AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0528830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0528830 MtrunA17_Chr4g0042701 97.755 490 11 0 1 490 1 490 0.0 988
Msa0528830 MtrunA17_Chr3g0120751 26.797 459 291 20 37 473 43 478 2.65e-25 108
Msa0528830 MtrunA17_Chr7g0246961 29.412 323 150 13 55 311 8 318 3.77e-15 77.8
Msa0528830 MtrunA17_Chr1g0188461 30.052 193 121 6 60 244 11 197 5.32e-13 71.2
Msa0528830 MtrunA17_Chr6g0459101 24.171 422 261 17 61 446 73 471 2.74e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0528830 AT1G14030.1 64.069 462 157 3 23 483 24 477 0.0 609
Msa0528830 AT3G07670.1 29.618 314 197 13 44 346 63 363 1.16e-22 101
Msa0528830 AT4G20130.1 25.814 430 234 17 80 470 99 482 6.37e-18 86.7
Msa0528830 AT3G07670.2 31.441 229 137 10 126 346 9 225 9.95e-18 85.1
Msa0528830 AT3G55080.1 25.070 355 228 12 4 349 2 327 5.70e-17 83.6
Msa0528830 AT4G20130.3 25.779 353 195 12 139 470 57 363 5.72e-15 76.6
Msa0528830 AT4G20130.2 25.779 353 195 12 139 470 57 363 5.72e-15 76.6
Msa0528830 AT5G14260.2 25.575 391 239 15 85 445 115 483 2.34e-12 69.7
Msa0528830 AT5G14260.3 25.575 391 239 15 85 445 115 483 2.34e-12 69.7
Msa0528830 AT5G14260.1 25.575 391 239 15 85 445 115 483 2.34e-12 69.7
Msa0528830 AT3G55080.3 24.615 260 172 9 97 349 1 243 3.76e-12 68.2
Msa0528830 AT3G55080.5 24.615 260 172 9 97 349 1 243 3.76e-12 68.2
Msa0528830 AT3G55080.2 24.664 223 151 7 133 349 6 217 1.04e-11 66.6
Msa0528830 AT3G55080.4 24.664 223 146 7 133 349 6 212 2.25e-11 65.9

Find 169 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATCATCGTCCCCTTTAA+AGG 0.157833 4_1:-1804579 Msa0528840:three_prime_UTR
TTATACAACTATACTGAATT+TGG 0.182459 4_1:+1804800 Msa0528830:three_prime_UTR
TGACACTGGATGACTTCTTC+TGG 0.230073 4_1:+1802603 Msa0528830:CDS
GGGTACCGATGCTTTCTTAT+TGG 0.244903 4_1:+1803831 Msa0528830:CDS
TGCATTCAATCAACCTTTAA+AGG 0.269412 4_1:+1804566 Msa0528830:three_prime_UTR
AGATTGCTCTTGCATACTTA+TGG 0.269547 4_1:+1804978 Msa0528830:three_prime_UTR
ACTACTAACCTTGAAGTTCT+TGG 0.282877 4_1:-1802346 None:intergenic
GATGACTTCTTCTGGGCATT+TGG 0.290567 4_1:+1802611 Msa0528830:CDS
CTCCAGCAGTTCAAACCTTC+TGG 0.294167 4_1:+1801898 Msa0528830:CDS
CAAAATACTTCTAATCTTGC+AGG 0.301113 4_1:+1804435 Msa0528830:exon
ACCAGCAAGGGCGGATTTGC+AGG 0.304466 4_1:-1803944 Msa0528840:three_prime_UTR
TTGCTTGATATGCATCAAAA+TGG 0.313563 4_1:-1805242 Msa0528840:CDS
CATCTTTGCAAGCCTCTATA+TGG 0.317158 4_1:+1804855 Msa0528830:three_prime_UTR
GGATTTATCCACAACCTCTT+AGG 0.337946 4_1:-1802044 None:intergenic
GCAGAGTTGGCTCTGGACTA+TGG 0.343115 4_1:+1803616 Msa0528830:CDS
ATGCAAGAGCAATCTGAAAA+TGG 0.345318 4_1:-1804970 Msa0528840:three_prime_UTR
TTCCAGAAGGTTTGAACTGC+TGG 0.346946 4_1:-1801900 None:intergenic
GCCTGCAAATCCGCCCTTGC+TGG 0.360260 4_1:+1803943 Msa0528830:CDS
TAGAAATAATCCTCCTCCTT+TGG 0.360561 4_1:+1805125 Msa0528830:three_prime_UTR
TAGCGCTCATGCAGGTATTC+CGG 0.363730 4_1:-1805308 Msa0528840:intron
AACAACAGTATGTCATTAAC+TGG 0.364991 4_1:-1804469 Msa0528840:three_prime_UTR
CACTGTTCAGAGACTCCATC+TGG 0.373117 4_1:+1803857 Msa0528830:CDS
GCATTCAATCAACCTTTAAA+GGG 0.374835 4_1:+1804567 Msa0528830:three_prime_UTR
TGCTCTTGCATACTTATGGT+TGG 0.387006 4_1:+1804982 Msa0528830:three_prime_UTR
GATCTTCGAGCAGAAAGAAT+TGG 0.388839 4_1:+1804325 Msa0528830:CDS
GCTCTTGCATACTTATGGTT+GGG 0.392646 4_1:+1804983 Msa0528830:three_prime_UTR
AAACTGATTCTACAATATAT+TGG 0.395083 4_1:+1802204 Msa0528830:CDS
TCACATGCGTTCACCGTAGA+AGG 0.396385 4_1:-1804543 Msa0528840:three_prime_UTR
TTCTGTCAAGGCAGGAGAAC+AGG 0.398267 4_1:+1803224 Msa0528830:CDS
GCAACCAATCCTAAACCTTC+TGG 0.402948 4_1:-1801981 None:intergenic
CCATCTTATTGGACCGGAAA+AGG 0.405140 4_1:-1805274 Msa0528840:CDS
ACAAGCTGCAGGCATGTAAT+GGG 0.405918 4_1:-1804630 Msa0528840:three_prime_UTR
CTCAAGGATCTTGGACTTTG+CGG 0.406199 4_1:+1804383 Msa0528830:CDS
GAAAGGAGGCTCAAGGATCT+TGG 0.407166 4_1:+1804374 Msa0528830:CDS
GAAGAATGAATGTCTGAAAC+TGG 0.408078 4_1:+1802535 Msa0528830:CDS
TATGCATATCGATCTGCATT+TGG 0.408825 4_1:-1803649 Msa0528840:three_prime_UTR
GCTGTTGCTGCTTCAGAGAT+AGG 0.410978 4_1:+1802071 Msa0528830:CDS
TTCTCCTGCCTTGACAGAAA+GGG 0.411526 4_1:-1803220 Msa0528840:three_prime_UTR
TACAAGCTGCAGGCATGTAA+TGG 0.411895 4_1:-1804631 Msa0528840:three_prime_UTR
GCTACTGATTTGACAGAGAA+AGG 0.414228 4_1:-1801849 None:intergenic
CTGAAAATGGCTCCTTCCCT+CGG 0.419876 4_1:-1804957 Msa0528840:three_prime_UTR
GACACTGGATGACTTCTTCT+GGG 0.421868 4_1:+1802604 Msa0528830:CDS
ACTAGCTTTCACTGGTGTCT+TGG 0.428693 4_1:-1801952 None:intergenic
AGTGCTACTAATCTCAGATA+TGG 0.428804 4_1:-1803805 Msa0528840:three_prime_UTR
TCTGAAGCAGCAACAGCATC+AGG 0.439199 4_1:-1802065 None:intergenic
TTTCTTGATAATATTCCAAC+TGG 0.444121 4_1:-1804355 Msa0528840:three_prime_UTR
