AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0512430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0512430 MtrunA17_Chr3g0120521 84.270 89 14 0 1 89 506 594 1.71e-46 158
Msa0512430 MtrunA17_Chr7g0261701 62.366 93 35 0 1 93 29 121 1.36e-39 133
Msa0512430 MtrunA17_Chr4g0076611 61.290 93 36 0 1 93 433 525 1.42e-36 130
Msa0512430 MtrunA17_Chr4g0057531 61.290 93 36 0 1 93 510 602 1.57e-35 127
Msa0512430 MtrunA17_Chr4g0057511 60.215 93 37 0 1 93 349 441 1.07e-34 124
Msa0512430 MtrunA17_Chr4g0057481 61.290 93 36 0 1 93 423 515 2.97e-34 124
Msa0512430 MtrunA17_Chr5g0447171 66.667 90 21 1 1 90 207 287 4.58e-34 122
Msa0512430 MtrunA17_Chr4g0057491 58.065 93 39 0 1 93 355 447 1.81e-33 121
Msa0512430 MtrunA17_Chr5g0439271 64.045 89 32 0 1 89 337 425 4.73e-33 120
Msa0512430 MtrunA17_Chr4g0057461 58.427 89 37 0 1 89 361 449 5.31e-33 120
Msa0512430 MtrunA17_Chr4g0057471 58.065 93 39 0 1 93 442 534 1.89e-32 119
Msa0512430 MtrunA17_Chr8g0344331 61.798 89 34 0 1 89 502 590 2.67e-32 118
Msa0512430 MtrunA17_Chr7g0250481 62.222 90 33 1 1 89 531 620 5.13e-32 117
Msa0512430 MtrunA17_Chr4g0053781 53.933 89 41 0 1 89 484 572 1.23e-31 116
Msa0512430 MtrunA17_Chr7g0250441 57.447 94 39 1 1 93 16 109 1.41e-31 112
Msa0512430 MtrunA17_Chr5g0401511 55.056 89 40 0 1 89 490 578 6.50e-31 114
Msa0512430 MtrunA17_Chr7g0250371 60.000 90 35 1 1 89 518 607 8.49e-31 114
Msa0512430 MtrunA17_Chr5g0423261 55.914 93 41 0 1 93 355 447 1.80e-30 113
Msa0512430 MtrunA17_Chr7g0250331 60.000 90 35 1 1 89 539 628 2.23e-30 112
Msa0512430 MtrunA17_Chr4g0020651 52.874 87 41 0 1 87 486 572 3.14e-30 112
Msa0512430 MtrunA17_Chr4g0037221 52.809 89 42 0 1 89 492 580 5.47e-30 111
Msa0512430 MtrunA17_Chr7g0250411 60.000 90 35 1 1 89 517 606 7.94e-30 111
Msa0512430 MtrunA17_Chr1g0204321 57.303 89 38 0 1 89 507 595 9.53e-30 111
Msa0512430 MtrunA17_Chr1g0152771 53.933 89 41 0 1 89 482 570 1.03e-29 110
Msa0512430 MtrunA17_Chr7g0250391 57.778 90 37 1 1 89 516 605 1.55e-29 110
Msa0512430 MtrunA17_Chr2g0300751 55.056 89 40 0 1 89 502 590 2.18e-29 110
Msa0512430 MtrunA17_Chr7g0227991 52.747 91 43 0 1 91 471 561 3.28e-29 109
Msa0512430 MtrunA17_Chr2g0285111 53.261 92 42 1 1 91 519 610 7.34e-29 108
Msa0512430 MtrunA17_Chr6g0470851 50.549 91 43 1 1 89 466 556 7.34e-29 108
Msa0512430 MtrunA17_Chr3g0134621 52.809 89 42 0 1 89 459 547 8.02e-29 108
Msa0512430 MtrunA17_Chr1g0146251 52.326 86 41 0 4 89 476 561 9.47e-29 108
Msa0512430 MtrunA17_Chr1g0170081 53.488 86 40 0 4 89 472 557 1.03e-28 108
Msa0512430 MtrunA17_Chr2g0285121 54.348 92 41 1 1 91 516 607 1.16e-28 108
Msa0512430 MtrunA17_Chr4g0070391 54.444 90 40 1 1 90 481 569 1.25e-28 107
Msa0512430 MtrunA17_Chr8g0376841 53.261 92 43 0 1 92 493 584 2.30e-28 107
Msa0512430 MtrunA17_Chr8g0344971 52.874 87 41 0 3 89 485 571 2.82e-28 107
Msa0512430 MtrunA17_Chr1g0146271 51.163 86 42 0 4 89 474 559 4.27e-28 106
Msa0512430 MtrunA17_Chr8g0334521 48.352 91 47 0 1 91 471 561 7.21e-28 105
Msa0512430 MtrunA17_Chr6g0470881 52.273 88 40 1 4 89 469 556 7.64e-28 105
Msa0512430 MtrunA17_Chr7g0262161 55.056 89 40 0 1 89 485 573 7.75e-28 105
Msa0512430 MtrunA17_Chr7g0246461 50.562 89 44 0 1 89 467 555 2.79e-27 103
Msa0512430 MtrunA17_Chr4g0035881 46.602 103 51 1 1 99 225 327 1.16e-26 100
Msa0512430 MtrunA17_Chr5g0407701 54.545 88 32 1 2 89 494 573 1.35e-26 102
Msa0512430 MtrunA17_Chr6g0480721 50.538 93 44 2 1 92 340 431 1.52e-26 102
Msa0512430 MtrunA17_Chr2g0301011 49.438 89 45 0 1 89 335 423 2.70e-26 100
Msa0512430 MtrunA17_Chr8g0346361 48.352 91 47 0 1 91 234 324 3.03e-26 100
Msa0512430 MtrunA17_Chr8g0351011 50.549 91 45 0 1 91 489 579 4.54e-26 100
Msa0512430 MtrunA17_Chr8g0334491 52.273 88 32 1 4 91 476 553 1.00e-25 99.8
Msa0512430 MtrunA17_Chr8g0369891 53.933 89 31 2 1 89 498 576 8.45e-25 97.1
Msa0512430 MtrunA17_Chr4g0026641 51.136 88 41 1 2 89 491 576 9.32e-25 97.1
Msa0512430 MtrunA17_Chr5g0398331 53.933 89 34 1 1 89 489 570 3.89e-24 95.1
Msa0512430 MtrunA17_Chr4g0057061 53.933 89 37 2 1 89 512 596 1.14e-23 94.0
Msa0512430 MtrunA17_Chr8g0377961 48.913 92 40 2 1 92 515 599 1.34e-23 93.6
Msa0512430 MtrunA17_Chr5g0398241 53.409 88 34 1 4 91 495 575 1.37e-23 93.6
Msa0512430 MtrunA17_Chr5g0398401 53.409 88 34 1 4 91 495 575 1.40e-23 93.6
Msa0512430 MtrunA17_Chr5g0398351 53.488 86 33 1 4 89 475 553 2.12e-23 93.2
Msa0512430 MtrunA17_Chr5g0398351 52.326 86 34 1 4 89 1246 1324 7.86e-23 91.7
Msa0512430 MtrunA17_Chr3g0079971 47.126 87 44 2 5 91 473 557 5.45e-23 92.0
Msa0512430 MtrunA17_Chr3g0143231 47.778 90 46 1 1 90 2 90 5.69e-23 84.7
Msa0512430 MtrunA17_Chr7g0246451 44.444 90 50 0 2 91 483 572 7.24e-23 91.7
Msa0512430 MtrunA17_Chr5g0398311 51.685 89 36 1 1 89 485 566 9.50e-23 91.3
Msa0512430 MtrunA17_Chr1g0189251 50.549 91 35 3 4 89 486 571 1.17e-22 90.9
Msa0512430 MtrunA17_Chr8g0345991 48.913 92 37 3 3 89 484 570 2.54e-22 90.1
Msa0512430 MtrunA17_Chr2g0312861 48.000 75 39 0 17 91 1 75 7.56e-22 87.0
Msa0512430 MtrunA17_Chr2g0303881 48.352 91 38 2 3 89 458 543 1.10e-21 88.2
Msa0512430 MtrunA17_Chr7g0266051 47.191 89 47 0 1 89 442 530 1.28e-21 87.8
Msa0512430 MtrunA17_Chr2g0301031 48.649 74 38 0 17 90 1 74 1.66e-21 85.1
Msa0512430 MtrunA17_Chr3g0136151 46.739 92 48 1 1 92 490 580 2.42e-21 87.0
Msa0512430 MtrunA17_Chr1g0189561 51.064 94 39 2 2 91 487 577 2.75e-21 87.0
Msa0512430 MtrunA17_Chr8g0354741 47.191 89 45 1 1 89 368 454 2.92e-21 87.0
