAA+GGG - tig0000715:55888-55907 Msa1335860:three_prime_UTR 35.0%
TGAGGAATCATGATGATTGA+TGG - tig0000715:56056-56075 Msa1335860:three_prime_UTR 35.0%
! ATGATGATTGATGGTCTACT+TGG - tig0000715:56065-56084 Msa1335860:exon 35.0%
ATGTTGAGCTGCGTAATAAA+AGG - tig0000715:56100-56119 Msa1335860:CDS 35.0%
! ACAACAGGGCATTTCAAATT+TGG + tig0000715:56158-56177 None:intergenic 35.0%
CAGGAGTTCAACATTTGTTT+GGG - tig0000715:56282-56301 Msa1335860:intron 35.0%
AGAGAGATTATAGAGGATCT+GGG - tig0000715:56445-56464 Msa1335860:intron 35.0%
TGCATCACTATATGCATCAT+CGG + tig0000715:56497-56516 None:intergenic 35.0%
TACAAGACATGCAAAAAGTG+GGG - tig0000715:56541-56560 Msa1335860:intron 35.0%
GTTGTTTGTTCTCTGTATGT+TGG - tig0000715:56568-56587 Msa1335860:intron 35.0%
TTTGTTCTCTGTATGTTGGT+GGG - tig0000715:56572-56591 Msa1335860:intron 35.0%
!!! GGCTATGGTTTTTTAGAGTT+TGG - tig0000715:56597-56616 Msa1335860:intron 35.0%
TTGTACTGCCCATTTATAAC+TGG - tig0000715:56636-56655 Msa1335860:intron 35.0%
TGTCTCAAGATTTGGACTTA+TGG - tig0000715:56872-56891 Msa1335860:intron 35.0%
AACTCATACTTGCTTACTTG+AGG + tig0000715:57000-57019 None:intergenic 35.0%
TATGAGTTCTTCACTGTGTT+TGG - tig0000715:57012-57031 Msa1335860:intron 35.0%
GCAATGGTTATTCACTATGT+TGG - tig0000715:57071-57090 Msa1335860:CDS 35.0%
ATCCGTGAAACTATTGAAGA+TGG - tig0000715:57302-57321 Msa1335860:intron 35.0%
CACCATCTTCAATAGTTTCA+CGG + tig0000715:57307-57326 None:intergenic 35.0%
TTTGAGAGAAAAATGAGTGG+AGG + tig0000715:57406-57425 None:intergenic 35.0%
GAGTTTGAGAGAAAAATGAG+TGG + tig0000715:57409-57428 None:intergenic 35.0%
! CAGTGACACCTTTAAGTTAA+TGG + tig0000715:57520-57539 None:intergenic 35.0%
GTATCTAGATATAGAGAAGG+TGG + tig0000715:57752-57771 None:intergenic 35.0%
TCCGTATCTAGATATAGAGA+AGG + tig0000715:57755-57774 None:intergenic 35.0%
ATCATAGTAACCAGCTGAAA+GGG + tig0000715:58024-58043 None:intergenic 35.0%
GTGACTGAATTCATGATCAT+TGG + tig0000715:58135-58154 None:intergenic 35.0%
ATGATCATGAATTCAGTCAC+AGG - tig0000715:58135-58154 Msa1335860:intron 35.0%
AGACACATAAAGAACAAGAG+TGG + tig0000715:58231-58250 None:intergenic 35.0%
! TTAGAAGTTTGGGATCTACA+AGG - tig0000715:58355-58374 Msa1335860:intron 35.0%
AACAGGTGAGAACCATTATA+AGG - tig0000715:58399-58418 Msa1335860:intron 35.0%
! CCAATTTTATAAGCAGCTGA+AGG + tig0000715:58479-58498 None:intergenic 35.0%
CCTTCAGCTGCTTATAAAAT+TGG - tig0000715:58476-58495 Msa1335860:CDS 35.0%
TCTTTGTCTTTGACATTTGC+AGG - tig0000715:58561-58580 Msa1335860:intron 35.0%
!! AAGTTTATAGAGCTTTGAGC+AGG - tig0000715:58795-58814 Msa1335860:intron 35.0%