TGTGATTCCACTTGCAGACT+TGG 0.445510 4_1:+1802682 Msa0528830:CDS
TGTTGTTTCTTATTAGAGAA+AGG 0.454728 4_1:+1802132 Msa0528830:CDS
GGTCAAGAGAGGATTCTGTT+TGG 0.455743 4_1:+1802153 Msa0528830:CDS
AAAAGTCCATCTTATTGGAC+CGG 0.458534 4_1:-1805280 Msa0528840:CDS
ATAGTTTATTACCTGTTCAA+TGG 0.458942 4_1:-1803977 Msa0528840:intron
TGCAGGTGCCTAAGAGGTTG+TGG 0.460079 4_1:+1802036 Msa0528830:CDS
CATTTGGAATTCTCAGATCA+AGG 0.465096 4_1:+1802627 Msa0528830:CDS
GTTCTCCTGCCTTGACAGAA+AGG 0.468467 4_1:-1803221 Msa0528840:three_prime_UTR
CTTACTTGAGTAGAGTTATG+AGG 0.468781 4_1:+1805047 Msa0528830:three_prime_UTR
CAGATGAAGAGTTGGTACTT+TGG 0.474930 4_1:-1801820 None:intergenic
AGATATGGAAGCATCCCTTC+TGG 0.477120 4_1:-1803790 Msa0528840:three_prime_UTR
CTCCTCATTATCACGGCTCA+TGG 0.477204 4_1:-1803896 Msa0528840:three_prime_UTR
AAGCAATGCAGAGTTGGCTC+TGG 0.478444 4_1:+1803609 Msa0528830:CDS
CTCCATCTGGGGTCATCTTG+AGG 0.481584 4_1:+1803870 Msa0528830:CDS
GAAATATATGTTCCATATAG+AGG 0.482623 4_1:-1804867 Msa0528840:three_prime_UTR
AAGAGGCAAATCTAGATTCA+AGG 0.484970 4_1:+1804243 Msa0528830:CDS
AAGAAGTCATCCAGTGTCAC+AGG 0.486528 4_1:-1802599 None:intergenic
GAAGAGCTCCAAGAACTTCA+AGG 0.489004 4_1:+1802338 Msa0528830:CDS
GGTACCACACTAGCTTTCAC+TGG 0.496675 4_1:-1801960 None:intergenic
TCTGTTTGGAAGCATTACTT+TGG 0.496732 4_1:+1802167 Msa0528830:CDS
ACAACTATACTGAATTTGGT+GGG 0.497845 4_1:+1804804 Msa0528830:three_prime_UTR
GGGATTACCTATTTGCCCTA+AGG 0.498091 4_1:+1803193 Msa0528830:CDS
AAACAAAAGCAATGCAGAGT+TGG 0.498255 4_1:+1803603 Msa0528830:CDS
TTATCACACAACCATTGAAC+AGG 0.500689 4_1:+1803966 Msa0528830:CDS
CAGTTCAAACCTTCTGGAAG+TGG 0.501931 4_1:+1801904 Msa0528830:CDS
ACAGGTTCACGAAAAGAGAA+TGG 0.506682 4_1:-1805183 Msa0528840:CDS
CATGCCTGCAGCTTGTAAAG+TGG 0.508006 4_1:+1804637 Msa0528830:three_prime_UTR
AGTGTGGTACCAGAAGGTTT+AGG 0.510846 4_1:+1801972 Msa0528830:CDS
TATGCATACACCTTGACACT+GGG 0.512341 4_1:+1803664 Msa0528830:CDS
TTACTTTGGTATTCTGCCAC+AGG 0.513694 4_1:+1802181 Msa0528830:CDS
TACAACTATACTGAATTTGG+TGG 0.513828 4_1:+1804803 Msa0528830:three_prime_UTR
TCATCCAGTGTCACAGGAGA+AGG 0.518798 4_1:-1802593 None:intergenic
GGTTTCTTCAGATGAAGAGT+TGG 0.524401 4_1:-1801828 None:intergenic
CTGTTGCTGCTTCAGAGATA+GGG 0.524576 4_1:+1802072 Msa0528830:CDS
TGGGTTGTAATAATTGTGGC+CGG 0.524912 4_1:-1804611 Msa0528840:three_prime_UTR
GCATCTACAAACTCATTCCA+TGG 0.525256 4_1:+1805212 Msa0528830:three_prime_UTR
GGAAGCATCCCTTCTGGAAG+AGG 0.525978 4_1:-1803784 Msa0528840:three_prime_UTR
GCCCATGAGCCGTGATAATG+AGG 0.527832 4_1:+1803894 Msa0528830:CDS
TGAAAATGGCTCCTTCCCTC+GGG 0.528010 4_1:-1804956 Msa0528840:three_prime_UTR
ATCTGAGATTAGTAGCACTA+GGG 0.531413 4_1:+1803809 Msa0528830:CDS
TCTCCTGCCTTGACAGAAAG+GGG 0.533728 4_1:-1803219 Msa0528840:three_prime_UTR
GTTTGTAGATGCTGTGCGAC+AGG 0.534296 4_1:-1805201 Msa0528840:CDS
CTTGGACTTTGCGGTGAAAG+TGG 0.534968 4_1:+1804392 Msa0528830:CDS
AGTTGGAATATTATCAAGAA+AGG 0.536592 4_1:+1804357 Msa0528830:CDS
ATCGCAAATGTAGCCTTCTA+CGG 0.536666 4_1:+1804530 Msa0528830:three_prime_UTR
AGAATTGGAACTAGACCAGT+TGG 0.537321 4_1:+1804340 Msa0528830:CDS
GTCAAATCAGTAGCTTCACT+TGG 0.539419 4_1:+1801858 Msa0528830:CDS
TCCTCATTATCACGGCTCAT+GGG 0.543503 4_1:-1803895 Msa0528840:three_prime_UTR
AACTATACTGAATTTGGTGG+GGG 0.544382 4_1:+1804806 Msa0528830:three_prime_UTR
TATGAAGTCAAAGGACCAGC+TGG 0.544591 4_1:+1803159 Msa0528830:CDS
TTCTTGTAGCCACTTCCAGA+AGG 0.547912 4_1:-1801913 None:intergenic
CTACAAACTCATTCCATGGA+AGG 0.551044 4_1:+1805216 Msa0528830:three_prime_UTR
GCAGGATCGCAAGCTGAAAG+AGG 0.551716 4_1:+1804226 Msa0528830:intron
CACCTCAAGATGACCCCAGA+TGG 0.552036 4_1:-1803872 Msa0528840:three_prime_UTR
TCCCAAGAGAAAAGACCAGC+TGG 0.553440 4_1:-1803174 Msa0528840:three_prime_UTR
GGTACCAGAAGGTTTAGGAT+TGG 0.557599 4_1:+1801977 Msa0528830:CDS
ACTGTTCAGAGACTCCATCT+GGG 0.560536 4_1:+1803858 Msa0528830:CDS
CAGGTTCACGAAAAGAGAAT+GGG 0.560835 4_1:-1805182 Msa0528840:CDS
ATCAAAATGGAACCCTTCCA+TGG 0.561331 4_1:-1805229 Msa0528840:CDS
TTGCTGCTTCAGAGATAGGG+AGG 0.563350 4_1:+1802075 Msa0528830:CDS
TGGAAGTGGCTACAAGAAGA+AGG 0.567416 4_1:+1801918 Msa0528830:CDS
TATTAGAGAAAGGTCAAGAG+AGG 0.570783 4_1:+1802142 Msa0528830:CDS
CCCTCATGAGTGCCTTTGTG+AGG 0.571802 4_1:-1805096 Msa0528840:CDS
CAACTATACTGAATTTGGTG+GGG 0.573463 4_1:+1804805 Msa0528830:three_prime_UTR
ACAATGATTCGACGATAAGT+CGG 0.577569 4_1:+1805155 Msa0528830:three_prime_UTR
TATAACCGCCCTCTTCCAGA+AGG 0.578293 4_1:+1803775 Msa0528830:CDS
CTCTAAGAACTTATGCCCGA+GGG 0.578429 4_1:+1804941 Msa0528830:three_prime_UTR
ATGATCATCTGTAGTCACTC+TGG 0.581191 4_1:-1803133 Msa0528840:three_prime_UTR
GATCATGCTTATGAAGTCAA+AGG 0.581508 4_1:+1803150 Msa0528830:CDS
AGATCTCATCAATTTGCCGC+AGG 0.582417 4_1:-1804307 Msa0528840:three_prime_UTR
ATTTGGAATTCTCAGATCAA+GGG 0.583610 4_1:+1802628 Msa0528830:CDS
