AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0172310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0172310 MtrunA17_Chr1g0190931 91.489 188 16 0 1 188 51 238 1.39e-127 358
Msa0172310 MtrunA17_Chr8g0348281 31.298 131 83 3 48 175 91 217 9.35e-19 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0172310 AT3G04890.1 58.857 175 72 0 7 181 33 207 3.34e-71 215
Msa0172310 AT3G04890.3 58.857 175 72 0 7 181 37 211 5.45e-71 214
Msa0172310 AT3G04890.2 53.416 161 75 0 7 167 33 193 5.19e-57 179
Msa0172310 AT3G04890.4 53.416 161 75 0 7 167 37 197 7.61e-57 179
Msa0172310 AT2G46100.1 30.556 180 108 6 11 182 60 230 2.64e-21 87.8

Find 59 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATCATCAATACTTGAAAC+TGG 0.314009 1_4:-57303610 None:intergenic
GATCCAACTATTAAATTTAG+TGG 0.322543 1_4:+57303891 Msa0172310:CDS
CTAGTTATGCATATGCTTAT+CGG 0.325160 1_4:-57304871 None:intergenic
GCATAGATACCTTGTTTGTT+GGG 0.356498 1_4:-57303227 None:intergenic
GGCATAGATACCTTGTTTGT+TGG 0.370365 1_4:-57303228 None:intergenic
TGCGTGCATCTTGGAAATTA+AGG 0.376993 1_4:+57304359 Msa0172310:CDS
TTACCACTAAATTTAATAGT+TGG 0.387007 1_4:-57303894 None:intergenic
TGCTTAGAAGTTAGAAGAAT+AGG 0.394568 1_4:-57302830 None:intergenic
CTATATAAATTAAGAATCAT+AGG 0.403118 1_4:-57304771 None:intergenic
TGATGTTCTAATCATCATAA+AGG 0.421681 1_4:+57303627 Msa0172310:CDS
TGGAAGTGTAAGGCTATTGT+AGG 0.430972 1_4:-57302930 None:intergenic
GTTGAATGTCATGGCGGGTG+AGG 0.439811 1_4:+57304716 Msa0172310:exon
ATAGTTGTTAATGACGCAAT+TGG 0.441004 1_4:+57304812 Msa0172310:three_prime_UTR
CATAAAGAAGTCGAATGAAA+TGG 0.444668 1_4:+57302878 Msa0172310:intron
ATAATGCAGGATGTTGAATC+TGG 0.446617 1_4:+57304325 Msa0172310:intron
AGGCCTCTGATTGCTATTGA+TGG 0.449120 1_4:+57304485 Msa0172310:CDS
CGATAAGCATATGCATAACT+AGG 0.472187 1_4:+57304872 Msa0172310:three_prime_UTR
CGCCATGACATTCAACCACC+TGG 0.479324 1_4:-57304709 None:intergenic
GATCTTTAGTAGTCTAATTG+AGG 0.482759 1_4:-57304210 None:intergenic
TTGAATGTCATGGCGGGTGA+GGG 0.513980 1_4:+57304717 Msa0172310:exon
ATTGAGGCACAGTCGAAGAA+TGG 0.515153 1_4:-57304194 None:intergenic
GGAAGTGTAAGGCTATTGTA+GGG 0.518951 1_4:-57302929 None:intergenic
AGATACCTTGTTTGTTGGGG+AGG 0.519985 1_4:-57303223 None:intergenic
CTGAATACTGATAGATGAGA+AGG 0.520191 1_4:-57304950 None:intergenic
GGACGCCACCCTTGCTGTTG+CGG 0.524042 1_4:+57303059 Msa0172310:intron
GTTTAAGCAATGTTTACTAC+AGG 0.527462 1_4:+57304917 Msa0172310:three_prime_UTR
TAGACTACTAAAGATCGAAA+AGG 0.538132 1_4:+57304217 Msa0172310:CDS
CATAGATACCTTGTTTGTTG+GGG 0.538359 1_4:-57303226 None:intergenic
AGACATTTATTACCTGGGAG+TGG 0.539869 1_4:-57302950 None:intergenic
CATCATCAATACTTGAAACT+GGG 0.541779 1_4:-57303609 None:intergenic
GGGGAGGAGAGAAAAGCCTC+AGG 0.553407 1_4:-57303207 None:intergenic
GCGGAGTGACGGAGCTCCTG+AGG 0.554237 1_4:+57303191 Msa0172310:CDS
TCGTTCGGCATATTGAGAGT+TGG 0.563467 1_4:+57304638 Msa0172310:CDS
GATTGCAGTGAGCGGAGTGA+CGG 0.565614 1_4:+57303180 Msa0172310:CDS
AGCCTTACACTTCCACTCCC+AGG 0.566168 1_4:+57302938 Msa0172310:five_prime_UTR
