AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0021240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0021240 MtrunA17_Chr1g0173181 96.402 528 5 2 1 528 1 514 0.0 1049
Msa0021240 MtrunA17_Chr5g0407541 52.050 317 146 3 85 395 54 370 2.22e-106 323
Msa0021240 MtrunA17_Chr3g0125821 35.484 93 58 1 436 528 83 173 8.57e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0021240 AT2G41680.1 78.368 527 106 5 5 527 6 528 0.0 850
Msa0021240 AT2G17420.1 52.244 312 143 3 85 390 61 372 2.35e-113 341
Msa0021240 AT2G17420.2 51.827 301 139 3 85 379 61 361 1.49e-107 325
Msa0021240 AT4G35460.1 51.603 312 145 3 85 390 53 364 1.87e-103 315

Find 157 sgRNAs with CRISPR-Local

Find 518 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGCTGCTTCTGCTATTTC+TGG 0.025232 1_1:-37581141 None:intergenic
TACCAAATGGGTGGTGTTCC+TGG 0.167134 1_1:+37574771 Msa0021240:CDS
TTCTTAACCTCTTCATGTTT+TGG 0.188984 1_1:-37579438 None:intergenic
TCAAAATTAATGTAAGAATT+TGG 0.196532 1_1:+37581873 Msa0021240:three_prime_UTR
CCTCTCAACAGTTGAGTATT+TGG 0.205655 1_1:-37577200 None:intergenic
TCACTGCTTTGGACAGTAAA+AGG 0.234446 1_1:-37575046 None:intergenic
TGAACTTGCTGAATTCAAAT+AGG 0.239962 1_1:-37581732 None:intergenic
GTTGAAAATGTGGTAATTAT+AGG 0.272616 1_1:+37574675 Msa0021240:CDS
TACCCAGAGAAGATGAATTT+TGG 0.278431 1_1:+37575509 Msa0021240:CDS
GAACACTACGGGTTTCAAAT+TGG 0.296172 1_1:-37574742 None:intergenic
GAACTTGCTGAATTCAAATA+GGG 0.312961 1_1:-37581731 None:intergenic
GGATTTCCAGACGGGATTAC+TGG 0.317096 1_1:+37574834 Msa0021240:CDS
ACTGAAGTAGAGAACTTTCC+AGG 0.334671 1_1:+37574813 Msa0021240:CDS
GCTCCAAAATTCATCTTCTC+TGG 0.339217 1_1:-37575512 None:intergenic
TCACCTTACGTTCACTGCTT+TGG 0.363162 1_1:-37575057 None:intergenic
AACTGCGGCGGGACAGAATC+TGG 0.366101 1_1:+37581962 Msa0021240:three_prime_UTR
GCCGTAACTGCTGCTGGATC+TGG 0.371625 1_1:+37578607 Msa0021240:CDS
CAAATTCTTGCTGTCGTTGG+AGG 0.382585 1_1:+37575589 Msa0021240:CDS
AACTACCAGCTTCTCGTTGA+AGG 0.393831 1_1:+37581754 Msa0021240:three_prime_UTR
CTTCTAAAGCCATGCAAGAT+AGG 0.400979 1_1:+37575698 Msa0021240:CDS
GCGACGGCAAGCTGAACGTT+GGG 0.406078 1_1:+37574973 Msa0021240:CDS
GATTACTGGACCTGATCTAA+TGG 0.408689 1_1:+37574848 Msa0021240:CDS
CATTACACTTACAAAGCATA+AGG 0.410956 1_1:+37579497 Msa0021240:CDS
TTGAAGTGCACAGTGACATT+TGG 0.412823 1_1:-37577050 None:intergenic
CCCCAGGAACACCACCCATT+TGG 0.425269 1_1:-37574773 None:intergenic
CGAAAATGCTGATCAGTTCA+AGG 0.425362 1_1:-37581640 None:intergenic
ACCAAATGGGTGGTGTTCCT+GGG 0.430236 1_1:+37574772 Msa0021240:CDS
TATTTGCCTCGATGAATTCT+CGG 0.433025 1_1:-37581512 None:intergenic
AGGCAAGCCGTAACTGCTGC+TGG 0.440096 1_1:+37578601 Msa0021240:CDS
TGGAGCATCACCTCTCTTCA+AGG 0.440116 1_1:+37575564 Msa0021240:CDS
AGAATGGTTACTGCGAAGAT+AGG 0.441679 1_1:+37573271 None:intergenic
TCCTCCTCCGTAGCCTCACC+AGG 0.445650 1_1:+37573487 Msa0021240:CDS
GTAATCCCGTCTGGAAATCC+TGG 0.459014 1_1:-37574831 None:intergenic
ATGAGAAGGTGAGGAGAGAG+AGG 0.459976 1_1:-37573350 None:intergenic
TAACATACCTTACTGAGGAT+TGG 0.461867 1_1:-37579755 None:intergenic
TTAGTAAGAAAGCTTGATAG+TGG 0.463519 1_1:+37577125 Msa0021240:CDS
CAGTGGCAATAATTACAGTA+TGG 0.463771 1_1:-37575462 None:intergenic
AGCAGAAGCAGCTGGAATCA+TGG 0.468143 1_1:+37581149 Msa0021240:CDS
AATGTGGTAATTATAGGTTC+AGG 0.468501 1_1:+37574681 Msa0021240:CDS
TGGCTTTAGAAGCCCTTAGT+TGG 0.469141 1_1:-37575687 None:intergenic
TCCAGATCCAGCAGCAGTTA+CGG 0.469420 1_1:-37578608 None:intergenic
CAAGTTGAACTTGACCAGTC+TGG 0.471614 1_1:+37577224 Msa0021240:CDS
CCAAATGGGTGGTGTTCCTG+GGG 0.472359 1_1:+37574773 Msa0021240:CDS
AGTGTTCGAGGGTTACCAAA+TGG 0.478208 1_1:+37574758 Msa0021240:CDS
ACAGTTGAGTATTTGGTGAA+TGG 0.478887 1_1:-37577193 None:intergenic
GTTGAAGGTGTATTTGCTGC+TGG 0.479454 1_1:+37577284 Msa0021240:CDS
GTGTTCGAGGGTTACCAAAT+GGG 0.480718 1_1:+37574759 Msa0021240:CDS
AAATTCTTGCTGTCGTTGGA+GGG 0.482006 1_1:+37575590 Msa0021240:CDS
TAGTAAGAAAGCTTGATAGT+GGG 0.482102 1_1:+37577126 Msa0021240:CDS
ATTACACTTACAAAGCATAA+GGG 0.483261 1_1:+37579498 Msa0021240:CDS
TATCTAGTTAACGTGAGATC+AGG 0.486126 1_1:-37581929 None:intergenic
TTGTACGTCGAGACCAACTA+AGG 0.488217 1_1:+37575674 Msa0021240:CDS
ATTCTTGCTGTCGTTGGAGG+GGG 0.488532 1_1:+37575592 Msa0021240:CDS
ATTTCACCTTGGATGATGAC+AGG 0.493423 1_1:-37581800 None:intergenic
TGGTAACCCTCGAACACTAC+GGG 0.495666 1_1:-37574753 None:intergenic
TAATACCTGTCCATTAGATC+AGG 0.500326 1_1:-37574858 None:intergenic
TTACGGCTTGCCTCCACTCA+TGG 0.500760 1_1:-37578591 None:intergenic
GGAGGAAGAAGTGTCGGAAG+AGG 0.501847 1_1:-37573470 None:intergenic
GGTCAAATTCTTGCTGTCGT+TGG 0.503789 1_1:+37575586 Msa0021240:CDS
CAGACTGGTCAAGTTCAACT+TGG 0.504331 1_1:-37577223 None:intergenic
TTTGAAACCCGTAGTGTTCG+AGG 0.508084 1_1:+37574746 Msa0021240:CDS
AATTGACAGCGCTATTCAGC+AGG 0.510453 1_1:-37581605 None:intergenic
TCAGGTCCAGTAATCCCGTC+TGG 0.510618 1_1:-37574840 None:intergenic
AGTAAGAAAGCTTGATAGTG+GGG 0.510964 1_1:+37577127 Msa0021240:CDS
GCAGAAGCAGCTGGAATCAT+GGG 0.511150 1_1:+37581150 Msa0021240:CDS
TGAGGAGAGAGAGGAAGCAG+TGG 0.512318 1_1:-37573341 None:intergenic
TGATGAACCTGGTGAGGCTA+CGG 0.513926 1_1:-37573494 None:intergenic
TATAATACACATATAAGCCT+TGG 0.515950 1_1:-37579695 None:intergenic
ACTTTCCAGGATTTCCAGAC+GGG 0.517680 1_1:+37574826 Msa0021240:CDS
AATTCTTGCTGTCGTTGGAG+GGG 0.520948 1_1:+37575591 Msa0021240:CDS
CTCCAAAATTCATCTTCTCT+GGG 0.522044 1_1:-37575511 None:intergenic
TTGGTAACCCTCGAACACTA+CGG 0.523238 1_1:-37574754 None:intergenic
ACCTGGTGAGGCTACGGAGG+AGG 0.524573 1_1:-37573488 None:intergenic
AATACAAAAGGACAGATGTC+TGG 0.526372 1_1:+37577098 Msa0021240:CDS
AAAACATGAAGAGGTTAAGA+AGG 0.526385 1_1:+37579440 Msa0021240:CDS
GAGCAACTGCAAAACGACTT+AGG 0.527739 1_1:+37575485 Msa0021240:CDS
ATATAAGCCTTGGACTATCA+TGG 0.534266 1_1:-37579685 None:intergenic
CATTGCCTTCAACGAGAAGC+TGG 0.535798 1_1:-37581759 None:intergenic
ACTGCGAAGATAGGACTCTT+CGG 0.537342 1_1:+37573280 Msa0021240:CDS
AAGAAGTGTCGGAAGAGGCT+CGG 0.538210 1_1:-37573465 None:intergenic
CCAGAAATAGCAGAAGCAGC+TGG 0.539369 1_1:+37581141 Msa0021240:CDS
ATTGAAGCCAATCCTCAGTA+AGG 0.540059 1_1:+37579748 Msa0021240:CDS
TCTTCTTATAGAGTTCCATC+AGG 0.540274 1_1:+37578675 Msa0021240:CDS
ATTATAGGTTCAGGTCCTGC+AGG 0.542012 1_1:+37574690 Msa0021240:CDS
GATATTGTGAGCAATACAAA+AGG 0.548161 1_1:+37577086 Msa0021240:CDS
TGTCCAAAGCAGTGAACGTA+AGG 0.549292 1_1:+37575054 Msa0021240:CDS
ATTGCTGCTGTGTATCCTGC+AGG 0.551544 1_1:-37574705 None:intergenic
TACGGAGGAGGAAGAAGTGT+CGG 0.554402 1_1:-37573476 None:intergenic
ATTTCCACTGTAACTGCGGC+GGG 0.555074 1_1:+37581951 Msa0021240:three_prime_UTR
ATTTGCTGCTGGAGATGTGC+AGG 0.558112 1_1:+37577295 Msa0021240:CDS
TTAAGAAGGAATTAACAGAC+AGG 0.558919 1_1:+37579454 Msa0021240:CDS
AGTGCTTGTGCAATTTGTGA+TGG 0.559766 1_1:+37575544 Msa0021240:CDS
TCGGACACACCTATCTTGCA+TGG 0.562404 1_1:-37575707 None:intergenic
AGTCAGTGCTTGAGGCCAAA+GGG 0.565727 1_1:+37577153 Msa0021240:CDS
GAGAGGAAGCAGTGGTGACA+CGG 0.566619 1_1:-37573333 None:intergenic
