AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1074560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1074560 MtrunA17_Chr7g0244961 81.298 262 5 2 1 218 1 262 2.04e-126 357
Msa1074560 MtrunA17_Chr3g0139261 35.407 209 97 2 34 204 7 215 5.99e-33 118
Msa1074560 MtrunA17_Chr1g0147511 33.953 215 104 2 34 210 7 221 2.61e-32 117
Msa1074560 MtrunA17_Chr1g0188581 37.107 159 95 1 51 204 59 217 5.26e-28 105
Msa1074560 MtrunA17_Chr6g0477471 35.032 157 99 1 51 204 59 215 7.22e-24 95.1
Msa1074560 MtrunA17_Chr6g0477681 33.758 157 101 1 51 204 59 215 7.41e-23 92.4
Msa1074560 MtrunA17_Chr6g0477661 30.994 171 110 2 51 218 59 224 7.21e-21 87.0
Msa1074560 MtrunA17_Chr5g0428761 25.926 162 110 2 52 204 58 218 2.61e-13 67.0
Msa1074560 MtrunA17_Chr8g0392461 27.907 172 112 3 43 209 49 213 9.16e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1074560 AT5G43180.1 48.864 176 72 2 46 203 53 228 5.90e-42 142
Msa1074560 AT5G10580.3 36.207 174 100 1 50 212 58 231 6.06e-28 106
Msa1074560 AT4G31330.1 38.037 163 92 2 50 203 58 220 8.62e-28 105
Msa1074560 AT5G10580.1 36.207 174 100 1 50 212 58 231 9.53e-28 105
Msa1074560 AT5G10580.4 36.207 174 100 1 50 212 58 231 9.53e-28 105
Msa1074560 AT5G24790.1 30.939 181 115 3 48 218 55 235 2.91e-15 72.8
Msa1074560 AT5G24600.2 30.357 168 100 3 50 202 56 221 1.58e-14 70.5
Msa1074560 AT5G24600.1 30.357 168 100 3 50 202 56 221 1.62e-14 70.5
Msa1074560 AT5G10580.2 32.000 125 74 1 50 163 58 182 1.57e-11 61.6

Find 49 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACAAAGTGTATTGGAAAA+AGG 0.170764 7_2:+72472967 Msa1074560:CDS
GATGGGAGAAGGTATTTATT+TGG 0.189582 7_2:+72471961 Msa1074560:CDS
TTGCTATTCCTTTGATGCTT+TGG 0.254308 7_2:+72473028 Msa1074560:CDS
AACCCCTAAGGCCAAAATTT+AGG 0.268543 7_2:+72471908 Msa1074560:CDS
GCCTTAGGGGTTGGTTTGGT+TGG 0.308087 7_2:-72471897 None:intergenic
TTTGTGACCCTGTGGTAATT+TGG 0.309974 7_2:-72473124 None:intergenic
TTGTGACCCTGTGGTAATTT+GGG 0.317101 7_2:-72473123 None:intergenic
GATGCAGGGTGATGATAAAA+AGG 0.334165 7_2:+72472648 Msa1074560:intron
CCTTTGATGCTTTGGATGTT+GGG 0.346934 7_2:+72473036 Msa1074560:CDS
TCCTTTGATGCTTTGGATGT+TGG 0.347676 7_2:+72473035 Msa1074560:CDS
TTTGGCCTTAGGGGTTGGTT+TGG 0.368270 7_2:-72471901 None:intergenic
AATGTGATGGCTTCTTATAA+TGG 0.389107 7_2:-72471861 None:intergenic
GAAGTGTTCCATGTGTGAAT+TGG 0.394861 7_2:+72473235 Msa1074560:three_prime_UTR
AAGCCATCACATTTCATTCA+AGG 0.399299 7_2:+72471871 Msa1074560:CDS
AAGGCTCAAAGGGACTAATA+TGG 0.413031 7_2:-72471987 None:intergenic
ATTGGGATTACACAGTATAT+TGG 0.414048 7_2:+72473253 Msa1074560:three_prime_UTR
CTAATCAACAAACAAATTGA+TGG 0.416486 7_2:-72472856 None:intergenic
TGCTTCATCACTAAGGAAGA+TGG 0.429291 7_2:+72471943 Msa1074560:intron
GTTTACAAGAATTGTTATAG+TGG 0.442990 7_2:-72472725 None:intergenic
AAGTGTTCCATGTGTGAATT+GGG 0.444471 7_2:+72473236 Msa1074560:three_prime_UTR
TGCATCAATTAGAAATCCTA+TGG 0.457940 7_2:-72472899 None:intergenic
TTGTAATGAAAAGGCTCAAA+GGG 0.468311 7_2:-72471997 None:intergenic
GGTAAACTATTGTAATGAAA+AGG 0.473865 7_2:-72472006 None:intergenic