TATCTGAGATTAGTAGCACT+AGG 0.584493 4_1:+1803808 Msa0528830:CDS
GTTCATTCTCTATGTAATCA+CGG 0.584697 4_1:-1804732 Msa0528840:three_prime_UTR
ATATGCATACACCTTGACAC+TGG 0.586569 4_1:+1803663 Msa0528830:CDS
TGTAGACAAACCAAAGGAGG+AGG 0.587728 4_1:-1805135 Msa0528840:CDS
CTCGGATATCCCCAGTGTCA+AGG 0.587901 4_1:-1803674 Msa0528840:three_prime_UTR
TATCTTATTAGCGCTCATGC+AGG 0.590245 4_1:-1805316 Msa0528840:intron
TACAAACTCATTCCATGGAA+GGG 0.592326 4_1:+1805217 Msa0528830:three_prime_UTR
GTTATTCCAGTGCAGGTCAG+AGG 0.594794 4_1:+1802316 Msa0528830:intron
ACAAAGGCACTCATGAGGGT+TGG 0.596296 4_1:+1805100 Msa0528830:three_prime_UTR
CCCTCACAAAGGCACTCATG+AGG 0.597403 4_1:+1805095 Msa0528830:three_prime_UTR
TAGCAGTCGGAATAAGAGAA+GGG 0.598131 4_1:+1804273 Msa0528830:CDS
AAGAACTTATGCCCGAGGGA+AGG 0.599553 4_1:+1804945 Msa0528830:three_prime_UTR
GTAGACGTTGCTGAGACCAA+TGG 0.600772 4_1:+1803721 Msa0528830:CDS
TCAAGGCTTGCAATAGCAGT+CGG 0.600784 4_1:+1804260 Msa0528830:CDS
CACACTTTGTTCCCTCACAA+AGG 0.600880 4_1:+1805084 Msa0528830:three_prime_UTR
CCTCACAAAGGCACTCATGA+GGG 0.602588 4_1:+1805096 Msa0528830:three_prime_UTR
TGGAATATTATCAAGAAAGG+AGG 0.602703 4_1:+1804360 Msa0528830:CDS
CTCCTGCCTTGACAGAAAGG+GGG 0.606795 4_1:-1803218 Msa0528840:three_prime_UTR
GTTCTTACCAAGTCTGCAAG+TGG 0.608009 4_1:-1802689 None:intergenic
ATAGCAGTCGGAATAAGAGA+AGG 0.608578 4_1:+1804272 Msa0528830:CDS
CCTCATGAGTGCCTTTGTGA+GGG 0.609759 4_1:-1805095 Msa0528840:CDS
TTATCAAGAAAGGAGGCTCA+AGG 0.609776 4_1:+1804367 Msa0528830:CDS
AAAGCTAGTGTGGTACCAGA+AGG 0.610016 4_1:+1801966 Msa0528830:CDS
TCTCTAAGAACTTATGCCCG+AGG 0.611187 4_1:+1804940 Msa0528830:three_prime_UTR
TGCTGCTTCAGAGATAGGGA+GGG 0.612119 4_1:+1802076 Msa0528830:CDS
GGGTTGTAATAATTGTGGCC+GGG 0.612240 4_1:-1804610 Msa0528840:three_prime_UTR
ACAAAGTGTGATGATTTGCT+AGG 0.614058 4_1:-1805071 Msa0528840:CDS
CATTGTAGACAAACCAAAGG+AGG 0.615228 4_1:-1805138 Msa0528840:CDS
ACTGTTGTTTGTATCTCTTG+AGG 0.620279 4_1:+1804483 Msa0528830:three_prime_UTR
GGTGAAAGTGGTGATGTCCT+TGG 0.620946 4_1:+1804404 Msa0528830:CDS
CATTCAATCAACCTTTAAAG+GGG 0.622188 4_1:+1804568 Msa0528830:three_prime_UTR
GGTTGTGTGATAACCAGCAA+GGG 0.628035 4_1:-1803956 Msa0528840:three_prime_UTR
TGGTTGTGTGATAACCAGCA+AGG 0.629031 4_1:-1803957 Msa0528840:three_prime_UTR
AGCAGTCGGAATAAGAGAAG+GGG 0.636940 4_1:+1804274 Msa0528830:CDS
AATCATTGTAGACAAACCAA+AGG 0.637419 4_1:-1805141 Msa0528840:CDS
GAAGCATCCCTTCTGGAAGA+GGG 0.639736 4_1:-1803783 Msa0528840:three_prime_UTR
ATACTAGCTCCTCATTATCA+CGG 0.640006 4_1:-1803903 Msa0528840:three_prime_UTR
CTGTAGTCACTCTGGCACTG+TGG 0.648083 4_1:-1803125 Msa0528840:three_prime_UTR
ATTGTAGAATCAGTTTCCTG+TGG 0.648786 4_1:-1802197 None:intergenic
GTAATGGGTTGTAATAATTG+TGG 0.651529 4_1:-1804615 Msa0528840:three_prime_UTR
ATAACCGCCCTCTTCCAGAA+GGG 0.651691 4_1:+1803776 Msa0528830:CDS
TGATTCCAATAAGAAAGCAT+CGG 0.654051 4_1:-1803836 Msa0528840:three_prime_UTR
GACACCAGTGAAAGCTAGTG+TGG 0.671601 4_1:+1801956 Msa0528830:CDS
TCTGAGATTAGTAGCACTAG+GGG 0.673869 4_1:+1803810 Msa0528830:CDS
CTGTTCAGAGACTCCATCTG+GGG 0.675062 4_1:+1803859 Msa0528830:CDS
TGTGTGATAACCAGCAAGGG+CGG 0.678647 4_1:-1803953 Msa0528840:three_prime_UTR
ATGCATACACCTTGACACTG+GGG 0.698561 4_1:+1803665 Msa0528830:CDS
GCATCCCTTCTGGAAGAGGG+CGG 0.703925 4_1:-1803780 Msa0528840:three_prime_UTR
AACAACATAACAGACAACCA+TGG 0.720499 4_1:-1802116 None:intergenic
CTGAGATTAGTAGCACTAGG+GGG 0.740933 4_1:+1803811 Msa0528830:CDS
TGTGTAGTAAGTTGACACCA+TGG 0.752669 4_1:+1802099 Msa0528830:CDS
TGAGGAGCTAGTATGCAAAG+CGG 0.776917 4_1:+1803912 Msa0528830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATCAATATTTTAAAACAT+GGG - chr4_1:1802394-1802413 None:intergenic 10.0%
!!! ATAATCAATATTTTAAAACA+TGG - chr4_1:1802395-1802414 None:intergenic 10.0%
!!! TTTTGTATACATTATTTTGT+AGG - chr4_1:1804919-1804938 Msa0528840:three_prime_UTR 15.0%
!!! AAACTGATTCTACAATATAT+TGG + chr4_1:1802204-1802223 Msa0528830:CDS 20.0%
!!! TCATTTTCATTTTTTGTTGA+AGG - chr4_1:1803073-1803092 None:intergenic 20.0%
!! ACATTTCCAAATTCAATTTA+TGG + chr4_1:1803092-1803111 Msa0528830:intron 20.0%
!!! TGCTTTTGTTTAAATCATAT+TGG - chr4_1:1803594-1803613 Msa0528840:three_prime_UTR 20.0%
!! TGTAATGAAATATATAGACA+CGG - chr4_1:1804072-1804091 Msa0528840:intron 20.0%
!! TTATACAACTATACTGAATT+TGG + chr4_1:1804800-1804819 Msa0528830:three_prime_UTR 20.0%
!!! TTTTAAAAAGTCCATCTTAT+TGG - chr4_1:1805288-1805307 Msa0528840:CDS 20.0%
!!! AAAGATTGTAGCCATTTTTT+TGG - chr4_1:1801739-1801758 None:intergenic 25.0%
!!! TAGAAATGATGTTATTTTGC+AGG + chr4_1:1802019-1802038 Msa0528830:CDS 25.0%
!!! TGTTGTTTCTTATTAGAGAA+AGG + chr4_1:1802132-1802151 Msa0528830:CDS 25.0%
! TGATTCTACAATATATTGGT+GGG + chr4_1:1802208-1802227 Msa0528830:intron 25.0%
!! GAAATTGAGTTCTTTTCATA+TGG + chr4_1:1802270-1802289 Msa0528830:intron 25.0%
! AAGGAAAAAGCTTCTTATTA+GGG - chr4_1:1802577-1802596 None:intergenic 25.0%
!! TCAACATCTATTAGTTTACA+AGG + chr4_1:1802926-1802945 Msa0528830:intron 25.0%
! AAAACAAGTAAGACTCAATT+TGG - chr4_1:1803020-1803039 None:intergenic 25.0%
!! TTTTGTTGAAGGATATTGAT+GGG - chr4_1:1803062-1803081 None:intergenic 25.0%
!! TTTTTGTTGAAGGATATTGA+TGG - chr4_1:1803063-1803082 None:intergenic 25.0%
! TCTGATCCATAAATTGAATT+TGG - chr4_1:1803101-1803120 None:intergenic 25.0%
! ATGAAAAGAAACATATGAAG+AGG - chr4_1:1803263-1803282 Msa0528840:intron 25.0%
! ATAGTTTATTACCTGTTCAA+TGG - chr4_1:1803980-1803999 Msa0528840:intron 25.0%
! AGGTAATAAACTATACATTC+AGG + chr4_1:1803986-1804005 Msa0528830:intron 25.0%
! GGTAATAAACTATACATTCA+GGG + chr4_1:1803987-1804006 Msa0528830:intron 25.0%
!! TTTCTTGATAATATTCCAAC+TGG - chr4_1:1804358-1804377 Msa0528840:three_prime_UTR 25.0%
! AGTTGGAATATTATCAAGAA+AGG + chr4_1:1804357-1804376 Msa0528830:CDS 25.0%
!!! AAGATTAGAAGTATTTTGCA+AGG - chr4_1:1804433-1804452 Msa0528840:three_prime_UTR 25.0%
! GAAATATATGTTCCATATAG+AGG - chr4_1:1804870-1804889 Msa0528840:three_prime_UTR 25.0%
!!! ATTATTTTGTAGGAAACCAT+GGG - chr4_1:1804909-1804928 Msa0528840:three_prime_UTR 25.0%
!!! TAAGATGGACTTTTTAAAAC+CGG + chr4_1:1805289-1805308 Msa0528830:three_prime_UTR 25.0%
CAAAACCAGAACCAAAAAAA+TGG + chr4_1:1801725-1801744 Msa0528830:exon 30.0%
! AAAATGGCTACAATCTTTTC+TGG + chr4_1:1801741-1801760 Msa0528830:exon 30.0%
! TTCTCTTTTCACACAAACAA+GGG + chr4_1:1801780-1801799 Msa0528830:CDS 30.0%
CTGATTCTACAATATATTGG+TGG + chr4_1:1802207-1802226 Msa0528830:intron 30.0%
! TTGAGTTCTTTTCATATGGT+TGG + chr4_1:1802274-1802293 Msa0528830:intron 30.0%
ATTCAGTTCATTCAAAGTTC+AGG - chr4_1:1802465-1802484 None:intergenic 30.0%
TTGAATGAACTGAATTGAGT+AGG + chr4_1:1802470-1802489 Msa0528830:intron 30.0%
GAAGGAAAAAGCTTCTTATT+AGG - chr4_1:1802578-1802597 None:intergenic 30.0%
! ATTTGGAATTCTCAGATCAA+GGG + chr4_1:1802628-1802647 Msa0528830:CDS 30.0%
ACAGAAGAAGAGAAATGAAA+AGG - chr4_1:1802714-1802733 None:intergenic 30.0%
CTTAAGAACATTAACTGATC+TGG - chr4_1:1802817-1802836 None:intergenic 30.0%
GAGAGTTTCTCAATTAAAAC+CGG - chr4_1:1802980-1802999 None:intergenic 30.0%
TTAATTGAGAAACTCTCCAA+AGG + chr4_1:1802983-1803002 Msa0528830:intron 30.0%
!! TTTGGATTAGTTTCTACCTT+TGG - chr4_1:1803002-1803021 None:intergenic 30.0%
! ATGCTTCTTTTTCCTTGATA+TGG - chr4_1:1803403-1803422 Msa0528840:three_prime_UTR 30.0%
! TTTTCATGCTTCTCAATTCT+TGG + chr4_1:1803521-1803540 Msa0528830:intron 30.0%
CTACTTTGTCGTCAAAAAAA+GGG - chr4_1:1803705-1803724 Msa0528840:three_prime_UTR 30.0%
TCTACTTTGTCGTCAAAAAA+AGG - chr4_1:1803706-1803725 Msa0528840:three_prime_UTR 30.0%
! TGATTCCAATAAGAAAGCAT+CGG - chr4_1:1803839-1803858 Msa0528840:three_prime_UTR 30.0%
TATTCTCATTACCATCATGT+TGG - chr4_1:1804015-1804034 Msa0528840:intron 30.0%
! ATTGCATTTTACGTAGTACA+TGG + chr4_1:1804137-1804156 Msa0528830:intron 30.0%
! TTGCATTTTACGTAGTACAT+GGG + chr4_1:1804138-1804157 Msa0528830:intron 30.0%
TGGAATATTATCAAGAAAGG+AGG + chr4_1:1804360-1804379 Msa0528830:CDS 30.0%
CAAAATACTTCTAATCTTGC+AGG + chr4_1:1804435-1804454 Msa0528830:exon 30.0%
AACAACAGTATGTCATTAAC+TGG - chr4_1:1804472-1804491 Msa0528840:three_prime_UTR 30.0%
TGCATTCAATCAACCTTTAA+AGG + chr4_1:1804566-1804585 Msa0528830:three_prime_UTR 30.0%
GCATTCAATCAACCTTTAAA+GGG + chr4_1:1804567-1804586 Msa0528830:three_prime_UTR 30.0%
! CATTCAATCAACCTTTAAAG+GGG + chr4_1:1804568-1804587 Msa0528830:three_prime_UTR 30.0%
!! GTAATGGGTTGTAATAATTG+TGG - chr4_1:1804618-1804637 Msa0528840:three_prime_UTR 30.0%
GTTCATTCTCTATGTAATCA+CGG - chr4_1:1804735-1804754 Msa0528840:three_prime_UTR 30.0%
TACAACTATACTGAATTTGG+TGG + chr4_1:1804803-1804822 Msa0528830:three_prime_UTR 30.0%
ACAACTATACTGAATTTGGT+GGG + chr4_1:1804804-1804823 Msa0528830:three_prime_UTR 30.0%
CATGGGGAAAAAAGAAAAAT+AGG - chr4_1:1804892-1804911 Msa0528840:three_prime_UTR 30.0%
!! CTATTTTTCTTTTTTCCCCA+TGG + chr4_1:1804890-1804909 Msa0528830:three_prime_UTR 30.0%
!! TTATTTTGTAGGAAACCATG+GGG - chr4_1:1804908-1804927 Msa0528840:three_prime_UTR 30.0%
!! CATTATTTTGTAGGAAACCA+TGG - chr4_1:1804910-1804929 Msa0528840:three_prime_UTR 30.0%
AATCATTGTAGACAAACCAA+AGG - chr4_1:1805144-1805163 Msa0528840:CDS 30.0%
TTGCTTGATATGCATCAAAA+TGG - chr4_1:1805245-1805264 Msa0528840:CDS 30.0%
!!! TGTAGCCATTTTTTTGGTTC+TGG - chr4_1:1801733-1801752 None:intergenic 35.0%
! CTTCTCTTTTCACACAAACA+AGG + chr4_1:1801779-1801798 Msa0528830:CDS 35.0%
AACAACATAACAGACAACCA+TGG - chr4_1:1802119-1802138 None:intergenic 35.0%
TATTAGAGAAAGGTCAAGAG+AGG + chr4_1:1802142-1802161 Msa0528830:CDS 35.0%
!! TCTGTTTGGAAGCATTACTT+TGG + chr4_1:1802167-1802186 Msa0528830:CDS 35.0%
ATTGTAGAATCAGTTTCCTG+TGG - chr4_1:1802200-1802219 None:intergenic 35.0%
!!! ATTGGTGGGTTTCTTTTGTT+TGG + chr4_1:1802222-1802241 Msa0528830:intron 35.0%
! ATATGGTTGGTTGATTCAGT+TGG + chr4_1:1802287-1802306 Msa0528830:intron 35.0%
!! TGGTTGATTCAGTTGGTAAT+TGG + chr4_1:1802294-1802313 Msa0528830:intron 35.0%
ACTACTAACCTTGAAGTTCT+TGG - chr4_1:1802349-1802368 None:intergenic 35.0%
TTCATTCAAAGTTCAGGATG+TGG - chr4_1:1802459-1802478 None:intergenic 35.0%
! GAAGAATGAATGTCTGAAAC+TGG + chr4_1:1802535-1802554 Msa0528830:CDS 35.0%
! CATTTGGAATTCTCAGATCA+AGG + chr4_1:1802627-1802646 Msa0528830:CDS 35.0%
! CAACTAGATTTTCATTGCGA+AGG - chr4_1:1802664-1802683 None:intergenic 35.0%
! TCTAAAATTATGTCCACGCT+AGG - chr4_1:1802793-1802812 None:intergenic 35.0%
! AGGACTTCTTTTGTATGTGA+AGG + chr4_1:1802946-1802965 Msa0528830:intron 35.0%
! GGACTTCTTTTGTATGTGAA+GGG + chr4_1:1802947-1802966 Msa0528830:intron 35.0%
GATCATGCTTATGAAGTCAA+AGG + chr4_1:1803150-1803169 Msa0528830:CDS 35.0%
!!! CAGTTGGTAACTTTTACTGT+AGG + chr4_1:1803561-1803580 Msa0528830:intron 35.0%
AAACAAAAGCAATGCAGAGT+TGG + chr4_1:1803603-1803622 Msa0528830:CDS 35.0%
TATGCATATCGATCTGCATT+TGG - chr4_1:1803652-1803671 Msa0528840:three_prime_UTR 35.0%
! AGTGCTACTAATCTCAGATA+TGG - chr4_1:1803808-1803827 Msa0528840:three_prime_UTR 35.0%
! TATCTGAGATTAGTAGCACT+AGG + chr4_1:1803808-1803827 Msa0528830:CDS 35.0%
! ATCTGAGATTAGTAGCACTA+GGG + chr4_1:1803809-1803828 Msa0528830:CDS 35.0%
ATACTAGCTCCTCATTATCA+CGG - chr4_1:1803906-1803925 Msa0528840:three_prime_UTR 35.0%
TTATCACACAACCATTGAAC+AGG + chr4_1:1803966-1803985 Msa0528830:CDS 35.0%
GTACTACGTAAAATGCAATG+AGG - chr4_1:1804136-1804155 Msa0528840:intron 35.0%
GAACAAAGCATACAAATTGC+AGG + chr4_1:1804208-1804227 Msa0528830:intron 35.0%
AAGAGGCAAATCTAGATTCA+AGG + chr4_1:1804243-1804262 Msa0528830:CDS 35.0%
! ACTGTTGTTTGTATCTCTTG+AGG + chr4_1:1804483-1804502 Msa0528830:three_prime_UTR 35.0%
GGATGAAAAAACTGAACACT+TGG + chr4_1:1804504-1804523 Msa0528830:three_prime_UTR 35.0%
! CAACTATACTGAATTTGGTG+GGG + chr4_1:1804805-1804824 Msa0528830:three_prime_UTR 35.0%
! AACTATACTGAATTTGGTGG+GGG + chr4_1:1804806-1804825 Msa0528830:three_prime_UTR 35.0%
! ATTTGGTGGGGGAAAAAATA+AGG + chr4_1:1804817-1804836 Msa0528830:three_prime_UTR 35.0%
TTTGGTGGGGGAAAAAATAA+GGG + chr4_1:1804818-1804837 Msa0528830:three_prime_UTR 35.0%
ATGCAAGAGCAATCTGAAAA+TGG - chr4_1:1804973-1804992 Msa0528840:three_prime_UTR 35.0%
AGATTGCTCTTGCATACTTA+TGG + chr4_1:1804978-1804997 Msa0528830:three_prime_UTR 35.0%
CTTACTTGAGTAGAGTTATG+AGG + chr4_1:1805047-1805066 Msa0528830:three_prime_UTR 35.0%
!! ACAAAGTGTGATGATTTGCT+AGG - chr4_1:1805074-1805093 Msa0528840:CDS 35.0%
TAGAAATAATCCTCCTCCTT+TGG + chr4_1:1805125-1805144 Msa0528830:three_prime_UTR 35.0%
ACAATGATTCGACGATAAGT+CGG + chr4_1:1805155-1805174 Msa0528830:three_prime_UTR 35.0%
TACAAACTCATTCCATGGAA+GGG + chr4_1:1805217-1805236 Msa0528830:three_prime_UTR 35.0%
AAAAGTCCATCTTATTGGAC+CGG - chr4_1:1805283-1805302 Msa0528840:CDS 35.0%
! ATGGCTACAATCTTTTCTGG+AGG + chr4_1:1801744-1801763 Msa0528830:CDS 40.0%
!! CAGATGAAGAGTTGGTACTT+TGG - chr4_1:1801823-1801842 None:intergenic 40.0%
GGTTTCTTCAGATGAAGAGT+TGG - chr4_1:1801831-1801850 None:intergenic 40.0%
!! GCTACTGATTTGACAGAGAA+AGG - chr4_1:1801852-1801871 None:intergenic 40.0%
GTCAAATCAGTAGCTTCACT+TGG + chr4_1:1801858-1801877 Msa0528830:CDS 40.0%
!! TTATTTTGCAGGTGCCTAAG+AGG + chr4_1:1802030-1802049 Msa0528830:CDS 40.0%
GGATTTATCCACAACCTCTT+AGG - chr4_1:1802047-1802066 None:intergenic 40.0%
! TGTGTAGTAAGTTGACACCA+TGG + chr4_1:1802099-1802118 Msa0528830:CDS 40.0%
TTACTTTGGTATTCTGCCAC+AGG + chr4_1:1802181-1802200 Msa0528830:CDS 40.0%
GTAATTGGTTATTCCAGTGC+AGG + chr4_1:1802309-1802328 Msa0528830:intron 40.0%
TGTCTATGATATTCCTAGCG+TGG + chr4_1:1802777-1802796 Msa0528830:intron 40.0%
ATGATCATCTGTAGTCACTC+TGG - chr4_1:1803136-1803155 Msa0528840:three_prime_UTR 40.0%
TTTCCTTGATATGGAAGAGC+TGG - chr4_1:1803394-1803413 Msa0528840:three_prime_UTR 40.0%
!! CTTTCTGGCTCTGATACATT+TGG - chr4_1:1803437-1803456 Msa0528840:three_prime_UTR 40.0%
AAAGTTCTGCTGCAACTTTC+TGG - chr4_1:1803452-1803471 Msa0528840:three_prime_UTR 40.0%
CACATTCATAACTGTGCAGT+TGG + chr4_1:1803545-1803564 Msa0528830:intron 40.0%
ATATGCATACACCTTGACAC+TGG + chr4_1:1803663-1803682 Msa0528830:CDS 40.0%
TATGCATACACCTTGACACT+GGG + chr4_1:1803664-1803683 Msa0528830:CDS 40.0%
GTCAAAAAAAGGGTCTGACT+CGG - chr4_1:1803695-1803714 Msa0528840:three_prime_UTR 40.0%
TGCTGTCTGAGAAAAACCAT+TGG - chr4_1:1803740-1803759 Msa0528840:three_prime_UTR 40.0%
! TCTGAGATTAGTAGCACTAG+GGG + chr4_1:1803810-1803829 Msa0528830:CDS 40.0%
ATAGCAGTCGGAATAAGAGA+AGG + chr4_1:1804272-1804291 Msa0528830:CDS 40.0%
TAGCAGTCGGAATAAGAGAA+GGG + chr4_1:1804273-1804292 Msa0528830:CDS 40.0%
AAGGGGAAAAAATGATCCTG+CGG + chr4_1:1804291-1804310 Msa0528830:CDS 40.0%
GATCTTCGAGCAGAAAGAAT+TGG + chr4_1:1804325-1804344 Msa0528830:CDS 40.0%
AGAATTGGAACTAGACCAGT+TGG + chr4_1:1804340-1804359 Msa0528830:CDS 40.0%
TTATCAAGAAAGGAGGCTCA+AGG + chr4_1:1804367-1804386 Msa0528830:CDS 40.0%
! AGTATTTTGCAAGGTCTCCA+AGG - chr4_1:1804424-1804443 Msa0528840:three_prime_UTR 40.0%
ATCGCAAATGTAGCCTTCTA+CGG + chr4_1:1804530-1804549 Msa0528830:three_prime_UTR 40.0%
TTGATCATCGTCCCCTTTAA+AGG - chr4_1:1804582-1804601 Msa0528840:three_prime_UTR 40.0%
! CGATGATCAAGTTTTTGACC+CGG + chr4_1:1804592-1804611 Msa0528830:three_prime_UTR 40.0%
TGGGTTGTAATAATTGTGGC+CGG - chr4_1:1804614-1804633 Msa0528840:three_prime_UTR 40.0%
! TTTTCCACTTTACAAGCTGC+AGG - chr4_1:1804644-1804663 Msa0528840:three_prime_UTR 40.0%
CATCTTTGCAAGCCTCTATA+TGG + chr4_1:1804855-1804874 Msa0528830:three_prime_UTR 40.0%
TGCTCTTGCATACTTATGGT+TGG + chr4_1:1804982-1805001 Msa0528830:three_prime_UTR 40.0%
GCTCTTGCATACTTATGGTT+GGG + chr4_1:1804983-1805002 Msa0528830:three_prime_UTR 40.0%
CATTGTAGACAAACCAAAGG+AGG - chr4_1:1805141-1805160 Msa0528840:CDS 40.0%
CAGGTTCACGAAAAGAGAAT+GGG - chr4_1:1805185-1805204 Msa0528840:CDS 40.0%
ACAGGTTCACGAAAAGAGAA+TGG - chr4_1:1805186-1805205 Msa0528840:CDS 40.0%
GCATCTACAAACTCATTCCA+TGG + chr4_1:1805212-1805231 Msa0528830:three_prime_UTR 40.0%
CTACAAACTCATTCCATGGA+AGG + chr4_1:1805216-1805235 Msa0528830:three_prime_UTR 40.0%
ATCAAAATGGAACCCTTCCA+TGG - chr4_1:1805232-1805251 Msa0528840:CDS 40.0%
! GCAATTGTACAAGCCTTTTC+CGG + chr4_1:1805261-1805280 Msa0528830:three_prime_UTR 40.0%
TTCCAGAAGGTTTGAACTGC+TGG - chr4_1:1801903-1801922 None:intergenic 45.0%
! CAGTTCAAACCTTCTGGAAG+TGG + chr4_1:1801904-1801923 Msa0528830:CDS 45.0%
TTCTTGTAGCCACTTCCAGA+AGG - chr4_1:1801916-1801935 None:intergenic 45.0%
TGGAAGTGGCTACAAGAAGA+AGG + chr4_1:1801918-1801937 Msa0528830:CDS 45.0%
!! ACTAGCTTTCACTGGTGTCT+TGG - chr4_1:1801955-1801974 None:intergenic 45.0%
AAAGCTAGTGTGGTACCAGA+AGG + chr4_1:1801966-1801985 Msa0528830:CDS 45.0%
AGTGTGGTACCAGAAGGTTT+AGG + chr4_1:1801972-1801991 Msa0528830:CDS 45.0%
! GGTACCAGAAGGTTTAGGAT+TGG + chr4_1:1801977-1801996 Msa0528830:CDS 45.0%
GCAACCAATCCTAAACCTTC+TGG - chr4_1:1801984-1802003 None:intergenic 45.0%
! CTGTTGCTGCTTCAGAGATA+GGG + chr4_1:1802072-1802091 Msa0528830:CDS 45.0%
GGTCAAGAGAGGATTCTGTT+TGG + chr4_1:1802153-1802172 Msa0528830:CDS 45.0%
GAAGAGCTCCAAGAACTTCA+AGG + chr4_1:1802338-1802357 Msa0528830:CDS 45.0%
! TTTTCCTTCTCCTGTGACAC+TGG + chr4_1:1802589-1802608 Msa0528830:CDS 45.0%
AAGAAGTCATCCAGTGTCAC+AGG - chr4_1:1802602-1802621 None:intergenic 45.0%
TGACACTGGATGACTTCTTC+TGG + chr4_1:1802603-1802622 Msa0528830:CDS 45.0%
GACACTGGATGACTTCTTCT+GGG + chr4_1:1802604-1802623 Msa0528830:CDS 45.0%
GATGACTTCTTCTGGGCATT+TGG + chr4_1:1802611-1802630 Msa0528830:CDS 45.0%
TGTGATTCCACTTGCAGACT+TGG + chr4_1:1802682-1802701 Msa0528830:CDS 45.0%
GTTCTTACCAAGTCTGCAAG+TGG - chr4_1:1802692-1802711 None:intergenic 45.0%
TCTGTATCATGCAGCTGTAG+AGG + chr4_1:1802729-1802748 Msa0528830:intron 45.0%
GTATGTGAAGGGTCGTAAAC+CGG + chr4_1:1802958-1802977 Msa0528830:intron 45.0%
TATGAAGTCAAAGGACCAGC+TGG + chr4_1:1803159-1803178 Msa0528830:CDS 45.0%
!!! ACCAGCTGGTCTTTTCTCTT+GGG + chr4_1:1803173-1803192 Msa0528830:CDS 45.0%
GGGATTACCTATTTGCCCTA+AGG + chr4_1:1803193-1803212 Msa0528830:CDS 45.0%
TTCTCCTGCCTTGACAGAAA+GGG - chr4_1:1803223-1803242 Msa0528840:three_prime_UTR 45.0%
AATACATCCATGTCCATCCG+AGG + chr4_1:1803315-1803334 Msa0528830:intron 45.0%
ATACATCCATGTCCATCCGA+GGG + chr4_1:1803316-1803335 Msa0528830:intron 45.0%
TAGCCAGCTCTTCCATATCA+AGG + chr4_1:1803388-1803407 Msa0528830:intron 45.0%
GCAATCCAAGCTGTATTCTG+AGG + chr4_1:1803472-1803491 Msa0528830:intron 45.0%
ATGCATACACCTTGACACTG+GGG + chr4_1:1803665-1803684 Msa0528830:CDS 45.0%
!! AGATATGGAAGCATCCCTTC+TGG - chr4_1:1803793-1803812 Msa0528840:three_prime_UTR 45.0%
CTGAGATTAGTAGCACTAGG+GGG + chr4_1:1803811-1803830 Msa0528830:CDS 45.0%
!! GGGTACCGATGCTTTCTTAT+TGG + chr4_1:1803831-1803850 Msa0528830:CDS 45.0%
ACTGTTCAGAGACTCCATCT+GGG + chr4_1:1803858-1803877 Msa0528830:CDS 45.0%
TCCTCATTATCACGGCTCAT+GGG - chr4_1:1803898-1803917 Msa0528840:three_prime_UTR 45.0%
TGAGGAGCTAGTATGCAAAG+CGG + chr4_1:1803912-1803931 Msa0528830:CDS 45.0%
GGTTGTGTGATAACCAGCAA+GGG - chr4_1:1803959-1803978 Msa0528840:three_prime_UTR 45.0%
TGGTTGTGTGATAACCAGCA+AGG - chr4_1:1803960-1803979 Msa0528840:three_prime_UTR 45.0%
CATTCAGGGTTCCAACATGA+TGG + chr4_1:1804001-1804020 Msa0528830:intron 45.0%
TCAAGGCTTGCAATAGCAGT+CGG + chr4_1:1804260-1804279 Msa0528830:CDS 45.0%
AGCAGTCGGAATAAGAGAAG+GGG + chr4_1:1804274-1804293 Msa0528830:CDS 45.0%
AGATCTCATCAATTTGCCGC+AGG - chr4_1:1804310-1804329 Msa0528840:three_prime_UTR 45.0%
CTCAAGGATCTTGGACTTTG+CGG + chr4_1:1804383-1804402 Msa0528830:CDS 45.0%
GGGTTGTAATAATTGTGGCC+GGG - chr4_1:1804613-1804632 Msa0528840:three_prime_UTR 45.0%
ACAAGCTGCAGGCATGTAAT+GGG - chr4_1:1804633-1804652 Msa0528840:three_prime_UTR 45.0%
TACAAGCTGCAGGCATGTAA+TGG - chr4_1:1804634-1804653 Msa0528840:three_prime_UTR 45.0%
! TCTCTAAGAACTTATGCCCG+AGG + chr4_1:1804940-1804959 Msa0528830:three_prime_UTR 45.0%
! CTCTAAGAACTTATGCCCGA+GGG + chr4_1:1804941-1804960 Msa0528830:three_prime_UTR 45.0%
CACACTTTGTTCCCTCACAA+AGG + chr4_1:1805084-1805103 Msa0528830:three_prime_UTR 45.0%
TGTAGACAAACCAAAGGAGG+AGG - chr4_1:1805138-1805157 Msa0528840:CDS 45.0%
CCATCTTATTGGACCGGAAA+AGG - chr4_1:1805277-1805296 Msa0528840:CDS 45.0%
! CCTTTTCCGGTCCAATAAGA+TGG + chr4_1:1805274-1805293 Msa0528830:three_prime_UTR 45.0%
CTCCAGCAGTTCAAACCTTC+TGG + chr4_1:1801898-1801917 Msa0528830:CDS 50.0%
GACACCAGTGAAAGCTAGTG+TGG + chr4_1:1801956-1801975 Msa0528830:CDS 50.0%
!! GGTACCACACTAGCTTTCAC+TGG - chr4_1:1801963-1801982 None:intergenic 50.0%
! TCTGAAGCAGCAACAGCATC+AGG - chr4_1:1802068-1802087 None:intergenic 50.0%
! GCTGTTGCTGCTTCAGAGAT+AGG + chr4_1:1802071-1802090 Msa0528830:CDS 50.0%
! TTGCTGCTTCAGAGATAGGG+AGG + chr4_1:1802075-1802094 Msa0528830:CDS 50.0%
! TGCTGCTTCAGAGATAGGGA+GGG + chr4_1:1802076-1802095 Msa0528830:CDS 50.0%
GTTATTCCAGTGCAGGTCAG+AGG + chr4_1:1802316-1802335 Msa0528830:intron 50.0%
TCATCCAGTGTCACAGGAGA+AGG - chr4_1:1802596-1802615 None:intergenic 50.0%
!!! GACCAGCTGGTCTTTTCTCT+TGG + chr4_1:1803172-1803191 Msa0528830:CDS 50.0%
TCCCAAGAGAAAAGACCAGC+TGG - chr4_1:1803177-1803196 Msa0528840:three_prime_UTR 50.0%
TCTCCTGCCTTGACAGAAAG+GGG - chr4_1:1803222-1803241 Msa0528840:three_prime_UTR 50.0%
GTTCTCCTGCCTTGACAGAA+AGG - chr4_1:1803224-1803243 Msa0528840:three_prime_UTR 50.0%
TTCTGTCAAGGCAGGAGAAC+AGG + chr4_1:1803224-1803243 Msa0528830:CDS 50.0%
TACATCCATGTCCATCCGAG+GGG + chr4_1:1803317-1803336 Msa0528830:intron 50.0%
TTGCGCCTCAGAATACAGCT+TGG - chr4_1:1803480-1803499 Msa0528840:three_prime_UTR 50.0%
! AAGCAATGCAGAGTTGGCTC+TGG + chr4_1:1803609-1803628 Msa0528830:CDS 50.0%
GTAGACGTTGCTGAGACCAA+TGG + chr4_1:1803721-1803740 Msa0528830:CDS 50.0%
TATAACCGCCCTCTTCCAGA+AGG + chr4_1:1803775-1803794 Msa0528830:CDS 50.0%
ATAACCGCCCTCTTCCAGAA+GGG + chr4_1:1803776-1803795 Msa0528830:CDS 50.0%
! GAAGCATCCCTTCTGGAAGA+GGG - chr4_1:1803786-1803805 Msa0528840:three_prime_UTR 50.0%
CACTGTTCAGAGACTCCATC+TGG + chr4_1:1803857-1803876 Msa0528830:CDS 50.0%
CTGTTCAGAGACTCCATCTG+GGG + chr4_1:1803859-1803878 Msa0528830:CDS 50.0%
CTCCTCATTATCACGGCTCA+TGG - chr4_1:1803899-1803918 Msa0528840:three_prime_UTR 50.0%
TGTGTGATAACCAGCAAGGG+CGG - chr4_1:1803956-1803975 Msa0528840:three_prime_UTR 50.0%
GAAAGGAGGCTCAAGGATCT+TGG + chr4_1:1804374-1804393 Msa0528830:CDS 50.0%
CTTGGACTTTGCGGTGAAAG+TGG + chr4_1:1804392-1804411 Msa0528830:CDS 50.0%
! GGTGAAAGTGGTGATGTCCT+TGG + chr4_1:1804404-1804423 Msa0528830:CDS 50.0%
TCACATGCGTTCACCGTAGA+AGG - chr4_1:1804546-1804565 Msa0528840:three_prime_UTR 50.0%
CATGCCTGCAGCTTGTAAAG+TGG + chr4_1:1804637-1804656 Msa0528830:three_prime_UTR 50.0%
AAGAACTTATGCCCGAGGGA+AGG + chr4_1:1804945-1804964 Msa0528830:three_prime_UTR 50.0%
TGAAAATGGCTCCTTCCCTC+GGG - chr4_1:1804959-1804978 Msa0528840:three_prime_UTR 50.0%
CTGAAAATGGCTCCTTCCCT+CGG - chr4_1:1804960-1804979 Msa0528840:three_prime_UTR 50.0%
CCTCATGAGTGCCTTTGTGA+GGG - chr4_1:1805098-1805117 Msa0528840:CDS 50.0%
!! CCTCACAAAGGCACTCATGA+GGG + chr4_1:1805096-1805115 Msa0528830:three_prime_UTR 50.0%
!! ACAAAGGCACTCATGAGGGT+TGG + chr4_1:1805100-1805119 Msa0528830:three_prime_UTR 50.0%
GTTTGTAGATGCTGTGCGAC+AGG - chr4_1:1805204-1805223 Msa0528840:CDS 50.0%
TAGCGCTCATGCAGGTATTC+CGG - chr4_1:1805311-1805330 Msa0528840:intron 50.0%
TGCAGGTGCCTAAGAGGTTG+TGG + chr4_1:1802036-1802055 Msa0528830:CDS 55.0%
CTGTAGTCACTCTGGCACTG+TGG - chr4_1:1803128-1803147 Msa0528840:three_prime_UTR 55.0%
GACAGAAAGGGGGCTCCTTA+GGG - chr4_1:1803211-1803230 Msa0528840:three_prime_UTR 55.0%
TGACAGAAAGGGGGCTCCTT+AGG - chr4_1:1803212-1803231 Msa0528840:three_prime_UTR 55.0%
AAGGAGCCCCCTTTCTGTCA+AGG + chr4_1:1803212-1803231 Msa0528830:CDS 55.0%
CTCCTGCCTTGACAGAAAGG+GGG - chr4_1:1803221-1803240 Msa0528840:three_prime_UTR 55.0%
GAAAACCCCTCGGATGGACA+TGG - chr4_1:1803325-1803344 Msa0528840:intron 55.0%
! TCCATCCGAGGGGTTTTCGA+CGG + chr4_1:1803327-1803346 Msa0528830:intron 55.0%
TCCTACCGTCGAAAACCCCT+CGG - chr4_1:1803335-1803354 Msa0528840:intron 55.0%
!! GCAGAGTTGGCTCTGGACTA+TGG + chr4_1:1803616-1803635 Msa0528830:CDS 55.0%
CTCGGATATCCCCAGTGTCA+AGG - chr4_1:1803677-1803696 Msa0528840:three_prime_UTR 55.0%
!! GGAAGCATCCCTTCTGGAAG+AGG - chr4_1:1803787-1803806 Msa0528840:three_prime_UTR 55.0%