TATGCCGTAGAATAGCCCTT+TGG 0.566889 1_1:-37577168 None:intergenic
CAAAATTGAATCACAGAACT+CGG 0.566958 1_1:-37581569 None:intergenic
TGGGGAGGAGTCAGTGCTTG+AGG 0.568768 1_1:+37577145 Msa0021240:CDS
GAGGCCAAAGGGCTATTCTA+CGG 0.570443 1_1:+37577164 Msa0021240:CDS
AACTTTCCAGGATTTCCAGA+CGG 0.572369 1_1:+37574825 Msa0021240:CDS
CTGGACCTGATCTAATGGAC+AGG 0.572406 1_1:+37574853 Msa0021240:CDS
TGCGACGGCAAGCTGAACGT+TGG 0.574702 1_1:+37574972 Msa0021240:CDS
AGATGTTTCTACTGCAACAG+TGG 0.577210 1_1:+37581900 Msa0021240:three_prime_UTR
AAGAAAGCTTGATAGTGGGG+AGG 0.580489 1_1:+37577130 Msa0021240:CDS
TGACTAGTAAGTAGCCAGAC+TGG 0.583005 1_1:-37577238 None:intergenic
TTGAAACCCGTAGTGTTCGA+GGG 0.585198 1_1:+37574747 Msa0021240:CDS
ACTTACAAAGCATAAGGGGC+AGG 0.590481 1_1:+37579503 Msa0021240:CDS
GTAACAGCCAAAACATGAAG+AGG 0.591993 1_1:+37579431 Msa0021240:intron
GAGTCAGTGCTTGAGGCCAA+AGG 0.592233 1_1:+37577152 Msa0021240:CDS
GGTGACACGGTGGTTGTGAG+TGG 0.593710 1_1:-37573320 None:intergenic
GGAGCATCACCTCTCTTCAA+GGG 0.594248 1_1:+37575565 Msa0021240:CDS
GAAACGATGATGAGAAGGTG+AGG 0.595275 1_1:-37573359 None:intergenic
AATTGTACCATGATAGTCCA+AGG 0.599012 1_1:+37579678 Msa0021240:CDS
AACAGACAGGGATGTTCAAG+CGG 0.600644 1_1:+37579467 Msa0021240:CDS
CATACTGTAATTATTGCCAC+TGG 0.600711 1_1:+37575463 Msa0021240:CDS
AGAATTTGACCCTTGAAGAG+AGG 0.605923 1_1:-37575574 None:intergenic
TATGATCAGTCATTTCACCT+TGG 0.606394 1_1:-37581811 None:intergenic
TTCTTTAACATACCTTACTG+AGG 0.607014 1_1:-37579760 None:intergenic
TCTACTTGTCTAGGATGCGA+CGG 0.607303 1_1:+37574957 Msa0021240:intron
ACAGACAGGGATGTTCAAGC+GGG 0.607683 1_1:+37579468 Msa0021240:CDS
TGTTCTCATAGGACCATGAG+TGG 0.609661 1_1:+37578578 Msa0021240:intron
GTGACACGGTGGTTGTGAGT+GGG 0.610611 1_1:-37573319 None:intergenic
CTGTCCCGCCGCAGTTACAG+TGG 0.617990 1_1:-37581955 None:intergenic
GAGAGATATCTCGTCAGCAG+TGG 0.622694 1_1:+37578652 Msa0021240:CDS
AAGTAATGATGAACCTGGTG+AGG 0.625517 1_1:-37573500 None:intergenic
TTACACTTACAAAGCATAAG+GGG 0.626930 1_1:+37579499 Msa0021240:CDS
AGGTAACGCAGTTGAAAATG+TGG 0.629242 1_1:+37574665 Msa0021240:intron
TCACACCCTGTCATCATCCA+AGG 0.630893 1_1:+37581794 Msa0021240:three_prime_UTR
AAGATGAAACGATGATGAGA+AGG 0.634067 1_1:-37573364 None:intergenic
AGATATTTCCACTGTAACTG+CGG 0.634918 1_1:+37581947 Msa0021240:three_prime_UTR
ACACGGTGGTTGTGAGTGGG+AGG 0.635165 1_1:-37573316 None:intergenic
TGGCTACTTACTAGTCAAAG+AGG 0.637872 1_1:+37577244 Msa0021240:CDS
AACTTGCTGAATTCAAATAG+GGG 0.638356 1_1:-37581730 None:intergenic
CACCGACATGTGGTCCGTGT+CGG 0.640430 1_1:+37579723 Msa0021240:CDS
CCAAATACTCAACTGTTGAG+AGG 0.641648 1_1:+37577200 Msa0021240:CDS
TTTCACCTTGGATGATGACA+GGG 0.642361 1_1:-37581799 None:intergenic
CGACGGCAAGCTGAACGTTG+GGG 0.642828 1_1:+37574974 Msa0021240:CDS
TATTTCCACTGTAACTGCGG+CGG 0.644475 1_1:+37581950 Msa0021240:three_prime_UTR
GTTAACGTGAGATCAGGAAG+TGG 0.648420 1_1:-37581923 None:intergenic
TTCGAGGGTTACCAAATGGG+TGG 0.652902 1_1:+37574762 Msa0021240:CDS
AAGAACGAGAACGAAGAGAG+CGG 0.654263 1_1:-37573399 None:intergenic
GGCTACTTACTAGTCAAAGA+GGG 0.659261 1_1:+37577245 Msa0021240:CDS
AAAGGGCTATTCTACGGCAT+AGG 0.659759 1_1:+37577170 Msa0021240:CDS
GTCCGACACGGACCACATGT+CGG 0.665457 1_1:-37579725 None:intergenic
GCACTTCAATACAGAGACTG+TGG 0.669081 1_1:+37577064 Msa0021240:CDS
CAAATATAATGCTTCCTCTG+TGG 0.673525 1_1:-37575623 None:intergenic
CAAATGGGTGGTGTTCCTGG+GGG 0.675789 1_1:+37574774 Msa0021240:CDS
TGAACCTGGTGAGGCTACGG+AGG 0.676346 1_1:-37573491 None:intergenic
TTATACACGTCACCGACATG+TGG 0.678629 1_1:+37579713 Msa0021240:CDS
TGTACGTCGAGACCAACTAA+GGG 0.681720 1_1:+37575675 Msa0021240:CDS
TAAGAAGGAATTAACAGACA+GGG 0.686949 1_1:+37579455 Msa0021240:CDS
ATTGGCTTCAATGTCCGACA+CGG 0.691173 1_1:-37579737 None:intergenic
GCTTCTCGTTGAAGGCAATG+TGG 0.699182 1_1:+37581762 Msa0021240:three_prime_UTR
TCTCATAGGACCATGAGTGG+AGG 0.707926 1_1:+37578581 Msa0021240:intron
AGGAAGCAGTGGTGACACGG+TGG 0.735819 1_1:-37573330 None:intergenic
GAAGATAGGACTCTTCGGAG+TGG 0.740267 1_1:+37573285 Msa0021240:CDS
AGAATACCGAGAATTCATCG+AGG 0.782483 1_1:+37581506 Msa0021240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTACACATTAAAATAAAA+AGG - chr1_1:37576221-37576240 None:intergenic 10.0%
!! AAAAAATGTAAAATTAATAG+AGG + chr1_1:37578058-37578077 Msa0021240:intron 10.0%
!!! AAAATTGATGTTTTATAAAT+TGG + chr1_1:37578803-37578822 Msa0021240:intron 10.0%
!!! TATTTGATAATAAAGTTAAT+TGG + chr1_1:37578869-37578888 Msa0021240:intron 10.0%
!! ATAATATTCATTAAGATATA+TGG + chr1_1:37581258-37581277 Msa0021240:intron 10.0%
!! ATTGAAATTTAGTTATATTG+AGG + chr1_1:37573706-37573725 Msa0021240:intron 15.0%
!! TCATTAACTACAATAATTAA+GGG - chr1_1:37574150-37574169 None:intergenic 15.0%
!! AAGTTAAAATCTTGAAATTT+CGG - chr1_1:37575147-37575166 None:intergenic 15.0%
!!! ATTTTAACTTATAAACCAAT+TGG + chr1_1:37575157-37575176 Msa0021240:intron 15.0%
!! TGAATAATGAAAAAATATGA+AGG - chr1_1:37576071-37576090 None:intergenic 15.0%
!!! TTATGTCAATAATTTGTATT+TGG + chr1_1:37576295-37576314 Msa0021240:intron 15.0%
!! TACAACAAATATAATTAACT+TGG + chr1_1:37576322-37576341 Msa0021240:intron 15.0%
!! AAAAAAATTAACTGTTTAGT+TGG + chr1_1:37577459-37577478 Msa0021240:intron 15.0%
!!! TATAGTACATTATCTATTTT+AGG + chr1_1:37577744-37577763 Msa0021240:intron 15.0%
!! TTTGATTGAAAATTAATCAT+CGG - chr1_1:37577825-37577844 None:intergenic 15.0%
!! AATCAACAATAAATACTATA+AGG - chr1_1:37578034-37578053 None:intergenic 15.0%
!! AATATAAGTGCTTATAAAAT+TGG - chr1_1:37578720-37578739 None:intergenic 15.0%
!! AAAAACTTCATAAATTGTAT+AGG + chr1_1:37578835-37578854 Msa0021240:intron 15.0%
!! TCATTTAATGTTTGATTATT+TGG + chr1_1:37579594-37579613 Msa0021240:intron 15.0%
!!! TTTTTTAATAATCTGACTTA+AGG - chr1_1:37580493-37580512 None:intergenic 15.0%
!! AGTCAGATTATTAAAAAAAA+TGG + chr1_1:37580495-37580514 Msa0021240:intron 15.0%
!! TATATATGAGAATACATTAA+TGG + chr1_1:37580954-37580973 Msa0021240:intron 15.0%
!!! TTTTCTTTCAAAAAAATTCA+TGG + chr1_1:37581058-37581077 Msa0021240:intron 15.0%
!!! TTCAATTTTGTTTTCAATAT+TGG + chr1_1:37581582-37581601 Msa0021240:three_prime_UTR 15.0%
!! TCAAAATTAATGTAAGAATT+TGG + chr1_1:37581873-37581892 Msa0021240:three_prime_UTR 15.0%
!!! TGAAATTGATTACTTTTGTT+TGG + chr1_1:37573802-37573821 Msa0021240:intron 20.0%
!! AGTATTTCATAAGAATTGAA+TGG + chr1_1:37573864-37573883 Msa0021240:intron 20.0%
!! CTCATTAACTACAATAATTA+AGG - chr1_1:37574151-37574170 None:intergenic 20.0%
!! CTTAATTATTGTAGTTAATG+AGG + chr1_1:37574149-37574168 Msa0021240:intron 20.0%
!!! ATTATTATTGGTTGTATGTT+TGG - chr1_1:37574235-37574254 None:intergenic 20.0%
!!! AAATGTGACATTTTTTTAGA+CGG - chr1_1:37574267-37574286 None:intergenic 20.0%
!!! TATCAAAATAATTGTCACTT+TGG + chr1_1:37574301-37574320 Msa0021240:intron 20.0%
!! TCTATCTATATTTCAATAAG+AGG - chr1_1:37574490-37574509 None:intergenic 20.0%
!! AGTTAAAATCTTGAAATTTC+GGG - chr1_1:37575146-37575165 None:intergenic 20.0%
!!! ATCTTCTTTGTGATATTTTA+TGG + chr1_1:37575188-37575207 Msa0021240:intron 20.0%
!!! ATTTGATAGTCAGTTTTATT+TGG + chr1_1:37575236-37575255 Msa0021240:intron 20.0%