ATGGTGAACCATACTTCAAA+AGG 0.478925 7_2:-72472837 None:intergenic
TAGTTTCTTATGCAGCTCAA+TGG 0.486320 7_2:+72472876 Msa1074560:CDS
CCCAACATCCAAAGCATCAA+AGG 0.490638 7_2:-72473036 None:intergenic
TAAAATAACCAACCTAGCTA+TGG 0.509365 7_2:+72473160 Msa1074560:exon
AGTATATTGGTGGTTGAAAG+TGG 0.527619 7_2:+72473266 Msa1074560:three_prime_UTR
TTATGCAGCTCAATGGCCAT+AGG 0.528060 7_2:+72472883 Msa1074560:CDS
GGGATTACACAGTATATTGG+TGG 0.538985 7_2:+72473256 Msa1074560:three_prime_UTR
CAACAAACAAACCAAAGCTA+TGG 0.541351 7_2:-72473082 None:intergenic
GGGTTACACACAAAGTGTAT+TGG 0.547539 7_2:+72472960 Msa1074560:CDS
TTATGTCCCCAAATTACCAC+AGG 0.550867 7_2:+72473116 Msa1074560:CDS
GCTTCATCACTAAGGAAGAT+GGG 0.552849 7_2:+72471944 Msa1074560:intron
ATTGTAATGAAAAGGCTCAA+AGG 0.570402 7_2:-72471998 None:intergenic
TCTATTACCAACAAAAGCTA+AGG 0.570747 7_2:-72472995 None:intergenic
ACCAACCAAACCAACCCCTA+AGG 0.573569 7_2:+72471896 Msa1074560:CDS
TATAACAATTCTTGTAAACA+TGG 0.574398 7_2:+72472729 Msa1074560:CDS
CAAACAAACCAAAGCTATGG+AGG 0.579997 7_2:-72473079 None:intergenic
GGTCATAAGAGTGTTCCTCA+TGG 0.580413 7_2:-72472689 None:intergenic
TATAGTGGCTGTGAGTATTG+TGG 0.587578 7_2:-72472710 None:intergenic
TCACTAAGGAAGATGGGAGA+AGG 0.612483 7_2:+72471950 Msa1074560:intron
ACTCTTCTCATATAGTGCAA+TGG 0.614939 7_2:-72471838 None:intergenic
TAACCTTGAATGAAATGTGA+TGG 0.621540 7_2:-72471874 None:intergenic
TGTGACCCTGTGGTAATTTG+GGG 0.624411 7_2:-72473122 None:intergenic
GTGTAATCCCAATTCACACA+TGG 0.668299 7_2:-72473243 None:intergenic
TGCTATGTGTACAAACCATG+AGG 0.692474 7_2:+72472674 Msa1074560:CDS
TATGTCCCCAAATTACCACA+GGG 0.750957 7_2:+72473117 Msa1074560:CDS
GTACATCGTTTGTGACCCTG+TGG 0.751188 7_2:-72473132 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAAAAAAAAACCTAAATTT+TGG - chr7_2:72471922-72471941 None:intergenic 15.0%
!! TTAAAAAAAATACTAATGCA+TGG + chr7_2:72472552-72472571 Msa1074560:intron 15.0%
!!! GAAAAAAAAAACCTAAATTT+TGG - chr7_2:72471922-72471941 None:intergenic 15.0%
!! TTAAAAAAAATACTAATGCA+TGG + chr7_2:72472552-72472571 Msa1074560:intron 15.0%
!! ATTGATGAGTAAAATTGATT+TGG + chr7_2:72472172-72472191 Msa1074560:intron 20.0%
!!! TTCATCTACAATCAATTTTT+AGG + chr7_2:72472270-72472289 Msa1074560:intron 20.0%
!! AATATTTGAAAACAGGAAAT+CGG - chr7_2:72472333-72472352 None:intergenic 20.0%
!! ATGTGAAAATATTTGAAAAC+AGG - chr7_2:72472340-72472359 None:intergenic 20.0%
!!! AATTGTTTTTTAGAAATCAG+AGG + chr7_2:72472427-72472446 Msa1074560:intron 20.0%
!!! TTAGTATTTTTTTTAACTCG+TGG - chr7_2:72472548-72472567 None:intergenic 20.0%
!! TATAACAATTCTTGTAAACA+TGG + chr7_2:72472729-72472748 Msa1074560:CDS 20.0%
!!! AATTTTTTGATGAATGCTTA+TGG + chr7_2:72472922-72472941 Msa1074560:CDS 20.0%
!! ATTGATGAGTAAAATTGATT+TGG + chr7_2:72472172-72472191 Msa1074560:intron 20.0%
!!! TTCATCTACAATCAATTTTT+AGG + chr7_2:72472270-72472289 Msa1074560:intron 20.0%
!! AATATTTGAAAACAGGAAAT+CGG - chr7_2:72472333-72472352 None:intergenic 20.0%
!! ATGTGAAAATATTTGAAAAC+AGG - chr7_2:72472340-72472359 None:intergenic 20.0%
!!! AATTGTTTTTTAGAAATCAG+AGG + chr7_2:72472427-72472446 Msa1074560:intron 20.0%