Msa0512430 MtrunA17_Chr3g0105451 45.652 92 37 1 1 92 19 97 8.02e-21 84.0
Msa0512430 MtrunA17_Chr8g0345971 47.872 94 33 3 4 89 490 575 8.07e-21 85.9
Msa0512430 MtrunA17_Chr5g0418921 46.739 92 39 2 3 89 18 104 3.64e-20 80.1
Msa0512430 MtrunA17_Chr3g0143251 45.055 91 49 1 2 92 495 584 5.64e-20 83.2
Msa0512430 MtrunA17_Chr8g0345981 43.269 104 44 4 3 96 488 586 6.40e-20 83.2
Msa0512430 MtrunA17_Chr8g0354771 42.222 90 51 1 1 89 495 584 1.38e-19 82.0
Msa0512430 MtrunA17_Chr7g0248871 46.739 92 46 2 2 91 493 583 2.43e-19 81.6
Msa0512430 MtrunA17_Chr4g0071191 42.222 90 50 2 4 92 63 151 6.46e-19 78.6
Msa0512430 MtrunA17_Chr7g0276151 45.455 88 45 2 4 89 486 572 1.19e-18 79.3
Msa0512430 MtrunA17_Chr4g0026661 45.205 73 38 1 17 89 12 82 1.44e-18 77.8
Msa0512430 MtrunA17_Chr4g0071871 45.745 94 43 2 1 89 542 632 3.82e-18 78.2
Msa0512430 MtrunA17_Chr7g0248861 46.067 89 47 1 2 89 495 583 5.54e-18 77.8
Msa0512430 MtrunA17_Chr3g0142971 42.353 85 48 1 1 85 2 85 2.74e-17 70.5
Msa0512430 MtrunA17_Chr4g0075331 43.750 96 42 3 4 92 471 561 1.27e-16 73.6
Msa0512430 MtrunA17_Chr8g0345961 48.052 77 39 1 13 89 498 573 7.25e-16 71.6
Msa0512430 MtrunA17_Chr2g0298601 42.391 92 41 3 1 85 542 628 9.38e-16 71.2
Msa0512430 MtrunA17_Chr8g0380961 36.842 95 46 3 4 90 576 664 3.94e-14 66.6
Msa0512430 MtrunA17_Chr2g0302951 36.082 97 48 3 4 92 568 658 2.27e-13 64.3
Msa0512430 MtrunA17_Chr3g0097061 43.396 53 30 0 39 91 321 373 2.85e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0512430 AT2G04160.1 74.157 89 23 0 1 89 505 593 5.82e-39 137
Msa0512430 AT5G59810.1 68.817 93 29 0 1 93 511 603 6.09e-38 134
Msa0512430 AT2G05920.1 59.551 89 36 0 1 89 480 568 1.82e-33 122
Msa0512430 AT5G58840.3 51.000 100 49 0 1 100 443 542 7.04e-33 119
Msa0512430 AT5G67360.1 57.609 92 39 0 1 92 486 577 8.73e-33 120
Msa0512430 AT3G14067.1 58.427 89 37 0 1 89 490 578 3.90e-31 115
Msa0512430 AT5G59090.2 54.839 93 40 1 1 93 465 555 6.44e-31 114
Msa0512430 AT5G59100.1 53.933 89 41 0 1 89 472 560 6.53e-31 114
Msa0512430 AT5G58840.1 53.933 89 41 0 1 89 443 531 1.04e-30 114
Msa0512430 AT5G58820.1 52.809 89 42 0 1 89 439 527 3.96e-30 112
Msa0512430 AT5G59090.3 56.180 89 37 1 1 89 463 549 4.22e-30 112
Msa0512430 AT5G59090.1 56.180 89 37 1 1 89 465 551 4.34e-30 112
Msa0512430 AT5G58830.1 51.685 89 43 0 1 89 442 530 1.70e-29 110
Msa0512430 AT1G04110.1 56.180 89 39 0 1 89 496 584 2.92e-29 110
Msa0512430 AT5G59120.1 55.056 89 38 1 1 89 464 550 4.75e-29 109
Msa0512430 AT5G51750.1 56.180 89 39 0 1 89 504 592 5.65e-29 109
Msa0512430 AT4G34980.1 55.056 89 40 0 1 89 482 570 1.25e-28 108
Msa0512430 AT3G14240.1 52.222 90 43 0 1 90 493 582 6.59e-28 106
Msa0512430 AT3G46840.1 51.685 89 41 1 1 89 473 559 5.51e-27 103
Msa0512430 AT5G45650.2 50.562 89 44 0 1 89 522 610 1.16e-26 102
Msa0512430 AT5G45650.1 50.562 89 44 0 1 89 522 610 1.16e-26 102
Msa0512430 AT1G01900.1 51.648 91 44 0 1 91 496 586 1.33e-26 102
Msa0512430 AT4G26330.2 48.515 101 51 1 1 100 450 550 7.23e-26 100
Msa0512430 AT4G26330.1 48.515 101 51 1 1 100 464 564 7.24e-26 100
Msa0512430 AT3G46850.1 48.315 89 44 1 1 89 473 559 2.87e-25 98.6
Msa0512430 AT5G03620.2 50.000 88 44 0 4 91 490 577 4.77e-25 98.2
Msa0512430 AT5G59190.1 44.792 96 49 2 4 96 430 524 1.25e-24 97.1
Msa0512430 AT4G00230.2 46.237 93 50 0 1 93 480 572 1.33e-24 96.7
Msa0512430 AT4G10540.1 56.180 89 32 2 1 89 504 585 2.78e-24 95.9
Msa0512430 AT5G03620.1 50.000 86 43 0 4 89 490 575 4.13e-24 95.5
Msa0512430 AT4G10550.1 54.348 92 34 2 1 92 508 591 4.93e-24 95.1
Msa0512430 AT4G00230.1 47.253 91 48 0 1 91 480 570 5.21e-24 95.1
Msa0512430 AT4G10550.4 54.348 92 34 2 1 92 452 535 6.49e-24 94.7
Msa0512430 AT4G10550.2 54.348 92 34 2 1 92 452 535 6.49e-24 94.7
Msa0512430 AT4G10550.3 54.348 92 34 2 1 92 524 607 6.67e-24 94.7
Msa0512430 AT4G21650.1 55.056 89 33 2 1 89 500 581 7.19e-24 94.7
Msa0512430 AT5G59130.4 51.163 86 39 1 4 89 468 550 4.16e-23 92.4
Msa0512430 AT5G59130.1 51.163 86 39 1 4 89 464 546 4.24e-23 92.4
Msa0512430 AT5G59130.2 51.163 86 39 1 4 89 458 540 4.76e-23 92.4
Msa0512430 AT5G59130.3 51.163 86 39 1 4 89 429 511 5.03e-23 92.4
Msa0512430 AT5G67090.1 49.438 89 45 0 1 89 473 561 1.14e-22 91.3
Msa0512430 AT1G20160.1 48.315 89 45 1 1 89 491 578 1.23e-22 91.3
Msa0512430 AT1G20160.2 48.315 89 45 1 1 89 452 539 1.25e-22 91.3
Msa0512430 AT1G32950.1 53.933 89 34 2 1 89 502 583 2.18e-22 90.5
Msa0512430 AT1G32950.2 53.933 89 34 2 1 89 451 532 2.53e-22 90.5
Msa0512430 AT4G10520.1 48.913 92 40 2 1 92 485 569 3.24e-22 90.1
Msa0512430 AT4G21630.1 52.809 89 35 2 1 89 493 574 4.47e-22 89.7
Msa0512430 AT1G32970.1 50.000 92 39 2 1 92 463 547 5.20e-22 89.4
Msa0512430 AT4G10510.1 55.056 89 33 2 1 89 494 575 1.03e-21 88.6
Msa0512430 AT4G10510.4 55.056 89 33 2 1 89 450 531 1.16e-21 88.6
Msa0512430 AT4G10510.3 55.056 89 33 2 1 89 506 587 1.21e-21 88.6
Msa0512430 AT4G10510.2 55.056 89 33 2 1 89 435 516 1.26e-21 88.6
Msa0512430 AT5G11940.1 48.315 89 39 1 1 89 491 572 1.79e-21 87.8
Msa0512430 AT4G21640.1 52.809 89 35 2 1 89 467 548 5.80e-21 86.7
Msa0512430 AT1G20150.1 52.326 86 40 1 4 89 498 582 8.93e-21 85.9
Msa0512430 AT1G32960.1 52.326 86 34 2 4 89 509 587 1.51e-20 85.5
Msa0512430 AT1G66220.1 47.191 89 33 1 4 92 495 569 1.55e-20 85.1
Msa0512430 AT4G21326.1 48.315 89 39 1 4 92 431 512 9.49e-20 83.2
Msa0512430 AT1G66210.1 50.562 89 32 2 1 89 495 571 2.43e-19 82.0