!! TGTATATAAATCAAAAGTGA+TGG - chr1_1:37575338-37575357 None:intergenic 20.0%
!! CTTACAATTATAGATTGTAA+AGG - chr1_1:37575858-37575877 None:intergenic 20.0%
!!! TAGTTAGATCAATCTTTTAA+AGG + chr1_1:37576021-37576040 Msa0021240:intron 20.0%
!! AAAAAATGAAGCAAAAACAA+AGG - chr1_1:37576179-37576198 None:intergenic 20.0%
!! TTAATGTGTAATACATTTGA+TGG + chr1_1:37576228-37576247 Msa0021240:intron 20.0%
!! TAATGTGTAATACATTTGAT+GGG + chr1_1:37576229-37576248 Msa0021240:intron 20.0%
!!! TTTCTATTAACTGATTTGTT+AGG + chr1_1:37576264-37576283 Msa0021240:intron 20.0%
!! ATCAAACACATTATGTTATT+AGG - chr1_1:37576556-37576575 None:intergenic 20.0%
!! ATGTTATGTGATTATATATC+TGG + chr1_1:37576701-37576720 Msa0021240:intron 20.0%
!!! TAAAATTTTAGGTTAGCAAA+AGG + chr1_1:37576839-37576858 Msa0021240:intron 20.0%
!!! AAAATTTTAGGTTAGCAAAA+GGG + chr1_1:37576840-37576859 Msa0021240:intron 20.0%
!! TCTTGTAAAACAATTGATAA+CGG - chr1_1:37577537-37577556 None:intergenic 20.0%
!! ATTGTAGAATTGAAATTAGA+AGG - chr1_1:37577613-37577632 None:intergenic 20.0%
!!! GATATTATTCTAGAATATCT+TGG + chr1_1:37577792-37577811 Msa0021240:intron 20.0%
!! TGTATATTAGATTAATTCGT+AGG + chr1_1:37577846-37577865 Msa0021240:intron 20.0%
!! ATGCAATTAAAAATTCAAAG+AGG + chr1_1:37578108-37578127 Msa0021240:intron 20.0%
!! TGCAATTAAAAATTCAAAGA+GGG + chr1_1:37578109-37578128 Msa0021240:intron 20.0%
!! AGTCTATTTATCCTTAAATA+GGG + chr1_1:37578225-37578244 Msa0021240:intron 20.0%
!! ATTATATTGATCCCTATTTA+AGG - chr1_1:37578239-37578258 None:intergenic 20.0%
!! TTATCCTTATAATGTAGTTA+AGG + chr1_1:37578263-37578282 Msa0021240:intron 20.0%
!! TAATCCTTAACTACATTATA+AGG - chr1_1:37578270-37578289 None:intergenic 20.0%
!! CTTAACATTTAATGTTCTTA+AGG + chr1_1:37578367-37578386 Msa0021240:intron 20.0%
!! ATCAAAAGTGAACATATTTA+AGG - chr1_1:37578466-37578485 None:intergenic 20.0%
!!! TATCACTTTTTCATACAAAA+AGG - chr1_1:37578524-37578543 None:intergenic 20.0%
!!! CTTATAAGCTTTTAAGTTAT+TGG + chr1_1:37579297-37579316 Msa0021240:intron 20.0%
!! AATGTTAGCAAAATAATAAC+AGG + chr1_1:37579342-37579361 Msa0021240:intron 20.0%
!! CAAACATTAAATGAACTAAT+TGG - chr1_1:37579588-37579607 None:intergenic 20.0%
!!! TCAATTTTCAAAAAGAAACA+AGG - chr1_1:37579940-37579959 None:intergenic 20.0%
!!! TTCTATCATAAACCATATTT+TGG + chr1_1:37580287-37580306 Msa0021240:intron 20.0%
!! GTAAAAACTTATTAATGAGT+TGG - chr1_1:37580314-37580333 None:intergenic 20.0%
!!! TTTTGTTGAAATTGATATAG+AGG + chr1_1:37581113-37581132 Msa0021240:CDS 20.0%
!! ACAGTTAAAGTTTATATCTT+GGG - chr1_1:37581313-37581332 None:intergenic 20.0%
!! AACAGTTAAAGTTTATATCT+TGG - chr1_1:37581314-37581333 None:intergenic 20.0%
!! AAGTACATAAAAACATTCAA+GGG + chr1_1:37581540-37581559 Msa0021240:three_prime_UTR 20.0%
!!! GAAATTTTGATGTTAAGTGT+CGG + chr1_1:37573630-37573649 Msa0021240:intron 25.0%
!! AGAGTTAATTGTGGTAATTT+TGG + chr1_1:37573730-37573749 Msa0021240:intron 25.0%
! ATTTCATAAGAATTGAATGG+AGG + chr1_1:37573867-37573886 Msa0021240:intron 25.0%
! TTTCATAAGAATTGAATGGA+GGG + chr1_1:37573868-37573887 Msa0021240:intron 25.0%
! TCGAGAATAAGTACTTAAAA+TGG + chr1_1:37573964-37573983 Msa0021240:intron 25.0%
! ATAATTTACGGCTTAAATGT+CGG - chr1_1:37574008-37574027 None:intergenic 25.0%
!!! AATGTGACATTTTTTTAGAC+GGG - chr1_1:37574266-37574285 None:intergenic 25.0%
!!! GTGACAATTATTTTGATACA+TGG - chr1_1:37574299-37574318 None:intergenic 25.0%
! TCCTGTTTATAAGAGAAAAT+TGG + chr1_1:37574356-37574375 Msa0021240:intron 25.0%
! CCTGTTTATAAGAGAAAATT+GGG + chr1_1:37574357-37574376 Msa0021240:intron 25.0%
!! AACATACAAGCCAATAATTT+TGG - chr1_1:37574534-37574553 None:intergenic 25.0%
! GTTGAAAATGTGGTAATTAT+AGG + chr1_1:37574675-37574694 Msa0021240:CDS 25.0%
! GTTAAAATCTTGAAATTTCG+GGG - chr1_1:37575145-37575164 None:intergenic 25.0%
! AATATCACAAAGAAGATTCA+AGG - chr1_1:37575185-37575204 None:intergenic 25.0%
! AAACAATAATATCCAATTCG+TGG + chr1_1:37575380-37575399 Msa0021240:intron 25.0%
! CAATTATAGATTGTAAAGGT+AGG - chr1_1:37575854-37575873 None:intergenic 25.0%
!! TTAAAACTCTAATTTTCCAG+AGG - chr1_1:37575994-37576013 None:intergenic 25.0%
! TATAAGCTCAAGTAAACATA+AGG - chr1_1:37576129-37576148 None:intergenic 25.0%
! AACAAACACATACTTAATCT+AGG - chr1_1:37576357-37576376 None:intergenic 25.0%
! TTCTCTATTATCAATTCTCA+AGG - chr1_1:37576415-37576434 None:intergenic 25.0%
! ATAGAGAAGCTAAAAATTGT+AGG + chr1_1:37576427-37576446 Msa0021240:intron 25.0%
! TGTCTAAATTGTCATTCAAT+AGG + chr1_1:37576665-37576684 Msa0021240:intron 25.0%
! GTCTAAATTGTCATTCAATA+GGG + chr1_1:37576666-37576685 Msa0021240:intron 25.0%
! AAGTCTATGTTTGAAAGAAT+AGG + chr1_1:37577362-37577381 Msa0021240:intron 25.0%
!! GTTTTACAAGAAAAATAGAG+AGG + chr1_1:37577546-37577565 Msa0021240:intron 25.0%
! ATAAACTAATTCTCTCTTGA+AGG - chr1_1:37578006-37578025 None:intergenic 25.0%
!! AAGGGTCAATTTTTATTAAG+AGG + chr1_1:37578141-37578160 Msa0021240:intron 25.0%
!! AGGGTCAATTTTTATTAAGA+GGG + chr1_1:37578142-37578161 Msa0021240:intron 25.0%
! GAGTCTATTTATCCTTAAAT+AGG + chr1_1:37578224-37578243 Msa0021240:intron 25.0%
! AATTTGTGTATTCAATGCAT+TGG - chr1_1:37578337-37578356 None:intergenic 25.0%
! GATTTGATATAGAAGACTAA+GGG - chr1_1:37578421-37578440 None:intergenic 25.0%
!! GAACATATTTAAGGTGAAAA+GGG - chr1_1:37578457-37578476 None:intergenic 25.0%
!! TGAACATATTTAAGGTGAAA+AGG - chr1_1:37578458-37578477 None:intergenic 25.0%
! GAAGAAATAACCTTAACATA+GGG - chr1_1:37578557-37578576 None:intergenic 25.0%
! AGAAGAAATAACCTTAACAT+AGG - chr1_1:37578558-37578577 None:intergenic 25.0%
!! TTATTTCTTCTTGTTCTCAT+AGG + chr1_1:37578567-37578586 Msa0021240:intron 25.0%
! TACGATGCTATATAATATAC+AGG - chr1_1:37578746-37578765 None:intergenic 25.0%
!! TAAGTTCCTCAAAATTTTGT+TGG + chr1_1:37578904-37578923 Msa0021240:intron 25.0%
! CATATTATCTATTGCTCTTT+AGG + chr1_1:37579174-37579193 Msa0021240:intron 25.0%
!! ATCAGAATCTTTTCAAAGAA+AGG + chr1_1:37579198-37579217 Msa0021240:intron 25.0%
! CTTAAAAGCTTATAAGCATA+TGG - chr1_1:37579293-37579312 None:intergenic 25.0%
!!! ATAAGCTTTTAAGTTATTGG+CGG + chr1_1:37579300-37579319 Msa0021240:intron 25.0%
! ATTACACTTACAAAGCATAA+GGG + chr1_1:37579498-37579517 Msa0021240:CDS 25.0%
! TATAATACACATATAAGCCT+TGG - chr1_1:37579698-37579717 None:intergenic 25.0%
! TAAGGTATGTTAAAGAACAA+TGG + chr1_1:37579766-37579785 Msa0021240:intron 25.0%
! GAATTAATTAATGTGGCATA+CGG - chr1_1:37580049-37580068 None:intergenic 25.0%
! ATGCCACATTAATTAATTCT+TGG + chr1_1:37580050-37580069 Msa0021240:intron 25.0%
! TGCCACATTAATTAATTCTT+GGG + chr1_1:37580051-37580070 Msa0021240:intron 25.0%
! TTCCCAAGAATTAATTAATG+TGG - chr1_1:37580056-37580075 None:intergenic 25.0%
!! AATATTTGCATTTTGCTTGA+AGG - chr1_1:37580151-37580170 None:intergenic 25.0%
! GCAAAATGCAAATATTCTAA+TGG + chr1_1:37580155-37580174 Msa0021240:intron 25.0%
! TGGTTTATGATAGAACATTA+TGG - chr1_1:37580282-37580301 None:intergenic 25.0%
!!! GTTTCTCTTTTAGTTTTTCT+AGG + chr1_1:37580339-37580358 Msa0021240:intron 25.0%
! TATAGAGATTGTTCATTCTA+AGG - chr1_1:37580624-37580643 None:intergenic 25.0%