!!! TTAGTATTTTTTTTAACTCG+TGG - chr7_2:72472548-72472567 None:intergenic 20.0%
!! TATAACAATTCTTGTAAACA+TGG + chr7_2:72472729-72472748 Msa1074560:CDS 20.0%
!!! AATTTTTTGATGAATGCTTA+TGG + chr7_2:72472922-72472941 Msa1074560:CDS 20.0%
! GGTAAACTATTGTAATGAAA+AGG - chr7_2:72472009-72472028 None:intergenic 25.0%
! CTTATGGAATTGATAAGTTA+AGG + chr7_2:72472074-72472093 Msa1074560:intron 25.0%
!! AAACTTTGAAAACCGAAAAT+AGG + chr7_2:72472361-72472380 Msa1074560:intron 25.0%
!! CCATATTTTCAACCTATTTT+CGG - chr7_2:72472376-72472395 None:intergenic 25.0%
! TAGTATATTTCCTCATGATT+TGG + chr7_2:72472578-72472597 Msa1074560:intron 25.0%
! GTTTACAAGAATTGTTATAG+TGG - chr7_2:72472728-72472747 None:intergenic 25.0%
! CTAATCAACAAACAAATTGA+TGG - chr7_2:72472859-72472878 None:intergenic 25.0%
! GGTAAACTATTGTAATGAAA+AGG - chr7_2:72472009-72472028 None:intergenic 25.0%
! CTTATGGAATTGATAAGTTA+AGG + chr7_2:72472074-72472093 Msa1074560:intron 25.0%
!! AAACTTTGAAAACCGAAAAT+AGG + chr7_2:72472361-72472380 Msa1074560:intron 25.0%
!! CCATATTTTCAACCTATTTT+CGG - chr7_2:72472376-72472395 None:intergenic 25.0%
! TAGTATATTTCCTCATGATT+TGG + chr7_2:72472578-72472597 Msa1074560:intron 25.0%
! GTTTACAAGAATTGTTATAG+TGG - chr7_2:72472728-72472747 None:intergenic 25.0%
! CTAATCAACAAACAAATTGA+TGG - chr7_2:72472859-72472878 None:intergenic 25.0%
AATGTGATGGCTTCTTATAA+TGG - chr7_2:72471864-72471883 None:intergenic 30.0%
TAACCTTGAATGAAATGTGA+TGG - chr7_2:72471877-72471896 None:intergenic 30.0%
!!! AAACCTAAATTTTGGCCTTA+GGG - chr7_2:72471914-72471933 None:intergenic 30.0%
!! AAAACCTAAATTTTGGCCTT+AGG - chr7_2:72471915-72471934 None:intergenic 30.0%
! TTTTTCTTGCTTCATCACTA+AGG + chr7_2:72471936-72471955 Msa1074560:intron 30.0%
TTGTAATGAAAAGGCTCAAA+GGG - chr7_2:72472000-72472019 None:intergenic 30.0%
ATTGTAATGAAAAGGCTCAA+AGG - chr7_2:72472001-72472020 None:intergenic 30.0%
ATGGAATTGATAAGTTAAGG+AGG + chr7_2:72472077-72472096 Msa1074560:intron 30.0%
! CCGAAAATAGGTTGAAAATA+TGG + chr7_2:72472373-72472392 Msa1074560:intron 30.0%
GTGTAGCACTTTAATTGAAA+CGG + chr7_2:72472395-72472414 Msa1074560:intron 30.0%
TTCGAGTCGAGTTATATAAA+GGG - chr7_2:72472483-72472502 None:intergenic 30.0%
ATTCGAGTCGAGTTATATAA+AGG - chr7_2:72472484-72472503 None:intergenic 30.0%
AGGAACAGTGAAAACTATTA+TGG - chr7_2:72472612-72472631 None:intergenic 30.0%
CATCATAACAAACCAATTCA+AGG - chr7_2:72472632-72472651 None:intergenic 30.0%
!! AATTGGTTTGTTATGATGCA+GGG + chr7_2:72472634-72472653 Msa1074560:intron 30.0%
AAAATCCACTGCTAAAAAGA+TGG - chr7_2:72472792-72472811 None:intergenic 30.0%
!! CTTTTTAGCAGTGGATTTTT+TGG + chr7_2:72472793-72472812 Msa1074560:CDS 30.0%
!!! ACAATCTTCCTTTTGAAGTA+TGG + chr7_2:72472829-72472848 Msa1074560:CDS 30.0%
TGCATCAATTAGAAATCCTA+TGG - chr7_2:72472902-72472921 None:intergenic 30.0%
!!! CTTATGGAGATTTTTTGTCT+GGG + chr7_2:72472938-72472957 Msa1074560:CDS 30.0%
!!! TTATGGAGATTTTTTGTCTG+GGG + chr7_2:72472939-72472958 Msa1074560:CDS 30.0%
ACACAAAGTGTATTGGAAAA+AGG + chr7_2:72472967-72472986 Msa1074560:CDS 30.0%