Msa0512430 AT2G39850.1 43.434 99 45 4 1 92 491 585 2.55e-19 81.6
Msa0512430 AT5G45640.1 47.222 72 38 0 19 90 502 573 3.31e-19 81.6
Msa0512430 AT2G19170.1 47.368 95 40 3 1 89 538 628 6.26e-19 80.9
Msa0512430 AT2G19170.2 47.368 95 40 3 1 89 538 628 6.26e-19 80.9
Msa0512430 AT1G32940.3 51.111 90 37 1 1 90 503 585 6.36e-19 80.5
Msa0512430 AT4G30020.3 45.745 94 43 2 1 89 539 629 1.35e-18 79.7
Msa0512430 AT4G30020.1 45.745 94 43 2 1 89 539 629 1.35e-18 79.7
Msa0512430 AT4G30020.4 45.745 94 43 2 1 89 539 629 1.35e-18 79.7
Msa0512430 AT4G30020.2 45.745 94 43 2 1 89 539 629 1.35e-18 79.7
Msa0512430 AT1G32940.1 50.562 89 37 1 1 89 503 584 4.86e-18 78.2
Msa0512430 AT1G32940.4 50.562 89 37 1 1 89 452 533 5.43e-18 78.2
Msa0512430 AT1G32940.2 50.562 89 37 1 1 89 452 533 5.43e-18 78.2
Msa0512430 AT4G21323.1 43.182 88 41 1 5 92 537 615 3.95e-16 72.8
Msa0512430 AT1G62340.1 43.750 96 42 4 4 92 563 653 1.12e-14 68.6
Msa0512430 AT4G15040.2 37.931 87 53 1 4 89 426 512 1.32e-14 68.6
Msa0512430 AT4G15040.1 37.931 87 53 1 4 89 426 512 1.32e-14 68.6
Msa0512430 AT1G30600.1 38.462 91 48 2 4 89 554 641 1.09e-13 65.9
Msa0512430 AT5G44530.2 35.106 94 47 3 4 89 564 651 4.81e-13 63.9
Msa0512430 AT5G44530.1 35.106 94 47 3 4 89 564 651 5.24e-13 63.9
Msa0512430 AT4G10530.1 38.043 92 37 1 1 92 489 560 1.84e-12 62.4
Msa0512430 AT4G20430.3 35.165 91 51 2 4 89 579 666 7.47e-12 60.5
Msa0512430 AT4G20430.1 35.165 91 51 2 4 89 579 666 7.47e-12 60.5
Msa0512430 AT4G20430.2 35.165 91 51 2 4 89 555 642 7.83e-12 60.5

Find 102 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGCAAAATTTGATAATTT+TGG 0.086768 3_4:+62181377 Msa0512430:five_prime_UTR
GCATCTGTTGCTTTAATAAT+TGG 0.089925 3_4:-62182121 None:intergenic
TAAAGCAACAGATGCTAAAT+TGG 0.221704 3_4:+62182129 Msa0512430:five_prime_UTR
TGAGAACCTTGTATCCTTCT+TGG 0.224032 3_4:+62182962 Msa0512430:CDS
ATTGTTGTTTATTTGGAAAT+TGG 0.236564 3_4:+62181601 Msa0512430:five_prime_UTR
TGCACTAGTTATGTTCTTCT+TGG 0.253291 3_4:+62181869 Msa0512430:five_prime_UTR
GTTGTTGTTGCTTGCTCTGC+TGG 0.279959 3_4:+62181764 Msa0512430:five_prime_UTR
ATCTCGGGTACAATGGTATT+TGG 0.284686 3_4:-62182687 None:intergenic
CCTCACATTTCGGGAATTGC+AGG 0.302985 3_4:+62182934 Msa0512430:CDS
TGACTCTCAATTATCTTGTT+TGG 0.307210 3_4:+62182045 Msa0512430:five_prime_UTR
TGTGATCCAGAGTCCCATTC+TGG 0.311076 3_4:-62182281 None:intergenic
AGTCTGAAGTTGAGATTTCT+TGG 0.315236 3_4:-62183072 None:intergenic
GTTTATTTGGAAATTGGTTT+TGG 0.327450 3_4:+62181607 Msa0512430:five_prime_UTR
TACAATGGTATTTGGCCCTT+TGG 0.331318 3_4:-62182679 None:intergenic
AAATCATTTCATAAATATTC+CGG 0.336856 3_4:+62181723 Msa0512430:five_prime_UTR
ATGTCAAGCCCTCACATTTC+GGG 0.340640 3_4:+62182925 Msa0512430:CDS
CATGTCAAGCCCTCACATTT+CGG 0.341153 3_4:+62182924 Msa0512430:CDS
ATTTCCACTATTGTTATCAT+TGG 0.342216 3_4:-62182397 None:intergenic
GCTTGCTCTGCTGGCAATGA+TGG 0.343896 3_4:+62181773 Msa0512430:five_prime_UTR
CCTTATCCACTCCTCCATTC+AGG 0.352074 3_4:-62182332 None:intergenic
TTTCTATCAACCAATGTGAT+TGG 0.355031 3_4:-62181549 None:intergenic
GGAAGAACAGAAAGCCAATT+GGG 0.382375 3_4:-62181501 None:intergenic
CATCTGTTGCTTTAATAATT+GGG 0.387808 3_4:-62182120 None:intergenic
TTACTGTAATTTCTATCAAT+AGG 0.388983 3_4:+62181971 Msa0512430:five_prime_UTR
TTGTCGATCTCTTCATTAGT+TGG 0.405128 3_4:-62182865 None:intergenic
ACACCTGGTGCTGTGATATC+AGG 0.406349 3_4:-62182808 None:intergenic
ACCCAGAAAAGCTCAGTTCA+TGG 0.406753 3_4:+62181358 Msa0512430:five_prime_UTR
TGGCAACGGTTTAAGCTTCA+AGG 0.407648 3_4:+62181889 Msa0512430:five_prime_UTR
CTTGCCAATGATAACAATAG+TGG 0.413339 3_4:+62182393 Msa0512430:five_prime_UTR
TTTGATGCAGTAGCCTCATT+TGG 0.413957 3_4:-62181797 None:intergenic
TCTTGTTTGGTTCAATCAAC+GGG 0.414439 3_4:+62182058 Msa0512430:five_prime_UTR
AATATATCATCAAAAGAAGT+TGG 0.416216 3_4:-62181935 None:intergenic
TGATCAAGAATGAGATTTGT+GGG 0.416911 3_4:-62181301 None:intergenic
TTCTATCAACCAATGTGATT+GGG 0.424736 3_4:-62181548 None:intergenic
TCAAAGAGAAGTTGATCAAA+TGG 0.426603 3_4:+62183094 Msa0512430:three_prime_UTR
CAACAACAATATTTGTAAAC+CGG 0.431164 3_4:-62181742 None:intergenic
GAGAAATTTATGTTAGAAGC+AGG 0.435055 3_4:-62182447 None:intergenic
TGCAGCGAGCTTTGCCAGAA+TGG 0.435817 3_4:+62182267 Msa0512430:intron
CTTGTATCCTTCTTGGAGTC+CGG 0.441288 3_4:+62182969 Msa0512430:CDS
GAATGAGATTTGTGGGATTG+AGG 0.442758 3_4:-62181294 None:intergenic
TGAGTAAGACAAATTGAATT+CGG 0.461464 3_4:-62182891 None:intergenic
GTCTGAAGTTGAGATTTCTT+GGG 0.461732 3_4:-62183071 None:intergenic
GATTAACACCTTTAGAATCT+CGG 0.462819 3_4:-62182703 None:intergenic
ATCTTGTTTGGTTCAATCAA+CGG 0.466097 3_4:+62182057 Msa0512430:five_prime_UTR
AATTAGAATAGTTTGAAAAG+TGG 0.469091 3_4:-62183128 None:intergenic
AGGAAGAACAGAAAGCCAAT+TGG 0.469166 3_4:-62181502 None:intergenic
TTTGTGGGATTGAGGAATTG+AGG 0.470007 3_4:-62181286 None:intergenic
CCTGAATGGAGGAGTGGATA+AGG 0.471847 3_4:+62182332 Msa0512430:five_prime_UTR
GAATTGGTTGTTGGAGATGA+AGG 0.478589 3_4:+62181629 Msa0512430:five_prime_UTR
TCGAAAAGAGAAGAATGAAA+AGG 0.479236 3_4:+62181656 Msa0512430:five_prime_UTR
TTGATCAAGAATGAGATTTG+TGG 0.480475 3_4:-62181302 None:intergenic
AAAATAGTAGTGTGCCTGAA+TGG 0.485193 3_4:+62182318 Msa0512430:five_prime_UTR
GCAGCGAGCTTTGCCAGAAT+GGG 0.489122 3_4:+62182268 Msa0512430:intron
ATTAACACCTTTAGAATCTC+GGG 0.499143 3_4:-62182702 None:intergenic
GCACTCTCTATCCATTGTGC+TGG 0.502204 3_4:-62181849 None:intergenic