! AGAACCAAATCAATTTCTAT+TGG + chr1_1:37580662-37580681 Msa0021240:intron 25.0%
!! TCTATAATCTCATTTTCATC+CGG - chr1_1:37580717-37580736 None:intergenic 25.0%
! TATTAATTTCTGTTCTCTGA+AGG - chr1_1:37580770-37580789 None:intergenic 25.0%
! AGTTAAAGTTTATATCTTGG+GGG - chr1_1:37581311-37581330 None:intergenic 25.0%
! CAGTTAAAGTTTATATCTTG+GGG - chr1_1:37581312-37581331 None:intergenic 25.0%
! TTGTTAGTTACTACAATGAT+AGG - chr1_1:37581341-37581360 None:intergenic 25.0%
!! AATCTGTTTAGAACAAAAGA+TGG - chr1_1:37581383-37581402 None:intergenic 25.0%
! GAAGTACATAAAAACATTCA+AGG + chr1_1:37581539-37581558 Msa0021240:exon 25.0%
!!! AAGGTTACGATGCATTTTTT+TGG + chr1_1:37573660-37573679 Msa0021240:intron 30.0%
!!! GCATTTTTTTGGTCTGTTAT+TGG + chr1_1:37573671-37573690 Msa0021240:intron 30.0%
TATTGAGGAAGAGTTAATTG+TGG + chr1_1:37573721-37573740 Msa0021240:intron 30.0%
TAATTTACGGCTTAAATGTC+GGG - chr1_1:37574007-37574026 None:intergenic 30.0%
TAGTTGGCTAGCATAATTTA+CGG - chr1_1:37574020-37574039 None:intergenic 30.0%
ATGTGACATTTAATCTGAGA+CGG - chr1_1:37574049-37574068 None:intergenic 30.0%
! ATTGCTATCAATCCTAGTTT+TGG + chr1_1:37574194-37574213 Msa0021240:intron 30.0%
! AATTTTCCTAGACCAAAACT+AGG - chr1_1:37574209-37574228 None:intergenic 30.0%
! CGGGTTGTTGTTATTATTAT+TGG - chr1_1:37574247-37574266 None:intergenic 30.0%
TCAACATTTATTACTACCTC+CGG + chr1_1:37574333-37574352 Msa0021240:intron 30.0%
! TTTTCTCTTATAAACAGGAC+CGG - chr1_1:37574355-37574374 None:intergenic 30.0%
! CCCAATTTTCTCTTATAAAC+AGG - chr1_1:37574360-37574379 None:intergenic 30.0%
TCAGTGAGAACCAAAATTAT+TGG + chr1_1:37574521-37574540 Msa0021240:intron 30.0%
AATGTGGTAATTATAGGTTC+AGG + chr1_1:37574681-37574700 Msa0021240:CDS 30.0%
GAACTTGCATAAATAAACCT+TGG + chr1_1:37574921-37574940 Msa0021240:intron 30.0%
TAGAAAATTTGTGAACTCCA+AGG - chr1_1:37574941-37574960 None:intergenic 30.0%
! CACAAATTTTCTACTTGTCT+AGG + chr1_1:37574948-37574967 Msa0021240:intron 30.0%
CAAATGATTCATCATATGGT+CGG - chr1_1:37575315-37575334 None:intergenic 30.0%
ATGGCAAATGATTCATCATA+TGG - chr1_1:37575319-37575338 None:intergenic 30.0%
AATATCCAATTCGTGGTATA+TGG + chr1_1:37575387-37575406 Msa0021240:intron 30.0%
ATATCCAATTCGTGGTATAT+GGG + chr1_1:37575388-37575407 Msa0021240:intron 30.0%
! ACCTTTTCTTGATTACATTC+AGG + chr1_1:37575432-37575451 Msa0021240:intron 30.0%
ACCTGAATGTAATCAAGAAA+AGG - chr1_1:37575436-37575455 None:intergenic 30.0%
GAGAGTTGGGAAATATTAAT+CGG - chr1_1:37575729-37575748 None:intergenic 30.0%
AGAGAGTGGATAAACTAAAA+GGG - chr1_1:37575924-37575943 None:intergenic 30.0%
AACATAAGGTGTAAACTGAA+AGG - chr1_1:37576115-37576134 None:intergenic 30.0%
!!! CTTTGTAATTTGGCTTTTAG+TGG + chr1_1:37576510-37576529 Msa0021240:intron 30.0%
ATCATAATTCTCTTCTCACA+TGG + chr1_1:37576574-37576593 Msa0021240:intron 30.0%
TCATAATTCTCTTCTCACAT+GGG + chr1_1:37576575-37576594 Msa0021240:intron 30.0%
!!! TTTTGCAAGCACACTTTTTT+GGG - chr1_1:37576629-37576648 None:intergenic 30.0%
!! ATTTTGCAAGCACACTTTTT+TGG - chr1_1:37576630-37576649 None:intergenic 30.0%
! ACTACCAGCTGTAAAATTTT+AGG + chr1_1:37576828-37576847 Msa0021240:intron 30.0%
! CTAACCTAAAATTTTACAGC+TGG - chr1_1:37576835-37576854 None:intergenic 30.0%
CTATTTCGACTTCTTTATGA+AGG + chr1_1:37576929-37576948 Msa0021240:intron 30.0%
AACCTGTTAAACAAACATTC+AGG - chr1_1:37576998-37577017 None:intergenic 30.0%
GATATTGTGAGCAATACAAA+AGG + chr1_1:37577086-37577105 Msa0021240:CDS 30.0%
TTAGTAAGAAAGCTTGATAG+TGG + chr1_1:37577125-37577144 Msa0021240:CDS 30.0%
! TAGTAAGAAAGCTTGATAGT+GGG + chr1_1:37577126-37577145 Msa0021240:CDS 30.0%
! TAAGTAGCTATAAGCCTTTT+AGG + chr1_1:37577499-37577518 Msa0021240:intron 30.0%
! AAGTAGCTATAAGCCTTTTA+GGG + chr1_1:37577500-37577519 Msa0021240:intron 30.0%
CAAGATTGAACATAGATCAA+TGG - chr1_1:37577637-37577656 None:intergenic 30.0%
TGTAGTAATGACAAGAGATA+TGG - chr1_1:37577880-37577899 None:intergenic 30.0%
ACTACATTTGTCCCTAAATA+TGG + chr1_1:37577894-37577913 Msa0021240:intron 30.0%
CTACATTTGTCCCTAAATAT+GGG + chr1_1:37577895-37577914 Msa0021240:intron 30.0%
ATCACGAGAATTAAGAATGT+TGG + chr1_1:37577932-37577951 Msa0021240:intron 30.0%
! ATTAAGAGGGTCTTGTATTT+AGG + chr1_1:37578155-37578174 Msa0021240:intron 30.0%
! TTAAGAGGGTCTTGTATTTA+GGG + chr1_1:37578156-37578175 Msa0021240:intron 30.0%
CCTAAATAAGTAGGGAATTT+AGG - chr1_1:37578201-37578220 None:intergenic 30.0%
CCTAAATTCCCTACTTATTT+AGG + chr1_1:37578198-37578217 Msa0021240:intron 30.0%
GACTCAATCCTAAATAAGTA+GGG - chr1_1:37578209-37578228 None:intergenic 30.0%
AGACTCAATCCTAAATAAGT+AGG - chr1_1:37578210-37578229 None:intergenic 30.0%
CGATTTGATATAGAAGACTA+AGG - chr1_1:37578422-37578441 None:intergenic 30.0%
CTTTGAACTAAAATACCTGA+TGG - chr1_1:37578693-37578712 None:intergenic 30.0%
!!! AAAATTTTGTTGGTGGCTAA+TGG + chr1_1:37578914-37578933 Msa0021240:intron 30.0%
TAATGGTAAGTAGTTATCAG+TGG + chr1_1:37578931-37578950 Msa0021240:intron 30.0%
! CATAATTTGATGACACAATG+AGG + chr1_1:37579010-37579029 Msa0021240:intron 30.0%
! TATAATTTGTCCTCACGTAA+AGG - chr1_1:37579101-37579120 None:intergenic 30.0%
TTACGTGAGGACAAATTATA+AGG + chr1_1:37579101-37579120 Msa0021240:intron 30.0%
TTGAAATAACTAAGTGTAGC+AGG - chr1_1:37579136-37579155 None:intergenic 30.0%
GTTACAAGAAACAAATTGGA+AGG - chr1_1:37579416-37579435 None:intergenic 30.0%
! TTCTTAACCTCTTCATGTTT+TGG - chr1_1:37579441-37579460 None:intergenic 30.0%
AAAACATGAAGAGGTTAAGA+AGG + chr1_1:37579440-37579459 Msa0021240:CDS 30.0%
TTAAGAAGGAATTAACAGAC+AGG + chr1_1:37579454-37579473 Msa0021240:CDS 30.0%
TAAGAAGGAATTAACAGACA+GGG + chr1_1:37579455-37579474 Msa0021240:CDS 30.0%
CATTACACTTACAAAGCATA+AGG + chr1_1:37579497-37579516 Msa0021240:CDS 30.0%
TTACACTTACAAAGCATAAG+GGG + chr1_1:37579499-37579518 Msa0021240:CDS 30.0%
ATTAGCATAAGCACCTAATA+AGG - chr1_1:37579537-37579556 None:intergenic 30.0%
TGCTAATGAGAATAAAGTCT+TGG + chr1_1:37579550-37579569 Msa0021240:intron 30.0%
TTCTTTAACATACCTTACTG+AGG - chr1_1:37579763-37579782 None:intergenic 30.0%
GTTAGATATCATAGTACTCA+TGG + chr1_1:37579815-37579834 Msa0021240:intron 30.0%
ATGATACATGAGTTCTTTCA+AGG + chr1_1:37579861-37579880 Msa0021240:intron 30.0%
! GACAATTGTCTTTTGTTAGA+TGG + chr1_1:37579899-37579918 Msa0021240:intron 30.0%
! AATTGTCTTTTGTTAGATGG+TGG + chr1_1:37579902-37579921 Msa0021240:intron 30.0%
! TAATGAGTTGGACCAAAATA+TGG - chr1_1:37580302-37580321 None:intergenic 30.0%
!! TAGAAAAGATGGTGGAAAAT+AGG - chr1_1:37580427-37580446 None:intergenic 30.0%
ACGTCCAATAGAAATTGATT+TGG - chr1_1:37580669-37580688 None:intergenic 30.0%
! CTATAATCTCATTTTCATCC+GGG - chr1_1:37580716-37580735 None:intergenic 30.0%
GGATGAAAATGAGATTATAG+AGG + chr1_1:37580716-37580735 Msa0021240:intron 30.0%
TAGAGAAGATGATTATTCCT+TGG - chr1_1:37580860-37580879 None:intergenic 30.0%
ATTTCAAATCTCGATCATGA+AGG - chr1_1:37580888-37580907 None:intergenic 30.0%
TGGTTATATTATGCATGACA+TGG + chr1_1:37580974-37580993 Msa0021240:intron 30.0%
TTTGTCAATACCATCAAACA+AGG - chr1_1:37581025-37581044 None:intergenic 30.0%
