AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0454570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0454570 MtrunA17_Chr3g0101031 97.931 435 6 3 9 443 1 432 0.0 862
Msa0454570 MtrunA17_Chr5g0445221 72.184 435 101 8 11 443 1 417 0.0 607
Msa0454570 MtrunA17_Chr5g0441911 37.981 416 213 10 63 443 32 437 7.56e-82 259
Msa0454570 MtrunA17_Chr3g0094501 36.804 413 225 6 63 443 35 443 5.47e-78 249
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0454570 AT5G55530.2 56.293 437 155 9 11 443 1 405 1.62e-156 449
Msa0454570 AT5G55530.1 56.293 437 155 9 11 443 1 405 1.62e-156 449
Msa0454570 AT5G55530.3 56.293 437 155 9 11 443 1 405 1.62e-156 449
Msa0454570 AT1G50570.2 54.156 397 149 9 50 443 22 388 2.44e-127 374
Msa0454570 AT1G50570.1 54.156 397 149 9 50 443 22 388 2.44e-127 374
Msa0454570 AT5G12300.1 45.641 195 89 5 66 251 21 207 1.34e-52 181
Msa0454570 AT5G12300.1 44.872 78 28 2 381 443 297 374 5.11e-12 67.8

Find 134 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTGTGAAATTGAACTTTA+TGG 0.192348 3_3:+45974386 Msa0454570:three_prime_UTR
TGTATTTCTTCTGATGTTGT+AGG 0.215421 3_3:+45974254 Msa0454570:three_prime_UTR
CTTCTGATGTTGTAGGTTAC+AGG 0.233561 3_3:+45974261 Msa0454570:three_prime_UTR
CTTTCTCTAGTTTACCATTC+TGG 0.234179 3_3:-45973088 None:intergenic
TGGTCTTCGTTTACAATCTT+AGG 0.237274 3_3:-45973308 None:intergenic
TTAATGGTTTCGGAATATTT+TGG 0.254413 3_3:+45973332 Msa0454570:CDS
CCAAGTCATGAACAAGTTTC+AGG 0.260250 3_3:+45973596 Msa0454570:CDS
GATCTGTTTCATTCTCCTTC+AGG 0.283889 3_3:+45973131 Msa0454570:CDS
TGTAAACGAAGACCACTTAA+TGG 0.295768 3_3:+45973316 Msa0454570:CDS
ACAATCTTCGTCTCAATGTT+TGG 0.296293 3_3:+45972955 Msa0454570:CDS
ATTGACTTCAATGTCCTTAG+AGG 0.297181 3_3:-45972733 None:intergenic
GTCTCTACTAAGACCATTAA+TGG 0.304090 3_3:+45972906 Msa0454570:CDS
GTTCCTTCCACCTCCATTAA+TGG 0.307297 3_3:-45972919 None:intergenic
TGAGTCATTGGCCAGAGATT+TGG 0.310125 3_3:+45973265 Msa0454570:CDS
TTTGTTGAGCGTAGGGAATT+CGG 0.312645 3_3:+45974164 Msa0454570:three_prime_UTR
CAATTACTGTTGTATGATCA+TGG 0.343347 3_3:+45972611 Msa0454570:CDS
TGCTGAACCATCTGCGGCTC+TGG 0.358153 3_3:-45973725 None:intergenic
CCTGAAACTTGTTCATGACT+TGG 0.362546 3_3:-45973596 None:intergenic
CGGTGCTACACCTGATGTTA+TGG 0.365739 3_3:+45973181 Msa0454570:CDS
CGAAGACCACTTAATGGTTT+CGG 0.367450 3_3:+45973322 Msa0454570:CDS
TTGTTGAGCGTAGGGAATTC+GGG 0.373496 3_3:+45974165 Msa0454570:three_prime_UTR
TCCTTGGTTTAAGGGAATAC+AGG 0.374155 3_3:+45973941 Msa0454570:three_prime_UTR
CATGTGTTCTAGTGATAATA+TGG 0.374230 3_3:+45974427 Msa0454570:three_prime_UTR
TCGTTTACAATCTTAGGATC+TGG 0.377435 3_3:-45973302 None:intergenic
CAATCTTCGTCTCAATGTTT+GGG 0.390020 3_3:+45972956 Msa0454570:CDS
AAGCAACGGTCCTTCCTCTA+AGG 0.393297 3_3:+45972719 Msa0454570:CDS
GAAAGTGAACCAACTACTTC+AGG 0.397702 3_3:+45973827 Msa0454570:CDS
CCAAGCAGTGTGTCGACAAA+TGG 0.402778 3_3:+45973506 Msa0454570:CDS
CTTGAATTTCCTGAAGTAGT+TGG 0.407339 3_3:-45973836 None:intergenic
CCCTTTAGAACCTCAGTCTT+GGG 0.408315 3_3:+45972657 Msa0454570:CDS
TTCACGGTCACAACAGGCTT+AGG 0.409739 3_3:-45973695 None:intergenic
CTGAAACTTGTTCATGACTT+GGG 0.410201 3_3:-45973595 None:intergenic
TTAGTAGAGACGCTGTTCTC+TGG 0.413884 3_3:-45972894 None:intergenic
CATTGACATTTAGATCATAA+AGG 0.418256 3_3:-45974364 None:intergenic
CTCGGTCATTAGATGAAGAT+TGG 0.425115 3_3:+45974030 Msa0454570:three_prime_UTR
CAAGCAGTGTGTCGACAAAT+GGG 0.428739 3_3:+45973507 Msa0454570:CDS
TCTAAGGACATTGAAGTCAA+TGG 0.431544 3_3:+45972735 Msa0454570:CDS
TGTTCTCTGGATTACTTGTC+AGG 0.437065 3_3:-45972881 None:intergenic
GTGAGCTATGGATGCTTAGC+AGG 0.442573 3_3:+45973000 Msa0454570:CDS
CTCGGAAACATGTGAGTCAT+TGG 0.443554 3_3:+45973253 Msa0454570:CDS
TCAATATTCACGGTCACAAC+AGG 0.447375 3_3:-45973701 None:intergenic
CCCAAGACTGAGGTTCTAAA+GGG 0.451045 3_3:-45972657 None:intergenic
ATTCATGACTGCGTGACTAC+AGG 0.454594 3_3:-45974007 None:intergenic
CACACATGGGATCTGATCAT+TGG 0.456050 3_3:-45974127 None:intergenic
GCTCGATGTTTATATACATC+AGG 0.456152 3_3:+45972800 Msa0454570:CDS
GACTCAGTGCTCTGATAGCT+TGG 0.460570 3_3:+45973370 Msa0454570:CDS
TATCTTGAAGATCAGTTGCT+TGG 0.461888 3_3:+45973032 Msa0454570:CDS
CTAAGGACATTGAAGTCAAT+GGG 0.464490 3_3:+45972736 Msa0454570:CDS
ACCCTTTAGAACCTCAGTCT+TGG 0.466024 3_3:+45972656 Msa0454570:CDS
ACCCAAGACTGAGGTTCTAA+AGG 0.472225 3_3:-45972658 None:intergenic
AGATCAGAACAATTGTATCT+TGG 0.479517 3_3:-45974100 None:intergenic
ATCTGCTATGCCGGGGAAAG+TGG 0.483139 3_3:+45973208 Msa0454570:CDS
TATGGCAATATCTGCTATGC+CGG 0.490303 3_3:+45973199 Msa0454570:CDS
TGCGCAAGTGGAACCTCCTA+AGG 0.490411 3_3:+45973472 Msa0454570:CDS
ACATGTGCAGCCACTTTCCC+CGG 0.491807 3_3:-45973218 None:intergenic
TAGAACCTCAGTCTTGGGTG+AGG 0.492450 3_3:+45972662 Msa0454570:CDS
AGAAGCTGGTGTTCGTCTTG+TGG 0.493545 3_3:+45973421 Msa0454570:CDS
CGGCTCTGGCTCAATATTCA+CGG 0.497755 3_3:-45973711 None:intergenic
CTTGGTGGAGACTCAACCTT+AGG 0.499060 3_3:-45973488 None:intergenic
GCAGATATTGCCATAACATC+AGG 0.499230 3_3:-45973191 None:intergenic
ATGGCAATATCTGCTATGCC+GGG 0.503138 3_3:+45973200 Msa0454570:CDS
CCATTTGTCGACACACTGCT+TGG 0.508473 3_3:-45973506 None:intergenic
GAGCGTAGGGAATTCGGGTC+CGG 0.509470 3_3:+45974170 Msa0454570:three_prime_UTR
AGAGCCGCAGATGGTTCAGC+AGG 0.512099 3_3:+45973727 Msa0454570:CDS
AATATTCCGAAACCATTAAG+TGG 0.512567 3_3:-45973328 None:intergenic
AGCGAAAATGAAGCTTCCTA+TGG 0.519913 3_3:+45973799 Msa0454570:CDS
GGGTTAGCGTTCTTAGTTTG+CGG 0.519999 3_3:-45973875 None:intergenic
GGCTGCACATGTCACTCAGC+AGG 0.521368 3_3:+45973229 Msa0454570:CDS
CGTCTCTCAAATGTGAGCTA+TGG 0.528137 3_3:+45972988 Msa0454570:CDS
ACTAAGACCATTAATGGAGG+TGG 0.529485 3_3:+45972912 Msa0454570:CDS
TCACGGTCACAACAGGCTTA+GGG 0.529557 3_3:-45973694 None:intergenic
TTCTGATGTTGTAGGTTACA+GGG 0.533539 3_3:+45974262 Msa0454570:three_prime_UTR
TGAAACTTGTTCATGACTTG+GGG 0.539460 3_3:-45973594 None:intergenic
TTCATGACTGCGTGACTACA+GGG 0.539476 3_3:-45974006 None:intergenic
ATGTTTATATACATCAGGCT+AGG 0.540326 3_3:+45972805 Msa0454570:CDS
CTCTGCTTCCATAATAGACA+CGG 0.542849 3_3:-45973898 None:intergenic
GAAAATCATAGTTCAGAAGC+TGG 0.543573 3_3:+45973407 Msa0454570:CDS
GGTGGAGACTCAACCTTAGG+AGG 0.548492 3_3:-45973485 None:intergenic
TGGTTTAAGGGAATACAGGC+AGG 0.549356 3_3:+45973945 Msa0454570:three_prime_UTR
TTTGTCGACACACTGCTTGG+TGG 0.552483 3_3:-45973503 None:intergenic
AGCACACGGTCACACACACA+TGG 0.553151 3_3:-45974141 None:intergenic
GAAGGAGAAACCACACTGGA+TGG 0.553921 3_3:-45974231 None:intergenic
GGTTCACTTTCAATGTCCAT+AGG 0.554954 3_3:-45973815 None:intergenic
TCTGAGCTTTCATGAGCAGA+AGG 0.558176 3_3:-45973539 None:intergenic
CGAAGATTGTCGTTAAACAC+AGG 0.561622 3_3:-45972942 None:intergenic
CAGTGGTGAGTCTGCGCAAG+TGG 0.564989 3_3:+45973460 Msa0454570:CDS
TAGCATAAACATCTTGCTTG+TGG 0.568663 3_3:-45972851 None:intergenic
GCCTGTATTCCCTTAAACCA+AGG 0.572851 3_3:-45973942 None:intergenic
GAGCACTCCAACGCATTCCT+CGG 0.573851 3_3:-45972781 None:intergenic
ACTTCAATGTCCTTAGAGGA+AGG 0.576019 3_3:-45972729 None:intergenic
TGTAGCACCGGTGTAAGCAA+TGG 0.580116 3_3:-45973168 None:intergenic
CAATTGTCCATTGCTTACAC+CGG 0.580933 3_3:+45973161 Msa0454570:CDS
TAGTGTTCACCATGTGAACG+TGG 0.581015 3_3:-45974452 None:intergenic
TGTTTATATACATCAGGCTA+GGG 0.582616 3_3:+45972806 Msa0454570:CDS
ACATGTCACTCAGCAGGACT+CGG 0.583074 3_3:+45973235 Msa0454570:CDS
TCATAAAGGACAAAGAAAGA+AGG 0.585782 3_3:-45974350 None:intergenic
GGAAGGACCGTTGCTTTGTG+TGG 0.589066 3_3:-45972712 None:intergenic
AGAACCTCAGTCTTGGGTGA+GGG 0.590332 3_3:+45972663 Msa0454570:CDS
AACTATCATGTCAAATGCCG+AGG 0.594132 3_3:+45972764 Msa0454570:CDS
AGTGTTCACCATGTGAACGT+GGG 0.595886 3_3:-45974451 None:intergenic
TCAAATGCCGAGGAATGCGT+TGG 0.596916 3_3:+45972774 Msa0454570:CDS
AATATGGCCCCACGTTCACA+TGG 0.599084 3_3:+45974443 Msa0454570:three_prime_UTR
AGGGTGATACAACAGACTGT+GGG 0.599615 3_3:-45972638 None:intergenic
GGACATTGAAGTCAATGGGA+AGG 0.601234 3_3:+45972740 Msa0454570:CDS
CATAACATCAGGTGTAGCAC+CGG 0.601546 3_3:-45973180 None:intergenic
TCAGAAGTGCTAGTCCAGAA+TGG 0.601594 3_3:+45973074 Msa0454570:CDS
TCTGCTTCCATAATAGACAC+GGG 0.601885 3_3:-45973897 None:intergenic
TATTGAGCCAGAGCCGCAGA+TGG 0.613301 3_3:+45973718 Msa0454570:CDS
GGCTTAGGGAATAAATCACT+CGG 0.615358 3_3:-45973680 None:intergenic
ATATCCTGCTGAACCATCTG+CGG 0.615970 3_3:-45973731 None:intergenic
AACATCAGAAGAAATACAGA+AGG 0.623513 3_3:-45974249 None:intergenic
AGTCACGCAGTCATGAATCT+CGG 0.624964 3_3:+45974012 Msa0454570:three_prime_UTR
CTGCTTCCATAATAGACACG+GGG 0.629788 3_3:-45973896 None:intergenic
GACAATTGAACAAAGCCTGA+AGG 0.631050 3_3:-45973146 None:intergenic
ATCACTCGGAGCAACACTTG+AGG 0.633360 3_3:-45973666 None:intergenic
AAGGGTGATACAACAGACTG+TGG 0.634523 3_3:-45972639 None:intergenic
GTGTTCACCATGTGAACGTG+GGG 0.641393 3_3:-45974450 None:intergenic
AGACCATTAATGGAGGTGGA+AGG 0.648853 3_3:+45972916 Msa0454570:CDS
TGGACTAGCACTTCTGACAA+CGG 0.653528 3_3:-45973068 None:intergenic
TGGCAATATCTGCTATGCCG+GGG 0.667680 3_3:+45973201 Msa0454570:CDS
ACAAGTTTCAGGAACCAAAG+AGG 0.670665 3_3:+45973607 Msa0454570:CDS
CTACGCTCAACAAAAGCACA+CGG 0.671598 3_3:-45974155 None:intergenic
CTCACCCTCACCCAAGACTG+AGG 0.674424 3_3:-45972667 None:intergenic
TACAGAAGGAGAAACCACAC+TGG 0.675767 3_3:-45974235 None:intergenic
GATGTTACCACACAAAGCAA+CGG 0.679929 3_3:+45972705 Msa0454570:CDS
GCACACGGTCACACACACAT+GGG 0.680521 3_3:-45974140 None:intergenic
GAAGATTGTCGTTAAACACA+GGG 0.680691 3_3:-45972941 None:intergenic
AAGCAGTGTGTCGACAAATG+GGG 0.683408 3_3:+45973508 Msa0454570:CDS
GGGTGATACAACAGACTGTG+GGG 0.691737 3_3:-45972637 None:intergenic
TCTACTAAGACCATTAATGG+AGG 0.693051 3_3:+45972909 Msa0454570:CDS
GAAAGCTTCTCAGCATGCAG+TGG 0.698296 3_3:+45973443 Msa0454570:CDS
TGAGCTATGGATGCTTAGCA+GGG 0.703627 3_3:+45973001 Msa0454570:CDS
AATGTAGTATCCATCCAGTG+TGG 0.743417 3_3:+45974221 Msa0454570:three_prime_UTR
TGCTTCCATAATAGACACGG+GGG 0.772529 3_3:-45973895 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCACAACAAAAAAATTTA+GGG - chr3_3:45969442-45969461 None:intergenic 15.0%
!! AAATCACAACAAAAAAATTT+AGG - chr3_3:45969443-45969462 None:intergenic 15.0%
!! TTTCGTTATATGATTAAAAA+AGG - chr3_3:45969676-45969695 None:intergenic 15.0%
!! TAAAAAGTTACATCATTAAT+TGG - chr3_3:45971203-45971222 None:intergenic 15.0%
!! AGGTATTAAAAATTGTAAAT+TGG - chr3_3:45971263-45971282 None:intergenic 15.0%
!! GTATAATACTATTATGTATA+CGG - chr3_3:45971548-45971567 None:intergenic 15.0%
!!! TAGATTTTAGATTAAAAACT+GGG + chr3_3:45973974-45973993 Msa0454570:three_prime_UTR 15.0%
!!! ATTTAATTTTGAAGTCAATT+TGG + chr3_3:45974071-45974090 Msa0454570:three_prime_UTR 15.0%
!! AACAAACATTGTAATAAAGA+CGG - chr3_3:45969521-45969540 None:intergenic 20.0%
!! ATCAAATCAATGTCTTTATA+TGG + chr3_3:45969578-45969597 Msa0454570:intron 20.0%
!! ATTACACAGAAAATTGTTTA+AGG + chr3_3:45970321-45970340 Msa0454570:intron 20.0%
!!! AAAGAGTTTTGATGATAATA+AGG - chr3_3:45971283-45971302 None:intergenic 20.0%
!! ATTATCATCAAAACTCTTTA+AGG + chr3_3:45971284-45971303 Msa0454570:intron 20.0%
!!! GATTCATTATCATTTTTGTT+GGG - chr3_3:45971332-45971351 None:intergenic 20.0%
!!! AGATTCATTATCATTTTTGT+TGG - chr3_3:45971333-45971352 None:intergenic 20.0%
!!! TTTAATATTGTTGCATTTTC+AGG - chr3_3:45971387-45971406 None:intergenic 20.0%
!! CTATCCATTACAATTATATT+TGG + chr3_3:45971427-45971446 Msa0454570:intron 20.0%
!! GAATCCAAATATAATTGTAA+TGG - chr3_3:45971434-45971453 None:intergenic 20.0%
!! GTAATAATTGAAACAAAACT+AGG - chr3_3:45971908-45971927 None:intergenic 20.0%
!!! ATTAAAGTTTGTAGCTTTAT+TGG + chr3_3:45972079-45972098 Msa0454570:intron 20.0%
!!! AGTTATGTTAGTTTCTTTTT+TGG + chr3_3:45972354-45972373 Msa0454570:intron 20.0%
!!! AGTTATGTTAGTTTCTTTTT+TGG + chr3_3:45972354-45972373 Msa0454570:intron 20.0%
!!! AATATATGTGTTTTTAGTAC+TGG + chr3_3:45972445-45972464 Msa0454570:intron 20.0%
!!! GTAGATTTTAGATTAAAAAC+TGG + chr3_3:45973973-45973992 Msa0454570:three_prime_UTR 20.0%
!! AAATTTAGGGTTGTAAAGAA+GGG - chr3_3:45969429-45969448 None:intergenic 25.0%
!! AAAATTTAGGGTTGTAAAGA+AGG - chr3_3:45969430-45969449 None:intergenic 25.0%
! AGCTAATCAGAAAATATGAA+TGG - chr3_3:45969544-45969563 None:intergenic 25.0%
! TAAATTGTCTCATGAATTCT+TGG - chr3_3:45969606-45969625 None:intergenic 25.0%
! CGTTATATGATTAAAAAAGG+AGG - chr3_3:45969673-45969692 None:intergenic 25.0%
! TAATCAGATGAAATGTTTGT+GGG - chr3_3:45969835-45969854 None:intergenic 25.0%
!! ATTTCAAATTGGTTCTTCAT+AGG - chr3_3:45970651-45970670 None:intergenic 25.0%
!! AAAAGGAATGGATTTCAAAT+TGG - chr3_3:45970662-45970681 None:intergenic 25.0%
! AAAACATAGCAGAAAATTAG+TGG - chr3_3:45970870-45970889 None:intergenic 25.0%
!!! ATGATGTAACTTTTTAACTG+TGG + chr3_3:45971207-45971226 Msa0454570:intron 25.0%
! TAAAATACAAATGTAGCCTA+TGG + chr3_3:45971500-45971519 Msa0454570:intron 25.0%
! AATACTATTATGTATACGGT+AGG - chr3_3:45971544-45971563 None:intergenic 25.0%
! AGAAATGAATGATATGAGTA+GGG - chr3_3:45971629-45971648 None:intergenic 25.0%
!!! TGTGAACTTTGTTGTTTAAA+GGG - chr3_3:45971686-45971705 None:intergenic 25.0%
!!! TTGTGAACTTTGTTGTTTAA+AGG - chr3_3:45971687-45971706 None:intergenic 25.0%
! ATTTGATGAGGAATTTAAAG+TGG + chr3_3:45971949-45971968 Msa0454570:intron 25.0%
!! TTTGATGAGGAATTTAAAGT+GGG + chr3_3:45971950-45971969 Msa0454570:intron 25.0%
! ACTAGCCAAAATAATCAAAA+GGG - chr3_3:45972127-45972146 None:intergenic 25.0%
! AACTAGCCAAAATAATCAAA+AGG - chr3_3:45972128-45972147 None:intergenic 25.0%
!! TTTGGACAATTCTTGTATTT+TGG + chr3_3:45972155-45972174 Msa0454570:intron 25.0%
!! TTGAAAGTTTCAATTTTGAG+AGG + chr3_3:45972188-45972207 Msa0454570:intron 25.0%
!!! TTCAATTTTGAGAGGTTATT+AGG + chr3_3:45972196-45972215 Msa0454570:intron 25.0%
! ATTAACTGTCCTAAAATCTA+GGG - chr3_3:45972428-45972447 None:intergenic 25.0%
! TATTAACTGTCCTAAAATCT+AGG - chr3_3:45972429-45972448 None:intergenic 25.0%
!! TTTTGTGTTTTGCTAATACT+AGG + chr3_3:45972477-45972496 Msa0454570:intron 25.0%
! GTGTTAAAACTTGTATGAAT+TGG + chr3_3:45972555-45972574 Msa0454570:intron 25.0%
!! TTAATGGTTTCGGAATATTT+TGG + chr3_3:45973332-45973351 Msa0454570:CDS 25.0%
! TTAGATTAAAAACTGGGATT+TGG + chr3_3:45973980-45973999 Msa0454570:three_prime_UTR 25.0%
! CATTGACATTTAGATCATAA+AGG - chr3_3:45974367-45974386 None:intergenic 25.0%
! GATTGTGAAATTGAACTTTA+TGG + chr3_3:45974386-45974405 Msa0454570:three_prime_UTR 25.0%
AACATTGTAATAAAGACGGA+AGG - chr3_3:45969517-45969536 None:intergenic 30.0%
TGATTAAAAAAGGAGGTTGA+TGG - chr3_3:45969666-45969685 None:intergenic 30.0%
ATTTGAATGTGCGTTGAAAA+TGG - chr3_3:45969739-45969758 None:intergenic 30.0%
CTAATCAGATGAAATGTTTG+TGG - chr3_3:45969836-45969855 None:intergenic 30.0%
TATATGAACTCAGAAACTCT+TGG + chr3_3:45969897-45969916 Msa0454570:intron 30.0%
AAGATGAGAAAAACACAAGA+AGG + chr3_3:45969929-45969948 Msa0454570:intron 30.0%
AGATGAGAAAAACACAAGAA+GGG + chr3_3:45969930-45969949 Msa0454570:intron 30.0%
TAATCAGAATCTAAATGCAG+CGG + chr3_3:45970042-45970061 Msa0454570:intron 30.0%
AACACTTGATATACAATCAG+AGG + chr3_3:45970347-45970366 Msa0454570:intron 30.0%
AGATACAGACTCAATAACTT+AGG + chr3_3:45970387-45970406 Msa0454570:intron 30.0%
TCTTTCACACCTCTATATAA+AGG - chr3_3:45970542-45970561 None:intergenic 30.0%
GAAGTGCAACTATGTATATT+TGG - chr3_3:45971580-45971599 None:intergenic 30.0%
GAGAAATGAATGATATGAGT+AGG - chr3_3:45971630-45971649 None:intergenic 30.0%
!! ACTTTGTTGTTTAAAGGGAA+AGG - chr3_3:45971681-45971700 None:intergenic 30.0%
!!! ATGCTTTTTTACCTGAACTT+TGG - chr3_3:45971812-45971831 None:intergenic 30.0%
!!! CTTTTTTGTGTGATTTGATG+AGG + chr3_3:45971937-45971956 Msa0454570:intron 30.0%
! AATTTAAAGTGGGTTTGTGT+TGG + chr3_3:45971960-45971979 Msa0454570:intron 30.0%
!! TGTGACCCTTTTGATTATTT+TGG + chr3_3:45972119-45972138 Msa0454570:intron 30.0%
!!! TTTGGCTAGTTTTTAAGCTT+TGG + chr3_3:45972137-45972156 Msa0454570:intron 30.0%
! TTTGAGAGGTTATTAGGTTT+TGG + chr3_3:45972202-45972221 Msa0454570:intron 30.0%
! ATTCTGAATTTGCTTCTCAA+AGG + chr3_3:45972261-45972280 Msa0454570:intron 30.0%
!! TTAGCTAGTCTTAAGAATCT+TGG + chr3_3:45972504-45972523 Msa0454570:intron 30.0%
!! TAGCTAGTCTTAAGAATCTT+GGG + chr3_3:45972505-45972524 Msa0454570:intron 30.0%
CAATTACTGTTGTATGATCA+TGG + chr3_3:45972611-45972630 Msa0454570:CDS 30.0%
ATGTTTATATACATCAGGCT+AGG + chr3_3:45972805-45972824 Msa0454570:CDS 30.0%
TGTTTATATACATCAGGCTA+GGG + chr3_3:45972806-45972825 Msa0454570:CDS 30.0%
! CTCAATTTTATCCAAATCTC+TGG - chr3_3:45973279-45973298 None:intergenic 30.0%
AATATTCCGAAACCATTAAG+TGG - chr3_3:45973331-45973350 None:intergenic 30.0%
AACCAAAGAGGTAAAAAAAG+TGG + chr3_3:45973619-45973638 Msa0454570:CDS 30.0%
!!! ATCCACTTTTTTTACCTCTT+TGG - chr3_3:45973624-45973643 None:intergenic 30.0%
AAAAAAGTGGATGTCAAAGA+CGG + chr3_3:45973632-45973651 Msa0454570:CDS 30.0%
AGATCAGAACAATTGTATCT+TGG - chr3_3:45974103-45974122 None:intergenic 30.0%
AACATCAGAAGAAATACAGA+AGG - chr3_3:45974252-45974271 None:intergenic 30.0%
TGTATTTCTTCTGATGTTGT+AGG + chr3_3:45974254-45974273 Msa0454570:three_prime_UTR 30.0%
TCATAAAGGACAAAGAAAGA+AGG - chr3_3:45974353-45974372 None:intergenic 30.0%
CATGTGTTCTAGTGATAATA+TGG + chr3_3:45974427-45974446 Msa0454570:three_prime_UTR 30.0%
AGTCTCATTGAATAAGAGAG+CGG - chr3_3:45969764-45969783 None:intergenic 35.0%
CTTATTCAATGAGACTCATG+TGG + chr3_3:45969768-45969787 Msa0454570:intron 35.0%
GATGAGAAAAACACAAGAAG+GGG + chr3_3:45969931-45969950 Msa0454570:intron 35.0%
ATGAGAAAAACACAAGAAGG+GGG + chr3_3:45969932-45969951 Msa0454570:intron 35.0%
! AAGTGAGAAAGCTTCTGAAA+TGG + chr3_3:45970019-45970038 Msa0454570:intron 35.0%
ACGACACAAAGCAATTATAC+TGG + chr3_3:45970089-45970108 Msa0454570:intron 35.0%
TACTCTTAGTGAAATCTCCT+TGG - chr3_3:45970157-45970176 None:intergenic 35.0%
TTGATTGTGTTCTTGAGCAA+AGG - chr3_3:45970252-45970271 None:intergenic 35.0%
GTCTTCACTCCTTTATATAG+AGG + chr3_3:45970530-45970549 Msa0454570:intron 35.0%
CAAATCAGGCAAAAGGTTAT+TGG - chr3_3:45970620-45970639 None:intergenic 35.0%
! CAATAACCTTTTGCCTGATT+TGG + chr3_3:45970618-45970637 Msa0454570:intron 35.0%
! GAAATCCATTCCTTTTCCAA+AGG + chr3_3:45970666-45970685 Msa0454570:intron 35.0%
! ATGTTCCTTTGGAAAAGGAA+TGG - chr3_3:45970674-45970693 None:intergenic 35.0%
! CATAGATGTTCCTTTGGAAA+AGG - chr3_3:45970679-45970698 None:intergenic 35.0%
AAGAAAACAGCTCCAGTATA+CGG - chr3_3:45970711-45970730 None:intergenic 35.0%
! TGTTTTCTTGTCTTGTAGTG+TGG + chr3_3:45970722-45970741 Msa0454570:intron 35.0%
! TCATTTCAAAGGTGTGTTGA+AGG - chr3_3:45970834-45970853 None:intergenic 35.0%
CATTGCAACAGTCATTTCAA+AGG - chr3_3:45970845-45970864 None:intergenic 35.0%
! TGGTGAAATGACTTTTGATG+AGG + chr3_3:45970967-45970986 Msa0454570:intron 35.0%
ATACAAATGTAGCCTATGGT+TGG + chr3_3:45971504-45971523 Msa0454570:intron 35.0%
!! TTGTTGTTTAAAGGGAAAGG+AGG - chr3_3:45971678-45971697 None:intergenic 35.0%
TTCTTTCTGTAACACTACCT+CGG + chr3_3:45971715-45971734 Msa0454570:intron 35.0%
!! CTTTGAAACAACCAAAGTTC+AGG + chr3_3:45971798-45971817 Msa0454570:intron 35.0%
TTGTGTTGGAATTGTGTCAT+AGG + chr3_3:45971974-45971993 Msa0454570:intron 35.0%
AATTGTGTCATAGGTAGCAT+AGG + chr3_3:45971983-45972002 Msa0454570:intron 35.0%
!! TTTTCCTGTTTTTCCTCTCT+TGG + chr3_3:45972023-45972042 Msa0454570:intron 35.0%
! TTGTTCCTCTTGTGTTTTGT+TGG + chr3_3:45972225-45972244 Msa0454570:intron 35.0%
CAAAACCAACAAAACACAAG+AGG - chr3_3:45972233-45972252 None:intergenic 35.0%
! GAATTTGCTTCTCAAAGGTT+TGG + chr3_3:45972266-45972285 Msa0454570:intron 35.0%
! TCTGCTTAACCCTAGATTTT+AGG + chr3_3:45972416-45972435 Msa0454570:intron 35.0%
! ATTGACTTCAATGTCCTTAG+AGG - chr3_3:45972736-45972755 None:intergenic 35.0%
TCTAAGGACATTGAAGTCAA+TGG + chr3_3:45972735-45972754 Msa0454570:CDS 35.0%
CTAAGGACATTGAAGTCAAT+GGG + chr3_3:45972736-45972755 Msa0454570:CDS 35.0%
GCTCGATGTTTATATACATC+AGG + chr3_3:45972800-45972819 Msa0454570:CDS 35.0%
TAGCATAAACATCTTGCTTG+TGG - chr3_3:45972854-45972873 None:intergenic 35.0%
GTCTCTACTAAGACCATTAA+TGG + chr3_3:45972906-45972925 Msa0454570:CDS 35.0%
TCTACTAAGACCATTAATGG+AGG + chr3_3:45972909-45972928 Msa0454570:CDS 35.0%
GAAGATTGTCGTTAAACACA+GGG - chr3_3:45972944-45972963 None:intergenic 35.0%
ACAATCTTCGTCTCAATGTT+TGG + chr3_3:45972955-45972974 Msa0454570:CDS 35.0%
CAATCTTCGTCTCAATGTTT+GGG + chr3_3:45972956-45972975 Msa0454570:CDS 35.0%
TATCTTGAAGATCAGTTGCT+TGG + chr3_3:45973032-45973051 Msa0454570:CDS 35.0%
! CTTTCTCTAGTTTACCATTC+TGG - chr3_3:45973091-45973110 None:intergenic 35.0%
TCGTTTACAATCTTAGGATC+TGG - chr3_3:45973305-45973324 None:intergenic 35.0%
TGGTCTTCGTTTACAATCTT+AGG - chr3_3:45973311-45973330 None:intergenic 35.0%
TGTAAACGAAGACCACTTAA+TGG + chr3_3:45973316-45973335 Msa0454570:CDS 35.0%
GAAAATCATAGTTCAGAAGC+TGG + chr3_3:45973407-45973426 Msa0454570:CDS 35.0%
! TGAAACTTGTTCATGACTTG+GGG - chr3_3:45973597-45973616 None:intergenic 35.0%
! CTGAAACTTGTTCATGACTT+GGG - chr3_3:45973598-45973617 None:intergenic 35.0%
CTTGAATTTCCTGAAGTAGT+TGG - chr3_3:45973839-45973858 None:intergenic 35.0%
! CTTTTGCTTCCTTGGTTTAA+GGG + chr3_3:45973933-45973952 Msa0454570:three_prime_UTR 35.0%
! CACTGCTATTATCAGTTTTC+CGG - chr3_3:45974192-45974211 None:intergenic 35.0%
TTCTGATGTTGTAGGTTACA+GGG + chr3_3:45974262-45974281 Msa0454570:three_prime_UTR 35.0%
TAGGTGATAGGATATGACGT+TGG - chr3_3:45969270-45969289 None:intergenic 40.0%
! TAGTAAGTGTCGTAGGTGAT+AGG - chr3_3:45969282-45969301 None:intergenic 40.0%
! GTCAAGTTAGTAAGTGTCGT+AGG - chr3_3:45969289-45969308 None:intergenic 40.0%
CAGCAACAACCTTCTTCTAT+GGG - chr3_3:45969337-45969356 None:intergenic 40.0%
TCAGCAACAACCTTCTTCTA+TGG - chr3_3:45969338-45969357 None:intergenic 40.0%
TAGAAGAAGGTTGTTGCTGA+CGG + chr3_3:45969338-45969357 Msa0454570:intron 40.0%
ACGTTAAACGACCTTGAGTA+GGG - chr3_3:45969369-45969388 None:intergenic 40.0%
TCGTTTAACGTCATCATCCA+AGG + chr3_3:45969378-45969397 Msa0454570:intron 40.0%
TCATCCAAGGATCTTAGGTT+CGG + chr3_3:45969391-45969410 Msa0454570:intron 40.0%
TTAGGGTTGTAAAGAAGGGA+TGG - chr3_3:45969425-45969444 None:intergenic 40.0%
GTCTCATTGAATAAGAGAGC+GGG - chr3_3:45969763-45969782 None:intergenic 40.0%
TGAGAAAAACACAAGAAGGG+GGG + chr3_3:45969933-45969952 Msa0454570:intron 40.0%
CTCCTAAAAACTGAACACAC+TGG + chr3_3:45969987-45970006 Msa0454570:intron 40.0%
! GACCAGTGTGTTCAGTTTTT+AGG - chr3_3:45969992-45970011 None:intergenic 40.0%
! AAATCTCCTTGGAAGTGCAA+GGG - chr3_3:45970146-45970165 None:intergenic 40.0%
ATGCAGAACAATTTCAGCAG+AGG + chr3_3:45970452-45970471 Msa0454570:intron 40.0%
GAACAATTTCAGCAGAGGTT+TGG + chr3_3:45970457-45970476 Msa0454570:intron 40.0%
GGAGTGAAGACTTAGAGATT+TGG - chr3_3:45970521-45970540 None:intergenic 40.0%
CAACAACCAAATCAGGCAAA+AGG - chr3_3:45970627-45970646 None:intergenic 40.0%
CATAGGACAACAACCAAATC+AGG - chr3_3:45970634-45970653 None:intergenic 40.0%
TTCCAAAGGAACATCTATGC+AGG + chr3_3:45970680-45970699 Msa0454570:intron 40.0%
! ACAAAACAGAGTAGTGGAGA+AGG + chr3_3:45970747-45970766 Msa0454570:intron 40.0%
ACACTGCAAAAGCTGTCTAT+TGG - chr3_3:45970898-45970917 None:intergenic 40.0%
! TTACTGCTTCTGAAGACAAG+AGG - chr3_3:45971034-45971053 None:intergenic 40.0%
CTTCAGAAGCAGTAATCTTC+AGG + chr3_3:45971039-45971058 Msa0454570:intron 40.0%
GTATACGGTAGGTACTATGT+GGG - chr3_3:45971533-45971552 None:intergenic 40.0%
TGTATACGGTAGGTACTATG+TGG - chr3_3:45971534-45971553 None:intergenic 40.0%
GATATGAGTAGGGATCTATG+AGG - chr3_3:45971619-45971638 None:intergenic 40.0%
TGTTTAAAGGGAAAGGAGGA+TGG - chr3_3:45971674-45971693 None:intergenic 40.0%
GAATCCAAGAGAGGAAAAAC+AGG - chr3_3:45972030-45972049 None:intergenic 40.0%
! TTTTCCTCTCTTGGATTCTG+TGG + chr3_3:45972032-45972051 Msa0454570:intron 40.0%
TTTGCTTCTCAAAGGTTTGG+AGG + chr3_3:45972269-45972288 Msa0454570:intron 40.0%
!! TGTAGCTGTTTTGCTTTGAC+AGG + chr3_3:45972584-45972603 Msa0454570:intron 40.0%
GATGTTACCACACAAAGCAA+CGG + chr3_3:45972705-45972724 Msa0454570:CDS 40.0%
ACTTCAATGTCCTTAGAGGA+AGG - chr3_3:45972732-45972751 None:intergenic 40.0%
AACTATCATGTCAAATGCCG+AGG + chr3_3:45972764-45972783 Msa0454570:CDS 40.0%
TGTTCTCTGGATTACTTGTC+AGG - chr3_3:45972884-45972903 None:intergenic 40.0%
ACTAAGACCATTAATGGAGG+TGG + chr3_3:45972912-45972931 Msa0454570:CDS 40.0%
CGAAGATTGTCGTTAAACAC+AGG - chr3_3:45972945-45972964 None:intergenic 40.0%
!!! TCAGTTGCTTGGTTTTGCTT+TGG + chr3_3:45973043-45973062 Msa0454570:CDS 40.0%
GATCTGTTTCATTCTCCTTC+AGG + chr3_3:45973131-45973150 Msa0454570:CDS 40.0%
GACAATTGAACAAAGCCTGA+AGG - chr3_3:45973149-45973168 None:intergenic 40.0%
CAATTGTCCATTGCTTACAC+CGG + chr3_3:45973161-45973180 Msa0454570:CDS 40.0%
GCAGATATTGCCATAACATC+AGG - chr3_3:45973194-45973213 None:intergenic 40.0%
TATGGCAATATCTGCTATGC+CGG + chr3_3:45973199-45973218 Msa0454570:CDS 40.0%
CGAAGACCACTTAATGGTTT+CGG + chr3_3:45973322-45973341 Msa0454570:CDS 40.0%
!!! ATATTTTGGCATTTCGTGCG+AGG + chr3_3:45973346-45973365 Msa0454570:CDS 40.0%
! CCTGAAACTTGTTCATGACT+TGG - chr3_3:45973599-45973618 None:intergenic 40.0%
CCAAGTCATGAACAAGTTTC+AGG + chr3_3:45973596-45973615 Msa0454570:CDS 40.0%
ACAAGTTTCAGGAACCAAAG+AGG + chr3_3:45973607-45973626 Msa0454570:CDS 40.0%
GGCTTAGGGAATAAATCACT+CGG - chr3_3:45973683-45973702 None:intergenic 40.0%
TCAATATTCACGGTCACAAC+AGG - chr3_3:45973704-45973723 None:intergenic 40.0%
AGCGAAAATGAAGCTTCCTA+TGG + chr3_3:45973799-45973818 Msa0454570:CDS 40.0%
GGTTCACTTTCAATGTCCAT+AGG - chr3_3:45973818-45973837 None:intergenic 40.0%
GAAAGTGAACCAACTACTTC+AGG + chr3_3:45973827-45973846 Msa0454570:CDS 40.0%
TCTGCTTCCATAATAGACAC+GGG - chr3_3:45973900-45973919 None:intergenic 40.0%
CTCTGCTTCCATAATAGACA+CGG - chr3_3:45973901-45973920 None:intergenic 40.0%
! GCTTTTGCTTCCTTGGTTTA+AGG + chr3_3:45973932-45973951 Msa0454570:three_prime_UTR 40.0%
TCCTTGGTTTAAGGGAATAC+AGG + chr3_3:45973941-45973960 Msa0454570:three_prime_UTR 40.0%
CTCGGTCATTAGATGAAGAT+TGG + chr3_3:45974030-45974049 Msa0454570:three_prime_UTR 40.0%
TTTGTTGAGCGTAGGGAATT+CGG + chr3_3:45974164-45974183 Msa0454570:three_prime_UTR 40.0%
AATGTAGTATCCATCCAGTG+TGG + chr3_3:45974221-45974240 Msa0454570:three_prime_UTR 40.0%
CTTCTGATGTTGTAGGTTAC+AGG + chr3_3:45974261-45974280 Msa0454570:three_prime_UTR 40.0%
GCCAATCAAGACCCTTAAGT+CGG + chr3_3:45969242-45969261 Msa0454570:intron 45.0%
TCCGACTTAAGGGTCTTGAT+TGG - chr3_3:45969246-45969265 None:intergenic 45.0%
TGACGTTGGATCCGACTTAA+GGG - chr3_3:45969256-45969275 None:intergenic 45.0%
ATGACGTTGGATCCGACTTA+AGG - chr3_3:45969257-45969276 None:intergenic 45.0%
GACGTTAAACGACCTTGAGT+AGG - chr3_3:45969370-45969389 None:intergenic 45.0%
CGTCATCATCCAAGGATCTT+AGG + chr3_3:45969386-45969405 Msa0454570:intron 45.0%
CATCCAAGGATCTTAGGTTC+GGG + chr3_3:45969392-45969411 Msa0454570:intron 45.0%
! GGGGGGTTGAATTGTGTTTT+TGG + chr3_3:45969950-45969969 Msa0454570:intron 45.0%
!! TACTGGTTCCTTCCACAATC+CGG + chr3_3:45970106-45970125 Msa0454570:intron 45.0%
TACTACTTCCGGATTGTGGA+AGG - chr3_3:45970117-45970136 None:intergenic 45.0%
ACTGTACTACTTCCGGATTG+TGG - chr3_3:45970121-45970140 None:intergenic 45.0%
! AATCTCCTTGGAAGTGCAAG+GGG - chr3_3:45970145-45970164 None:intergenic 45.0%
! GAAATCTCCTTGGAAGTGCA+AGG - chr3_3:45970147-45970166 None:intergenic 45.0%
TGCAAAGTGTGCTTGAGCAA+AGG - chr3_3:45970221-45970240 None:intergenic 45.0%
ACAACGACTCTTTGATGTGC+TGG - chr3_3:45970580-45970599 None:intergenic 45.0%
GTGGACACAAAACAGAGTAG+TGG + chr3_3:45970741-45970760 Msa0454570:intron 45.0%
! AAACAGAGTAGTGGAGAAGG+TGG + chr3_3:45970750-45970769 Msa0454570:intron 45.0%
! GAAGGCATGTGCTTGCAATT+TGG - chr3_3:45970816-45970835 None:intergenic 45.0%
TCCAGTTGATCTTCAGCTTC+TGG + chr3_3:45970947-45970966 Msa0454570:intron 45.0%
ACCAGAAGCTGAAGATCAAC+TGG - chr3_3:45970951-45970970 None:intergenic 45.0%
! TAACGCAGCTTCTGATGATG+TGG + chr3_3:45971000-45971019 Msa0454570:intron 45.0%
!! TTCAGGAGCACCATTTCTTC+AGG + chr3_3:45971056-45971075 Msa0454570:intron 45.0%
! GTAAAGCGCTCCTGAAGAAA+TGG - chr3_3:45971069-45971088 None:intergenic 45.0%
! TTCAGGAGCAGTTTGACTTC+AGG + chr3_3:45971093-45971112 Msa0454570:intron 45.0%
TGAAGCTTAGACGCTTCTGA+AGG - chr3_3:45971148-45971167 None:intergenic 45.0%
CAGGATTCGATTGAGTTCGT+TGG - chr3_3:45971368-45971387 None:intergenic 45.0%
CTATGTGGGAAACCAACCAT+AGG - chr3_3:45971519-45971538 None:intergenic 45.0%
AGGGAAAGGAGGATGGATAT+AGG - chr3_3:45971667-45971686 None:intergenic 45.0%
GTCAAAGTTGTGTGTGTGTG+TGG - chr3_3:45971779-45971798 None:intergenic 45.0%
ACTTCCACAGAATCCAAGAG+AGG - chr3_3:45972039-45972058 None:intergenic 45.0%
AGGGTGATACAACAGACTGT+GGG - chr3_3:45972641-45972660 None:intergenic 45.0%
AAGGGTGATACAACAGACTG+TGG - chr3_3:45972642-45972661 None:intergenic 45.0%
!! ACCCTTTAGAACCTCAGTCT+TGG + chr3_3:45972656-45972675 Msa0454570:CDS 45.0%
!! CCCAAGACTGAGGTTCTAAA+GGG - chr3_3:45972660-45972679 None:intergenic 45.0%
!! CCCTTTAGAACCTCAGTCTT+GGG + chr3_3:45972657-45972676 Msa0454570:CDS 45.0%
! ACCCAAGACTGAGGTTCTAA+AGG - chr3_3:45972661-45972680 None:intergenic 45.0%
GGACATTGAAGTCAATGGGA+AGG + chr3_3:45972740-45972759 Msa0454570:CDS 45.0%
TTAGTAGAGACGCTGTTCTC+TGG - chr3_3:45972897-45972916 None:intergenic 45.0%
AGACCATTAATGGAGGTGGA+AGG + chr3_3:45972916-45972935 Msa0454570:CDS 45.0%
GTTCCTTCCACCTCCATTAA+TGG - chr3_3:45972922-45972941 None:intergenic 45.0%
CGTCTCTCAAATGTGAGCTA+TGG + chr3_3:45972988-45973007 Msa0454570:CDS 45.0%
TGAGCTATGGATGCTTAGCA+GGG + chr3_3:45973001-45973020 Msa0454570:CDS 45.0%
!! TGGACTAGCACTTCTGACAA+CGG - chr3_3:45973071-45973090 None:intergenic 45.0%
!! TCAGAAGTGCTAGTCCAGAA+TGG + chr3_3:45973074-45973093 Msa0454570:CDS 45.0%
CATAACATCAGGTGTAGCAC+CGG - chr3_3:45973183-45973202 None:intergenic 45.0%
ATGGCAATATCTGCTATGCC+GGG + chr3_3:45973200-45973219 Msa0454570:CDS 45.0%
CTCGGAAACATGTGAGTCAT+TGG + chr3_3:45973253-45973272 Msa0454570:CDS 45.0%
TGAGTCATTGGCCAGAGATT+TGG + chr3_3:45973265-45973284 Msa0454570:CDS 45.0%
! CAAGCAGTGTGTCGACAAAT+GGG + chr3_3:45973507-45973526 Msa0454570:CDS 45.0%
! AAGCAGTGTGTCGACAAATG+GGG + chr3_3:45973508-45973527 Msa0454570:CDS 45.0%
TCTGAGCTTTCATGAGCAGA+AGG - chr3_3:45973542-45973561 None:intergenic 45.0%
ATATCCTGCTGAACCATCTG+CGG - chr3_3:45973734-45973753 None:intergenic 45.0%
! GGGTTAGCGTTCTTAGTTTG+CGG - chr3_3:45973878-45973897 None:intergenic 45.0%
TGCTTCCATAATAGACACGG+GGG - chr3_3:45973898-45973917 None:intergenic 45.0%
CTGCTTCCATAATAGACACG+GGG - chr3_3:45973899-45973918 None:intergenic 45.0%
! CTTCTGAGCTTTTGCTTCCT+TGG + chr3_3:45973925-45973944 Msa0454570:exon 45.0%
GCCTGTATTCCCTTAAACCA+AGG - chr3_3:45973945-45973964 None:intergenic 45.0%
TGGTTTAAGGGAATACAGGC+AGG + chr3_3:45973945-45973964 Msa0454570:three_prime_UTR 45.0%
TTCATGACTGCGTGACTACA+GGG - chr3_3:45974009-45974028 None:intergenic 45.0%
ATTCATGACTGCGTGACTAC+AGG - chr3_3:45974010-45974029 None:intergenic 45.0%
AGTCACGCAGTCATGAATCT+CGG + chr3_3:45974012-45974031 Msa0454570:three_prime_UTR 45.0%
CACACATGGGATCTGATCAT+TGG - chr3_3:45974130-45974149 None:intergenic 45.0%
! CTACGCTCAACAAAAGCACA+CGG - chr3_3:45974158-45974177 None:intergenic 45.0%
! GTGTGCTTTTGTTGAGCGTA+GGG + chr3_3:45974157-45974176 Msa0454570:three_prime_UTR 45.0%
TTGTTGAGCGTAGGGAATTC+GGG + chr3_3:45974165-45974184 Msa0454570:three_prime_UTR 45.0%
TACAGAAGGAGAAACCACAC+TGG - chr3_3:45974238-45974257 None:intergenic 45.0%
TTGACCATCAGAGTGTGTGC+AGG + chr3_3:45969304-45969323 Msa0454570:intron 50.0%
!! TGACGGAAGTACCCTACTCA+AGG + chr3_3:45969355-45969374 Msa0454570:intron 50.0%
CTTCCCGAACCTAAGATCCT+TGG - chr3_3:45969398-45969417 None:intergenic 50.0%
AAGGGGGACTGTACTACTTC+CGG - chr3_3:45970128-45970147 None:intergenic 50.0%
! ATCTCCTTGGAAGTGCAAGG+GGG - chr3_3:45970144-45970163 None:intergenic 50.0%
GAGCAAAGGAAGTCTCTTGC+AGG - chr3_3:45970207-45970226 None:intergenic 50.0%
CTTGCAGTTGTGCTTGAGCA+GGG - chr3_3:45970282-45970301 None:intergenic 50.0%
TCTTGCAGTTGTGCTTGAGC+AGG - chr3_3:45970283-45970302 None:intergenic 50.0%
CGCCTGCATAGATGTTCCTT+TGG - chr3_3:45970685-45970704 None:intergenic 50.0%
! GCTTCTGATGATGTGGCTTC+TGG + chr3_3:45971007-45971026 Msa0454570:intron 50.0%
!! AGGAGCGCTTTACTCTCTTC+AGG + chr3_3:45971076-45971095 Msa0454570:intron 50.0%
!! AGGAGCGCTTTACTCTCTTC+AGG + chr3_3:45971076-45971095 Msa0454570:intron 50.0%
ACTACCTCGGTTCAATCACC+TGG + chr3_3:45971728-45971747 Msa0454570:intron 50.0%
CTACCTCGGTTCAATCACCT+GGG + chr3_3:45971729-45971748 Msa0454570:intron 50.0%
ACAGAATCAGAGCATGACCC+AGG - chr3_3:45971749-45971768 None:intergenic 50.0%
GGGTGATACAACAGACTGTG+GGG - chr3_3:45972640-45972659 None:intergenic 50.0%
TAGAACCTCAGTCTTGGGTG+AGG + chr3_3:45972662-45972681 Msa0454570:CDS 50.0%
AGAACCTCAGTCTTGGGTGA+GGG + chr3_3:45972663-45972682 Msa0454570:CDS 50.0%
AAGCAACGGTCCTTCCTCTA+AGG + chr3_3:45972719-45972738 Msa0454570:CDS 50.0%
TCAAATGCCGAGGAATGCGT+TGG + chr3_3:45972774-45972793 Msa0454570:CDS 50.0%
GTGAGCTATGGATGCTTAGC+AGG + chr3_3:45973000-45973019 Msa0454570:CDS 50.0%
!! TGTAGCACCGGTGTAAGCAA+TGG - chr3_3:45973171-45973190 None:intergenic 50.0%
!! CGGTGCTACACCTGATGTTA+TGG + chr3_3:45973181-45973200 Msa0454570:CDS 50.0%
TGGCAATATCTGCTATGCCG+GGG + chr3_3:45973201-45973220 Msa0454570:CDS 50.0%
ACATGTCACTCAGCAGGACT+CGG + chr3_3:45973235-45973254 Msa0454570:CDS 50.0%
GACTCAGTGCTCTGATAGCT+TGG + chr3_3:45973370-45973389 Msa0454570:CDS 50.0%
AGAAGCTGGTGTTCGTCTTG+TGG + chr3_3:45973421-45973440 Msa0454570:CDS 50.0%
GAAAGCTTCTCAGCATGCAG+TGG + chr3_3:45973443-45973462 Msa0454570:CDS 50.0%
CTTGGTGGAGACTCAACCTT+AGG - chr3_3:45973491-45973510 None:intergenic 50.0%
TTTGTCGACACACTGCTTGG+TGG - chr3_3:45973506-45973525 None:intergenic 50.0%
CCATTTGTCGACACACTGCT+TGG - chr3_3:45973509-45973528 None:intergenic 50.0%