GGATGAAAATATTGCCATGA+TGG 0.505910 3_4:-62182658 None:intergenic
CACTATTGTTATCATTGGCA+AGG 0.506923 3_4:-62182392 None:intergenic
AAATTGAGATACCTACCAAA+TGG 0.508336 3_4:+62181234 Msa0512430:five_prime_UTR
CAGCCTGATATCACAGCACC+AGG 0.512049 3_4:+62182805 Msa0512430:intron
TCTAACATAAATTTCTCTGA+TGG 0.516359 3_4:+62182453 Msa0512430:five_prime_UTR
CTGCATCAAATCTAGCTCCT+TGG 0.516497 3_4:+62181810 Msa0512430:five_prime_UTR
CTGAATGGAGGAGTGGATAA+GGG 0.525356 3_4:+62182333 Msa0512430:five_prime_UTR
GCTCTTATAGCTGGTGCTGT+AGG 0.530131 3_4:+62182363 Msa0512430:five_prime_UTR
AGTTATGTTCTTCTTGGCAA+CGG 0.530911 3_4:+62181875 Msa0512430:five_prime_UTR
AAGGATACAAGGTTCTCAAA+AGG 0.532636 3_4:-62182957 None:intergenic
GGAGAACAAGCTCTTATAGC+TGG 0.537634 3_4:+62182354 Msa0512430:five_prime_UTR
ATTCAATTTGTCTTACTCAC+CGG 0.545243 3_4:+62182895 Msa0512430:CDS
GCTTTGCCAGAATGGGACTC+TGG 0.545631 3_4:+62182275 Msa0512430:five_prime_UTR
CATTGTACCCGAGATTCTAA+AGG 0.548172 3_4:+62182695 Msa0512430:CDS
AGAATAGTTTGAAAAGTGGA+AGG 0.552146 3_4:-62183124 None:intergenic
TGGCTCTTCAGCTTCAGTGA+AGG 0.552957 3_4:-62182845 None:intergenic
GCTCCTTGGTATATCACAGT+TGG 0.557076 3_4:+62181824 Msa0512430:five_prime_UTR
GATGAAAATATTGCCATGAT+GGG 0.560543 3_4:-62182657 None:intergenic
ATTGTTATTCCCAATCACAT+TGG 0.561112 3_4:+62181539 Msa0512430:five_prime_UTR
TATAGCTGGTGCTGTAGGAG+TGG 0.566698 3_4:+62182368 Msa0512430:five_prime_UTR
ATAGCAGATTTAATAGCAGC+CGG 0.569981 3_4:-62182988 None:intergenic
CAAGAGTTTCTTCTTACCTG+TGG 0.573388 3_4:-62183016 None:intergenic
CGGACTCCAAGAAGGATACA+AGG 0.588458 3_4:-62182968 None:intergenic
CTTTAGAATCTCGGGTACAA+TGG 0.591821 3_4:-62182694 None:intergenic
AAATCTGCTATCATGACCAC+AGG 0.593204 3_4:+62183000 Msa0512430:CDS
CGAAATGTGAGGGCTTGACA+TGG 0.595430 3_4:-62182923 None:intergenic
AGGGCTTGACATGGATGTGC+CGG 0.596264 3_4:-62182914 None:intergenic
CTGCAATTCCCGAAATGTGA+GGG 0.596326 3_4:-62182933 None:intergenic
TGGCAATGATGGACCAAATG+AGG 0.596925 3_4:+62181784 Msa0512430:five_prime_UTR
CACAGTTGGTGCCAGCACAA+TGG 0.602894 3_4:+62181838 Msa0512430:five_prime_UTR
ATAGCAGCCGGACTCCAAGA+AGG 0.603386 3_4:-62182976 None:intergenic
TCTGGATCACAAGAAGGTGA+AGG 0.614201 3_4:+62182293 Msa0512430:five_prime_UTR
TGGGACTCTGGATCACAAGA+AGG 0.633879 3_4:+62182287 Msa0512430:five_prime_UTR
CTGGATCACAAGAAGGTGAA+GGG 0.633941 3_4:+62182294 Msa0512430:five_prime_UTR
GCTGCTATAACCGACACACC+TGG 0.638678 3_4:-62182823 None:intergenic
GAAGAACAGAAAGCCAATTG+GGG 0.645538 3_4:-62181500 None:intergenic
TTAGAAGCAGGAAGAACATG+AGG 0.651996 3_4:-62182435 None:intergenic
ATAGTAGTGTGCCTGAATGG+AGG 0.653182 3_4:+62182321 Msa0512430:five_prime_UTR
GGATGTGTAATATAAGCCAC+TGG 0.654484 3_4:-62182606 None:intergenic
CTTGTTTGGTTCAATCAACG+GGG 0.655523 3_4:+62182059 Msa0512430:five_prime_UTR
TATCACAGCACCAGGTGTGT+CGG 0.657844 3_4:+62182813 Msa0512430:CDS
TGAAAATATTGCCATGATGG+GGG 0.660947 3_4:-62182655 None:intergenic
CCTGCAATTCCCGAAATGTG+AGG 0.663023 3_4:-62182934 None:intergenic
ATGAAAATATTGCCATGATG+GGG 0.674957 3_4:-62182656 None:intergenic
AGTGTGCCTGAATGGAGGAG+TGG 0.692602 3_4:+62182326 Msa0512430:five_prime_UTR
GCACCAACTGTGATATACCA+AGG 0.694138 3_4:-62181827 None:intergenic
TTGTTTGGTTCAATCAACGG+GGG 0.709692 3_4:+62182060 Msa0512430:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAGTTTTTCAATTAAAAAT+TGG + chr3_4:62181419-62181438 Msa0512430:five_prime_UTR 10.0%
!!! ATTTTTAATTGAAAACAAAA+AGG - chr3_4:62181446-62181465 None:intergenic 10.0%
!!! TTTTTGTTTTCAATTAAAAA+TGG + chr3_4:62181445-62181464 Msa0512430:five_prime_UTR 10.0%
!! ATTCATTATTACTAAAAATT+TGG - chr3_4:62181575-62181594 None:intergenic 10.0%
!!! TAAAAAAATTGTTGTTTATT+TGG + chr3_4:62181594-62181613 Msa0512430:five_prime_UTR 10.0%
!!! ACTAATGATATTATATTTTT+TGG - chr3_4:62182184-62182203 None:intergenic 10.0%
!!! TTAGTTTTTCAATTAAAAAT+TGG + chr3_4:62181419-62181438 Msa0512430:five_prime_UTR 10.0%
!!! ATTTTTAATTGAAAACAAAA+AGG - chr3_4:62181446-62181465 None:intergenic 10.0%
!!! TTTTTGTTTTCAATTAAAAA+TGG + chr3_4:62181445-62181464 Msa0512430:five_prime_UTR 10.0%
!! ATTCATTATTACTAAAAATT+TGG - chr3_4:62181575-62181594 None:intergenic 10.0%
!!! TAAAAAAATTGTTGTTTATT+TGG + chr3_4:62181594-62181613 Msa0512430:five_prime_UTR 10.0%
!!! ACTAATGATATTATATTTTT+TGG - chr3_4:62182184-62182203 None:intergenic 10.0%
!!! TTTTCAATTAAAAATGGATT+AGG + chr3_4:62181451-62181470 Msa0512430:five_prime_UTR 15.0%
!! AAATCATTTCATAAATATTC+CGG + chr3_4:62181723-62181742 Msa0512430:five_prime_UTR 15.0%
!!! TTTTCAATTAAAAATGGATT+AGG + chr3_4:62181451-62181470 Msa0512430:five_prime_UTR 15.0%
!! AAATCATTTCATAAATATTC+CGG + chr3_4:62181723-62181742 Msa0512430:five_prime_UTR 15.0%
!!! ATCTCAATTTTAATTTTTCC+CGG - chr3_4:62181224-62181243 None:intergenic 20.0%
!!! GAATTTTTATGTTATCCATT+TGG - chr3_4:62181252-62181271 None:intergenic 20.0%
!!! ATGGCAAAATTTGATAATTT+TGG + chr3_4:62181377-62181396 Msa0512430:five_prime_UTR 20.0%
!!! TTGATAATTTTGGATATAGA+AGG + chr3_4:62181387-62181406 Msa0512430:five_prime_UTR 20.0%
!! AACAATATGTAAGAGAAAAA+AGG - chr3_4:62181525-62181544 None:intergenic 20.0%
!!! ATTGTTGTTTATTTGGAAAT+TGG + chr3_4:62181601-62181620 Msa0512430:five_prime_UTR 20.0%
!! AATATATCATCAAAAGAAGT+TGG - chr3_4:62181938-62181957 None:intergenic 20.0%
!! TTACTGTAATTTCTATCAAT+AGG + chr3_4:62181971-62181990 Msa0512430:five_prime_UTR 20.0%
!! AATTAGAATAGTTTGAAAAG+TGG - chr3_4:62183131-62183150 None:intergenic 20.0%