CACAAAGTGTATTGGAAAAA+GGG + chr7_2:72472968-72472987 Msa1074560:CDS 30.0%
TCTATTACCAACAAAAGCTA+AGG - chr7_2:72472998-72473017 None:intergenic 30.0%
!!! CTAGGTTGGTTATTTTACAT+TGG - chr7_2:72473157-72473176 None:intergenic 30.0%
TAAAATAACCAACCTAGCTA+TGG + chr7_2:72473160-72473179 Msa1074560:exon 30.0%
!! TTAATTTTCTAGCCATAGCT+AGG - chr7_2:72473175-72473194 None:intergenic 30.0%
ATTGGGATTACACAGTATAT+TGG + chr7_2:72473253-72473272 Msa1074560:three_prime_UTR 30.0%
AATGTGATGGCTTCTTATAA+TGG - chr7_2:72471864-72471883 None:intergenic 30.0%
TAACCTTGAATGAAATGTGA+TGG - chr7_2:72471877-72471896 None:intergenic 30.0%
!!! AAACCTAAATTTTGGCCTTA+GGG - chr7_2:72471914-72471933 None:intergenic 30.0%
!! AAAACCTAAATTTTGGCCTT+AGG - chr7_2:72471915-72471934 None:intergenic 30.0%
! TTTTTCTTGCTTCATCACTA+AGG + chr7_2:72471936-72471955 Msa1074560:intron 30.0%
TTGTAATGAAAAGGCTCAAA+GGG - chr7_2:72472000-72472019 None:intergenic 30.0%
ATTGTAATGAAAAGGCTCAA+AGG - chr7_2:72472001-72472020 None:intergenic 30.0%
ATGGAATTGATAAGTTAAGG+AGG + chr7_2:72472077-72472096 Msa1074560:intron 30.0%
! CCGAAAATAGGTTGAAAATA+TGG + chr7_2:72472373-72472392 Msa1074560:intron 30.0%
GTGTAGCACTTTAATTGAAA+CGG + chr7_2:72472395-72472414 Msa1074560:intron 30.0%
TTCGAGTCGAGTTATATAAA+GGG - chr7_2:72472483-72472502 None:intergenic 30.0%
ATTCGAGTCGAGTTATATAA+AGG - chr7_2:72472484-72472503 None:intergenic 30.0%
AGGAACAGTGAAAACTATTA+TGG - chr7_2:72472612-72472631 None:intergenic 30.0%
CATCATAACAAACCAATTCA+AGG - chr7_2:72472632-72472651 None:intergenic 30.0%
!! AATTGGTTTGTTATGATGCA+GGG + chr7_2:72472634-72472653 Msa1074560:intron 30.0%
AAAATCCACTGCTAAAAAGA+TGG - chr7_2:72472792-72472811 None:intergenic 30.0%
!! CTTTTTAGCAGTGGATTTTT+TGG + chr7_2:72472793-72472812 Msa1074560:CDS 30.0%
!!! ACAATCTTCCTTTTGAAGTA+TGG + chr7_2:72472829-72472848 Msa1074560:CDS 30.0%
TGCATCAATTAGAAATCCTA+TGG - chr7_2:72472902-72472921 None:intergenic 30.0%
!!! CTTATGGAGATTTTTTGTCT+GGG + chr7_2:72472938-72472957 Msa1074560:CDS 30.0%
!!! TTATGGAGATTTTTTGTCTG+GGG + chr7_2:72472939-72472958 Msa1074560:CDS 30.0%
ACACAAAGTGTATTGGAAAA+AGG + chr7_2:72472967-72472986 Msa1074560:CDS 30.0%
CACAAAGTGTATTGGAAAAA+GGG + chr7_2:72472968-72472987 Msa1074560:CDS 30.0%
TCTATTACCAACAAAAGCTA+AGG - chr7_2:72472998-72473017 None:intergenic 30.0%
!!! CTAGGTTGGTTATTTTACAT+TGG - chr7_2:72473157-72473176 None:intergenic 30.0%
TAAAATAACCAACCTAGCTA+TGG + chr7_2:72473160-72473179 Msa1074560:exon 30.0%
!! TTAATTTTCTAGCCATAGCT+AGG - chr7_2:72473175-72473194 None:intergenic 30.0%
ATTGGGATTACACAGTATAT+TGG + chr7_2:72473253-72473272 Msa1074560:three_prime_UTR 30.0%
ACTCTTCTCATATAGTGCAA+TGG - chr7_2:72471841-72471860 None:intergenic 35.0%
AAGCCATCACATTTCATTCA+AGG + chr7_2:72471871-72471890 Msa1074560:CDS 35.0%
!!! AACCTAAATTTTGGCCTTAG+GGG - chr7_2:72471913-72471932 None:intergenic 35.0%
!! GATGGGAGAAGGTATTTATT+TGG + chr7_2:72471961-72471980 Msa1074560:CDS 35.0%
ATAAGTTAAGGAGGACTACT+TGG + chr7_2:72472086-72472105 Msa1074560:intron 35.0%
TAAGTTAAGGAGGACTACTT+GGG + chr7_2:72472087-72472106 Msa1074560:intron 35.0%