AGAAAGAAACAAAACCCCTC+AGG 0.570589 1_4:+57303150 Msa0172310:CDS
AACCAGGTGGTTGAATGTCA+TGG 0.570801 1_4:+57304707 Msa0172310:exon
TGTTTCCGCAACAGCAAGGG+TGG 0.575559 1_4:-57303064 None:intergenic
CTGCAATCTTCAGAACCTGA+GGG 0.576531 1_4:-57303165 None:intergenic
TGTTGTTTCCGCAACAGCAA+GGG 0.587584 1_4:-57303067 None:intergenic
TCTCTCCTCCCCAACAAACA+AGG 0.591145 1_4:+57303218 Msa0172310:CDS
GTGTTGTTTCCGCAACAGCA+AGG 0.594278 1_4:-57303068 None:intergenic
GACTTGTGCAATTTATAACA+TGG 0.596814 1_4:+57303123 Msa0172310:exon
TACCTGGGAGTGGAAGTGTA+AGG 0.601591 1_4:-57302940 None:intergenic
CATTAACAACTATATACAGT+AGG 0.611061 1_4:-57304802 None:intergenic
GGACCAACTTAAAACTTCCG+TGG 0.611426 1_4:+57304462 Msa0172310:intron
ACTGATAGATGAGAAGGGAA+AGG 0.611669 1_4:-57304944 None:intergenic
TGAATACTGATAGATGAGAA+GGG 0.612663 1_4:-57304949 None:intergenic
ATAGCAATCAGAGGCCTCCA+CGG 0.621582 1_4:-57304479 None:intergenic
AGGTGGTTGAATGTCATGGC+GGG 0.631232 1_4:+57304711 Msa0172310:exon
ACTGCAATCTTCAGAACCTG+AGG 0.643213 1_4:-57303166 None:intergenic
ATCATCAATACTTGAAACTG+GGG 0.643651 1_4:-57303608 None:intergenic
GCACAAGTCTTTCTACTACA+CGG 0.651194 1_4:-57303109 None:intergenic
GTTCTGAAGATTGCAGTGAG+CGG 0.663984 1_4:+57303172 Msa0172310:CDS
TGCAATCTTCAGAACCTGAG+GGG 0.670652 1_4:-57303164 None:intergenic
GAAGTGTAAGGCTATTGTAG+GGG 0.673629 1_4:-57302928 None:intergenic
CTTCCATCAATAGCAATCAG+AGG 0.678084 1_4:-57304488 None:intergenic
CCAACTTAAAACTTCCGTGG+AGG 0.722693 1_4:+57304465 Msa0172310:CDS
CAGGTGGTTGAATGTCATGG+CGG 0.757865 1_4:+57304710 Msa0172310:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATAAATTAATAATGC+AGG + chr1_4:57304312-57304331 Msa0172310:intron 10.0%
!! ATTATATAAATTAATAATGC+AGG + chr1_4:57304312-57304331 Msa0172310:intron 10.0%
!! TGAAAAAATATTTGATAAGA+GGG - chr1_4:57303714-57303733 None:intergenic 15.0%
!! ATGAAAAAATATTTGATAAG+AGG - chr1_4:57303715-57303734 None:intergenic 15.0%
!! CTATATAAATTAAGAATCAT+AGG - chr1_4:57304774-57304793 None:intergenic 15.0%
!! TGAAAAAATATTTGATAAGA+GGG - chr1_4:57303714-57303733 None:intergenic 15.0%
!! ATGAAAAAATATTTGATAAG+AGG - chr1_4:57303715-57303734 None:intergenic 15.0%
!! CTATATAAATTAAGAATCAT+AGG - chr1_4:57304774-57304793 None:intergenic 15.0%
!! TTCTTTATGATTCAATTCAT+TGG - chr1_4:57302867-57302886 None:intergenic 20.0%
!! AATAAAGACATTTATTACCT+GGG - chr1_4:57302958-57302977 None:intergenic 20.0%
!! AACACTGCATATTAATAAAT+TGG - chr1_4:57303554-57303573 None:intergenic 20.0%
!! TTACCACTAAATTTAATAGT+TGG - chr1_4:57303897-57303916 None:intergenic 20.0%
!!! TTAAAGATTTGAAACATCTA+GGG - chr1_4:57304040-57304059 None:intergenic 20.0%
!!! TTTAAAGATTTGAAACATCT+AGG - chr1_4:57304041-57304060 None:intergenic 20.0%
!! TTCTTTATGATTCAATTCAT+TGG - chr1_4:57302867-57302886 None:intergenic 20.0%
!! AATAAAGACATTTATTACCT+GGG - chr1_4:57302958-57302977 None:intergenic 20.0%
!! AACACTGCATATTAATAAAT+TGG - chr1_4:57303554-57303573 None:intergenic 20.0%
!! TTACCACTAAATTTAATAGT+TGG - chr1_4:57303897-57303916 None:intergenic 20.0%
!!! TTAAAGATTTGAAACATCTA+GGG - chr1_4:57304040-57304059 None:intergenic 20.0%