CTTTCAAAAAAATTCATGGC+AGG + chr1_1:37581062-37581081 Msa0021240:intron 30.0%
!! TTTTTAAAGAACTGCACACA+CGG - chr1_1:37581180-37581199 None:intergenic 30.0%
! TGTGCAGTTCTTTAAAAACA+AGG + chr1_1:37581182-37581201 Msa0021240:CDS 30.0%
! TTGTTCTAAACAGATTTGAG+AGG + chr1_1:37581387-37581406 Msa0021240:intron 30.0%
!!! TGATTTTGCATTGATTTTGC+AGG + chr1_1:37581457-37581476 Msa0021240:intron 30.0%
CAAAATTGAATCACAGAACT+CGG - chr1_1:37581572-37581591 None:intergenic 30.0%
!! AACTTGCTGAATTCAAATAG+GGG - chr1_1:37581733-37581752 None:intergenic 30.0%
!! GAACTTGCTGAATTCAAATA+GGG - chr1_1:37581734-37581753 None:intergenic 30.0%
!! TGAACTTGCTGAATTCAAAT+AGG - chr1_1:37581735-37581754 None:intergenic 30.0%
AAGATGAAACGATGATGAGA+AGG - chr1_1:37573367-37573386 None:intergenic 35.0%
CAAATTCGCACTAGTGTTAT+AGG + chr1_1:37573553-37573572 Msa0021240:intron 35.0%
AGGGTAGTTGTTAAAGGATT+TGG + chr1_1:37573887-37573906 Msa0021240:intron 35.0%
GTTGTTAAAGGATTTGGAGA+TGG + chr1_1:37573893-37573912 Msa0021240:intron 35.0%
! TGTCACATTTGAGTTATGCA+CGG + chr1_1:37574061-37574080 Msa0021240:intron 35.0%
TGAGTTATGCACGGTTATTA+AGG + chr1_1:37574070-37574089 Msa0021240:intron 35.0%
!!! ATCAATCCTAGTTTTGGTCT+AGG + chr1_1:37574200-37574219 Msa0021240:intron 35.0%
!! TCAACCAAAGTTGATGTATC+TGG - chr1_1:37574416-37574435 None:intergenic 35.0%
! CCGTTTTATAGGAGAAACTT+GGG - chr1_1:37574439-37574458 None:intergenic 35.0%
CCCAAGTTTCTCCTATAAAA+CGG + chr1_1:37574436-37574455 Msa0021240:intron 35.0%
! ACCGTTTTATAGGAGAAACT+TGG - chr1_1:37574440-37574459 None:intergenic 35.0%
TTAAAAACACTATACTCCCC+CGG - chr1_1:37574463-37574482 None:intergenic 35.0%
! TTGGTTCTCACTGAGTAATA+AGG - chr1_1:37574515-37574534 None:intergenic 35.0%
!!! TGACAGTTTTTTCTTCTCAC+AGG + chr1_1:37574645-37574664 Msa0021240:intron 35.0%
TAATACCTGTCCATTAGATC+AGG - chr1_1:37574861-37574880 None:intergenic 35.0%
AGAAGATTCAAGGAACCAAT+TGG - chr1_1:37575175-37575194 None:intergenic 35.0%
! CGGTAGTTTTTATGACATTC+AGG - chr1_1:37575295-37575314 None:intergenic 35.0%
CAGTGGCAATAATTACAGTA+TGG - chr1_1:37575465-37575484 None:intergenic 35.0%
CATACTGTAATTATTGCCAC+TGG + chr1_1:37575463-37575482 Msa0021240:CDS 35.0%
! TACCCAGAGAAGATGAATTT+TGG + chr1_1:37575509-37575528 Msa0021240:CDS 35.0%
CTCCAAAATTCATCTTCTCT+GGG - chr1_1:37575514-37575533 None:intergenic 35.0%
CAAATATAATGCTTCCTCTG+TGG - chr1_1:37575626-37575645 None:intergenic 35.0%
ATATTTCCCAACTCTCTACT+TGG + chr1_1:37575733-37575752 Msa0021240:intron 35.0%
! ATTGTGAAGTGTTTAAGAGC+AGG - chr1_1:37575897-37575916 None:intergenic 35.0%
GAGAGTGGATAAACTAAAAG+GGG - chr1_1:37575923-37575942 None:intergenic 35.0%
GAGAGAGTGGATAAACTAAA+AGG - chr1_1:37575925-37575944 None:intergenic 35.0%
AACTGAAAGGAAAAACAGAG+AGG - chr1_1:37576102-37576121 None:intergenic 35.0%
TTAGCCTATGTTTATGTTGG+CGG - chr1_1:37576485-37576504 None:intergenic 35.0%
GCTAAGGCTTCTTTGTAATT+TGG + chr1_1:37576500-37576519 Msa0021240:intron 35.0%
TATGGAAAGAGAATGATCAC+AGG - chr1_1:37576603-37576622 None:intergenic 35.0%
!!! TTTGCAAGCACACTTTTTTG+GGG - chr1_1:37576628-37576647 None:intergenic 35.0%
GAAAACTATCTGCTTAGTCT+AGG + chr1_1:37576781-37576800 Msa0021240:intron 35.0%
AGGTTAGCAAAAGGGATTAA+AGG + chr1_1:37576848-37576867 Msa0021240:intron 35.0%
ATTTCCTGTCAGTTTGAGTA+TGG + chr1_1:37576900-37576919 Msa0021240:intron 35.0%
CTCCTGAATGTTTGTTTAAC+AGG + chr1_1:37576993-37577012 Msa0021240:intron 35.0%
AATACAAAAGGACAGATGTC+TGG + chr1_1:37577098-37577117 Msa0021240:CDS 35.0%
!! AGTAAGAAAGCTTGATAGTG+GGG + chr1_1:37577127-37577146 Msa0021240:CDS 35.0%
! ACAGTTGAGTATTTGGTGAA+TGG - chr1_1:37577196-37577215 None:intergenic 35.0%
ACTGCAAAAACTTCAGTTGA+AGG + chr1_1:37577269-37577288 Msa0021240:CDS 35.0%
! ATCAACACAAAGCATCCAAT+AGG - chr1_1:37577324-37577343 None:intergenic 35.0%
TTCCAGATCTCTCTAATGTT+TGG + chr1_1:37577572-37577591 Msa0021240:intron 35.0%
TCCAGATCTCTCTAATGTTT+GGG + chr1_1:37577573-37577592 Msa0021240:intron 35.0%
TCTCTCTAATGTTTGGGAAA+TGG + chr1_1:37577579-37577598 Msa0021240:intron 35.0%
CTCTCTAATGTTTGGGAAAT+GGG + chr1_1:37577580-37577599 Msa0021240:intron 35.0%
ATTCTCGTGATTTAGTGAAG+CGG - chr1_1:37577923-37577942 None:intergenic 35.0%
ACGAGAATTAAGAATGTTGG+TGG + chr1_1:37577935-37577954 Msa0021240:intron 35.0%
TCAAAGAGGGTCTCATAAAA+AGG + chr1_1:37578122-37578141 Msa0021240:intron 35.0%
CAAAGAGGGTCTCATAAAAA+GGG + chr1_1:37578123-37578142 Msa0021240:intron 35.0%
TCTTCTTATAGAGTTCCATC+AGG + chr1_1:37578675-37578694 Msa0021240:CDS 35.0%
! GTTCCTCAAAATTTTGTTGG+TGG + chr1_1:37578907-37578926 Msa0021240:intron 35.0%
! TAGCCACCAACAAAATTTTG+AGG - chr1_1:37578913-37578932 None:intergenic 35.0%
TAACTAAGTGTAGCAGGTAA+TGG - chr1_1:37579130-37579149 None:intergenic 35.0%
TGGAAGGCTAAGATTCATAT+TGG - chr1_1:37579400-37579419 None:intergenic 35.0%
GGCTGTTACAAGAAACAAAT+TGG - chr1_1:37579420-37579439 None:intergenic 35.0%
GCAGGTATGTATTCCTTATT+AGG + chr1_1:37579521-37579540 Msa0021240:intron 35.0%
AATTGTACCATGATAGTCCA+AGG + chr1_1:37579678-37579697 Msa0021240:CDS 35.0%
ATATAAGCCTTGGACTATCA+TGG - chr1_1:37579688-37579707 None:intergenic 35.0%
TAACATACCTTACTGAGGAT+TGG - chr1_1:37579758-37579777 None:intergenic 35.0%
GAACTATGCATTGAGACATT+TGG + chr1_1:37579958-37579977 Msa0021240:intron 35.0%
GACTATTCTACAGAATCTAC+AGG + chr1_1:37580371-37580390 Msa0021240:intron 35.0%
! TCCACCATCTTTTCTACTAT+AGG + chr1_1:37580431-37580450 Msa0021240:intron 35.0%
ACCTATAGTAGAAAAGATGG+TGG - chr1_1:37580435-37580454 None:intergenic 35.0%
AGCACCTATAGTAGAAAAGA+TGG - chr1_1:37580438-37580457 None:intergenic 35.0%
! TACCCTAACTCTCTTTTTGA+TGG + chr1_1:37580457-37580476 Msa0021240:intron 35.0%
CTCCATCAAAAAGAGAGTTA+GGG - chr1_1:37580462-37580481 None:intergenic 35.0%
TCTCCATCAAAAAGAGAGTT+AGG - chr1_1:37580463-37580482 None:intergenic 35.0%
TCAGTGTTTCATGATGTTGT+TGG + chr1_1:37580583-37580602 Msa0021240:intron 35.0%
GAACAATCTCTATATCCTCT+AGG + chr1_1:37580630-37580649 Msa0021240:intron 35.0%
CTCATTACAAATTCTGAACC+CGG + chr1_1:37580695-37580714 Msa0021240:intron 35.0%
AAGATGATTATTCCTTGGAG+TGG - chr1_1:37580855-37580874 None:intergenic 35.0%
CCACGTTAATACATTCACAA+TGG - chr1_1:37580923-37580942 None:intergenic 35.0%
CCATTGTGAATGTATTAACG+TGG + chr1_1:37580920-37580939 Msa0021240:intron 35.0%
! ACTTTCACTTCCTTGTTTGA+TGG + chr1_1:37581012-37581031 Msa0021240:intron 35.0%
TATTTGCCTCGATGAATTCT+CGG - chr1_1:37581515-37581534 None:intergenic 35.0%
TATGATCAGTCATTTCACCT+TGG - chr1_1:37581814-37581833 None:intergenic 35.0%
TATCTAGTTAACGTGAGATC+AGG - chr1_1:37581932-37581951 None:intergenic 35.0%
AGATATTTCCACTGTAACTG+CGG + chr1_1:37581947-37581966 Msa0021240:three_prime_UTR 35.0%
AAGTAATGATGAACCTGGTG+AGG - chr1_1:37573503-37573522 None:intergenic 40.0%
AGAGCAAGTAATGATGAACC+TGG - chr1_1:37573508-37573527 None:intergenic 40.0%
!! GTTAAGTGTCGGAGAAAACA+AGG + chr1_1:37573641-37573660 Msa0021240:intron 40.0%
TGGTGTGTCAATATCGTGTT+AGG + chr1_1:37573822-37573841 Msa0021240:intron 40.0%