CTCCAAGTTAGAATCAACTT+GGG - chr7_2:72472234-72472253 None:intergenic 35.0%
! ATAACTCGACTCGAATTAGT+TGG + chr7_2:72472488-72472507 Msa1074560:intron 35.0%
! TAACTCGACTCGAATTAGTT+GGG + chr7_2:72472489-72472508 Msa1074560:intron 35.0%
!! GTGTTATTTCGAAGTCACAT+CGG - chr7_2:72472516-72472535 None:intergenic 35.0%
!!! TTTCCTCATGATTTGGCTTT+TGG + chr7_2:72472585-72472604 Msa1074560:intron 35.0%
! GTTTTCACTGTTCCTTGAAT+TGG + chr7_2:72472617-72472636 Msa1074560:intron 35.0%
!! GAATTGGTTTGTTATGATGC+AGG + chr7_2:72472633-72472652 Msa1074560:intron 35.0%
ATGGTGAACCATACTTCAAA+AGG - chr7_2:72472840-72472859 None:intergenic 35.0%
TAGTTTCTTATGCAGCTCAA+TGG + chr7_2:72472876-72472895 Msa1074560:CDS 35.0%
!!! GCTTATGGAGATTTTTTGTC+TGG + chr7_2:72472937-72472956 Msa1074560:CDS 35.0%
!!! TATGGAGATTTTTTGTCTGG+GGG + chr7_2:72472940-72472959 Msa1074560:CDS 35.0%
! TTGCTATTCCTTTGATGCTT+TGG + chr7_2:72473028-72473047 Msa1074560:CDS 35.0%
!!! ATTTTTAGCCTCCATAGCTT+TGG + chr7_2:72473071-72473090 Msa1074560:CDS 35.0%
CAACAAACAAACCAAAGCTA+TGG - chr7_2:72473085-72473104 None:intergenic 35.0%
AAGTGTTCCATGTGTGAATT+GGG + chr7_2:72473236-72473255 Msa1074560:three_prime_UTR 35.0%
! AGTATATTGGTGGTTGAAAG+TGG + chr7_2:72473266-72473285 Msa1074560:three_prime_UTR 35.0%
ACTCTTCTCATATAGTGCAA+TGG - chr7_2:72471841-72471860 None:intergenic 35.0%
AAGCCATCACATTTCATTCA+AGG + chr7_2:72471871-72471890 Msa1074560:CDS 35.0%
!!! AACCTAAATTTTGGCCTTAG+GGG - chr7_2:72471913-72471932 None:intergenic 35.0%
!! GATGGGAGAAGGTATTTATT+TGG + chr7_2:72471961-72471980 Msa1074560:CDS 35.0%
ATAAGTTAAGGAGGACTACT+TGG + chr7_2:72472086-72472105 Msa1074560:intron 35.0%
TAAGTTAAGGAGGACTACTT+GGG + chr7_2:72472087-72472106 Msa1074560:intron 35.0%
CTCCAAGTTAGAATCAACTT+GGG - chr7_2:72472234-72472253 None:intergenic 35.0%
! ATAACTCGACTCGAATTAGT+TGG + chr7_2:72472488-72472507 Msa1074560:intron 35.0%
! TAACTCGACTCGAATTAGTT+GGG + chr7_2:72472489-72472508 Msa1074560:intron 35.0%
!! GTGTTATTTCGAAGTCACAT+CGG - chr7_2:72472516-72472535 None:intergenic 35.0%
!!! TTTCCTCATGATTTGGCTTT+TGG + chr7_2:72472585-72472604 Msa1074560:intron 35.0%
! GTTTTCACTGTTCCTTGAAT+TGG + chr7_2:72472617-72472636 Msa1074560:intron 35.0%
!! GAATTGGTTTGTTATGATGC+AGG + chr7_2:72472633-72472652 Msa1074560:intron 35.0%
ATGGTGAACCATACTTCAAA+AGG - chr7_2:72472840-72472859 None:intergenic 35.0%
TAGTTTCTTATGCAGCTCAA+TGG + chr7_2:72472876-72472895 Msa1074560:CDS 35.0%
!!! GCTTATGGAGATTTTTTGTC+TGG + chr7_2:72472937-72472956 Msa1074560:CDS 35.0%
!!! TATGGAGATTTTTTGTCTGG+GGG + chr7_2:72472940-72472959 Msa1074560:CDS 35.0%
! TTGCTATTCCTTTGATGCTT+TGG + chr7_2:72473028-72473047 Msa1074560:CDS 35.0%
!!! ATTTTTAGCCTCCATAGCTT+TGG + chr7_2:72473071-72473090 Msa1074560:CDS 35.0%
CAACAAACAAACCAAAGCTA+TGG - chr7_2:72473085-72473104 None:intergenic 35.0%
AAGTGTTCCATGTGTGAATT+GGG + chr7_2:72473236-72473255 Msa1074560:three_prime_UTR 35.0%
! AGTATATTGGTGGTTGAAAG+TGG + chr7_2:72473266-72473285 Msa1074560:three_prime_UTR 35.0%
!!! TAAATTTTGGCCTTAGGGGT+TGG - chr7_2:72471909-72471928 None:intergenic 40.0%