!!! TTTAAAGATTTGAAACATCT+AGG - chr1_4:57304041-57304060 None:intergenic 20.0%
! GAATAAAGACATTTATTACC+TGG - chr1_4:57302959-57302978 None:intergenic 25.0%
! ATAAAAGTAGTTGACACATA+TGG - chr1_4:57303378-57303397 None:intergenic 25.0%
! TGATGTTCTAATCATCATAA+AGG + chr1_4:57303627-57303646 Msa0172310:CDS 25.0%
!! TCTTACTTTGTTTGAGATTT+AGG + chr1_4:57303825-57303844 Msa0172310:intron 25.0%
!! CTTACTTTGTTTGAGATTTA+GGG + chr1_4:57303826-57303845 Msa0172310:intron 25.0%
! GATCCAACTATTAAATTTAG+TGG + chr1_4:57303891-57303910 Msa0172310:CDS 25.0%
! AGACTAGCATAAGATATTAT+AGG - chr1_4:57303935-57303954 None:intergenic 25.0%
! AAACAACTATAAGAGCTAAA+AGG + chr1_4:57304059-57304078 Msa0172310:intron 25.0%
!!! ATTTTCAAGTTTGAAAAACC+AGG + chr1_4:57304691-57304710 Msa0172310:CDS 25.0%
! CATTAACAACTATATACAGT+AGG - chr1_4:57304805-57304824 None:intergenic 25.0%
! AGATGCTTAGAAAAATATAC+AGG - chr1_4:57304840-57304859 None:intergenic 25.0%
! GAATAAAGACATTTATTACC+TGG - chr1_4:57302959-57302978 None:intergenic 25.0%
! ATAAAAGTAGTTGACACATA+TGG - chr1_4:57303378-57303397 None:intergenic 25.0%
! TGATGTTCTAATCATCATAA+AGG + chr1_4:57303627-57303646 Msa0172310:CDS 25.0%
!! TCTTACTTTGTTTGAGATTT+AGG + chr1_4:57303825-57303844 Msa0172310:intron 25.0%
!! CTTACTTTGTTTGAGATTTA+GGG + chr1_4:57303826-57303845 Msa0172310:intron 25.0%
! GATCCAACTATTAAATTTAG+TGG + chr1_4:57303891-57303910 Msa0172310:CDS 25.0%
! AGACTAGCATAAGATATTAT+AGG - chr1_4:57303935-57303954 None:intergenic 25.0%
! AAACAACTATAAGAGCTAAA+AGG + chr1_4:57304059-57304078 Msa0172310:intron 25.0%
!!! ATTTTCAAGTTTGAAAAACC+AGG + chr1_4:57304691-57304710 Msa0172310:CDS 25.0%
! CATTAACAACTATATACAGT+AGG - chr1_4:57304805-57304824 None:intergenic 25.0%
! AGATGCTTAGAAAAATATAC+AGG - chr1_4:57304840-57304859 None:intergenic 25.0%
CATAAAGAAGTCGAATGAAA+TGG + chr1_4:57302878-57302897 Msa0172310:intron 30.0%
GACTTGTGCAATTTATAACA+TGG + chr1_4:57303123-57303142 Msa0172310:exon 30.0%
AAGTGTTTGTGCTACATAAA+TGG - chr1_4:57303252-57303271 None:intergenic 30.0%
ATCATCAATACTTGAAACTG+GGG - chr1_4:57303611-57303630 None:intergenic 30.0%
CATCATCAATACTTGAAACT+GGG - chr1_4:57303612-57303631 None:intergenic 30.0%
ACATCATCAATACTTGAAAC+TGG - chr1_4:57303613-57303632 None:intergenic 30.0%
! TTCAACATCATTTCCTTTTC+TGG + chr1_4:57303785-57303804 Msa0172310:intron 30.0%
TTTAGATTACATGCCAGAAA+AGG - chr1_4:57303801-57303820 None:intergenic 30.0%
TCTATGATGTATGATCATAC+AGG + chr1_4:57304134-57304153 Msa0172310:intron 30.0%
GATCTTTAGTAGTCTAATTG+AGG - chr1_4:57304213-57304232 None:intergenic 30.0%
TAGACTACTAAAGATCGAAA+AGG + chr1_4:57304217-57304236 Msa0172310:CDS 30.0%
ATTAACATGCTTAATGAGCA+AGG - chr1_4:57304391-57304410 None:intergenic 30.0%
GTTTATTATCTCTCAATCTC+AGG + chr1_4:57304441-57304460 Msa0172310:intron 30.0%
! ATTATGAGTCGAAAGTTTTG+AGG - chr1_4:57304568-57304587 None:intergenic 30.0%
!! ATTTTGTTTGACAGATCGTT+CGG + chr1_4:57304623-57304642 Msa0172310:intron 30.0%
! AAGAATCATAGGCATTTTCA+TGG - chr1_4:57304763-57304782 None:intergenic 30.0%