!!! ATCTCAATTTTAATTTTTCC+CGG - chr3_4:62181224-62181243 None:intergenic 20.0%
!!! GAATTTTTATGTTATCCATT+TGG - chr3_4:62181252-62181271 None:intergenic 20.0%
!!! ATGGCAAAATTTGATAATTT+TGG + chr3_4:62181377-62181396 Msa0512430:five_prime_UTR 20.0%
!!! TTGATAATTTTGGATATAGA+AGG + chr3_4:62181387-62181406 Msa0512430:five_prime_UTR 20.0%
!! AACAATATGTAAGAGAAAAA+AGG - chr3_4:62181525-62181544 None:intergenic 20.0%
!!! ATTGTTGTTTATTTGGAAAT+TGG + chr3_4:62181601-62181620 Msa0512430:five_prime_UTR 20.0%
!! AATATATCATCAAAAGAAGT+TGG - chr3_4:62181938-62181957 None:intergenic 20.0%
!! TTACTGTAATTTCTATCAAT+AGG + chr3_4:62181971-62181990 Msa0512430:five_prime_UTR 20.0%
!! AATTAGAATAGTTTGAAAAG+TGG - chr3_4:62183131-62183150 None:intergenic 20.0%
!! TTTTATGTTATCCATTTGGT+AGG - chr3_4:62181248-62181267 None:intergenic 25.0%
!! TTTTGGATATAGAAGGAAAA+AGG + chr3_4:62181394-62181413 Msa0512430:five_prime_UTR 25.0%
! TTTGGATATAGAAGGAAAAA+GGG + chr3_4:62181395-62181414 Msa0512430:five_prime_UTR 25.0%
!!! GTTTATTTGGAAATTGGTTT+TGG + chr3_4:62181607-62181626 Msa0512430:five_prime_UTR 25.0%
!! ATGCATTTTGTTAGAATTTC+TGG + chr3_4:62181700-62181719 Msa0512430:five_prime_UTR 25.0%
! CAACAACAATATTTGTAAAC+CGG - chr3_4:62181745-62181764 None:intergenic 25.0%
!! ATAATTGGGTAGAATTTTTG+TGG - chr3_4:62182109-62182128 None:intergenic 25.0%
!!! CATCTGTTGCTTTAATAATT+GGG - chr3_4:62182123-62182142 None:intergenic 25.0%
! TCAATTAGATCAAGTTACAT+TGG - chr3_4:62182243-62182262 None:intergenic 25.0%
! ATTTCCACTATTGTTATCAT+TGG - chr3_4:62182400-62182419 None:intergenic 25.0%
! TCTAACATAAATTTCTCTGA+TGG + chr3_4:62182453-62182472 Msa0512430:five_prime_UTR 25.0%
!!! TTAGTATGCAATTTTGTTGT+TGG - chr3_4:62182630-62182649 None:intergenic 25.0%
! ACATAACAATAGATTACAAG+AGG - chr3_4:62182753-62182772 None:intergenic 25.0%
! TGAGTAAGACAAATTGAATT+CGG - chr3_4:62182894-62182913 None:intergenic 25.0%
!! TTTTATGTTATCCATTTGGT+AGG - chr3_4:62181248-62181267 None:intergenic 25.0%
!! TTTTGGATATAGAAGGAAAA+AGG + chr3_4:62181394-62181413 Msa0512430:five_prime_UTR 25.0%
! TTTGGATATAGAAGGAAAAA+GGG + chr3_4:62181395-62181414 Msa0512430:five_prime_UTR 25.0%
!!! GTTTATTTGGAAATTGGTTT+TGG + chr3_4:62181607-62181626 Msa0512430:five_prime_UTR 25.0%
!! ATGCATTTTGTTAGAATTTC+TGG + chr3_4:62181700-62181719 Msa0512430:five_prime_UTR 25.0%
! CAACAACAATATTTGTAAAC+CGG - chr3_4:62181745-62181764 None:intergenic 25.0%
!! ATAATTGGGTAGAATTTTTG+TGG - chr3_4:62182109-62182128 None:intergenic 25.0%
!!! CATCTGTTGCTTTAATAATT+GGG - chr3_4:62182123-62182142 None:intergenic 25.0%
! TCAATTAGATCAAGTTACAT+TGG - chr3_4:62182243-62182262 None:intergenic 25.0%
! ATTTCCACTATTGTTATCAT+TGG - chr3_4:62182400-62182419 None:intergenic 25.0%
! TCTAACATAAATTTCTCTGA+TGG + chr3_4:62182453-62182472 Msa0512430:five_prime_UTR 25.0%
!!! TTAGTATGCAATTTTGTTGT+TGG - chr3_4:62182630-62182649 None:intergenic 25.0%
! ACATAACAATAGATTACAAG+AGG - chr3_4:62182753-62182772 None:intergenic 25.0%
! TGAGTAAGACAAATTGAATT+CGG - chr3_4:62182894-62182913 None:intergenic 25.0%
AAATTGAGATACCTACCAAA+TGG + chr3_4:62181234-62181253 Msa0512430:five_prime_UTR 30.0%
TGATCAAGAATGAGATTTGT+GGG - chr3_4:62181304-62181323 None:intergenic 30.0%
TTGATCAAGAATGAGATTTG+TGG - chr3_4:62181305-62181324 None:intergenic 30.0%
TTGGATATAGAAGGAAAAAG+GGG + chr3_4:62181396-62181415 Msa0512430:five_prime_UTR 30.0%
!!! TTCTTTTTTAACACCCCAAT+TGG + chr3_4:62181487-62181506 Msa0512430:five_prime_UTR 30.0%
! ATTGTTATTCCCAATCACAT+TGG + chr3_4:62181539-62181558 Msa0512430:five_prime_UTR 30.0%
TTCTATCAACCAATGTGATT+GGG - chr3_4:62181551-62181570 None:intergenic 30.0%
TTTCTATCAACCAATGTGAT+TGG - chr3_4:62181552-62181571 None:intergenic 30.0%
!!! TTGGAAATTGGTTTTGGAAT+TGG + chr3_4:62181613-62181632 Msa0512430:five_prime_UTR 30.0%
TCGAAAAGAGAAGAATGAAA+AGG + chr3_4:62181656-62181675 Msa0512430:five_prime_UTR 30.0%
TGACTCTCAATTATCTTGTT+TGG + chr3_4:62182045-62182064 Msa0512430:five_prime_UTR 30.0%
! ATCTTGTTTGGTTCAATCAA+CGG + chr3_4:62182057-62182076 Msa0512430:five_prime_UTR 30.0%
!! GCATCTGTTGCTTTAATAAT+TGG - chr3_4:62182124-62182143 None:intergenic 30.0%
TAAAGCAACAGATGCTAAAT+TGG + chr3_4:62182129-62182148 Msa0512430:five_prime_UTR 30.0%
GAGAAATTTATGTTAGAAGC+AGG - chr3_4:62182450-62182469 None:intergenic 30.0%
ACACTTAAAACTTGATCGTT+TGG + chr3_4:62182566-62182585 Msa0512430:intron 30.0%
! ATCGTTTGGACTTAACTTTT+AGG + chr3_4:62182580-62182599 Msa0512430:intron 30.0%
ATGAAAATATTGCCATGATG+GGG - chr3_4:62182659-62182678 None:intergenic 30.0%
GATGAAAATATTGCCATGAT+GGG - chr3_4:62182660-62182679 None:intergenic 30.0%
! ATGGCAATATTTTCATCCAA+AGG + chr3_4:62182663-62182682 Msa0512430:CDS 30.0%
! TGGCAATATTTTCATCCAAA+GGG + chr3_4:62182664-62182683 Msa0512430:CDS 30.0%
!! ATTAACACCTTTAGAATCTC+GGG - chr3_4:62182705-62182724 None:intergenic 30.0%
!! GATTAACACCTTTAGAATCT+CGG - chr3_4:62182706-62182725 None:intergenic 30.0%
ATTCAATTTGTCTTACTCAC+CGG + chr3_4:62182895-62182914 Msa0512430:CDS 30.0%
! TCAAAGAGAAGTTGATCAAA+TGG + chr3_4:62183094-62183113 Msa0512430:three_prime_UTR 30.0%
AGAATAGTTTGAAAAGTGGA+AGG - chr3_4:62183127-62183146 None:intergenic 30.0%
AAATTGAGATACCTACCAAA+TGG + chr3_4:62181234-62181253 Msa0512430:five_prime_UTR 30.0%
TGATCAAGAATGAGATTTGT+GGG - chr3_4:62181304-62181323 None:intergenic 30.0%
TTGATCAAGAATGAGATTTG+TGG - chr3_4:62181305-62181324 None:intergenic 30.0%