AACCCCTAAGGCCAAAATTT+AGG + chr7_2:72471908-72471927 Msa1074560:CDS 40.0%
TGCTTCATCACTAAGGAAGA+TGG + chr7_2:72471943-72471962 Msa1074560:intron 40.0%
GCTTCATCACTAAGGAAGAT+GGG + chr7_2:72471944-72471963 Msa1074560:intron 40.0%
AAGGCTCAAAGGGACTAATA+TGG - chr7_2:72471990-72472009 None:intergenic 40.0%
AAACCTTCACGCACAACTTA+TGG + chr7_2:72472058-72472077 Msa1074560:intron 40.0%
ATTCCATAAGTTGTGCGTGA+AGG - chr7_2:72472064-72472083 None:intergenic 40.0%
AAGTTAAGGAGGACTACTTG+GGG + chr7_2:72472088-72472107 Msa1074560:intron 40.0%
TTGGGGTCTTAACGTAAATC+AGG + chr7_2:72472105-72472124 Msa1074560:intron 40.0%
!! CTCCCAAGTTGATTCTAACT+TGG + chr7_2:72472229-72472248 Msa1074560:intron 40.0%
GCTCCAAGTTAGAATCAACT+TGG - chr7_2:72472235-72472254 None:intergenic 40.0%
AAAGGGAAAATCCACGTCAT+GGG - chr7_2:72472466-72472485 None:intergenic 40.0%
TAAAGGGAAAATCCACGTCA+TGG - chr7_2:72472467-72472486 None:intergenic 40.0%
GATGCAGGGTGATGATAAAA+AGG + chr7_2:72472648-72472667 Msa1074560:intron 40.0%
TGCTATGTGTACAAACCATG+AGG + chr7_2:72472674-72472693 Msa1074560:CDS 40.0%
! TATAGTGGCTGTGAGTATTG+TGG - chr7_2:72472713-72472732 None:intergenic 40.0%
GGGTTACACACAAAGTGTAT+TGG + chr7_2:72472960-72472979 Msa1074560:CDS 40.0%
!! GGGTTTACCTTAGCTTTTGT+TGG + chr7_2:72472988-72473007 Msa1074560:CDS 40.0%
! TCCTTTGATGCTTTGGATGT+TGG + chr7_2:72473035-72473054 Msa1074560:CDS 40.0%
! CCTTTGATGCTTTGGATGTT+GGG + chr7_2:72473036-72473055 Msa1074560:CDS 40.0%
GAGGCTAAAAATACAAGCAC+TGG - chr7_2:72473063-72473082 None:intergenic 40.0%
CAAACAAACCAAAGCTATGG+AGG - chr7_2:72473082-72473101 None:intergenic 40.0%
TTATGTCCCCAAATTACCAC+AGG + chr7_2:72473116-72473135 Msa1074560:CDS 40.0%
TATGTCCCCAAATTACCACA+GGG + chr7_2:72473117-72473136 Msa1074560:CDS 40.0%
TTGTGACCCTGTGGTAATTT+GGG - chr7_2:72473126-72473145 None:intergenic 40.0%
TTTGTGACCCTGTGGTAATT+TGG - chr7_2:72473127-72473146 None:intergenic 40.0%
!! TTTTCTAGCCATAGCTAGGT+TGG - chr7_2:72473171-72473190 None:intergenic 40.0%
! GAAGTGTTCCATGTGTGAAT+TGG + chr7_2:72473235-72473254 Msa1074560:three_prime_UTR 40.0%
GTGTAATCCCAATTCACACA+TGG - chr7_2:72473246-72473265 None:intergenic 40.0%
GGGATTACACAGTATATTGG+TGG + chr7_2:72473256-72473275 Msa1074560:three_prime_UTR 40.0%
CAATGGAAAGCTAGCATAAC+TGG - chr7_2:72471824-72471843 None:intergenic 40.0%
!!! TAAATTTTGGCCTTAGGGGT+TGG - chr7_2:72471909-72471928 None:intergenic 40.0%
AACCCCTAAGGCCAAAATTT+AGG + chr7_2:72471908-72471927 Msa1074560:CDS 40.0%
TGCTTCATCACTAAGGAAGA+TGG + chr7_2:72471943-72471962 Msa1074560:intron 40.0%
GCTTCATCACTAAGGAAGAT+GGG + chr7_2:72471944-72471963 Msa1074560:intron 40.0%
AAGGCTCAAAGGGACTAATA+TGG - chr7_2:72471990-72472009 None:intergenic 40.0%
AAACCTTCACGCACAACTTA+TGG + chr7_2:72472058-72472077 Msa1074560:intron 40.0%
ATTCCATAAGTTGTGCGTGA+AGG - chr7_2:72472064-72472083 None:intergenic 40.0%
AAGTTAAGGAGGACTACTTG+GGG + chr7_2:72472088-72472107 Msa1074560:intron 40.0%
TTGGGGTCTTAACGTAAATC+AGG + chr7_2:72472105-72472124 Msa1074560:intron 40.0%
!! CTCCCAAGTTGATTCTAACT+TGG + chr7_2:72472229-72472248 Msa1074560:intron 40.0%