GAATGGAGGGTAGTTGTTAA+AGG + chr1_1:37573881-37573900 Msa0021240:intron 40.0%
AAAGGATTTGGAGATGGCTT+AGG + chr1_1:37573899-37573918 Msa0021240:intron 40.0%
GAGGTAGTTGAGTATAACAG+TGG + chr1_1:37574168-37574187 Msa0021240:intron 40.0%
CAGTCCAGATACATCAACTT+TGG + chr1_1:37574409-37574428 Msa0021240:intron 40.0%
GTTTCTCCTATAAAACGGTC+CGG + chr1_1:37574441-37574460 Msa0021240:intron 40.0%
TTTCTCCTATAAAACGGTCC+GGG + chr1_1:37574442-37574461 Msa0021240:intron 40.0%
AGGTAACGCAGTTGAAAATG+TGG + chr1_1:37574665-37574684 Msa0021240:intron 40.0%
GAACACTACGGGTTTCAAAT+TGG - chr1_1:37574745-37574764 None:intergenic 40.0%
ACTGAAGTAGAGAACTTTCC+AGG + chr1_1:37574813-37574832 Msa0021240:CDS 40.0%
AACTTTCCAGGATTTCCAGA+CGG + chr1_1:37574825-37574844 Msa0021240:CDS 40.0%
GATTACTGGACCTGATCTAA+TGG + chr1_1:37574848-37574867 Msa0021240:CDS 40.0%
! TCACTGCTTTGGACAGTAAA+AGG - chr1_1:37575049-37575068 None:intergenic 40.0%
AACTCCCATATACCACGAAT+TGG - chr1_1:37575395-37575414 None:intergenic 40.0%
GCTCCAAAATTCATCTTCTC+TGG - chr1_1:37575515-37575534 None:intergenic 40.0%
!!! GAAGATGAATTTTGGAGCAG+AGG + chr1_1:37575517-37575536 Msa0021240:CDS 40.0%
AGTGCTTGTGCAATTTGTGA+TGG + chr1_1:37575544-37575563 Msa0021240:CDS 40.0%
AGAATTTGACCCTTGAAGAG+AGG - chr1_1:37575577-37575596 None:intergenic 40.0%
! AAATTCTTGCTGTCGTTGGA+GGG + chr1_1:37575590-37575609 Msa0021240:CDS 40.0%
!! CTTCTAAAGCCATGCAAGAT+AGG + chr1_1:37575698-37575717 Msa0021240:CDS 40.0%
GCCAACATAAACATAGGCTA+AGG + chr1_1:37576484-37576503 Msa0021240:intron 40.0%
GCCTTAGCCTATGTTTATGT+TGG - chr1_1:37576488-37576507 None:intergenic 40.0%
!!! GCACACTTTTTTGGGGAATA+TGG - chr1_1:37576621-37576640 None:intergenic 40.0%
AACTCCATACTCAAACTGAC+AGG - chr1_1:37576907-37576926 None:intergenic 40.0%
TTGAAGTGCACAGTGACATT+TGG - chr1_1:37577053-37577072 None:intergenic 40.0%
CCTCTCAACAGTTGAGTATT+TGG - chr1_1:37577203-37577222 None:intergenic 40.0%
CCAAATACTCAACTGTTGAG+AGG + chr1_1:37577200-37577219 Msa0021240:CDS 40.0%
TGGCTACTTACTAGTCAAAG+AGG + chr1_1:37577244-37577263 Msa0021240:CDS 40.0%
GGCTACTTACTAGTCAAAGA+GGG + chr1_1:37577245-37577264 Msa0021240:CDS 40.0%
TCCCAAACATTAGAGAGATC+TGG - chr1_1:37577577-37577596 None:intergenic 40.0%
GATCTATGTTCAATCTTGCC+TGG + chr1_1:37577639-37577658 Msa0021240:intron 40.0%
TGTTCAATCTTGCCTGGATA+TGG + chr1_1:37577645-37577664 Msa0021240:intron 40.0%
CGTTCTCTAAATCCATATCC+AGG - chr1_1:37577660-37577679 None:intergenic 40.0%
TTCTCGTGATTTAGTGAAGC+GGG - chr1_1:37577922-37577941 None:intergenic 40.0%
! TAATAGAGGTATGCGTATGC+TGG + chr1_1:37578072-37578091 Msa0021240:intron 40.0%
TGAAAAAGTGATAACTGCCG+AGG + chr1_1:37578531-37578550 Msa0021240:intron 40.0%
ATAACCTTAACATAGGGCCT+CGG - chr1_1:37578551-37578570 None:intergenic 40.0%
!! AGTGGCTTTGAGCAATGTTA+CGG + chr1_1:37578949-37578968 Msa0021240:intron 40.0%
! AATCATTGAAGCGCCCATTT+GGG - chr1_1:37579037-37579056 None:intergenic 40.0%
! AAATCATTGAAGCGCCCATT+TGG - chr1_1:37579038-37579057 None:intergenic 40.0%
ATCACACATTCCTTTACGTG+AGG + chr1_1:37579088-37579107 Msa0021240:intron 40.0%
GTAACAGCCAAAACATGAAG+AGG + chr1_1:37579431-37579450 Msa0021240:intron 40.0%
CTGTAAACAGGAAAACGTAC+AGG - chr1_1:37579645-37579664 None:intergenic 40.0%
ATTGAAGCCAATCCTCAGTA+AGG + chr1_1:37579748-37579767 Msa0021240:CDS 40.0%
!! TCTTTTGTTAGATGGTGGTG+TGG + chr1_1:37579907-37579926 Msa0021240:intron 40.0%
AAAATAGGCTCAGGTGGTTT+GGG - chr1_1:37580412-37580431 None:intergenic 40.0%
TTGGAGTTTGTCTGATGTAG+TGG - chr1_1:37580793-37580812 None:intergenic 40.0%
ATCCATGAAGCAAGTCACAA+TGG - chr1_1:37581413-37581432 None:intergenic 40.0%
! TGATTTTGCAGGACTGTTTC+AGG + chr1_1:37581468-37581487 Msa0021240:intron 40.0%
AGAATACCGAGAATTCATCG+AGG + chr1_1:37581506-37581525 Msa0021240:CDS 40.0%
CGAAAATGCTGATCAGTTCA+AGG - chr1_1:37581643-37581662 None:intergenic 40.0%
TTTCACCTTGGATGATGACA+GGG - chr1_1:37581802-37581821 None:intergenic 40.0%
ATTTCACCTTGGATGATGAC+AGG - chr1_1:37581803-37581822 None:intergenic 40.0%
! AGATGTTTCTACTGCAACAG+TGG + chr1_1:37581900-37581919 Msa0021240:three_prime_UTR 40.0%
ACTGCGAAGATAGGACTCTT+CGG + chr1_1:37573280-37573299 Msa0021240:CDS 45.0%
GAAACGATGATGAGAAGGTG+AGG - chr1_1:37573362-37573381 None:intergenic 45.0%
AAGAACGAGAACGAAGAGAG+CGG - chr1_1:37573402-37573421 None:intergenic 45.0%
TTAAATGTCGGGCTGAGTGT+TGG - chr1_1:37573996-37574015 None:intergenic 45.0%
TCTCTTATAAACAGGACCGG+AGG - chr1_1:37574352-37574371 None:intergenic 45.0%
GGGTCAACAAAAGACGTATC+TGG + chr1_1:37574377-37574396 Msa0021240:intron 45.0%
TTCTCCTATAAAACGGTCCG+GGG + chr1_1:37574443-37574462 Msa0021240:intron 45.0%
ATTATAGGTTCAGGTCCTGC+AGG + chr1_1:37574690-37574709 Msa0021240:CDS 45.0%
! TTTGAAACCCGTAGTGTTCG+AGG + chr1_1:37574746-37574765 Msa0021240:CDS 45.0%
TTGAAACCCGTAGTGTTCGA+GGG + chr1_1:37574747-37574766 Msa0021240:CDS 45.0%
! TTGGTAACCCTCGAACACTA+CGG - chr1_1:37574757-37574776 None:intergenic 45.0%
AGTGTTCGAGGGTTACCAAA+TGG + chr1_1:37574758-37574777 Msa0021240:CDS 45.0%
GTGTTCGAGGGTTACCAAAT+GGG + chr1_1:37574759-37574778 Msa0021240:CDS 45.0%
ACTTTCCAGGATTTCCAGAC+GGG + chr1_1:37574826-37574845 Msa0021240:CDS 45.0%
! TCTACTTGTCTAGGATGCGA+CGG + chr1_1:37574957-37574976 Msa0021240:intron 45.0%
TGTCCAAAGCAGTGAACGTA+AGG + chr1_1:37575054-37575073 Msa0021240:CDS 45.0%
TCACCTTACGTTCACTGCTT+TGG - chr1_1:37575060-37575079 None:intergenic 45.0%
GAGCAACTGCAAAACGACTT+AGG + chr1_1:37575485-37575504 Msa0021240:CDS 45.0%
! GGTCAAATTCTTGCTGTCGT+TGG + chr1_1:37575586-37575605 Msa0021240:CDS 45.0%
! CAAATTCTTGCTGTCGTTGG+AGG + chr1_1:37575589-37575608 Msa0021240:CDS 45.0%
! AATTCTTGCTGTCGTTGGAG+GGG + chr1_1:37575591-37575610 Msa0021240:CDS 45.0%
TTGTACGTCGAGACCAACTA+AGG + chr1_1:37575674-37575693 Msa0021240:CDS 45.0%
TGTACGTCGAGACCAACTAA+GGG + chr1_1:37575675-37575694 Msa0021240:CDS 45.0%
!! TGGCTTTAGAAGCCCTTAGT+TGG - chr1_1:37575690-37575709 None:intergenic 45.0%
CAGCTACCAAGTAGAGAGTT+GGG - chr1_1:37575742-37575761 None:intergenic 45.0%
TCAGCTACCAAGTAGAGAGT+TGG - chr1_1:37575743-37575762 None:intergenic 45.0%
ACATACGCACAAGATTCCTC+TGG + chr1_1:37575975-37575994 Msa0021240:intron 45.0%
ATTTCTCGTGAACGTGCGTT+AGG - chr1_1:37576459-37576478 None:intergenic 45.0%
TCCACCGCCAACATAAACAT+AGG + chr1_1:37576478-37576497 Msa0021240:intron 45.0%
GCACTTCAATACAGAGACTG+TGG + chr1_1:37577064-37577083 Msa0021240:CDS 45.0%
!! AAGAAAGCTTGATAGTGGGG+AGG + chr1_1:37577130-37577149 Msa0021240:CDS 45.0%
TATGCCGTAGAATAGCCCTT+TGG - chr1_1:37577171-37577190 None:intergenic 45.0%
AAAGGGCTATTCTACGGCAT+AGG + chr1_1:37577170-37577189 Msa0021240:CDS 45.0%
! CAGACTGGTCAAGTTCAACT+TGG - chr1_1:37577226-37577245 None:intergenic 45.0%
! CAAGTTGAACTTGACCAGTC+TGG + chr1_1:37577224-37577243 Msa0021240:CDS 45.0%
TGACTAGTAAGTAGCCAGAC+TGG - chr1_1:37577241-37577260 None:intergenic 45.0%
! GTTGAAGGTGTATTTGCTGC+TGG + chr1_1:37577284-37577303 Msa0021240:CDS 45.0%
GAGATGTGCAGGTAACCTAT+TGG + chr1_1:37577306-37577325 Msa0021240:intron 45.0%
!! AGCCTTTTAGGGAGAGTCAT+TGG + chr1_1:37577511-37577530 Msa0021240:intron 45.0%