TTGGATATAGAAGGAAAAAG+GGG + chr3_4:62181396-62181415 Msa0512430:five_prime_UTR 30.0%
!!! TTCTTTTTTAACACCCCAAT+TGG + chr3_4:62181487-62181506 Msa0512430:five_prime_UTR 30.0%
! ATTGTTATTCCCAATCACAT+TGG + chr3_4:62181539-62181558 Msa0512430:five_prime_UTR 30.0%
TTCTATCAACCAATGTGATT+GGG - chr3_4:62181551-62181570 None:intergenic 30.0%
TTTCTATCAACCAATGTGAT+TGG - chr3_4:62181552-62181571 None:intergenic 30.0%
!!! TTGGAAATTGGTTTTGGAAT+TGG + chr3_4:62181613-62181632 Msa0512430:five_prime_UTR 30.0%
TCGAAAAGAGAAGAATGAAA+AGG + chr3_4:62181656-62181675 Msa0512430:five_prime_UTR 30.0%
TGACTCTCAATTATCTTGTT+TGG + chr3_4:62182045-62182064 Msa0512430:five_prime_UTR 30.0%
! ATCTTGTTTGGTTCAATCAA+CGG + chr3_4:62182057-62182076 Msa0512430:five_prime_UTR 30.0%
!! GCATCTGTTGCTTTAATAAT+TGG - chr3_4:62182124-62182143 None:intergenic 30.0%
TAAAGCAACAGATGCTAAAT+TGG + chr3_4:62182129-62182148 Msa0512430:five_prime_UTR 30.0%
GAGAAATTTATGTTAGAAGC+AGG - chr3_4:62182450-62182469 None:intergenic 30.0%
ACACTTAAAACTTGATCGTT+TGG + chr3_4:62182566-62182585 Msa0512430:intron 30.0%
! ATCGTTTGGACTTAACTTTT+AGG + chr3_4:62182580-62182599 Msa0512430:intron 30.0%
ATGAAAATATTGCCATGATG+GGG - chr3_4:62182659-62182678 None:intergenic 30.0%
GATGAAAATATTGCCATGAT+GGG - chr3_4:62182660-62182679 None:intergenic 30.0%
! ATGGCAATATTTTCATCCAA+AGG + chr3_4:62182663-62182682 Msa0512430:CDS 30.0%
! TGGCAATATTTTCATCCAAA+GGG + chr3_4:62182664-62182683 Msa0512430:CDS 30.0%
!! ATTAACACCTTTAGAATCTC+GGG - chr3_4:62182705-62182724 None:intergenic 30.0%
!! GATTAACACCTTTAGAATCT+CGG - chr3_4:62182706-62182725 None:intergenic 30.0%
ATTCAATTTGTCTTACTCAC+CGG + chr3_4:62182895-62182914 Msa0512430:CDS 30.0%
! TCAAAGAGAAGTTGATCAAA+TGG + chr3_4:62183094-62183113 Msa0512430:three_prime_UTR 30.0%
AGAATAGTTTGAAAAGTGGA+AGG - chr3_4:62183127-62183146 None:intergenic 30.0%
!!! TTGGTTTTGGAATTGGTTGT+TGG + chr3_4:62181620-62181639 Msa0512430:five_prime_UTR 35.0%
TGCACTAGTTATGTTCTTCT+TGG + chr3_4:62181869-62181888 Msa0512430:five_prime_UTR 35.0%
AGTTATGTTCTTCTTGGCAA+CGG + chr3_4:62181875-62181894 Msa0512430:five_prime_UTR 35.0%
! TCTTGTTTGGTTCAATCAAC+GGG + chr3_4:62182058-62182077 Msa0512430:five_prime_UTR 35.0%
AAAATAGTAGTGTGCCTGAA+TGG + chr3_4:62182318-62182337 Msa0512430:five_prime_UTR 35.0%
CACTATTGTTATCATTGGCA+AGG - chr3_4:62182395-62182414 None:intergenic 35.0%
CTTGCCAATGATAACAATAG+TGG + chr3_4:62182393-62182412 Msa0512430:five_prime_UTR 35.0%
AGAAATCTAGCAGTCTAGTT+TGG + chr3_4:62182512-62182531 Msa0512430:intron 35.0%
TGAAAATATTGCCATGATGG+GGG - chr3_4:62182658-62182677 None:intergenic 35.0%
GGATGAAAATATTGCCATGA+TGG - chr3_4:62182661-62182680 None:intergenic 35.0%
TTGTCGATCTCTTCATTAGT+TGG - chr3_4:62182868-62182887 None:intergenic 35.0%
AAGGATACAAGGTTCTCAAA+AGG - chr3_4:62182960-62182979 None:intergenic 35.0%
ATAGCAGATTTAATAGCAGC+CGG - chr3_4:62182991-62183010 None:intergenic 35.0%
! GTCTGAAGTTGAGATTTCTT+GGG - chr3_4:62183074-62183093 None:intergenic 35.0%
! AGTCTGAAGTTGAGATTTCT+TGG - chr3_4:62183075-62183094 None:intergenic 35.0%
!!! TTGGTTTTGGAATTGGTTGT+TGG + chr3_4:62181620-62181639 Msa0512430:five_prime_UTR 35.0%
TGCACTAGTTATGTTCTTCT+TGG + chr3_4:62181869-62181888 Msa0512430:five_prime_UTR 35.0%
AGTTATGTTCTTCTTGGCAA+CGG + chr3_4:62181875-62181894 Msa0512430:five_prime_UTR 35.0%
! TCTTGTTTGGTTCAATCAAC+GGG + chr3_4:62182058-62182077 Msa0512430:five_prime_UTR 35.0%
AAAATAGTAGTGTGCCTGAA+TGG + chr3_4:62182318-62182337 Msa0512430:five_prime_UTR 35.0%
CACTATTGTTATCATTGGCA+AGG - chr3_4:62182395-62182414 None:intergenic 35.0%
CTTGCCAATGATAACAATAG+TGG + chr3_4:62182393-62182412 Msa0512430:five_prime_UTR 35.0%
AGAAATCTAGCAGTCTAGTT+TGG + chr3_4:62182512-62182531 Msa0512430:intron 35.0%
TGAAAATATTGCCATGATGG+GGG - chr3_4:62182658-62182677 None:intergenic 35.0%
GGATGAAAATATTGCCATGA+TGG - chr3_4:62182661-62182680 None:intergenic 35.0%
TTGTCGATCTCTTCATTAGT+TGG - chr3_4:62182868-62182887 None:intergenic 35.0%
AAGGATACAAGGTTCTCAAA+AGG - chr3_4:62182960-62182979 None:intergenic 35.0%
ATAGCAGATTTAATAGCAGC+CGG - chr3_4:62182991-62183010 None:intergenic 35.0%
! GTCTGAAGTTGAGATTTCTT+GGG - chr3_4:62183074-62183093 None:intergenic 35.0%
! AGTCTGAAGTTGAGATTTCT+TGG - chr3_4:62183075-62183094 None:intergenic 35.0%
TTTGTGGGATTGAGGAATTG+AGG - chr3_4:62181289-62181308 None:intergenic 40.0%
GAATGAGATTTGTGGGATTG+AGG - chr3_4:62181297-62181316 None:intergenic 40.0%
GAAGAACAGAAAGCCAATTG+GGG - chr3_4:62181503-62181522 None:intergenic 40.0%
GGAAGAACAGAAAGCCAATT+GGG - chr3_4:62181504-62181523 None:intergenic 40.0%
AGGAAGAACAGAAAGCCAAT+TGG - chr3_4:62181505-62181524 None:intergenic 40.0%
GAATTGGTTGTTGGAGATGA+AGG + chr3_4:62181629-62181648 Msa0512430:five_prime_UTR 40.0%
TTTGATGCAGTAGCCTCATT+TGG - chr3_4:62181800-62181819 None:intergenic 40.0%
! CTTGTTTGGTTCAATCAACG+GGG + chr3_4:62182059-62182078 Msa0512430:five_prime_UTR 40.0%
! TTGTTTGGTTCAATCAACGG+GGG + chr3_4:62182060-62182079 Msa0512430:five_prime_UTR 40.0%
TTAGAAGCAGGAAGAACATG+AGG - chr3_4:62182438-62182457 None:intergenic 40.0%
!! CTTAACTTTTAGGTCTCCAG+TGG + chr3_4:62182590-62182609 Msa0512430:intron 40.0%
GGATGTGTAATATAAGCCAC+TGG - chr3_4:62182609-62182628 None:intergenic 40.0%
TACAATGGTATTTGGCCCTT+TGG - chr3_4:62182682-62182701 None:intergenic 40.0%
ATCTCGGGTACAATGGTATT+TGG - chr3_4:62182690-62182709 None:intergenic 40.0%
!! CTTTAGAATCTCGGGTACAA+TGG - chr3_4:62182697-62182716 None:intergenic 40.0%