! CCAAGCAGTGTGTCGACAAA+TGG + chr3_3:45973506-45973525 Msa0454570:CDS 50.0%
ATCACTCGGAGCAACACTTG+AGG - chr3_3:45973669-45973688 None:intergenic 50.0%
TCACGGTCACAACAGGCTTA+GGG - chr3_3:45973697-45973716 None:intergenic 50.0%
TTCACGGTCACAACAGGCTT+AGG - chr3_3:45973698-45973717 None:intergenic 50.0%
! CGGCTCTGGCTCAATATTCA+CGG - chr3_3:45973714-45973733 None:intergenic 50.0%
GCTAACCCCCGTGTCTATTA+TGG + chr3_3:45973890-45973909 Msa0454570:CDS 50.0%
! CGTGTGCTTTTGTTGAGCGT+AGG + chr3_3:45974156-45974175 Msa0454570:three_prime_UTR 50.0%
GAAGGAGAAACCACACTGGA+TGG - chr3_3:45974234-45974253 None:intergenic 50.0%
AATATGGCCCCACGTTCACA+TGG + chr3_3:45974443-45974462 Msa0454570:three_prime_UTR 50.0%
GTGTTCACCATGTGAACGTG+GGG - chr3_3:45974453-45974472 None:intergenic 50.0%
GGCGCACAACCCATAGAAGA+AGG + chr3_3:45969325-45969344 Msa0454570:intron 55.0%
ATGCAGGCGAAGCCGTATAC+TGG + chr3_3:45970696-45970715 Msa0454570:intron 55.0%
TGACCCAGGTGATTGAACCG+AGG - chr3_3:45971735-45971754 None:intergenic 55.0%
! GGAAGGACCGTTGCTTTGTG+TGG - chr3_3:45972715-45972734 None:intergenic 55.0%
GAGCACTCCAACGCATTCCT+CGG - chr3_3:45972784-45972803 None:intergenic 55.0%
TGCGCAAGTGGAACCTCCTA+AGG + chr3_3:45973472-45973491 Msa0454570:CDS 55.0%
GGTGGAGACTCAACCTTAGG+AGG - chr3_3:45973488-45973507 None:intergenic 55.0%
TATTGAGCCAGAGCCGCAGA+TGG + chr3_3:45973718-45973737 Msa0454570:CDS 55.0%
GCACACGGTCACACACACAT+GGG - chr3_3:45974143-45974162 None:intergenic 55.0%
AGCACACGGTCACACACACA+TGG - chr3_3:45974144-45974163 None:intergenic 55.0%
TGCGCCTGCACACACTCTGA+TGG - chr3_3:45969311-45969330 None:intergenic 60.0%
CAGTCCCCCTTGCACTTCCA+AGG + chr3_3:45970137-45970156 Msa0454570:intron 60.0%
CTCACCCTCACCCAAGACTG+AGG - chr3_3:45972670-45972689 None:intergenic 60.0%
GGCTGCACATGTCACTCAGC+AGG + chr3_3:45973229-45973248 Msa0454570:CDS 60.0%
CAGTGGTGAGTCTGCGCAAG+TGG + chr3_3:45973460-45973479 Msa0454570:CDS 60.0%
TGCTGAACCATCTGCGGCTC+TGG - chr3_3:45973728-45973747 None:intergenic 60.0%
AGAGCCGCAGATGGTTCAGC+AGG + chr3_3:45973727-45973746 Msa0454570:CDS 60.0%
GAGCGTAGGGAATTCGGGTC+CGG + chr3_3:45974170-45974189 Msa0454570:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 45969227 45974472 45969227 ID=Msa0454570;Name=Msa0454570
chr3_3 mRNA 45969227 45974472 45969227 ID=Msa0454570-mRNA-1;Parent=Msa0454570;Name=Msa0454570-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0.5|0.5|0|0.5|2|541|443
chr3_3 exon 45969227 45969232 45969227 ID=Msa0454570-mRNA-1:exon:8542;Parent=Msa0454570-mRNA-1
chr3_3 exon 45972606 45974472 45972606 ID=Msa0454570-mRNA-1:exon:8543;Parent=Msa0454570-mRNA-1
chr3_3 CDS 45969227 45969232 45969227 ID=Msa0454570-mRNA-1:cds;Parent=Msa0454570-mRNA-1
chr3_3 CDS 45972606 45973931 45972606 ID=Msa0454570-mRNA-1:cds;Parent=Msa0454570-mRNA-1
chr3_3 three_prime_UTR 45973932 45974472 45973932 ID=Msa0454570-mRNA-1:three_prime_utr;Parent=Msa0454570-mRNA-1
Gene Sequence

>Msa0454570

ATGATGGTTCTCAATTACTGTTGTATGATCATGGATTCCCCACAGTCTGTTGTATCACCCTTTAGAACCTCAGTCTTGGGTGAGGGTGAGAAGCACAAGTCTGATGATGTTACCACACAAAGCAACGGTCCTTCCTCTAAGGACATTGAAGTCAATGGGAAGGAAACTATCATGTCAAATGCCGAGGAATGCGTTGGAGTGCTCGATGTTTATATACATCAGGCTAGGGACATTCAGAATATTTGCATATACCACAAGCAAGATGTTTATGCTAAGATTTACCTGACAAGTAATCCAGAGAACAGCGTCTCTACTAAGACCATTAATGGAGGTGGAAGGAACCCTGTGTTTAACGACAATCTTCGTCTCAATGTTTGGGATGTTGATTCGTCTCTCAAATGTGAGCTATGGATGCTTAGCAGGGTGAAGAATTATCTTGAAGATCAGTTGCTTGGTTTTGCTTTGGTGCCGTTGTCAGAAGTGCTAGTCCAGAATGGTAAACTAGAGAAAGAGTTTTCTCTTTCTTCAACTGATCTGTTTCATTCTCCTTCAGGCTTTGTTCAATTGTCCATTGCTTACACCGGTGCTACACCTGATGTTATGGCAATATCTGCTATGCCGGGGAAAGTGGCTGCACATGTCACTCAGCAGGACTCGGAAACATGTGAGTCATTGGCCAGAGATTTGGATAAAATTGAGTTTCCAGATCCTAAGATTGTAAACGAAGACCACTTAATGGTTTCGGAATATTTTGGCATTTCGTGCGAGGAGACTCAGTGCTCTGATAGCTTGGCAACTTCTGATGCTGAAAATCATAGTTCAGAAGCTGGTGTTCGTCTTGTGGAAAGCTTCTCAGCATGCAGTGGTGAGTCTGCGCAAGTGGAACCTCCTAAGGTTGAGTCTCCACCAAGCAGTGTGTCGACAAATGGGGTTTCTTCTCCTTCTGCTCATGAAAGCTCAGAATCATCTGATGCTGCAGCAGCAGCTTCTAAGTCCCCAAGTCATGAACAAGTTTCAGGAACCAAAGAGGTAAAAAAAGTGGATGTCAAAGACGGTGAGAGTGATTCCTCAAGTGTTGCTCCGAGTGATTTATTCCCTAAGCCTGTTGTGACCGTGAATATTGAGCCAGAGCCGCAGATGGTTCAGCAGGATATAGTTGACATGTACATGAAAAGCATGCAGCAATTTACTGAGTCATTAGCGAAAATGAAGCTTCCTATGGACATTGAAAGTGAACCAACTACTTCAGGAAATTCAAGTACTGAGCAGAAACTACCGCAAACTAAGAACGCTAACCCCCGTGTCTATTATGGAAGCAGAGCTTTCTTCTGA
Protein sequence

>Msa0454570

MMVLNYCCMIMDSPQSVVSPFRTSVLGEGEKHKSDDVTTQSNGPSSKDIEVNGKETIMSNAEECVGVLDVYIHQARDIQNICIYHKQDVYAKIYLTSNPENSVSTKTINGGGRNPVFNDNLRLNVWDVDSSLKCELWMLSRVKNYLEDQLLGFALVPLSEVLVQNGKLEKEFSLSSTDLFHSPSGFVQLSIAYTGATPDVMAISAMPGKVAAHVTQQDSETCESLARDLDKIEFPDPKIVNEDHLMVSEYFGISCEETQCSDSLATSDAENHSSEAGVRLVESFSACSGESAQVEPPKVESPPSSVSTNGVSSPSAHESSESSDAAAAASKSPSHEQVSGTKEVKKVDVKDGESDSSSVAPSDLFPKPVVTVNIEPEPQMVQQDIVDMYMKSMQQFTESLAKMKLPMDIESEPTTSGNSSTEQKLPQTKNANPRVYYGSRAFF*