GCTCCAAGTTAGAATCAACT+TGG - chr7_2:72472235-72472254 None:intergenic 40.0%
AAAGGGAAAATCCACGTCAT+GGG - chr7_2:72472466-72472485 None:intergenic 40.0%
TAAAGGGAAAATCCACGTCA+TGG - chr7_2:72472467-72472486 None:intergenic 40.0%
GATGCAGGGTGATGATAAAA+AGG + chr7_2:72472648-72472667 Msa1074560:intron 40.0%
TGCTATGTGTACAAACCATG+AGG + chr7_2:72472674-72472693 Msa1074560:CDS 40.0%
! TATAGTGGCTGTGAGTATTG+TGG - chr7_2:72472713-72472732 None:intergenic 40.0%
GGGTTACACACAAAGTGTAT+TGG + chr7_2:72472960-72472979 Msa1074560:CDS 40.0%
!! GGGTTTACCTTAGCTTTTGT+TGG + chr7_2:72472988-72473007 Msa1074560:CDS 40.0%
! TCCTTTGATGCTTTGGATGT+TGG + chr7_2:72473035-72473054 Msa1074560:CDS 40.0%
! CCTTTGATGCTTTGGATGTT+GGG + chr7_2:72473036-72473055 Msa1074560:CDS 40.0%
GAGGCTAAAAATACAAGCAC+TGG - chr7_2:72473063-72473082 None:intergenic 40.0%
CAAACAAACCAAAGCTATGG+AGG - chr7_2:72473082-72473101 None:intergenic 40.0%
TTATGTCCCCAAATTACCAC+AGG + chr7_2:72473116-72473135 Msa1074560:CDS 40.0%
TATGTCCCCAAATTACCACA+GGG + chr7_2:72473117-72473136 Msa1074560:CDS 40.0%
TTGTGACCCTGTGGTAATTT+GGG - chr7_2:72473126-72473145 None:intergenic 40.0%
TTTGTGACCCTGTGGTAATT+TGG - chr7_2:72473127-72473146 None:intergenic 40.0%
!! TTTTCTAGCCATAGCTAGGT+TGG - chr7_2:72473171-72473190 None:intergenic 40.0%
! GAAGTGTTCCATGTGTGAAT+TGG + chr7_2:72473235-72473254 Msa1074560:three_prime_UTR 40.0%
GTGTAATCCCAATTCACACA+TGG - chr7_2:72473246-72473265 None:intergenic 40.0%
GGGATTACACAGTATATTGG+TGG + chr7_2:72473256-72473275 Msa1074560:three_prime_UTR 40.0%
TCACTAAGGAAGATGGGAGA+AGG + chr7_2:72471950-72471969 Msa1074560:intron 45.0%
TGGTGTAGCAGAGAAAAGCA+TGG - chr7_2:72472030-72472049 None:intergenic 45.0%
! GCGTGAAGGTTTGTTCTTGA+TGG - chr7_2:72472050-72472069 None:intergenic 45.0%
GGTCCAAAAGCCAAATCATG+AGG - chr7_2:72472591-72472610 None:intergenic 45.0%
!! GGTCATAAGAGTGTTCCTCA+TGG - chr7_2:72472692-72472711 None:intergenic 45.0%
!! GCAAGCCATCTTTTTAGCAG+TGG + chr7_2:72472784-72472803 Msa1074560:CDS 45.0%
TTATGCAGCTCAATGGCCAT+AGG + chr7_2:72472883-72472902 Msa1074560:CDS 45.0%
! CCCAACATCCAAAGCATCAA+AGG - chr7_2:72473039-72473058 None:intergenic 45.0%
TGTGACCCTGTGGTAATTTG+GGG - chr7_2:72473125-72473144 None:intergenic 45.0%
TCACTAAGGAAGATGGGAGA+AGG + chr7_2:72471950-72471969 Msa1074560:intron 45.0%
TGGTGTAGCAGAGAAAAGCA+TGG - chr7_2:72472030-72472049 None:intergenic 45.0%
! GCGTGAAGGTTTGTTCTTGA+TGG - chr7_2:72472050-72472069 None:intergenic 45.0%
GGTCCAAAAGCCAAATCATG+AGG - chr7_2:72472591-72472610 None:intergenic 45.0%
!! GGTCATAAGAGTGTTCCTCA+TGG - chr7_2:72472692-72472711 None:intergenic 45.0%
!! GCAAGCCATCTTTTTAGCAG+TGG + chr7_2:72472784-72472803 Msa1074560:CDS 45.0%
TTATGCAGCTCAATGGCCAT+AGG + chr7_2:72472883-72472902 Msa1074560:CDS 45.0%
! CCCAACATCCAAAGCATCAA+AGG - chr7_2:72473039-72473058 None:intergenic 45.0%
TGTGACCCTGTGGTAATTTG+GGG - chr7_2:72473125-72473144 None:intergenic 45.0%
ACCAACCAAACCAACCCCTA+AGG + chr7_2:72471896-72471915 Msa1074560:CDS 50.0%
!! TTTGGCCTTAGGGGTTGGTT+TGG - chr7_2:72471904-72471923 None:intergenic 50.0%