CATTGTACCCGAGATTCTAA+AGG + chr3_4:62182695-62182714 Msa0512430:CDS 40.0%
TGAGAACCTTGTATCCTTCT+TGG + chr3_4:62182962-62182981 Msa0512430:CDS 40.0%
AAATCTGCTATCATGACCAC+AGG + chr3_4:62183000-62183019 Msa0512430:CDS 40.0%
CAAGAGTTTCTTCTTACCTG+TGG - chr3_4:62183019-62183038 None:intergenic 40.0%
TTTGTGGGATTGAGGAATTG+AGG - chr3_4:62181289-62181308 None:intergenic 40.0%
GAATGAGATTTGTGGGATTG+AGG - chr3_4:62181297-62181316 None:intergenic 40.0%
GAAGAACAGAAAGCCAATTG+GGG - chr3_4:62181503-62181522 None:intergenic 40.0%
GGAAGAACAGAAAGCCAATT+GGG - chr3_4:62181504-62181523 None:intergenic 40.0%
AGGAAGAACAGAAAGCCAAT+TGG - chr3_4:62181505-62181524 None:intergenic 40.0%
GAATTGGTTGTTGGAGATGA+AGG + chr3_4:62181629-62181648 Msa0512430:five_prime_UTR 40.0%
TTTGATGCAGTAGCCTCATT+TGG - chr3_4:62181800-62181819 None:intergenic 40.0%
! CTTGTTTGGTTCAATCAACG+GGG + chr3_4:62182059-62182078 Msa0512430:five_prime_UTR 40.0%
! TTGTTTGGTTCAATCAACGG+GGG + chr3_4:62182060-62182079 Msa0512430:five_prime_UTR 40.0%
TTAGAAGCAGGAAGAACATG+AGG - chr3_4:62182438-62182457 None:intergenic 40.0%
!! CTTAACTTTTAGGTCTCCAG+TGG + chr3_4:62182590-62182609 Msa0512430:intron 40.0%
GGATGTGTAATATAAGCCAC+TGG - chr3_4:62182609-62182628 None:intergenic 40.0%
TACAATGGTATTTGGCCCTT+TGG - chr3_4:62182682-62182701 None:intergenic 40.0%
ATCTCGGGTACAATGGTATT+TGG - chr3_4:62182690-62182709 None:intergenic 40.0%
!! CTTTAGAATCTCGGGTACAA+TGG - chr3_4:62182697-62182716 None:intergenic 40.0%
CATTGTACCCGAGATTCTAA+AGG + chr3_4:62182695-62182714 Msa0512430:CDS 40.0%
TGAGAACCTTGTATCCTTCT+TGG + chr3_4:62182962-62182981 Msa0512430:CDS 40.0%
AAATCTGCTATCATGACCAC+AGG + chr3_4:62183000-62183019 Msa0512430:CDS 40.0%
CAAGAGTTTCTTCTTACCTG+TGG - chr3_4:62183019-62183038 None:intergenic 40.0%
ACCCAGAAAAGCTCAGTTCA+TGG + chr3_4:62181358-62181377 Msa0512430:five_prime_UTR 45.0%
! GCCATGAACTGAGCTTTTCT+GGG - chr3_4:62181362-62181381 None:intergenic 45.0%
! TGCCATGAACTGAGCTTTTC+TGG - chr3_4:62181363-62181382 None:intergenic 45.0%
!! TGGCAATGATGGACCAAATG+AGG + chr3_4:62181784-62181803 Msa0512430:five_prime_UTR 45.0%
! CTGCATCAAATCTAGCTCCT+TGG + chr3_4:62181810-62181829 Msa0512430:five_prime_UTR 45.0%
GCTCCTTGGTATATCACAGT+TGG + chr3_4:62181824-62181843 Msa0512430:five_prime_UTR 45.0%
GCACCAACTGTGATATACCA+AGG - chr3_4:62181830-62181849 None:intergenic 45.0%
TGGCAACGGTTTAAGCTTCA+AGG + chr3_4:62181889-62181908 Msa0512430:five_prime_UTR 45.0%
TCTGGATCACAAGAAGGTGA+AGG + chr3_4:62182293-62182312 Msa0512430:five_prime_UTR 45.0%
CTGGATCACAAGAAGGTGAA+GGG + chr3_4:62182294-62182313 Msa0512430:five_prime_UTR 45.0%
ATAGTAGTGTGCCTGAATGG+AGG + chr3_4:62182321-62182340 Msa0512430:five_prime_UTR 45.0%
CTGAATGGAGGAGTGGATAA+GGG + chr3_4:62182333-62182352 Msa0512430:five_prime_UTR 45.0%
GGAGAACAAGCTCTTATAGC+TGG + chr3_4:62182354-62182373 Msa0512430:five_prime_UTR 45.0%
! TCTAGCAGTCTAGTTTGGTG+TGG + chr3_4:62182517-62182536 Msa0512430:intron 45.0%
CATGTCAAGCCCTCACATTT+CGG + chr3_4:62182924-62182943 Msa0512430:CDS 45.0%
ATGTCAAGCCCTCACATTTC+GGG + chr3_4:62182925-62182944 Msa0512430:CDS 45.0%
CTGCAATTCCCGAAATGTGA+GGG - chr3_4:62182936-62182955 None:intergenic 45.0%
CTTGTATCCTTCTTGGAGTC+CGG + chr3_4:62182969-62182988 Msa0512430:CDS 45.0%
ACCCAGAAAAGCTCAGTTCA+TGG + chr3_4:62181358-62181377 Msa0512430:five_prime_UTR 45.0%
! GCCATGAACTGAGCTTTTCT+GGG - chr3_4:62181362-62181381 None:intergenic 45.0%
! TGCCATGAACTGAGCTTTTC+TGG - chr3_4:62181363-62181382 None:intergenic 45.0%
!! TGGCAATGATGGACCAAATG+AGG + chr3_4:62181784-62181803 Msa0512430:five_prime_UTR 45.0%
! CTGCATCAAATCTAGCTCCT+TGG + chr3_4:62181810-62181829 Msa0512430:five_prime_UTR 45.0%
GCTCCTTGGTATATCACAGT+TGG + chr3_4:62181824-62181843 Msa0512430:five_prime_UTR 45.0%
GCACCAACTGTGATATACCA+AGG - chr3_4:62181830-62181849 None:intergenic 45.0%
TGGCAACGGTTTAAGCTTCA+AGG + chr3_4:62181889-62181908 Msa0512430:five_prime_UTR 45.0%
TCTGGATCACAAGAAGGTGA+AGG + chr3_4:62182293-62182312 Msa0512430:five_prime_UTR 45.0%
CTGGATCACAAGAAGGTGAA+GGG + chr3_4:62182294-62182313 Msa0512430:five_prime_UTR 45.0%
ATAGTAGTGTGCCTGAATGG+AGG + chr3_4:62182321-62182340 Msa0512430:five_prime_UTR 45.0%
CTGAATGGAGGAGTGGATAA+GGG + chr3_4:62182333-62182352 Msa0512430:five_prime_UTR 45.0%
GGAGAACAAGCTCTTATAGC+TGG + chr3_4:62182354-62182373 Msa0512430:five_prime_UTR 45.0%
! TCTAGCAGTCTAGTTTGGTG+TGG + chr3_4:62182517-62182536 Msa0512430:intron 45.0%
CATGTCAAGCCCTCACATTT+CGG + chr3_4:62182924-62182943 Msa0512430:CDS 45.0%
ATGTCAAGCCCTCACATTTC+GGG + chr3_4:62182925-62182944 Msa0512430:CDS 45.0%
CTGCAATTCCCGAAATGTGA+GGG - chr3_4:62182936-62182955 None:intergenic 45.0%
CTTGTATCCTTCTTGGAGTC+CGG + chr3_4:62182969-62182988 Msa0512430:CDS 45.0%
! GTTGTTGTTGCTTGCTCTGC+TGG + chr3_4:62181764-62181783 Msa0512430:five_prime_UTR 50.0%
GCACTCTCTATCCATTGTGC+TGG - chr3_4:62181852-62181871 None:intergenic 50.0%
TGTGATCCAGAGTCCCATTC+TGG - chr3_4:62182284-62182303 None:intergenic 50.0%
TGGGACTCTGGATCACAAGA+AGG + chr3_4:62182287-62182306 Msa0512430:five_prime_UTR 50.0%
CCTTATCCACTCCTCCATTC+AGG - chr3_4:62182335-62182354 None:intergenic 50.0%
CCTGAATGGAGGAGTGGATA+AGG + chr3_4:62182332-62182351 Msa0512430:five_prime_UTR 50.0%
!! GCTCTTATAGCTGGTGCTGT+AGG + chr3_4:62182363-62182382 Msa0512430:five_prime_UTR 50.0%
!! TATAGCTGGTGCTGTAGGAG+TGG + chr3_4:62182368-62182387 Msa0512430:five_prime_UTR 50.0%