ATAGTTGTTAATGACGCAAT+TGG + chr1_4:57304812-57304831 Msa0172310:three_prime_UTR 30.0%
CTAGTTATGCATATGCTTAT+CGG - chr1_4:57304874-57304893 None:intergenic 30.0%
GTTTAAGCAATGTTTACTAC+AGG + chr1_4:57304917-57304936 Msa0172310:three_prime_UTR 30.0%
CATAAAGAAGTCGAATGAAA+TGG + chr1_4:57302878-57302897 Msa0172310:intron 30.0%
GACTTGTGCAATTTATAACA+TGG + chr1_4:57303123-57303142 Msa0172310:exon 30.0%
AAGTGTTTGTGCTACATAAA+TGG - chr1_4:57303252-57303271 None:intergenic 30.0%
ATCATCAATACTTGAAACTG+GGG - chr1_4:57303611-57303630 None:intergenic 30.0%
CATCATCAATACTTGAAACT+GGG - chr1_4:57303612-57303631 None:intergenic 30.0%
ACATCATCAATACTTGAAAC+TGG - chr1_4:57303613-57303632 None:intergenic 30.0%
! TTCAACATCATTTCCTTTTC+TGG + chr1_4:57303785-57303804 Msa0172310:intron 30.0%
TTTAGATTACATGCCAGAAA+AGG - chr1_4:57303801-57303820 None:intergenic 30.0%
TCTATGATGTATGATCATAC+AGG + chr1_4:57304134-57304153 Msa0172310:intron 30.0%
GATCTTTAGTAGTCTAATTG+AGG - chr1_4:57304213-57304232 None:intergenic 30.0%
TAGACTACTAAAGATCGAAA+AGG + chr1_4:57304217-57304236 Msa0172310:CDS 30.0%
ATTAACATGCTTAATGAGCA+AGG - chr1_4:57304391-57304410 None:intergenic 30.0%
GTTTATTATCTCTCAATCTC+AGG + chr1_4:57304441-57304460 Msa0172310:intron 30.0%
! ATTATGAGTCGAAAGTTTTG+AGG - chr1_4:57304568-57304587 None:intergenic 30.0%
!! ATTTTGTTTGACAGATCGTT+CGG + chr1_4:57304623-57304642 Msa0172310:intron 30.0%
! AAGAATCATAGGCATTTTCA+TGG - chr1_4:57304763-57304782 None:intergenic 30.0%
ATAGTTGTTAATGACGCAAT+TGG + chr1_4:57304812-57304831 Msa0172310:three_prime_UTR 30.0%
CTAGTTATGCATATGCTTAT+CGG - chr1_4:57304874-57304893 None:intergenic 30.0%
GTTTAAGCAATGTTTACTAC+AGG + chr1_4:57304917-57304936 Msa0172310:three_prime_UTR 30.0%
CTGAATCTCTTGTTAAGACT+AGG + chr1_4:57303038-57303057 Msa0172310:intron 35.0%
! CATAGATACCTTGTTTGTTG+GGG - chr1_4:57303229-57303248 None:intergenic 35.0%
! GCATAGATACCTTGTTTGTT+GGG - chr1_4:57303230-57303249 None:intergenic 35.0%
CAACATTGACGCTTAAACAT+TGG - chr1_4:57303345-57303364 None:intergenic 35.0%
! ACATAAGTTGACGATTAGTG+AGG - chr1_4:57303503-57303522 None:intergenic 35.0%
TGATGTATGATCATACAGGT+AGG + chr1_4:57304138-57304157 Msa0172310:intron 35.0%
GATGTATGATCATACAGGTA+GGG + chr1_4:57304139-57304158 Msa0172310:intron 35.0%
ATAATGCAGGATGTTGAATC+TGG + chr1_4:57304325-57304344 Msa0172310:intron 35.0%
TCGAAATCCATGTTAACTAG+TGG + chr1_4:57304593-57304612 Msa0172310:intron 35.0%
! TTCAAGTTTGAAAAACCAGG+TGG + chr1_4:57304694-57304713 Msa0172310:CDS 35.0%
CGATAAGCATATGCATAACT+AGG + chr1_4:57304872-57304891 Msa0172310:three_prime_UTR 35.0%
CTGAATCTCTTGTTAAGACT+AGG + chr1_4:57303038-57303057 Msa0172310:intron 35.0%
! CATAGATACCTTGTTTGTTG+GGG - chr1_4:57303229-57303248 None:intergenic 35.0%
! GCATAGATACCTTGTTTGTT+GGG - chr1_4:57303230-57303249 None:intergenic 35.0%
CAACATTGACGCTTAAACAT+TGG - chr1_4:57303345-57303364 None:intergenic 35.0%
! ACATAAGTTGACGATTAGTG+AGG - chr1_4:57303503-57303522 None:intergenic 35.0%
TGATGTATGATCATACAGGT+AGG + chr1_4:57304138-57304157 Msa0172310:intron 35.0%