! CTCCATCTGGGGTCATCTTG+AGG + chr4_1:1803870-1803889 Msa0528830:CDS 55.0%
CACCTCAAGATGACCCCAGA+TGG - chr4_1:1803875-1803894 Msa0528840:three_prime_UTR 55.0%
! GCCCATGAGCCGTGATAATG+AGG + chr4_1:1803894-1803913 Msa0528830:CDS 55.0%
GCAGGATCGCAAGCTGAAAG+AGG + chr4_1:1804226-1804245 Msa0528830:intron 55.0%
!! CCCTCACAAAGGCACTCATG+AGG + chr4_1:1805095-1805114 Msa0528830:three_prime_UTR 55.0%
CCCTCATGAGTGCCTTTGTG+AGG - chr4_1:1805099-1805118 Msa0528840:CDS 55.0%
GCTCTTCCTCTGACCTGCAC+TGG - chr4_1:1802325-1802344 None:intergenic 60.0%
GGGGGCTCCTTAGGGCAAAT+AGG - chr4_1:1803203-1803222 Msa0528840:three_prime_UTR 60.0%
AGCCCCCTTTCTGTCAAGGC+AGG + chr4_1:1803216-1803235 Msa0528830:CDS 60.0%
ACCGTCGAAAACCCCTCGGA+TGG - chr4_1:1803331-1803350 Msa0528840:intron 60.0%
! TCCGAGGGGTTTTCGACGGT+AGG + chr4_1:1803331-1803350 Msa0528830:intron 60.0%
! GCATCCCTTCTGGAAGAGGG+CGG - chr4_1:1803783-1803802 Msa0528840:three_prime_UTR 60.0%
! ACCAGCAAGGGCGGATTTGC+AGG - chr4_1:1803947-1803966 Msa0528840:three_prime_UTR 60.0%
GCCTGCAAATCCGCCCTTGC+TGG + chr4_1:1803943-1803962 Msa0528830:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 1801666 1805334 1801666 ID=Msa0528830;Name=Msa0528830
chr4_1 mRNA 1801666 1805334 1801666 ID=Msa0528830-mRNA-1;Parent=Msa0528830;Name=Msa0528830-mRNA-1;_AED=0.14;_eAED=0.14;_QI=78|1|1|1|1|1|6|886|490
chr4_1 exon 1801666 1802225 1801666 ID=Msa0528830-mRNA-1:exon:545;Parent=Msa0528830-mRNA-1
chr4_1 exon 1802331 1802359 1802331 ID=Msa0528830-mRNA-1:exon:546;Parent=Msa0528830-mRNA-1
chr4_1 exon 1802492 1802703 1802492 ID=Msa0528830-mRNA-1:exon:547;Parent=Msa0528830-mRNA-1
chr4_1 exon 1803120 1803245 1803120 ID=Msa0528830-mRNA-1:exon:548;Parent=Msa0528830-mRNA-1
chr4_1 exon 1803583 1803987 1803583 ID=Msa0528830-mRNA-1:exon:549;Parent=Msa0528830-mRNA-1
chr4_1 exon 1804230 1805334 1804230 ID=Msa0528830-mRNA-1:exon:550;Parent=Msa0528830-mRNA-1
chr4_1 five_prime_UTR 1801666 1801743 1801666 ID=Msa0528830-mRNA-1:five_prime_utr;Parent=Msa0528830-mRNA-1
chr4_1 CDS 1801744 1802225 1801744 ID=Msa0528830-mRNA-1:cds;Parent=Msa0528830-mRNA-1
chr4_1 CDS 1802331 1802359 1802331 ID=Msa0528830-mRNA-1:cds;Parent=Msa0528830-mRNA-1
chr4_1 CDS 1802492 1802703 1802492 ID=Msa0528830-mRNA-1:cds;Parent=Msa0528830-mRNA-1
chr4_1 CDS 1803120 1803245 1803120 ID=Msa0528830-mRNA-1:cds;Parent=Msa0528830-mRNA-1
chr4_1 CDS 1803583 1803987 1803583 ID=Msa0528830-mRNA-1:cds;Parent=Msa0528830-mRNA-1
chr4_1 CDS 1804230 1804448 1804230 ID=Msa0528830-mRNA-1:cds;Parent=Msa0528830-mRNA-1
chr4_1 three_prime_UTR 1804449 1805334 1804449 ID=Msa0528830-mRNA-1:three_prime_utr;Parent=Msa0528830-mRNA-1
Gene Sequence

>Msa0528830

ATGGCTACAATCTTTTCTGGAGGTTCAGTTTCACTCTTCTCTTTTCACACAAACAAGGGTAAATCATCTTTTGCAACCAAAGTACCAACTCTTCATCTGAAGAAACCTTTCTCTGTCAAATCAGTAGCTTCACTTGGAACTGAAACATCACTGTCTCCAGCAGTTCAAACCTTCTGGAAGTGGCTACAAGAAGAAGGTGTTATCACTGCCAAGACACCAGTGAAAGCTAGTGTGGTACCAGAAGGTTTAGGATTGGTTGCACTCAAAGATATTTCTAGAAATGATGTTATTTTGCAGGTGCCTAAGAGGTTGTGGATAAATCCTGATGCTGTTGCTGCTTCAGAGATAGGGAGGGTGTGTAGTAAGTTGACACCATGGTTGTCTGTTATGTTGTTTCTTATTAGAGAAAGGTCAAGAGAGGATTCTGTTTGGAAGCATTACTTTGGTATTCTGCCACAGGAAACTGATTCTACAATATATTGGTCAGAGGAAGAGCTCCAAGAACTTCAAGGTACTCAACTTCTGAACACAACACTGTCTGTGAAAGAATATGTGAAGAATGAATGTCTGAAACTGGAAAAAGAAATCATTCTCCCTAATAAGAAGCTTTTTCCTTCTCCTGTGACACTGGATGACTTCTTCTGGGCATTTGGAATTCTCAGATCAAGGGCATTTTCTCGCCTTCGCAATGAAAATCTAGTTGTGATTCCACTTGCAGACTTGATTAACCACAGTGCCAGAGTGACTACAGATGATCATGCTTATGAAGTCAAAGGACCAGCTGGTCTTTTCTCTTGGGATTACCTATTTGCCCTAAGGAGCCCCCTTTCTGTCAAGGCAGGAGAACAGGTGTATATCCAATATGATTTAAACAAAAGCAATGCAGAGTTGGCTCTGGACTATGGTTTCATTGAACCAAATGCAGATCGATATGCATACACCTTGACACTGGGGATATCCGAGTCAGACCCTTTTTTTGACGACAAAGTAGACGTTGCTGAGACCAATGGTTTTTCTCAGACAGCATACTTTGACATCTTCTATAACCGCCCTCTTCCAGAAGGGATGCTTCCATATCTGAGATTAGTAGCACTAGGGGGTACCGATGCTTTCTTATTGGAATCACTGTTCAGAGACTCCATCTGGGGTCATCTTGAGGTGCCCATGAGCCGTGATAATGAGGAGCTAGTATGCAAAGCGGTTCGAGATGCCTGCAAATCCGCCCTTGCTGGTTATCACACAACCATTGAACAGGATCGCAAGCTGAAAGAGGCAAATCTAGATTCAAGGCTTGCAATAGCAGTCGGAATAAGAGAAGGGGAAAAAATGATCCTGCGGCAAATTGATGAGATCTTCGAGCAGAAAGAATTGGAACTAGACCAGTTGGAATATTATCAAGAAAGGAGGCTCAAGGATCTTGGACTTTGCGGTGAAAGTGGTGATGTCCTTGGAGACCTTGCAAAATACTTCTAA

Protein sequence

>Msa0528830

MATIFSGGSVSLFSFHTNKGKSSFATKVPTLHLKKPFSVKSVASLGTETSLSPAVQTFWKWLQEEGVITAKTPVKASVVPEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSKLTPWLSVMLFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGTQLLNTTLSVKEYVKNECLKLEKEIILPNKKLFPSPVTLDDFFWAFGILRSRAFSRLRNENLVVIPLADLINHSARVTTDDHAYEVKGPAGLFSWDYLFALRSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNADRYAYTLTLGISESDPFFDDKVDVAETNGFSQTAYFDIFYNRPLPEGMLPYLRLVALGGTDAFLLESLFRDSIWGHLEVPMSRDNEELVCKAVRDACKSALAGYHTTIEQDRKLKEANLDSRLAIAVGIREGEKMILRQIDEIFEQKELELDQLEYYQERRLKDLGLCGESGDVLGDLAKYF*