TACTAAACCAGCCCCCATCA+TGG + chr3_4:62182644-62182663 Msa0512430:exon 50.0%
! AATATTGCCATGATGGGGGC+TGG - chr3_4:62182654-62182673 None:intergenic 50.0%
!! ACACCTGGTGCTGTGATATC+AGG - chr3_4:62182811-62182830 None:intergenic 50.0%
TATCACAGCACCAGGTGTGT+CGG + chr3_4:62182813-62182832 Msa0512430:CDS 50.0%
TGGCTCTTCAGCTTCAGTGA+AGG - chr3_4:62182848-62182867 None:intergenic 50.0%
CGAAATGTGAGGGCTTGACA+TGG - chr3_4:62182926-62182945 None:intergenic 50.0%
CCTGCAATTCCCGAAATGTG+AGG - chr3_4:62182937-62182956 None:intergenic 50.0%
CCTCACATTTCGGGAATTGC+AGG + chr3_4:62182934-62182953 Msa0512430:CDS 50.0%
CGGACTCCAAGAAGGATACA+AGG - chr3_4:62182971-62182990 None:intergenic 50.0%
! GTTGTTGTTGCTTGCTCTGC+TGG + chr3_4:62181764-62181783 Msa0512430:five_prime_UTR 50.0%
GCACTCTCTATCCATTGTGC+TGG - chr3_4:62181852-62181871 None:intergenic 50.0%
TGTGATCCAGAGTCCCATTC+TGG - chr3_4:62182284-62182303 None:intergenic 50.0%
TGGGACTCTGGATCACAAGA+AGG + chr3_4:62182287-62182306 Msa0512430:five_prime_UTR 50.0%
CCTTATCCACTCCTCCATTC+AGG - chr3_4:62182335-62182354 None:intergenic 50.0%
CCTGAATGGAGGAGTGGATA+AGG + chr3_4:62182332-62182351 Msa0512430:five_prime_UTR 50.0%
!! GCTCTTATAGCTGGTGCTGT+AGG + chr3_4:62182363-62182382 Msa0512430:five_prime_UTR 50.0%
!! TATAGCTGGTGCTGTAGGAG+TGG + chr3_4:62182368-62182387 Msa0512430:five_prime_UTR 50.0%
TACTAAACCAGCCCCCATCA+TGG + chr3_4:62182644-62182663 Msa0512430:exon 50.0%
! AATATTGCCATGATGGGGGC+TGG - chr3_4:62182654-62182673 None:intergenic 50.0%
!! ACACCTGGTGCTGTGATATC+AGG - chr3_4:62182811-62182830 None:intergenic 50.0%
TATCACAGCACCAGGTGTGT+CGG + chr3_4:62182813-62182832 Msa0512430:CDS 50.0%
TGGCTCTTCAGCTTCAGTGA+AGG - chr3_4:62182848-62182867 None:intergenic 50.0%
CGAAATGTGAGGGCTTGACA+TGG - chr3_4:62182926-62182945 None:intergenic 50.0%
CCTGCAATTCCCGAAATGTG+AGG - chr3_4:62182937-62182956 None:intergenic 50.0%
CCTCACATTTCGGGAATTGC+AGG + chr3_4:62182934-62182953 Msa0512430:CDS 50.0%
CGGACTCCAAGAAGGATACA+AGG - chr3_4:62182971-62182990 None:intergenic 50.0%
GCTTGCTCTGCTGGCAATGA+TGG + chr3_4:62181773-62181792 Msa0512430:five_prime_UTR 55.0%
!! CACAGTTGGTGCCAGCACAA+TGG + chr3_4:62181838-62181857 Msa0512430:five_prime_UTR 55.0%
TGCAGCGAGCTTTGCCAGAA+TGG + chr3_4:62182267-62182286 Msa0512430:intron 55.0%
GCAGCGAGCTTTGCCAGAAT+GGG + chr3_4:62182268-62182287 Msa0512430:intron 55.0%
GCTTTGCCAGAATGGGACTC+TGG + chr3_4:62182275-62182294 Msa0512430:five_prime_UTR 55.0%
AGTGTGCCTGAATGGAGGAG+TGG + chr3_4:62182326-62182345 Msa0512430:five_prime_UTR 55.0%
CAGCCTGATATCACAGCACC+AGG + chr3_4:62182805-62182824 Msa0512430:intron 55.0%
GCTGCTATAACCGACACACC+TGG - chr3_4:62182826-62182845 None:intergenic 55.0%
AGGGCTTGACATGGATGTGC+CGG - chr3_4:62182917-62182936 None:intergenic 55.0%
ATAGCAGCCGGACTCCAAGA+AGG - chr3_4:62182979-62182998 None:intergenic 55.0%
GCTTGCTCTGCTGGCAATGA+TGG + chr3_4:62181773-62181792 Msa0512430:five_prime_UTR 55.0%
!! CACAGTTGGTGCCAGCACAA+TGG + chr3_4:62181838-62181857 Msa0512430:five_prime_UTR 55.0%
TGCAGCGAGCTTTGCCAGAA+TGG + chr3_4:62182267-62182286 Msa0512430:intron 55.0%
GCAGCGAGCTTTGCCAGAAT+GGG + chr3_4:62182268-62182287 Msa0512430:intron 55.0%
GCTTTGCCAGAATGGGACTC+TGG + chr3_4:62182275-62182294 Msa0512430:five_prime_UTR 55.0%
AGTGTGCCTGAATGGAGGAG+TGG + chr3_4:62182326-62182345 Msa0512430:five_prime_UTR 55.0%
CAGCCTGATATCACAGCACC+AGG + chr3_4:62182805-62182824 Msa0512430:intron 55.0%
GCTGCTATAACCGACACACC+TGG - chr3_4:62182826-62182845 None:intergenic 55.0%
AGGGCTTGACATGGATGTGC+CGG - chr3_4:62182917-62182936 None:intergenic 55.0%
ATAGCAGCCGGACTCCAAGA+AGG - chr3_4:62182979-62182998 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 62181210 62183196 62181210 ID=Msa0512430;Name=Msa0512430
chr3_4 mRNA 62181210 62183196 62181210 ID=Msa0512430-mRNA-1;Parent=Msa0512430;Name=Msa0512430-mRNA-1;_AED=0.36;_eAED=0.36;_QI=1262|1|1|1|0.66|0.75|4|128|104
chr3_4 exon 62181210 62182173 62181210 ID=Msa0512430-mRNA-1:exon:15381;Parent=Msa0512430-mRNA-1
chr3_4 exon 62182272 62182508 62182272 ID=Msa0512430-mRNA-1:exon:15382;Parent=Msa0512430-mRNA-1
chr3_4 exon 62182602 62182716 62182602 ID=Msa0512430-mRNA-1:exon:15383;Parent=Msa0512430-mRNA-1
chr3_4 exon 62182808 62183196 62182808 ID=Msa0512430-mRNA-1:exon:15384;Parent=Msa0512430-mRNA-1
chr3_4 five_prime_UTR 62181210 62182173 62181210 ID=Msa0512430-mRNA-1:five_prime_utr;Parent=Msa0512430-mRNA-1
chr3_4 five_prime_UTR 62182272 62182508 62182272 ID=Msa0512430-mRNA-1:five_prime_utr;Parent=Msa0512430-mRNA-1
chr3_4 five_prime_UTR 62182602 62182662 62182602 ID=Msa0512430-mRNA-1:five_prime_utr;Parent=Msa0512430-mRNA-1
chr3_4 CDS 62182663 62182716 62182663 ID=Msa0512430-mRNA-1:cds;Parent=Msa0512430-mRNA-1
chr3_4 CDS 62182808 62183068 62182808 ID=Msa0512430-mRNA-1:cds;Parent=Msa0512430-mRNA-1
chr3_4 three_prime_UTR 62183069 62183196 62183069 ID=Msa0512430-mRNA-1:three_prime_utr;Parent=Msa0512430-mRNA-1
Gene Sequence

>Msa0512430

ATGGCAATATTTTCATCCAAAGGGCCAAATACCATTGTACCCGAGATTCTAAAGCCTGATATCACAGCACCAGGTGTGTCGGTTATAGCAGCCTTCACTGAAGCTGAAGAGCCAACTAATGAAGAGATCGACAATCGCCGAATTCAATTTGTCTTACTCACCGGCACATCCATGTCAAGCCCTCACATTTCGGGAATTGCAGGCCTTTTGAGAACCTTGTATCCTTCTTGGAGTCCGGCTGCTATTAAATCTGCTATCATGACCACAGGTAAGAAGAAACTCTTGAAGTTTCTCATACTTCATGTCATTTCTTGA
Protein sequence

>Msa0512430

MAIFSSKGPNTIVPEILKPDITAPGVSVIAAFTEAEEPTNEEIDNRRIQFVLLTGTSMSSPHISGIAGLLRTLYPSWSPAAIKSAIMTTGKKKLLKFLILHVIS*