TGAAGCGGGTCCCATATTTA+GGG - chr1_1:37577908-37577927 None:intergenic 45.0%
! GAGGGTCTTGTATTTAGGGA+CGG + chr1_1:37578160-37578179 Msa0021240:intron 45.0%
!! AATGTTCTTAAGGAGTGCCC+CGG + chr1_1:37578377-37578396 Msa0021240:intron 45.0%
TGTTCTCATAGGACCATGAG+TGG + chr1_1:37578578-37578597 Msa0021240:intron 45.0%
!! GTGGCTTTGAGCAATGTTAC+GGG + chr1_1:37578950-37578969 Msa0021240:intron 45.0%
TGACACAATGAGGTCCCAAA+TGG + chr1_1:37579020-37579039 Msa0021240:intron 45.0%
GACACAATGAGGTCCCAAAT+GGG + chr1_1:37579021-37579040 Msa0021240:intron 45.0%
AACAGACAGGGATGTTCAAG+CGG + chr1_1:37579467-37579486 Msa0021240:CDS 45.0%
ACTTACAAAGCATAAGGGGC+AGG + chr1_1:37579503-37579522 Msa0021240:CDS 45.0%
TCGCAGAGCATACTGTAAAC+AGG - chr1_1:37579657-37579676 None:intergenic 45.0%
TTATACACGTCACCGACATG+TGG + chr1_1:37579713-37579732 Msa0021240:CDS 45.0%
! ATTGGCTTCAATGTCCGACA+CGG - chr1_1:37579740-37579759 None:intergenic 45.0%
TCCGACATATGAGCATCACA+GGG - chr1_1:37580013-37580032 None:intergenic 45.0%
TTCCGACATATGAGCATCAC+AGG - chr1_1:37580014-37580033 None:intergenic 45.0%
! TTAGTGGGATAAGGCTTGGT+TGG - chr1_1:37580230-37580249 None:intergenic 45.0%
! CAAGCCTTATCCCACTAACT+GGG + chr1_1:37580232-37580251 Msa0021240:intron 45.0%
! AAGCCTTATCCCACTAACTG+GGG + chr1_1:37580233-37580252 Msa0021240:intron 45.0%
GAAAATAGGCTCAGGTGGTT+TGG - chr1_1:37580413-37580432 None:intergenic 45.0%
!! AGATGGTGGAAAATAGGCTC+AGG - chr1_1:37580421-37580440 None:intergenic 45.0%
!! GGTTCTGAAGTATCTCCTAG+AGG - chr1_1:37580648-37580667 None:intergenic 45.0%
TTCCTTGGAGTGGAGCTTAA+CGG - chr1_1:37580845-37580864 None:intergenic 45.0%
AATTGACAGCGCTATTCAGC+AGG - chr1_1:37581608-37581627 None:intergenic 45.0%
AACTACCAGCTTCTCGTTGA+AGG + chr1_1:37581754-37581773 Msa0021240:three_prime_UTR 45.0%
GTTAACGTGAGATCAGGAAG+TGG - chr1_1:37581926-37581945 None:intergenic 45.0%
TATTTCCACTGTAACTGCGG+CGG + chr1_1:37581950-37581969 Msa0021240:three_prime_UTR 45.0%
!!! ATTTTTTTTTACATTTTAAT+TGG + chr1_1:37581840-37581859 Msa0021240:three_prime_UTR 5.0%
GAAGATAGGACTCTTCGGAG+TGG + chr1_1:37573285-37573304 Msa0021240:CDS 50.0%
ATGAGAAGGTGAGGAGAGAG+AGG - chr1_1:37573353-37573372 None:intergenic 50.0%
!! AAGAAGTGTCGGAAGAGGCT+CGG - chr1_1:37573468-37573487 None:intergenic 50.0%
! TACGGAGGAGGAAGAAGTGT+CGG - chr1_1:37573479-37573498 None:intergenic 50.0%
TGATGAACCTGGTGAGGCTA+CGG - chr1_1:37573497-37573516 None:intergenic 50.0%
! TCTGAGACGGAGAGAGTAGT+TGG - chr1_1:37574036-37574055 None:intergenic 50.0%
TCTCCTATAAAACGGTCCGG+GGG + chr1_1:37574444-37574463 Msa0021240:intron 50.0%
ATTGCTGCTGTGTATCCTGC+AGG - chr1_1:37574708-37574727 None:intergenic 50.0%
TGGTAACCCTCGAACACTAC+GGG - chr1_1:37574756-37574775 None:intergenic 50.0%
TTCGAGGGTTACCAAATGGG+TGG + chr1_1:37574762-37574781 Msa0021240:CDS 50.0%
TACCAAATGGGTGGTGTTCC+TGG + chr1_1:37574771-37574790 Msa0021240:CDS 50.0%
ACCAAATGGGTGGTGTTCCT+GGG + chr1_1:37574772-37574791 Msa0021240:CDS 50.0%
GTAGTCATCAATTGTCCCCC+AGG - chr1_1:37574792-37574811 None:intergenic 50.0%
GTAATCCCGTCTGGAAATCC+TGG - chr1_1:37574834-37574853 None:intergenic 50.0%
GGATTTCCAGACGGGATTAC+TGG + chr1_1:37574834-37574853 Msa0021240:CDS 50.0%
! CTGGACCTGATCTAATGGAC+AGG + chr1_1:37574853-37574872 Msa0021240:CDS 50.0%
! TCGTTTTGCAGTTGCTCCAG+TGG - chr1_1:37575482-37575501 None:intergenic 50.0%
! TGGAGCATCACCTCTCTTCA+AGG + chr1_1:37575564-37575583 Msa0021240:CDS 50.0%
! GGAGCATCACCTCTCTTCAA+GGG + chr1_1:37575565-37575584 Msa0021240:CDS 50.0%
! ATTCTTGCTGTCGTTGGAGG+GGG + chr1_1:37575592-37575611 Msa0021240:CDS 50.0%
TCGGACACACCTATCTTGCA+TGG - chr1_1:37575710-37575729 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+TGG - chr1_1:37575938-37575957 None:intergenic 50.0%
GCCTATGTTTATGTTGGCGG+TGG - chr1_1:37576482-37576501 None:intergenic 50.0%
AGTCAGTGCTTGAGGCCAAA+GGG + chr1_1:37577153-37577172 Msa0021240:CDS 50.0%
GAGGCCAAAGGGCTATTCTA+CGG + chr1_1:37577164-37577183 Msa0021240:CDS 50.0%
! ATTTGCTGCTGGAGATGTGC+AGG + chr1_1:37577295-37577314 Msa0021240:CDS 50.0%
GGCCAATGACTCTCCCTAAA+AGG - chr1_1:37577516-37577535 None:intergenic 50.0%
GTGAAGCGGGTCCCATATTT+AGG - chr1_1:37577909-37577928 None:intergenic 50.0%
! GGTCTTGTATTTAGGGACGG+AGG + chr1_1:37578163-37578182 Msa0021240:intron 50.0%
!! ATGTTCTTAAGGAGTGCCCC+GGG + chr1_1:37578378-37578397 Msa0021240:intron 50.0%
AAATGCTAACAAGCGACCCC+GGG - chr1_1:37578398-37578417 None:intergenic 50.0%
GAAATGCTAACAAGCGACCC+CGG - chr1_1:37578399-37578418 None:intergenic 50.0%
TCTCATAGGACCATGAGTGG+AGG + chr1_1:37578581-37578600 Msa0021240:intron 50.0%
TCCAGATCCAGCAGCAGTTA+CGG - chr1_1:37578611-37578630 None:intergenic 50.0%
GAGAGATATCTCGTCAGCAG+TGG + chr1_1:37578652-37578671 Msa0021240:CDS 50.0%
ACAGACAGGGATGTTCAAGC+GGG + chr1_1:37579468-37579487 Msa0021240:CDS 50.0%
ATATGAGCATCACAGGGCAC+TGG - chr1_1:37580007-37580026 None:intergenic 50.0%
GCCCTGTGATGCTCATATGT+CGG + chr1_1:37580009-37580028 Msa0021240:intron 50.0%
CCAGTTAGTGGGATAAGGCT+TGG - chr1_1:37580234-37580253 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAC+TGG + chr1_1:37580231-37580250 Msa0021240:intron 50.0%
CTTATCCCACTAACTGGGGT+CGG + chr1_1:37580237-37580256 Msa0021240:intron 50.0%
TGGTGGAAAATAGGCTCAGG+TGG - chr1_1:37580418-37580437 None:intergenic 50.0%
! CTCTGAAGGAGCATAGCTCT+GGG - chr1_1:37580756-37580775 None:intergenic 50.0%
! TCTCTGAAGGAGCATAGCTC+TGG - chr1_1:37580757-37580776 None:intergenic 50.0%
ACTCCAACTCAGTCTGATGC+TGG + chr1_1:37580806-37580825 Msa0021240:intron 50.0%
CTCCAACTCAGTCTGATGCT+GGG + chr1_1:37580807-37580826 Msa0021240:intron 50.0%
TCCAACTCAGTCTGATGCTG+GGG + chr1_1:37580808-37580827 Msa0021240:intron 50.0%
TACCGTTAAGCTCCACTCCA+AGG + chr1_1:37580840-37580859 Msa0021240:intron 50.0%
!! CCAGCTGCTTCTGCTATTTC+TGG - chr1_1:37581144-37581163 None:intergenic 50.0%
CCAGAAATAGCAGAAGCAGC+TGG + chr1_1:37581141-37581160 Msa0021240:CDS 50.0%
AGCAGAAGCAGCTGGAATCA+TGG + chr1_1:37581149-37581168 Msa0021240:CDS 50.0%
GCAGAAGCAGCTGGAATCAT+GGG + chr1_1:37581150-37581169 Msa0021240:CDS 50.0%
!! GGCCATTGTGACTTGCTTCA+TGG + chr1_1:37581408-37581427 Msa0021240:intron 50.0%
CATTGCCTTCAACGAGAAGC+TGG - chr1_1:37581762-37581781 None:intergenic 50.0%
GCTTCTCGTTGAAGGCAATG+TGG + chr1_1:37581762-37581781 Msa0021240:three_prime_UTR 50.0%
TCACACCCTGTCATCATCCA+AGG + chr1_1:37581794-37581813 Msa0021240:three_prime_UTR 50.0%
ATTTCCACTGTAACTGCGGC+GGG + chr1_1:37581951-37581970 Msa0021240:three_prime_UTR 50.0%
GTGACACGGTGGTTGTGAGT+GGG - chr1_1:37573322-37573341 None:intergenic 55.0%
GAGAGGAAGCAGTGGTGACA+CGG - chr1_1:37573336-37573355 None:intergenic 55.0%
TGAGGAGAGAGAGGAAGCAG+TGG - chr1_1:37573344-37573363 None:intergenic 55.0%
!! GGAGGAAGAAGTGTCGGAAG+AGG - chr1_1:37573473-37573492 None:intergenic 55.0%
! ACTCCCCCGGACCGTTTTAT+AGG - chr1_1:37574450-37574469 None:intergenic 55.0%
CCAAATGGGTGGTGTTCCTG+GGG + chr1_1:37574773-37574792 Msa0021240:CDS 55.0%
CAAATGGGTGGTGTTCCTGG+GGG + chr1_1:37574774-37574793 Msa0021240:CDS 55.0%