! GAGTTCTAGTTACTCCATAA+AGG - tig0000715:58953-58972 Msa1335860:CDS 35.0%
TTCGCTAGGATATTCCTTTA+TGG + tig0000715:58970-58989 None:intergenic 35.0%
ATAAAGGCAAACATTATGCC+CGG + tig0000715:59318-59337 None:intergenic 35.0%
AAATCCACATGGTAAAACCA+AGG + tig0000715:59394-59413 None:intergenic 35.0%
CCATTCTCAATAAATCCACA+TGG + tig0000715:59405-59424 None:intergenic 35.0%
CCATGTGGATTTATTGAGAA+TGG - tig0000715:59402-59421 Msa1335860:intron 35.0%
!! TTTATTGAGAATGGACTGAC+AGG - tig0000715:59411-59430 Msa1335860:intron 35.0%
!! TTATTGAGAATGGACTGACA+GGG - tig0000715:59412-59431 Msa1335860:intron 35.0%
TTAACCATCTCCCTCATTAA+TGG + tig0000715:59579-59598 None:intergenic 35.0%
CATCAAACAAACGTTTCCTT+AGG + tig0000715:59604-59623 None:intergenic 35.0%
ATGTCACCAAAATTATTCCC+AGG - tig0000715:59621-59640 Msa1335860:CDS 35.0%
!!! CGATTGATGATTTGTTTTCC+TGG - tig0000715:59707-59726 Msa1335860:CDS 35.0%
! TTCTTTAAGAAACTATGCCC+AGG + tig0000715:59728-59747 None:intergenic 35.0%
!! GCATGTTGGTTTATAAACGT+GGG - tig0000715:59796-59815 Msa1335860:CDS 35.0%
GTACCTACGTAAGTTCATAA+AGG - tig0000715:59881-59900 Msa1335860:intron 35.0%
!! CATTTTGCTTTAGATTGGGT+TGG - tig0000715:59956-59975 Msa1335860:intron 35.0%
TTACGTATTACACTGTTGGT+AGG - tig0000715:60090-60109 Msa1335860:intron 35.0%
ATGGTCAAAGTTAACTAACC+TGG - tig0000715:60146-60165 Msa1335860:intron 35.0%
! TTAACTAACCTGGTCTTTCT+GGG - tig0000715:60156-60175 Msa1335860:intron 35.0%
! AAATTTTACCCAGAAAGACC+AGG + tig0000715:60167-60186 None:intergenic 35.0%
! GGTCTTTCTGGGTAAAATTT+TGG - tig0000715:60167-60186 Msa1335860:intron 35.0%
CATTATCTGTTGTAGAACTC+AGG + tig0000715:60234-60253 None:intergenic 35.0%
!!! TAGAATCATCCTTTTTGGCT+TGG - tig0000715:60318-60337 Msa1335860:intron 35.0%
!! TTGGCTTGGAATTTATTTGC+AGG - tig0000715:60332-60351 Msa1335860:intron 35.0%
! TGGCTTGGAATTTATTTGCA+GGG - tig0000715:60333-60352 Msa1335860:intron 35.0%
! TACAGATTTGTTCCACCAAT+CGG - tig0000715:60402-60421 Msa1335860:intron 35.0%
GTTCAGTGTTACCTAATAGA+AGG - tig0000715:60537-60556 Msa1335860:intron 35.0%
ACAAATGATAAACCAATGGC+TGG + tig0000715:60722-60741 None:intergenic 35.0%
GGCGATATCAAAATAAGGGA+TGG - tig0000715:55832-55851 Msa1335860:three_prime_UTR 40.0%
AGGGATGGAGAAAAAGACTA+AGG - tig0000715:55847-55866 Msa1335860:three_prime_UTR 40.0%
! TATGAGAAGGTATGAGTGAG+AGG - tig0000715:56197-56216 Msa1335860:intron 40.0%
GCAGGAGTTCAACATTTGTT+TGG - tig0000715:56281-56300 Msa1335860:intron 40.0%
GATCGCCTACAATTGCTTTA+TGG - tig0000715:56338-56357 Msa1335860:intron 40.0%
CTGCACCATAAAGCAATTGT+AGG + tig0000715:56346-56365 None:intergenic 40.0%
TTTATGGTGCAGTCTCTGTA+GGG - tig0000715:56354-56373 Msa1335860:intron 40.0%
GAGAGAGATTATAGAGGATC+TGG - tig0000715:56444-56463 Msa1335860:intron 40.0%
TCTGGGTCAGTTGAAAATTG+TGG - tig0000715:56462-56481 Msa1335860:intron 40.0%
GCATCACTATATGCATCATC+GGG + tig0000715:56496-56515 None:intergenic 40.0%
GTTTGTTCTCTGTATGTTGG+TGG - tig0000715:56571-56590 Msa1335860:intron 40.0%
AGGCAATGTGTTGTATCGTT+GGG - tig0000715:56774-56793 Msa1335860:intron 40.0%
! GTAGGTTTGAAGCCAACATA+TGG - tig0000715:56846-56865 Msa1335860:intron 40.0%
TATGGACGTGTCTCAAGATT+TGG - tig0000715:56864-56883 Msa1335860:intron 40.0%
ATACTTCTCCATGCAATTGC+TGG - tig0000715:56954-56973 Msa1335860:intron 40.0%
TATCATGACCAGCAATTGCA+TGG + tig0000715:56965-56984 None:intergenic 40.0%
TCATACTTGCTTACTTGAGG+TGG + tig0000715:56997-57016 None:intergenic 40.0%
TTGGAAAGTAAGCCCTTGAA+AGG - tig0000715:57263-57282 Msa1335860:intron 40.0%
CCAATTCTCAGACCTTTCAA+GGG + tig0000715:57278-57297 None:intergenic 40.0%
ACCAATTCTCAGACCTTTCA+AGG + tig0000715:57279-57298 None:intergenic 40.0%
!! ATTGAAGATGGTGTTGATGC+TGG - tig0000715:57314-57333 Msa1335860:intron 40.0%
!! TGATGCTGCTTCACATTTTG+AGG - tig0000715:57355-57374 Msa1335860:intron 40.0%
!!! GCTTCACATTTTGAGGCATT+AGG - tig0000715:57362-57381 Msa1335860:intron 40.0%
AAGATGATTCAGACAAAGCG+AGG + tig0000715:57578-57597 None:intergenic 40.0%
TGTCTCGCTATGATGGTATT+AGG - tig0000715:57604-57623 Msa1335860:intron 40.0%
CTATGATGGTATTAGGTCAG+TGG - tig0000715:57611-57630 Msa1335860:intron 40.0%
CTAGCTCATCAGCATAAACT+TGG + tig0000715:57780-57799 None:intergenic 40.0%
CATCATAGTAACCAGCTGAA+AGG + tig0000715:58025-58044 None:intergenic 40.0%
ATATTACAAACGAGCACAGC+AGG - tig0000715:58046-58065 Msa1335860:CDS 40.0%
GAACGTCGATAAGACAACAT+AGG + tig0000715:58320-58339 None:intergenic 40.0%
!! GAATAGCTTTAAGGAAGCAC+TGG - tig0000715:58421-58440 Msa1335860:intron 40.0%
!! AGATGAAGCTCTAAACCACT+GGG + tig0000715:59241-59260 None:intergenic 40.0%
!! AAGATGAAGCTCTAAACCAC+TGG + tig0000715:59242-59261 None:intergenic 40.0%
TAGGTAAATGTCAACCTAGC+TGG - tig0000715:59360-59379 Msa1335860:intron 40.0%
GATTGGTGCAGCATTTAATG+AGG - tig0000715:59455-59474 Msa1335860:intron 40.0%
AAGACCATTAATGAGGGAGA+TGG - tig0000715:59572-59591 Msa1335860:CDS 40.0%
AGGGAGATGGTTAAAACCTA+AGG - tig0000715:59585-59604 Msa1335860:CDS 40.0%
!! CGCATGTTGGTTTATAAACG+TGG - tig0000715:59795-59814 Msa1335860:CDS 40.0%
GAACTTGCAGTTACTTAGGA+GGG - tig0000715:59818-59837 Msa1335860:intron 40.0%
ATGAACTTACGTAGGTACCA+GGG + tig0000715:59879-59898 None:intergenic 40.0%
TATGAACTTACGTAGGTACC+AGG + tig0000715:59880-59899 None:intergenic 40.0%
GAGCTTACGTATTACACTGT+TGG - tig0000715:60086-60105 Msa1335860:intron 40.0%
! GTTAACTAACCTGGTCTTTC+TGG - tig0000715:60155-60174 Msa1335860:intron 40.0%
! GAGCTGATAGCGTTGAATAA+CGG - tig0000715:60424-60443 Msa1335860:intron 40.0%
! AGCTGATAGCGTTGAATAAC+GGG - tig0000715:60425-60444 Msa1335860:intron 40.0%
GAGTGAGAGGTGACAATATG+TGG - tig0000715:56210-56229 Msa1335860:intron 45.0%
CTTTATGGTGCAGTCTCTGT+AGG - tig0000715:56353-56372 Msa1335860:intron 45.0%
AGAGAGATTGTAGAGGATCC+AGG - tig0000715:56389-56408 Msa1335860:intron 45.0%
! TTCTCTGTATGTTGGTGGGT+TGG - tig0000715:56576-56595 Msa1335860:intron 45.0%
CAACGATACAACACATTGCC+TGG + tig0000715:56775-56794 None:intergenic 45.0%
CAGGCAATGTGTTGTATCGT+TGG - tig0000715:56773-56792 Msa1335860:intron 45.0%
GTATCGTTGGGAAGTGATAC+TGG - tig0000715:56786-56805 Msa1335860:intron 45.0%
ACAACACCGCAAAAAGATGC+CGG + tig0000715:56828-56847 None:intergenic 45.0%
!!! GCATCTTTTTGCGGTGTTGT+AGG - tig0000715:56828-56847 Msa1335860:intron 45.0%
CTTGAGACACGTCCATATGT+TGG + tig0000715:56861-56880 None:intergenic 45.0%
! CATTGGCTGCTTTGGTTCAT+CGG - tig0000715:56917-56936 Msa1335860:intron 45.0%
CCCTTGAAAGGTCTGAGAAT+TGG - tig0000715:57275-57294 Msa1335860:intron 45.0%
ATTAGGATGCTCTGTGAACG+AGG - tig0000715:57379-57398 Msa1335860:intron 45.0%
AAAGCGAGGACATAGTATGC+TGG + tig0000715:57564-57583 None:intergenic 45.0%
TCCAACTTGTCTCGCTATGA+TGG - tig0000715:57597-57616 Msa1335860:intron 45.0%
ACCATCATAGCGAGACAAGT+TGG + tig0000715:57601-57620 None:intergenic 45.0%
GATGAGCTAGACTCTCTCTA+TGG - tig0000715:57790-57809 Msa1335860:intron 45.0%
TACCTCAGAACCTAACCCTT+TGG + tig0000715:57827-57846 None:intergenic 45.0%
TTGGGCTAAGAAGACTTGAG+AGG + tig0000715:58116-58135 None:intergenic 45.0%
GAGTGGATGTATATCGTGTC+TGG + tig0000715:58214-58233 None:intergenic 45.0%
GATCCTTTGGCTATGTATGC+TGG - tig0000715:58597-58616 Msa1335860:intron 45.0%
TCACCAGCATACATAGCCAA+AGG + tig0000715:58603-58622 None:intergenic 45.0%
GGCATAAACCAGCAGTTATG+TGG + tig0000715:58821-58840 None:intergenic 45.0%
ATAACTAGTTGTGCACCCAG+TGG - tig0000715:59223-59242 Msa1335860:CDS 45.0%
CTCAGTTTACATGAGCATGC+CGG - tig0000715:59296-59315 Msa1335860:intron 45.0%
TCAGTTTACATGAGCATGCC+GGG - tig0000715:59297-59316 Msa1335860:intron 45.0%
ATGCTGCACCAATCATTTGC+AGG + tig0000715:59449-59468 None:intergenic 45.0%
CACTGAACTTCATGTTGACG+AGG - tig0000715:59500-59519 Msa1335860:intron 45.0%
TTCCAGGGACAATCAATCCT+GGG + tig0000715:59641-59660 None:intergenic 45.0%
ATTCCAGGGACAATCAATCC+TGG + tig0000715:59642-59661 None:intergenic 45.0%
GTGGGAACTTGCAGTTACTT+AGG - tig0000715:59814-59833 Msa1335860:intron 45.0%
GGAACTTGCAGTTACTTAGG+AGG - tig0000715:59817-59836 Msa1335860:intron 45.0%
TGAACTTACGTAGGTACCAG+GGG + tig0000715:59878-59897 None:intergenic 45.0%
TAATGACAATGTGGTGGCCA+AGG - tig0000715:60498-60517 Msa1335860:intron 45.0%
TGGTCACACATGACTGAATC+TGG - tig0000715:60593-60612 Msa1335860:intron 45.0%
!! AGTCAGCAGCCTTTTCTAGT+TGG - tig0000715:60667-60686 Msa1335860:intron 45.0%
GCATGAATGCCCATCCAAAC+TGG + tig0000715:55725-55744 None:intergenic 50.0%
TATGGGAGAGTCCACTAGTG+TGG - tig0000715:56021-56040 Msa1335860:three_prime_UTR 50.0%
ATGGGAGAGTCCACTAGTGT+GGG - tig0000715:56022-56041 Msa1335860:three_prime_UTR 50.0%
CAACACTAACCCCACACTAG+TGG + tig0000715:56035-56054 None:intergenic 50.0%
! CACTAGTGTGGGGTTAGTGT+TGG - tig0000715:56033-56052 Msa1335860:three_prime_UTR 50.0%
GAGATTGTAGAGGATCCAGG+CGG - tig0000715:56392-56411 Msa1335860:intron 50.0%
!! GTATGTTGGTGGGTTGGCTA+TGG - tig0000715:56582-56601 Msa1335860:intron 50.0%
TCGTTGGGAAGTGATACTGG+TGG - tig0000715:56789-56808 Msa1335860:intron 50.0%
! GTGATACTGGTGGAAGTGTG+AGG - tig0000715:56799-56818 Msa1335860:intron 50.0%
GCGTCATCACTTGATGCCAT+TGG - tig0000715:56900-56919 Msa1335860:intron 50.0%
! CTTGATGCCATTGGCTGCTT+TGG - tig0000715:56909-56928 Msa1335860:intron 50.0%
CGATGAACCAAAGCAGCCAA+TGG + tig0000715:56919-56938 None:intergenic 50.0%
! TCACTGCCATCCTTTTCGCT+TGG - tig0000715:57534-57553 Msa1335860:intron 50.0%
! CACTGCCATCCTTTTCGCTT+GGG - tig0000715:57535-57554 Msa1335860:intron 50.0%
TGTTCGGTTGTGGGTGTACT+TGG + tig0000715:57671-57690 None:intergenic 50.0%
TATGGAGATTCCCGAGCCAA+AGG - tig0000715:57808-57827 Msa1335860:intron 50.0%
ATGGAGATTCCCGAGCCAAA+GGG - tig0000715:57809-57828 Msa1335860:intron 50.0%
! AGAACCTAACCCTTTGGCTC+GGG + tig0000715:57821-57840 None:intergenic 50.0%
CAGAACCTAACCCTTTGGCT+CGG + tig0000715:57822-57841 None:intergenic 50.0%
AGCCAAAGGGTTAGGTTCTG+AGG - tig0000715:57822-57841 Msa1335860:intron 50.0%
TGCTGTGTAGTTGAGACGCA+TGG + tig0000715:59054-59073 None:intergenic 50.0%
CCACATGGTAAAACCAAGGC+AGG + tig0000715:59390-59409 None:intergenic 50.0%
!!! CCTGCCTTGGTTTTACCATG+TGG - tig0000715:59387-59406 Msa1335860:intron 50.0%
CCAATCATTTGCAGGCCAAC+AGG + tig0000715:59441-59460 None:intergenic 50.0%
! CCTGTTGGCCTGCAAATGAT+TGG - tig0000715:59438-59457 Msa1335860:intron 50.0%
TTCCCAGGATTGATTGTCCC+TGG - tig0000715:59636-59655 Msa1335860:CDS 50.0%
AATAGACGTGGCACGCATGT+TGG - tig0000715:59782-59801 Msa1335860:CDS 50.0%
TCAACGCTATCAGCTCCGAT+TGG + tig0000715:60420-60439 None:intergenic 50.0%
TGGCCAAGGCAGGTATGTTT+AGG - tig0000715:60512-60531 Msa1335860:intron 50.0%
GGCCAAGGCAGGTATGTTTA+GGG - tig0000715:60513-60532 Msa1335860:intron 50.0%
CACCCTAAACATACCTGCCT+TGG + tig0000715:60518-60537 None:intergenic 50.0%
GCTGGTGATCCCCTCAAAAA+AGG + tig0000715:60704-60723 None:intergenic 50.0%
TGGGAGAGTCCACTAGTGTG+GGG - tig0000715:56023-56042 Msa1335860:three_prime_UTR 55.0%
!! GTGTGGGGTTAGTGTTGGTG+AGG - tig0000715:56038-56057 Msa1335860:three_prime_UTR 55.0%
AATAGGTGACTGCCAACCCG+TGG - tig0000715:56694-56713 Msa1335860:intron 55.0%
ATAGGTGACTGCCAACCCGT+GGG - tig0000715:56695-56714 Msa1335860:intron 55.0%
CAACCCGTGGGATGTTTCCA+GGG - tig0000715:56707-56726 Msa1335860:intron 55.0%
AGGAGGATCATCCGGAGGAT+CGG - tig0000715:56734-56753 Msa1335860:intron 55.0%
! AGGCAGCCGGCATCTTTTTG+CGG - tig0000715:56819-56838 Msa1335860:intron 55.0%
GTTCATCGGTCGCTGATGCT+GGG - tig0000715:56931-56950 Msa1335860:intron 55.0%
GGCAACCCAAGCGAAAAGGA+TGG + tig0000715:57543-57562 None:intergenic 55.0%
TGCTGGCAACCCAAGCGAAA+AGG + tig0000715:57547-57566 None:intergenic 55.0%
! AGAGAGCGAGAGGGGTACAT+GGG + tig0000715:57644-57663 None:intergenic 55.0%
! AAGAGAGCGAGAGGGGTACA+TGG + tig0000715:57645-57664 None:intergenic 55.0%
TTGGACGAAGAGAGCGAGAG+GGG + tig0000715:57652-57671 None:intergenic 55.0%
CTTGGACGAAGAGAGCGAGA+GGG + tig0000715:57653-57672 None:intergenic 55.0%
ACTTGGACGAAGAGAGCGAG+AGG + tig0000715:57654-57673 None:intergenic 55.0%
GATTCCCGAGCCAAAGGGTT+AGG - tig0000715:57814-57833 Msa1335860:intron 55.0%
GGGACATATGCCCTTTCAGC+TGG - tig0000715:58011-58030 Msa1335860:intron 55.0%
AAGCAGCTGAAGGAGCTGCA+GGG + tig0000715:58469-58488 None:intergenic 55.0%
TAAGCAGCTGAAGGAGCTGC+AGG + tig0000715:58470-58489 None:intergenic 55.0%
TGAGCAGGCCACATAACTGC+TGG - tig0000715:58810-58829 Msa1335860:intron 55.0%
! CAGGGAGAGCTTCTGAGAGT+GGG - tig0000715:60351-60370 Msa1335860:intron 55.0%
ACGCTATCAGCTCCGATTGG+TGG + tig0000715:60417-60436 None:intergenic 55.0%
TTGAGGGGATCACCAGCCAT+TGG - tig0000715:60707-60726 Msa1335860:intron 55.0%
CAGGCGGTGCAGTCTCTGTA+GGG - tig0000715:56408-56427 Msa1335860:intron 60.0%
CCTGGAAACATCCCACGGGT+TGG + tig0000715:56709-56728 None:intergenic 60.0%
CCAACCCGTGGGATGTTTCC+AGG - tig0000715:56706-56725 Msa1335860:intron 60.0%
GCACCCTGGAAACATCCCAC+GGG + tig0000715:56713-56732 None:intergenic 60.0%
GGCACCCTGGAAACATCCCA+CGG + tig0000715:56714-56733 None:intergenic 60.0%
! TGGGATGTTTCCAGGGTGCC+AGG - tig0000715:56714-56733 Msa1335860:intron 60.0%
! GATGTTTCCAGGGTGCCAGG+AGG - tig0000715:56717-56736 Msa1335860:intron 60.0%
! AGGGTGCCAGGAGGATCATC+CGG - tig0000715:56726-56745 Msa1335860:intron 60.0%
GATCCTCCGGATGATCCTCC+TGG + tig0000715:56735-56754 None:intergenic 60.0%
AACTGCAGCTGCCGATCCTC+CGG + tig0000715:56748-56767 None:intergenic 60.0%
! TGGTGGAAGTGTGAGGCAGC+CGG - tig0000715:56806-56825 Msa1335860:intron 60.0%
GGTTCATCGGTCGCTGATGC+TGG - tig0000715:56930-56949 Msa1335860:intron 60.0%
! GAGAGCGAGAGGGGTACATG+GGG + tig0000715:57643-57662 None:intergenic 60.0%
AGCAGCTGAAGGAGCTGCAG+GGG + tig0000715:58468-58487 None:intergenic 60.0%
CCAAGGCAGGTAGTCCAGCT+AGG + tig0000715:59377-59396 None:intergenic 60.0%
CCTAGCTGGACTACCTGCCT+TGG - tig0000715:59374-59393 Msa1335860:intron 60.0%
GGACTGACAGGGCTTCCTGT+TGG - tig0000715:59423-59442 Msa1335860:intron 60.0%
! GCAGGGAGAGCTTCTGAGAG+TGG - tig0000715:60350-60369 Msa1335860:intron 60.0%
GACAATGTGGTGGCCAAGGC+AGG - tig0000715:60502-60521 Msa1335860:intron 60.0%
CCTACAGAGACTGCACCGCC+TGG + tig0000715:56410-56429 None:intergenic 65.0%
CCAGGCGGTGCAGTCTCTGT+AGG - tig0000715:56407-56426 Msa1335860:intron 65.0%
GGATGATCCTCCTGGCACCC+TGG + tig0000715:56727-56746 None:intergenic 65.0%
GTGCCAGGAGGATCATCCGG+AGG - tig0000715:56729-56748 Msa1335860:intron 65.0%
CGGCAGCTGCAGTTTCTGCC+AGG - tig0000715:56754-56773 Msa1335860:intron 65.0%
Chromosome Type Strat End Strand Name
tig0000715 gene 55703 60817 55703 ID=Msa1335860;Name=Msa1335860
tig0000715 mRNA 55703 60817 55703 ID=Msa1335860-mRNA-1;Parent=Msa1335860;Name=Msa1335860-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.8|0.72|0.90|1|0.90|11|374|361
tig0000715 exon 55703 56166 55703 ID=Msa1335860-mRNA-1:exon:431;Parent=Msa1335860-mRNA-1
tig0000715 exon 57044 57157 57044 ID=Msa1335860-mRNA-1:exon:430;Parent=Msa1335860-mRNA-1
tig0000715 exon 57888 57937 57888 ID=Msa1335860-mRNA-1:exon:429;Parent=Msa1335860-mRNA-1
tig0000715 exon 58023 58116 58023 ID=Msa1335860-mRNA-1:exon:428;Parent=Msa1335860-mRNA-1
tig0000715 exon 58453 58530 58453 ID=Msa1335860-mRNA-1:exon:427;Parent=Msa1335860-mRNA-1
tig0000715 exon 58677 58752 58677 ID=Msa1335860-mRNA-1:exon:426;Parent=Msa1335860-mRNA-1
tig0000715 exon 58895 58989 58895 ID=Msa1335860-mRNA-1:exon:425;Parent=Msa1335860-mRNA-1
tig0000715 exon 59120 59299 59120 ID=Msa1335860-mRNA-1:exon:424;Parent=Msa1335860-mRNA-1
tig0000715 exon 59510 59670 59510 ID=Msa1335860-mRNA-1:exon:423;Parent=Msa1335860-mRNA-1
tig0000715 exon 59680 59821 59680 ID=Msa1335860-mRNA-1:exon:422;Parent=Msa1335860-mRNA-1
tig0000715 exon 60812 60817 60812 ID=Msa1335860-mRNA-1:exon:421;Parent=Msa1335860-mRNA-1
tig0000715 CDS 60812 60817 60812 ID=Msa1335860-mRNA-1:cds;Parent=Msa1335860-mRNA-1
tig0000715 CDS 59680 59821 59680 ID=Msa1335860-mRNA-1:cds;Parent=Msa1335860-mRNA-1
tig0000715 CDS 59510 59670 59510 ID=Msa1335860-mRNA-1:cds;Parent=Msa1335860-mRNA-1
tig0000715 CDS 59120 59299 59120 ID=Msa1335860-mRNA-1:cds;Parent=Msa1335860-mRNA-1
tig0000715 CDS 58895 58989 58895 ID=Msa1335860-mRNA-1:cds;Parent=Msa1335860-mRNA-1
tig0000715 CDS 58677 58752 58677 ID=Msa1335860-mRNA-1:cds;Parent=Msa1335860-mRNA-1
tig0000715 CDS 58453 58530 58453 ID=Msa1335860-mRNA-1:cds;Parent=Msa1335860-mRNA-1
tig0000715 CDS 58023 58116 58023 ID=Msa1335860-mRNA-1:cds;Parent=Msa1335860-mRNA-1
tig0000715 CDS 57888 57937 57888 ID=Msa1335860-mRNA-1:cds;Parent=Msa1335860-mRNA-1
tig0000715 CDS 57044 57157 57044 ID=Msa1335860-mRNA-1:cds;Parent=Msa1335860-mRNA-1
tig0000715 CDS 56077 56166 56077 ID=Msa1335860-mRNA-1:cds;Parent=Msa1335860-mRNA-1
tig0000715 three_prime_UTR 55703 56076 55703 ID=Msa1335860-mRNA-1:three_prime_utr;Parent=Msa1335860-mRNA-1
Gene Sequence

>Msa1335860

ATCAATGTGACTGCCAACCCGTGGGATGTTTCCAGGGTGCCAGGAGGATCATCCGGAGGATCGGCAGCTGCAGTTTCTGCCAGGCAATGTGTTGTATCGTTGGGAAGTGATACTGGTGGAAGTGTGAGGCAGCCGGCATCTTTTTGCGGTTTGAAGCCAACATATGGACGTGTCTCAAGATTTGGACTTATGGCGTATGCGTCATCACTTGATGCCATTGGCTGCTTTGGTTCATCGGTCGCTGATGCTGGGATACTTCTCCATGCAATTGCTGGTCATGATAGATTTGATGCCACCTCAAGTAAGCAAGAGGTGCCCAACTTTCTATCTCATTTTAACTCTGCAAGTTCTTTGGAAAGTAAGCCCTTGAAAGGTCTGAGAATTGGTTTGATCCGTGAAACTATTGAAGATGGTGTTGATGCTGGAGTAGTTTCTACAATTCGTGATGCTGCTTCACATTTTGAGGCATTAGGATGCTCTGTGAACGAGGTGTCACTGCCATCCTTTTCGCTTGGGTTGCCAGCATACTATGTCCTCGCTTTGTCTGAATCATCTTCCAACTTGTCTCGCTATGATGGTATTAGATACGGAAACCAAGTTTATGCTGATGAGCTAGACTCTCTCTATGGAGATTCCCGAGCCAAAGGGTTAGGTTCTGAGGTGAAAATGAGAATTTTGATGGGGACATATGCCCTTTCAGCTGGTTACTATGATGCATATTACAAACGAGCACAGCAGGTGAGAACCATTATAAGGAATAGCTTTAAGGAAGCACTGGATCAATATGATATCTTGATTTCCCCTGCAGCTCCTTCAGCTGCTTATAAAATTGGTGAAAAGAAAAATGATCCTTTGGCTATGTATGCTGGTGACATCATGACTGTAAATGTCAACCTAGCTGGACTACCTGCCTTGGTTTTACCATGTGGATTTATTGAGAATGGACTGACAGGGCTTCCTGTTGGCCTGCAAATGATTGGTGCAGCATTTAATGAGGGAGAGCTTCTGAGAGTGGGACATATCTTTGACCAAACTCTTGAGAATTACAGATTTGTTCCACCAATCGGAGCTGATAGCGTTGAATAA

Protein sequence

>Msa1335860

INVTANPWDVSRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGLKPTYGRVSRFGLMAYASSLDAIGCFGSSVADAGILLHAIAGHDRFDATSSKQEVPNFLSHFNSASSLESKPLKGLRIGLIRETIEDGVDAGVVSTIRDAASHFEALGCSVNEVSLPSFSLGLPAYYVLALSESSSNLSRYDGIRYGNQVYADELDSLYGDSRAKGLGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTIIRNSFKEALDQYDILISPAAPSAAYKIGEKKNDPLAMYAGDIMTVNVNLAGLPALVLPCGFIENGLTGLPVGLQMIGAAFNEGELLRVGHIFDQTLENYRFVPPIGADSVE*