AAATCAGAGGCCCATGACAG+AGG + chr7_2:72472440-72472459 Msa1074560:intron 50.0%
GTACATCGTTTGTGACCCTG+TGG - chr7_2:72473135-72473154 None:intergenic 50.0%
ACCAACCAAACCAACCCCTA+AGG + chr7_2:72471896-72471915 Msa1074560:CDS 50.0%
!! TTTGGCCTTAGGGGTTGGTT+TGG - chr7_2:72471904-72471923 None:intergenic 50.0%
AAATCAGAGGCCCATGACAG+AGG + chr7_2:72472440-72472459 Msa1074560:intron 50.0%
GTACATCGTTTGTGACCCTG+TGG - chr7_2:72473135-72473154 None:intergenic 50.0%
!! GCCTTAGGGGTTGGTTTGGT+TGG - chr7_2:72471900-72471919 None:intergenic 55.0%
ACGTCATGGGCCTCTGTCAT+GGG - chr7_2:72472453-72472472 None:intergenic 55.0%
!! GCCTTAGGGGTTGGTTTGGT+TGG - chr7_2:72471900-72471919 None:intergenic 55.0%
ACGTCATGGGCCTCTGTCAT+GGG - chr7_2:72472453-72472472 None:intergenic 55.0%
CACGTCATGGGCCTCTGTCA+TGG - chr7_2:72472454-72472473 None:intergenic 60.0%
CATGACAGAGGCCCATGACG+TGG + chr7_2:72472452-72472471 Msa1074560:intron 60.0%
CACGTCATGGGCCTCTGTCA+TGG - chr7_2:72472454-72472473 None:intergenic 60.0%
CATGACAGAGGCCCATGACG+TGG + chr7_2:72472452-72472471 Msa1074560:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 72471824 72473297 72471824 ID=Msa1074560;Name=Msa1074560
chr7_2 mRNA 72471824 72473297 72471824 ID=Msa1074560-mRNA-1;Parent=Msa1074560;Name=Msa1074560-mRNA-1;_AED=0.13;_eAED=0.18;_QI=26|0|0.33|1|0|0.33|3|130|218
chr7_2 exon 72471824 72471929 72471824 ID=Msa1074560-mRNA-1:exon:16667;Parent=Msa1074560-mRNA-1
chr7_2 exon 72471958 72472021 72471958 ID=Msa1074560-mRNA-1:exon:16668;Parent=Msa1074560-mRNA-1
chr7_2 exon 72472655 72473297 72472655 ID=Msa1074560-mRNA-1:exon:16669;Parent=Msa1074560-mRNA-1
chr7_2 five_prime_UTR 72471824 72471849 72471824 ID=Msa1074560-mRNA-1:five_prime_utr;Parent=Msa1074560-mRNA-1
chr7_2 CDS 72471850 72471929 72471850 ID=Msa1074560-mRNA-1:cds;Parent=Msa1074560-mRNA-1
chr7_2 CDS 72471958 72472021 72471958 ID=Msa1074560-mRNA-1:cds;Parent=Msa1074560-mRNA-1
chr7_2 CDS 72472655 72473167 72472655 ID=Msa1074560-mRNA-1:cds;Parent=Msa1074560-mRNA-1
chr7_2 three_prime_UTR 72473168 72473297 72473168 ID=Msa1074560-mRNA-1:three_prime_utr;Parent=Msa1074560-mRNA-1
Gene Sequence

>Msa1074560

ATGAGAAGAGTCCATTATAAGAAGCCATCACATTTCATTCAAGGTTACCAACCAAACCAACCCCTAAGGCCAAAATTTAGGAAGATGGGAGAAGGTATTTATTTGGATACCATATTAGTCCCTTTGAGCCTTTTCATTACAATAGGTGATGATAAAAAGGCTATGCTATGTGTACAAACCATGAGGAACACTCTTATGACCACAATACTCACAGCCACTATAACAATTCTTGTAAACATGGCTTTAGCAGCTCTAAACAATAATGCATTCAATGCAAGCCATCTTTTTAGCAGTGGATTTTTTGGTTCAAAATCAGATACAATCTTCCTTTTGAAGTATGGTTCACCATCAATTTGTTTGTTGATTAGTTTCTTATGCAGCTCAATGGCCATAGGATTTCTAATTGATGCAAATTTTTTGATGAATGCTTATGGAGATTTTTTGTCTGGGGGTTACACACAAAGTGTATTGGAAAAAGGGTTTACCTTAGCTTTTGTTGGTAATAGAGTGTTTTGTCTTGCTATTCCTTTGATGCTTTGGATGTTGGGTCCAGTGCTTGTATTTTTAGCCTCCATAGCTTTGGTTTGTTTGTTGCATGAGTTTGATTATGTCCCCAAATTACCACAGGGTCACAAACGATGTACCAATGTAAAATAA

Protein sequence

>Msa1074560

MRRVHYKKPSHFIQGYQPNQPLRPKFRKMGEGIYLDTILVPLSLFITIGDDKKAMLCVQTMRNTLMTTILTATITILVNMALAALNNNAFNASHLFSSGFFGSKSDTIFLLKYGSPSICLLISFLCSSMAIGFLIDANFLMNAYGDFLSGGYTQSVLEKGFTLAFVGNRVFCLAIPLMLWMLGPVLVFLASIALVCLLHEFDYVPKLPQGHKRCTNVK*