GATGTATGATCATACAGGTA+GGG + chr1_4:57304139-57304158 Msa0172310:intron 35.0%
ATAATGCAGGATGTTGAATC+TGG + chr1_4:57304325-57304344 Msa0172310:intron 35.0%
TCGAAATCCATGTTAACTAG+TGG + chr1_4:57304593-57304612 Msa0172310:intron 35.0%
! TTCAAGTTTGAAAAACCAGG+TGG + chr1_4:57304694-57304713 Msa0172310:CDS 35.0%
CGATAAGCATATGCATAACT+AGG + chr1_4:57304872-57304891 Msa0172310:three_prime_UTR 35.0%
! GCAAAAACATGCTGCTTCAA+CGG + chr1_4:57302900-57302919 Msa0172310:five_prime_UTR 40.0%
GAAGTGTAAGGCTATTGTAG+GGG - chr1_4:57302931-57302950 None:intergenic 40.0%
! GGAAGTGTAAGGCTATTGTA+GGG - chr1_4:57302932-57302951 None:intergenic 40.0%
! TGGAAGTGTAAGGCTATTGT+AGG - chr1_4:57302933-57302952 None:intergenic 40.0%
AGACATTTATTACCTGGGAG+TGG - chr1_4:57302953-57302972 None:intergenic 40.0%
GCACAAGTCTTTCTACTACA+CGG - chr1_4:57303112-57303131 None:intergenic 40.0%
AGAAAGAAACAAAACCCCTC+AGG + chr1_4:57303150-57303169 Msa0172310:CDS 40.0%
! GGCATAGATACCTTGTTTGT+TGG - chr1_4:57303231-57303250 None:intergenic 40.0%
ATGTGTCAAGTGTACGACAT+TGG - chr1_4:57303312-57303331 None:intergenic 40.0%
GCTTAAACATTGGCCAATGT+CGG - chr1_4:57303335-57303354 None:intergenic 40.0%
GGTGTATGTGTATGTGTAAG+AGG + chr1_4:57303432-57303451 Msa0172310:intron 40.0%
TGTGTATGTGTAAGAGGTAG+TGG + chr1_4:57303438-57303457 Msa0172310:intron 40.0%
! CAAATTTTCTGCGTGCATCT+TGG + chr1_4:57304350-57304369 Msa0172310:CDS 40.0%
TGCGTGCATCTTGGAAATTA+AGG + chr1_4:57304359-57304378 Msa0172310:CDS 40.0%
CTTCCATCAATAGCAATCAG+AGG - chr1_4:57304491-57304510 None:intergenic 40.0%
GTTGCAACCACTAGTTAACA+TGG - chr1_4:57304603-57304622 None:intergenic 40.0%
! GCAAAAACATGCTGCTTCAA+CGG + chr1_4:57302900-57302919 Msa0172310:five_prime_UTR 40.0%
GAAGTGTAAGGCTATTGTAG+GGG - chr1_4:57302931-57302950 None:intergenic 40.0%
! GGAAGTGTAAGGCTATTGTA+GGG - chr1_4:57302932-57302951 None:intergenic 40.0%
! TGGAAGTGTAAGGCTATTGT+AGG - chr1_4:57302933-57302952 None:intergenic 40.0%
AGACATTTATTACCTGGGAG+TGG - chr1_4:57302953-57302972 None:intergenic 40.0%
GCACAAGTCTTTCTACTACA+CGG - chr1_4:57303112-57303131 None:intergenic 40.0%
AGAAAGAAACAAAACCCCTC+AGG + chr1_4:57303150-57303169 Msa0172310:CDS 40.0%
! GGCATAGATACCTTGTTTGT+TGG - chr1_4:57303231-57303250 None:intergenic 40.0%
ATGTGTCAAGTGTACGACAT+TGG - chr1_4:57303312-57303331 None:intergenic 40.0%
GCTTAAACATTGGCCAATGT+CGG - chr1_4:57303335-57303354 None:intergenic 40.0%
GGTGTATGTGTATGTGTAAG+AGG + chr1_4:57303432-57303451 Msa0172310:intron 40.0%
TGTGTATGTGTAAGAGGTAG+TGG + chr1_4:57303438-57303457 Msa0172310:intron 40.0%
! CAAATTTTCTGCGTGCATCT+TGG + chr1_4:57304350-57304369 Msa0172310:CDS 40.0%
TGCGTGCATCTTGGAAATTA+AGG + chr1_4:57304359-57304378 Msa0172310:CDS 40.0%
CTTCCATCAATAGCAATCAG+AGG - chr1_4:57304491-57304510 None:intergenic 40.0%
GTTGCAACCACTAGTTAACA+TGG - chr1_4:57304603-57304622 None:intergenic 40.0%
!! TGTTGTTTCCGCAACAGCAA+GGG - chr1_4:57303070-57303089 None:intergenic 45.0%
TGCAATCTTCAGAACCTGAG+GGG - chr1_4:57303167-57303186 None:intergenic 45.0%
CTGCAATCTTCAGAACCTGA+GGG - chr1_4:57303168-57303187 None:intergenic 45.0%
ACTGCAATCTTCAGAACCTG+AGG - chr1_4:57303169-57303188 None:intergenic 45.0%
!! GTTCTGAAGATTGCAGTGAG+CGG + chr1_4:57303172-57303191 Msa0172310:CDS 45.0%
! AGATACCTTGTTTGTTGGGG+AGG - chr1_4:57303226-57303245 None:intergenic 45.0%
CTTCAGAGTGAAGACGTCTT+TGG + chr1_4:57303269-57303288 Msa0172310:intron 45.0%
ACACTTGACACATCCGACAT+TGG + chr1_4:57303319-57303338 Msa0172310:intron 45.0%
ATTACTACCAGCGTCATGTC+TGG + chr1_4:57303406-57303425 Msa0172310:intron 45.0%
! GAGGTAGTGGTTCATGTTGT+TGG + chr1_4:57303451-57303470 Msa0172310:intron 45.0%
ATGCATATTTCCCTGGCAGT+TGG - chr1_4:57303479-57303498 None:intergenic 45.0%
GTGAGGAATGCATATTTCCC+TGG - chr1_4:57303486-57303505 None:intergenic 45.0%
!!! GACAGCGCTTATTTTGTCAC+AGG + chr1_4:57303658-57303677 Msa0172310:CDS 45.0%
ATTGAGGCACAGTCGAAGAA+TGG - chr1_4:57304197-57304216 None:intergenic 45.0%
GGACCAACTTAAAACTTCCG+TGG + chr1_4:57304462-57304481 Msa0172310:intron 45.0%
!!! CCTCCACGGAAGTTTTAAGT+TGG - chr1_4:57304468-57304487 None:intergenic 45.0%
CCAACTTAAAACTTCCGTGG+AGG + chr1_4:57304465-57304484 Msa0172310:CDS 45.0%
! AGGCCTCTGATTGCTATTGA+TGG + chr1_4:57304485-57304504 Msa0172310:CDS 45.0%
!!! TCGAAAGTTTTGAGGCAAGG+AGG - chr1_4:57304560-57304579 None:intergenic 45.0%
!!! GAGTCGAAAGTTTTGAGGCA+AGG - chr1_4:57304563-57304582 None:intergenic 45.0%
TCGTTCGGCATATTGAGAGT+TGG + chr1_4:57304638-57304657 Msa0172310:CDS 45.0%
AACCAGGTGGTTGAATGTCA+TGG + chr1_4:57304707-57304726 Msa0172310:exon 45.0%
!! TGTTGTTTCCGCAACAGCAA+GGG - chr1_4:57303070-57303089 None:intergenic 45.0%
TGCAATCTTCAGAACCTGAG+GGG - chr1_4:57303167-57303186 None:intergenic 45.0%
CTGCAATCTTCAGAACCTGA+GGG - chr1_4:57303168-57303187 None:intergenic 45.0%
ACTGCAATCTTCAGAACCTG+AGG - chr1_4:57303169-57303188 None:intergenic 45.0%
!! GTTCTGAAGATTGCAGTGAG+CGG + chr1_4:57303172-57303191 Msa0172310:CDS 45.0%
! AGATACCTTGTTTGTTGGGG+AGG - chr1_4:57303226-57303245 None:intergenic 45.0%
CTTCAGAGTGAAGACGTCTT+TGG + chr1_4:57303269-57303288 Msa0172310:intron 45.0%
ACACTTGACACATCCGACAT+TGG + chr1_4:57303319-57303338 Msa0172310:intron 45.0%
ATTACTACCAGCGTCATGTC+TGG + chr1_4:57303406-57303425 Msa0172310:intron 45.0%
! GAGGTAGTGGTTCATGTTGT+TGG + chr1_4:57303451-57303470 Msa0172310:intron 45.0%
ATGCATATTTCCCTGGCAGT+TGG - chr1_4:57303479-57303498 None:intergenic 45.0%
GTGAGGAATGCATATTTCCC+TGG - chr1_4:57303486-57303505 None:intergenic 45.0%
!!! GACAGCGCTTATTTTGTCAC+AGG + chr1_4:57303658-57303677 Msa0172310:CDS 45.0%
ATTGAGGCACAGTCGAAGAA+TGG - chr1_4:57304197-57304216 None:intergenic 45.0%
GGACCAACTTAAAACTTCCG+TGG + chr1_4:57304462-57304481 Msa0172310:intron 45.0%
!!! CCTCCACGGAAGTTTTAAGT+TGG - chr1_4:57304468-57304487 None:intergenic 45.0%
CCAACTTAAAACTTCCGTGG+AGG + chr1_4:57304465-57304484 Msa0172310:CDS 45.0%
! AGGCCTCTGATTGCTATTGA+TGG + chr1_4:57304485-57304504 Msa0172310:CDS 45.0%
!!! TCGAAAGTTTTGAGGCAAGG+AGG - chr1_4:57304560-57304579 None:intergenic 45.0%
!!! GAGTCGAAAGTTTTGAGGCA+AGG - chr1_4:57304563-57304582 None:intergenic 45.0%
TCGTTCGGCATATTGAGAGT+TGG + chr1_4:57304638-57304657 Msa0172310:CDS 45.0%
AACCAGGTGGTTGAATGTCA+TGG + chr1_4:57304707-57304726 Msa0172310:exon 45.0%
! TACCTGGGAGTGGAAGTGTA+AGG - chr1_4:57302943-57302962 None:intergenic 50.0%
!! GTGTTGTTTCCGCAACAGCA+AGG - chr1_4:57303071-57303090 None:intergenic 50.0%
TCTCTCCTCCCCAACAAACA+AGG + chr1_4:57303218-57303237 Msa0172310:CDS 50.0%
TGTTGTTGGAACCAACTGCC+AGG + chr1_4:57303465-57303484 Msa0172310:intron 50.0%
GTTGTTGGAACCAACTGCCA+GGG + chr1_4:57303466-57303485 Msa0172310:intron 50.0%
ATAGCAATCAGAGGCCTCCA+CGG - chr1_4:57304482-57304501 None:intergenic 50.0%
CAGGTGGTTGAATGTCATGG+CGG + chr1_4:57304710-57304729 Msa0172310:exon 50.0%
AGGTGGTTGAATGTCATGGC+GGG + chr1_4:57304711-57304730 Msa0172310:exon 50.0%
!! TTGAATGTCATGGCGGGTGA+GGG + chr1_4:57304717-57304736 Msa0172310:exon 50.0%
! TACCTGGGAGTGGAAGTGTA+AGG - chr1_4:57302943-57302962 None:intergenic 50.0%
!! GTGTTGTTTCCGCAACAGCA+AGG - chr1_4:57303071-57303090 None:intergenic 50.0%
TCTCTCCTCCCCAACAAACA+AGG + chr1_4:57303218-57303237 Msa0172310:CDS 50.0%
TGTTGTTGGAACCAACTGCC+AGG + chr1_4:57303465-57303484 Msa0172310:intron 50.0%
GTTGTTGGAACCAACTGCCA+GGG + chr1_4:57303466-57303485 Msa0172310:intron 50.0%
ATAGCAATCAGAGGCCTCCA+CGG - chr1_4:57304482-57304501 None:intergenic 50.0%
CAGGTGGTTGAATGTCATGG+CGG + chr1_4:57304710-57304729 Msa0172310:exon 50.0%
AGGTGGTTGAATGTCATGGC+GGG + chr1_4:57304711-57304730 Msa0172310:exon 50.0%
!! TTGAATGTCATGGCGGGTGA+GGG + chr1_4:57304717-57304736 Msa0172310:exon 50.0%
AGCCTTACACTTCCACTCCC+AGG + chr1_4:57302938-57302957 Msa0172310:five_prime_UTR 55.0%
TGTTTCCGCAACAGCAAGGG+TGG - chr1_4:57303067-57303086 None:intergenic 55.0%
GATTGCAGTGAGCGGAGTGA+CGG + chr1_4:57303180-57303199 Msa0172310:CDS 55.0%
TACCAGCGTCATGTCTGGTC+TGG + chr1_4:57303411-57303430 Msa0172310:intron 55.0%
CGCCATGACATTCAACCACC+TGG - chr1_4:57304712-57304731 None:intergenic 55.0%
!! GTTGAATGTCATGGCGGGTG+AGG + chr1_4:57304716-57304735 Msa0172310:exon 55.0%
AGCCTTACACTTCCACTCCC+AGG + chr1_4:57302938-57302957 Msa0172310:five_prime_UTR 55.0%
TGTTTCCGCAACAGCAAGGG+TGG - chr1_4:57303067-57303086 None:intergenic 55.0%
GATTGCAGTGAGCGGAGTGA+CGG + chr1_4:57303180-57303199 Msa0172310:CDS 55.0%
TACCAGCGTCATGTCTGGTC+TGG + chr1_4:57303411-57303430 Msa0172310:intron 55.0%
CGCCATGACATTCAACCACC+TGG - chr1_4:57304712-57304731 None:intergenic 55.0%
!! GTTGAATGTCATGGCGGGTG+AGG + chr1_4:57304716-57304735 Msa0172310:exon 55.0%
GGGGAGGAGAGAAAAGCCTC+AGG - chr1_4:57303210-57303229 None:intergenic 60.0%
CACCAGACCAGACATGACGC+TGG - chr1_4:57303416-57303435 None:intergenic 60.0%
GGGGAGGAGAGAAAAGCCTC+AGG - chr1_4:57303210-57303229 None:intergenic 60.0%
CACCAGACCAGACATGACGC+TGG - chr1_4:57303416-57303435 None:intergenic 60.0%
!! GGACGCCACCCTTGCTGTTG+CGG + chr1_4:57303059-57303078 Msa0172310:intron 65.0%
!! GGACGCCACCCTTGCTGTTG+CGG + chr1_4:57303059-57303078 Msa0172310:intron 65.0%
! GCGGAGTGACGGAGCTCCTG+AGG + chr1_4:57303191-57303210 Msa0172310:CDS 70.0%
! GCGGAGTGACGGAGCTCCTG+AGG + chr1_4:57303191-57303210 Msa0172310:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 57302831 57304965 57302831 ID=Msa0172310;Name=Msa0172310
chr1_4 mRNA 57302831 57304965 57302831 ID=Msa0172310-mRNA-1;Parent=Msa0172310;Name=Msa0172310-mRNA-1;_AED=0.15;_eAED=0.15;_QI=188|1|1|1|0.75|0.66|9|245|188
chr1_4 exon 57302831 57302860 57302831 ID=Msa0172310-mRNA-1:exon:17522;Parent=Msa0172310-mRNA-1
chr1_4 exon 57302884 57302959 57302884 ID=Msa0172310-mRNA-1:exon:17523;Parent=Msa0172310-mRNA-1
chr1_4 exon 57303060 57303239 57303060 ID=Msa0172310-mRNA-1:exon:17524;Parent=Msa0172310-mRNA-1
chr1_4 exon 57303570 57303679 57303570 ID=Msa0172310-mRNA-1:exon:17525;Parent=Msa0172310-mRNA-1
chr1_4 exon 57303847 57303912 57303847 ID=Msa0172310-mRNA-1:exon:17526;Parent=Msa0172310-mRNA-1
chr1_4 exon 57304156 57304238 57304156 ID=Msa0172310-mRNA-1:exon:17527;Parent=Msa0172310-mRNA-1
chr1_4 exon 57304334 57304380 57304334 ID=Msa0172310-mRNA-1:exon:17528;Parent=Msa0172310-mRNA-1
chr1_4 exon 57304463 57304541 57304463 ID=Msa0172310-mRNA-1:exon:17529;Parent=Msa0172310-mRNA-1
chr1_4 exon 57304637 57304965 57304637 ID=Msa0172310-mRNA-1:exon:17530;Parent=Msa0172310-mRNA-1
chr1_4 five_prime_UTR 57302831 57302860 57302831 ID=Msa0172310-mRNA-1:five_prime_utr;Parent=Msa0172310-mRNA-1
chr1_4 five_prime_UTR 57302884 57302959 57302884 ID=Msa0172310-mRNA-1:five_prime_utr;Parent=Msa0172310-mRNA-1
chr1_4 five_prime_UTR 57303060 57303141 57303060 ID=Msa0172310-mRNA-1:five_prime_utr;Parent=Msa0172310-mRNA-1
chr1_4 CDS 57303142 57303239 57303142 ID=Msa0172310-mRNA-1:cds;Parent=Msa0172310-mRNA-1
chr1_4 CDS 57303570 57303679 57303570 ID=Msa0172310-mRNA-1:cds;Parent=Msa0172310-mRNA-1
chr1_4 CDS 57303847 57303912 57303847 ID=Msa0172310-mRNA-1:cds;Parent=Msa0172310-mRNA-1
chr1_4 CDS 57304156 57304238 57304156 ID=Msa0172310-mRNA-1:cds;Parent=Msa0172310-mRNA-1
chr1_4 CDS 57304334 57304380 57304334 ID=Msa0172310-mRNA-1:cds;Parent=Msa0172310-mRNA-1
chr1_4 CDS 57304463 57304541 57304463 ID=Msa0172310-mRNA-1:cds;Parent=Msa0172310-mRNA-1
chr1_4 CDS 57304637 57304720 57304637 ID=Msa0172310-mRNA-1:cds;Parent=Msa0172310-mRNA-1
chr1_4 three_prime_UTR 57304721 57304965 57304721 ID=Msa0172310-mRNA-1:three_prime_utr;Parent=Msa0172310-mRNA-1
Gene Sequence

>Msa0172310

ATGGTAAGAGAAAGAAACAAAACCCCTCAGGTTCTGAAGATTGCAGTGAGCGGAGTGACGGAGCTCCTGAGGCTTTTCTCTCCTCCCCAACAAACAAGTGTTTTAAGCAGTAACGTTGAGAAACAGAATAATGACTCCCCAGTTTCAAGTATTGATGATGTTCTAATCATCATAAAGGATGATTATGACAGCGCTTATTTTGTCACAGGGAACTTCACTTCTTCAATTTACGCAGAAAATTGTATCTTTGAAGATCCAACTATTAAATTTAGTGGTAGGGACTTATATGCGCGCAACTTGAAATTACTCGTTCCATTCTTCGACTGTGCCTCAATTAGACTACTAAAGATCGAAAAGGATGTTGAATCTGGCACAAATTTTCTGCGTGCATCTTGGAAATTAAGGACCAACTTAAAACTTCCGTGGAGGCCTCTGATTGCTATTGATGGAAGCACTTCTTATGAATTGAATGAAGATTTCAAAATCGTTCGGCATATTGAGAGTTGGAATGTTTCTGCACTTGAAGCAGTTTTGCAGATTTTCAAGTTTGAAAAACCAGGTGGTTGA

Protein sequence

>Msa0172310

MVRERNKTPQVLKIAVSGVTELLRLFSPPQQTSVLSSNVEKQNNDSPVSSIDDVLIIIKDDYDSAYFVTGNFTSSIYAENCIFEDPTIKFSGRDLYARNLKLLVPFFDCASIRLLKIEKDVESGTNFLRASWKLRTNLKLPWRPLIAIDGSTSYELNEDFKIVRHIESWNVSALEAVLQIFKFEKPGG*