TCAGGTCCAGTAATCCCGTC+TGG - chr1_1:37574843-37574862 None:intergenic 55.0%
TCTCAAACGCACAGTGGCAG+TGG - chr1_1:37576391-37576410 None:intergenic 55.0%
CAAGGCTCTCAAACGCACAG+TGG - chr1_1:37576397-37576416 None:intergenic 55.0%
GAGTCAGTGCTTGAGGCCAA+AGG + chr1_1:37577152-37577171 Msa0021240:CDS 55.0%
!! TGTTCTTAAGGAGTGCCCCG+GGG + chr1_1:37578379-37578398 Msa0021240:intron 55.0%
AATGCTAACAAGCGACCCCG+GGG - chr1_1:37578397-37578416 None:intergenic 55.0%
ACTGCCGAGGCCCTATGTTA+AGG + chr1_1:37578544-37578563 Msa0021240:intron 55.0%
TTACGGCTTGCCTCCACTCA+TGG - chr1_1:37578594-37578613 None:intergenic 55.0%
CGACCCCAGTTAGTGGGATA+AGG - chr1_1:37580239-37580258 None:intergenic 55.0%
TGTAGCCGACCCCAGTTAGT+GGG - chr1_1:37580245-37580264 None:intergenic 55.0%
ATGTAGCCGACCCCAGTTAG+TGG - chr1_1:37580246-37580265 None:intergenic 55.0%
ACTAACTGGGGTCGGCTACA+TGG + chr1_1:37580245-37580264 Msa0021240:intron 55.0%
TCCCCAGCATCAGACTGAGT+TGG - chr1_1:37580812-37580831 None:intergenic 55.0%
ACACGGTGGTTGTGAGTGGG+AGG - chr1_1:37573319-37573338 None:intergenic 60.0%
GGTGACACGGTGGTTGTGAG+TGG - chr1_1:37573323-37573342 None:intergenic 60.0%
AGGAAGCAGTGGTGACACGG+TGG - chr1_1:37573333-37573352 None:intergenic 60.0%
TGAACCTGGTGAGGCTACGG+AGG - chr1_1:37573494-37573513 None:intergenic 60.0%
CCCCAGGAACACCACCCATT+TGG - chr1_1:37574776-37574795 None:intergenic 60.0%
TGCGACGGCAAGCTGAACGT+TGG + chr1_1:37574972-37574991 Msa0021240:CDS 60.0%
GCGACGGCAAGCTGAACGTT+GGG + chr1_1:37574973-37574992 Msa0021240:CDS 60.0%
CGACGGCAAGCTGAACGTTG+GGG + chr1_1:37574974-37574993 Msa0021240:CDS 60.0%
AGGGGGTGATACAGCCACAG+AGG + chr1_1:37575609-37575628 Msa0021240:CDS 60.0%
TGGGGAGGAGTCAGTGCTTG+AGG + chr1_1:37577145-37577164 Msa0021240:CDS 60.0%
AGGCAAGCCGTAACTGCTGC+TGG + chr1_1:37578601-37578620 Msa0021240:CDS 60.0%
GCCGTAACTGCTGCTGGATC+TGG + chr1_1:37578607-37578626 Msa0021240:CDS 60.0%
CACCGACATGTGGTCCGTGT+CGG + chr1_1:37579723-37579742 Msa0021240:CDS 60.0%
GTCCGACACGGACCACATGT+CGG - chr1_1:37579728-37579747 None:intergenic 60.0%
!! GAAGGAGCATAGCTCTGGGC+AGG - chr1_1:37580752-37580771 None:intergenic 60.0%
AACTGCGGCGGGACAGAATC+TGG + chr1_1:37581962-37581981 Msa0021240:three_prime_UTR 60.0%
TCCTCCTCCGTAGCCTCACC+AGG + chr1_1:37573487-37573506 Msa0021240:CDS 65.0%
ACCTGGTGAGGCTACGGAGG+AGG - chr1_1:37573491-37573510 None:intergenic 65.0%
CTGTCCCGCCGCAGTTACAG+TGG - chr1_1:37581958-37581977 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 37573274 37581985 37573274 ID=Msa0021240;Name=Msa0021240
chr1_1 mRNA 37573274 37581985 37573274 ID=Msa0021240-mRNA-1;Parent=Msa0021240;Name=Msa0021240-mRNA-1;_AED=0.06;_eAED=0.07;_QI=0|1|0.9|1|1|1|10|446|528
chr1_1 exon 37573274 37573508 37573274 ID=Msa0021240-mRNA-1:exon:11765;Parent=Msa0021240-mRNA-1
chr1_1 exon 37574667 37574874 37574667 ID=Msa0021240-mRNA-1:exon:11766;Parent=Msa0021240-mRNA-1
chr1_1 exon 37574970 37575075 37574970 ID=Msa0021240-mRNA-1:exon:11767;Parent=Msa0021240-mRNA-1
chr1_1 exon 37575454 37575719 37575454 ID=Msa0021240-mRNA-1:exon:11768;Parent=Msa0021240-mRNA-1
chr1_1 exon 37577037 37577316 37577037 ID=Msa0021240-mRNA-1:exon:11769;Parent=Msa0021240-mRNA-1
chr1_1 exon 37578589 37578696 37578589 ID=Msa0021240-mRNA-1:exon:11770;Parent=Msa0021240-mRNA-1
chr1_1 exon 37579438 37579524 37579438 ID=Msa0021240-mRNA-1:exon:11771;Parent=Msa0021240-mRNA-1
chr1_1 exon 37579665 37579769 37579665 ID=Msa0021240-mRNA-1:exon:11772;Parent=Msa0021240-mRNA-1
chr1_1 exon 37581084 37581214 37581084 ID=Msa0021240-mRNA-1:exon:11773;Parent=Msa0021240-mRNA-1
chr1_1 exon 37581479 37581985 37581479 ID=Msa0021240-mRNA-1:exon:11774;Parent=Msa0021240-mRNA-1
chr1_1 CDS 37573274 37573508 37573274 ID=Msa0021240-mRNA-1:cds;Parent=Msa0021240-mRNA-1
chr1_1 CDS 37574667 37574874 37574667 ID=Msa0021240-mRNA-1:cds;Parent=Msa0021240-mRNA-1
chr1_1 CDS 37574970 37575075 37574970 ID=Msa0021240-mRNA-1:cds;Parent=Msa0021240-mRNA-1
chr1_1 CDS 37575454 37575719 37575454 ID=Msa0021240-mRNA-1:cds;Parent=Msa0021240-mRNA-1
chr1_1 CDS 37577037 37577316 37577037 ID=Msa0021240-mRNA-1:cds;Parent=Msa0021240-mRNA-1
chr1_1 CDS 37578589 37578696 37578589 ID=Msa0021240-mRNA-1:cds;Parent=Msa0021240-mRNA-1
chr1_1 CDS 37579438 37579524 37579438 ID=Msa0021240-mRNA-1:cds;Parent=Msa0021240-mRNA-1
chr1_1 CDS 37579665 37579769 37579665 ID=Msa0021240-mRNA-1:cds;Parent=Msa0021240-mRNA-1
chr1_1 CDS 37581084 37581214 37581084 ID=Msa0021240-mRNA-1:cds;Parent=Msa0021240-mRNA-1
chr1_1 CDS 37581479 37581539 37581479 ID=Msa0021240-mRNA-1:cds;Parent=Msa0021240-mRNA-1
chr1_1 three_prime_UTR 37581540 37581985 37581540 ID=Msa0021240-mRNA-1:three_prime_utr;Parent=Msa0021240-mRNA-1
Gene Sequence

>Msa0021240

ATGGTTACTGCGAAGATAGGACTCTTCGGAGTGGCAACACTTCCTCCCACTCACAACCACCGTGTCACCACTGCTTCCTCTCTCTCCTCACCTTCTCATCATCGTTTCATCTTCATCAACTCACGCCGCTCTCTTCGTTCTCGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCACACTCCGAGCCTCTTCCGACACTTCTTCCTCCTCCGTAGCCTCACCAGGTAACGCAGTTGAAAATGTGGTAATTATAGGTTCAGGTCCTGCAGGATACACAGCAGCAATATATGCTGCACGAGCCAATTTGAAACCCGTAGTGTTCGAGGGTTACCAAATGGGTGGTGTTCCTGGGGGACAATTGATGACTACAACTGAAGTAGAGAACTTTCCAGGATTTCCAGACGGGATTACTGGACCTGATCTAATGGACAGGATGCGACGGCAAGCTGAACGTTGGGGAGCAGAATTGCATCATGAAGATGTTGAAGCTATTGATGTGAAGACTAGTCCTTTTACTGTCCAAAGCAGTGAACGTAAGGTTAAGAGCCATACTGTAATTATTGCCACTGGAGCAACTGCAAAACGACTTAGGCTACCCAGAGAAGATGAATTTTGGAGCAGAGGAATTAGTGCTTGTGCAATTTGTGATGGAGCATCACCTCTCTTCAAGGGTCAAATTCTTGCTGTCGTTGGAGGGGGTGATACAGCCACAGAGGAAGCATTATATTTGACAAAATATGCTCGTCATGTTCACTTACTTGTACGTCGAGACCAACTAAGGGCTTCTAAAGCCATGCAAGATAGAGTGTATGACAATCCAAATGTCACTGTGCACTTCAATACAGAGACTGTGGATATTGTGAGCAATACAAAAGGACAGATGTCTGGCATTTTAGTAAGAAAGCTTGATAGTGGGGAGGAGTCAGTGCTTGAGGCCAAAGGGCTATTCTACGGCATAGGCCATTCACCAAATACTCAACTGTTGAGAGGCCAAGTTGAACTTGACCAGTCTGGCTACTTACTAGTCAAAGAGGGTACTGCAAAAACTTCAGTTGAAGGTGTATTTGCTGCTGGAGATGTGCAGGACCATGAGTGGAGGCAAGCCGTAACTGCTGCTGGATCTGGATGTATTGCAGCTTTATCAGTTGAGAGATATCTCGTCAGCAGTGGTCTTCTTATAGAGTTCCATCAGCCAAAACATGAAGAGGTTAAGAAGGAATTAACAGACAGGGATGTTCAAGCGGGCTTTGACATTACACTTACAAAGCATAAGGGGCAGTATGCTCTGCGAAAATTGTACCATGATAGTCCAAGGCTTATATGTGTATTATACACGTCACCGACATGTGGTCCGTGTCGGACATTGAAGCCAATCCTCAGTAAGGTAATTGATGAATATGATCAGAGTGTACATTTTGTTGAAATTGATATAGAGGAAGATCCAGAAATAGCAGAAGCAGCTGGAATCATGGGTACTCCGTGTGTGCAGTTCTTTAAAAACAAGGAGAATCTTAAGACTGTTTCAGGAGTTAAAATGAAGAGAGAATACCGAGAATTCATCGAGGCAAATATATAG

Protein sequence

>Msa0021240

MVTAKIGLFGVATLPPTHNHRVTTASSLSSPSHHRFIFINSRRSLRSRSSSSSSSSSSSSSLTLRASSDTSSSSVASPGNAVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQMGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHHEDVEAIDVKTSPFTVQSSERKVKSHTVIIATGATAKRLRLPREDEFWSRGISACAICDGASPLFKGQILAVVGGGDTATEEALYLTKYARHVHLLVRRDQLRASKAMQDRVYDNPNVTVHFNTETVDIVSNTKGQMSGILVRKLDSGEESVLEAKGLFYGIGHSPNTQLLRGQVELDQSGYLLVKEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVSSGLLIEFHQPKHEEVKKELTDRDVQAGFDITLTKHKGQYALRKLYHDSPRLICVLYTSPTCGPCRTLKPILSKVIDEYDQSVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKENLKTVSGVKMKREYREFIEANI*