AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0147960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0147960 MtrunA17_Chr1g0157481 96.716 335 9 1 1 335 1 333 0.0 620
Msa0147960 MtrunA17_Chr5g0447531 46.215 251 117 7 78 324 17 253 1.04e-63 202
Msa0147960 MtrunA17_Chr6g0453141 48.133 241 113 7 85 324 24 253 1.48e-62 200
Msa0147960 MtrunA17_Chr6g0453151 50.926 216 95 6 109 324 116 320 2.30e-62 201
Msa0147960 MtrunA17_Chr4g0051941 47.934 242 113 7 85 324 24 254 3.62e-62 199
Msa0147960 MtrunA17_Chr6g0453181 50.901 222 98 6 103 324 43 253 5.53e-62 198
Msa0147960 MtrunA17_Chr6g0453161 51.389 216 94 6 109 324 316 520 8.96e-59 197
Msa0147960 MtrunA17_Chr6g0453161 50.926 216 95 6 109 324 51 255 1.89e-58 197
Msa0147960 MtrunA17_Chr2g0318521 46.575 219 108 3 106 324 43 252 1.75e-58 189
Msa0147960 MtrunA17_Chr6g0476641 44.444 234 114 4 95 326 57 276 9.60e-50 167
Msa0147960 MtrunA17_Chr6g0464511 43.860 228 83 8 97 324 18 200 9.16e-44 149
Msa0147960 MtrunA17_Chr3g0133901 39.669 242 105 7 105 331 49 264 8.94e-41 143
Msa0147960 MtrunA17_Chr8g0345631 31.868 273 142 7 72 330 24 266 7.83e-36 130
Msa0147960 MtrunA17_Chr6g0462031 39.500 200 99 7 127 325 56 234 1.81e-35 129
Msa0147960 MtrunA17_Chr3g0092091 38.208 212 99 8 127 330 63 250 3.50e-34 125
Msa0147960 MtrunA17_Chr2g0301081 36.916 214 107 5 127 331 72 266 3.15e-33 124
Msa0147960 MtrunA17_Chr5g0448421 36.245 229 106 8 128 335 68 277 7.57e-33 123
Msa0147960 MtrunA17_Chr5g0448411 36.245 229 106 8 128 335 66 275 7.62e-33 123
Msa0147960 MtrunA17_Chr4g0006181 34.848 264 97 11 114 331 112 346 1.66e-28 113
Msa0147960 MtrunA17_Chr6g0453171 61.039 77 27 2 248 324 13 86 3.11e-24 95.1
Msa0147960 MtrunA17_Chr3g0113311 30.131 229 90 6 127 310 67 270 5.64e-18 82.8
Msa0147960 MtrunA17_Chr2g0279001 32.287 223 102 8 114 310 57 256 6.16e-17 79.3
Msa0147960 MtrunA17_Chr2g0296081 49.333 75 33 2 255 329 32 101 1.11e-16 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0147960 AT1G76570.1 76.744 301 63 2 37 331 28 327 2.24e-174 487
Msa0147960 AT3G27690.2 50.655 229 96 6 99 324 72 286 9.26e-67 212
Msa0147960 AT3G27690.1 50.655 229 96 6 99 324 40 254 1.11e-66 211
Msa0147960 AT2G05100.1 45.489 266 125 8 65 324 2 253 4.09e-65 207
Msa0147960 AT2G05070.1 49.782 229 98 6 99 324 39 253 5.72e-65 206
Msa0147960 AT1G29930.1 49.776 223 102 6 102 324 43 255 6.26e-62 199
Msa0147960 AT1G29920.1 49.776 223 102 6 102 324 43 255 8.11e-62 198
Msa0147960 AT1G29910.1 49.776 223 102 6 102 324 43 255 8.11e-62 198
Msa0147960 AT2G34430.1 49.123 228 106 6 97 324 37 254 2.63e-61 197
Msa0147960 AT2G34420.1 49.776 223 102 6 102 324 41 253 4.88e-61 196
Msa0147960 AT5G54270.1 46.119 219 109 3 106 324 44 253 1.03e-58 190
Msa0147960 AT2G05100.2 44.400 250 119 8 65 308 2 237 1.54e-53 179
Msa0147960 AT4G10340.1 47.297 222 97 5 109 326 62 267 4.64e-48 163
Msa0147960 AT1G45474.2 38.117 223 91 5 127 329 56 251 2.71e-39 139
Msa0147960 AT1G45474.1 38.117 223 91 5 127 329 56 251 2.71e-39 139
Msa0147960 AT3G54890.1 42.500 200 93 7 127 325 55 233 1.34e-37 135
Msa0147960 AT3G47470.1 34.979 243 123 9 96 330 36 251 4.87e-35 128
Msa0147960 AT1G19150.1 36.279 215 107 5 127 331 75 269 4.63e-34 126
Msa0147960 AT1G61520.3 35.926 270 124 11 89 335 30 273 9.01e-34 125
Msa0147960 AT1G61520.1 35.926 270 124 11 89 335 30 273 9.01e-34 125
Msa0147960 AT3G61470.1 34.234 222 116 5 120 330 53 255 3.37e-33 124
Msa0147960 AT1G61520.2 35.874 223 103 8 134 335 15 218 9.57e-30 113
Msa0147960 AT5G01530.1 34.221 263 100 10 114 331 55 289 1.46e-28 112
Msa0147960 AT3G08940.2 33.218 289 117 12 92 331 25 286 3.53e-28 111
Msa0147960 AT3G54890.2 33.333 228 85 7 99 325 38 199 1.43e-24 99.8
Msa0147960 AT3G54890.4 41.212 165 72 6 127 289 55 196 2.28e-23 96.7
Msa0147960 AT2G40100.1 32.407 216 102 9 110 310 82 268 1.28e-16 79.3
Msa0147960 AT5G28450.1 47.368 76 39 1 256 330 96 171 1.05e-15 74.3
Msa0147960 AT3G54890.3 43.529 85 41 2 127 211 55 132 1.44e-12 65.5

Find 118 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGATCTTTGGACAGATTTA+AGG 0.152281 1_4:-8094487 None:intergenic
AGATGTTGTGTTCTGGGTTT+TGG 0.172127 1_4:-8091280 None:intergenic
TTCAAAAGCTTCAGGATCTT+TGG 0.220610 1_4:-8094499 None:intergenic
GGGGAACTGCCTGGGGATTA+TGG 0.220707 1_4:+8091661 Msa0147960:CDS
TCCTGAGTTATTAGACCTAT+TGG 0.230242 1_4:+8091901 Msa0147960:CDS
CATGGCTGTTGTGCAGGTTT+TGG 0.262087 1_4:+8094790 Msa0147960:three_prime_UTR
GGGTAGCCATCATACGAAAT+AGG 0.272531 1_4:-8091625 None:intergenic
GCAGATGAGATGTTGTGTTC+TGG 0.276090 1_4:-8091287 None:intergenic
TTCAGCTCTTCAAAAGCTTC+AGG 0.290764 1_4:-8094507 None:intergenic
CCACAATATCTGGCGTATTC+TGG 0.301086 1_4:-8094390 None:intergenic
TGCTTCAATCCCACAATATC+TGG 0.308295 1_4:-8094400 None:intergenic
TCTTCATCTTGTTTCGTTAG+TGG 0.309561 1_4:+8091217 Msa0147960:CDS
AATCACACATTTCTTAAAAC+TGG 0.315099 1_4:-8094876 None:intergenic
GCTATAGCTAACAGTCCATT+AGG 0.317955 1_4:+8091376 Msa0147960:CDS
GATTATGGCTTTGACATTGC+TGG 0.328181 1_4:+8091676 Msa0147960:CDS
CTTTGAAGTGACTCCCCTAA+TGG 0.329323 1_4:-8091391 None:intergenic
ATCTCATCTGCAATGCTTCA+TGG 0.333732 1_4:+8091299 Msa0147960:CDS
TATTTGCCAAGTACTCCTTA+TGG 0.335720 1_4:+8093961 Msa0147960:CDS
CCTGAGTTATTAGACCTATT+GGG 0.347914 1_4:+8091902 Msa0147960:CDS
CTTATTACAGCTATTACTTC+AGG 0.349625 1_4:-8094833 None:intergenic
CAGATGAGATGTTGTGTTCT+GGG 0.350739 1_4:-8091286 None:intergenic
GAAGGCCTGTTGTTAATTAG+AGG 0.355824 1_4:-8094982 None:intergenic
AAGTAACTTAATTGTTTGTT+TGG 0.359607 1_4:-8095004 None:intergenic
TTCACTTTGTTGAACCTGTT+TGG 0.368694 1_4:+8091930 Msa0147960:CDS
CTGCAGTTCCACTGGATCCT+TGG 0.370306 1_4:-8091704 None:intergenic
TTGAGATATTGCATGCTCGC+TGG 0.371386 1_4:+8091849 Msa0147960:CDS
CCTTTCCACAACAACTTGCT+TGG 0.375325 1_4:+8094645 Msa0147960:CDS
CTTTCCACAACAACTTGCTT+GGG 0.383331 1_4:+8094646 Msa0147960:CDS
GGATCTTTGGACAGATTTAA+GGG 0.386269 1_4:-8094486 None:intergenic
GCTTCATGGCAAGAGCTTGC+TGG 0.387520 1_4:+8091313 Msa0147960:CDS
CTATAGCTAACAGTCCATTA+GGG 0.394585 1_4:+8091377 Msa0147960:CDS
CAAGGTCGGCCTCGTTGGCT+TGG 0.394675 1_4:+8091601 Msa0147960:CDS
CTTGGCCCTATTTCGTATGA+TGG 0.395875 1_4:+8091619 Msa0147960:CDS
GCTACCCATCATATCTCATT+GGG 0.406465 1_4:+8091641 Msa0147960:CDS
ATCTCATTGGGGAACTGCCT+GGG 0.413530 1_4:+8091653 Msa0147960:CDS
AGGAGTCCTTCATTTGTTGA+AGG 0.416604 1_4:+8094925 Msa0147960:three_prime_UTR
TATCTCATTGGGGAACTGCC+TGG 0.425964 1_4:+8091652 Msa0147960:CDS
ACAAAACTCCTCTAAATTCA+AGG 0.426529 1_4:+8091444 Msa0147960:CDS
CCTTCACTTAGCTGGAAGCC+AGG 0.428233 1_4:+8093922 Msa0147960:CDS
TCATTCCTCTAATTAACAAC+AGG 0.428524 1_4:+8094977 Msa0147960:three_prime_UTR
TTGGCAATGATGGCTTGGTT+AGG 0.434393 1_4:+8094555 Msa0147960:CDS
AAATGGACGCTTGGCAATGA+TGG 0.434782 1_4:+8094545 Msa0147960:CDS
AAATATTTCTGCAGTTCCAC+TGG 0.436745 1_4:-8091712 None:intergenic
AACTTAATTGTTTGTTTGGA+AGG 0.437121 1_4:-8095000 None:intergenic
AGCCTGAGCCTTGAATTTAG+AGG 0.441217 1_4:-8091452 None:intergenic
GGCTACCCATCATATCTCAT+TGG 0.443187 1_4:+8091640 Msa0147960:CDS
GGTAGCCATCATACGAAATA+GGG 0.443439 1_4:-8091624 None:intergenic
TAACCAACGCGCCACCAAAC+AGG 0.453677 1_4:-8091944 None:intergenic
CTTCCAGCTAAGTGAAGGCC+TGG 0.460265 1_4:-8093917 None:intergenic
GGATCAAACAATGCTCCTCC+AGG 0.460577 1_4:-8094465 None:intergenic
GCGTGGCATGGCTGTTGTGC+AGG 0.464275 1_4:+8094784 Msa0147960:three_prime_UTR
TGAGATATTGCATGCTCGCT+GGG 0.466215 1_4:+8091850 Msa0147960:CDS
CCAGAATACGCCAGATATTG+TGG 0.467314 1_4:+8094390 Msa0147960:CDS
CTAGATTACCTTGGCATCCC+AGG 0.469883 1_4:+8093899 Msa0147960:CDS
CGTTGGTTATTCCAAGCTCC+AGG 0.475483 1_4:+8091958 Msa0147960:CDS
CTCCTCTAAATTCAAGGCTC+AGG 0.476322 1_4:+8091450 Msa0147960:CDS
ATGGACAAGGTCGGCCTCGT+TGG 0.481460 1_4:+8091596 Msa0147960:CDS
AGTTCCCCAATGAGATATGA+TGG 0.482903 1_4:-8091646 None:intergenic
TGGGCTATGCTTGCATCTGT+TGG 0.483351 1_4:+8091869 Msa0147960:CDS
TGACATTGCTGGCCTTGCCA+AGG 0.493730 1_4:+8091687 Msa0147960:CDS
ATCCCAGGCCTTCACTTAGC+TGG 0.493884 1_4:+8093914 Msa0147960:CDS
ATATTGTGGGATTGAAGCAC+TGG 0.493998 1_4:+8094404 Msa0147960:CDS
GCATTACCATAAGGAGTACT+TGG 0.495126 1_4:-8093967 None:intergenic
TTCACACAAGCGGCACTGAC+GGG 0.495505 1_4:+8094582 Msa0147960:CDS
CTTCACACAAGCGGCACTGA+CGG 0.499189 1_4:+8094581 Msa0147960:CDS
GAAGTAATAGCTGTAATAAG+TGG 0.502568 1_4:+8094836 Msa0147960:three_prime_UTR
CAAAGTGAAAGACTCCCAAT+AGG 0.506429 1_4:-8091916 None:intergenic
AACAGACCTTCAACAAATGA+AGG 0.508939 1_4:-8094931 None:intergenic
GAACATGCTAACCTGGAGCT+TGG 0.511852 1_4:-8091969 None:intergenic
GGCTTGTCTCAAACTAAGAA+AGG 0.513058 1_4:+8091148 None:intergenic
CCAGGGTAGTTTATATCACC+AGG 0.514510 1_4:-8094447 None:intergenic
TGTTAATTAGAGGAATGATA+AGG 0.514974 1_4:-8094972 None:intergenic
CAAGCGGCACTGACGGGTAA+AGG 0.516467 1_4:+8094588 Msa0147960:CDS
GACGCTTGGCAATGATGGCT+TGG 0.532277 1_4:+8094550 Msa0147960:CDS
TCAAACTAAGAAAGGAGCTA+TGG 0.534985 1_4:+8091156 Msa0147960:exon
AACGAAACAAGATGAAGAAG+AGG 0.542469 1_4:-8091212 None:intergenic
ATTCAAGGCTCAGGCTGCCA+AGG 0.545741 1_4:+8091459 Msa0147960:CDS
CTTAGCTGGAAGCCAGGGAG+TGG 0.549922 1_4:+8093928 Msa0147960:CDS
CCCAATAGGTCTAATAACTC+AGG 0.553945 1_4:-8091902 None:intergenic
TTCCAGCTAAGTGAAGGCCT+GGG 0.557148 1_4:-8093916 None:intergenic
CAATTCAATGAAATTACACT+AGG 0.563647 1_4:+8094674 Msa0147960:CDS
TAGCAATCACAACCACTCCC+TGG 0.564935 1_4:-8093940 None:intergenic
AAAGCAGTTTACAGAGGAGA+GGG 0.566780 1_4:-8091254 None:intergenic
GTGACCCAAGCAAGTTGTTG+TGG 0.567405 1_4:-8094650 None:intergenic
GAACCTGTTTGGTGGCGCGT+TGG 0.568409 1_4:+8091941 Msa0147960:CDS
CCAAGCAAGTTGTTGTGGAA+AGG 0.568516 1_4:-8094645 None:intergenic
CCTCTAGGAATATATCTGCC+TGG 0.569936 1_4:+8094429 Msa0147960:CDS
ATTGAAGCACTGGAGCCTCT+AGG 0.571898 1_4:+8094414 Msa0147960:CDS
CAGAATACGCCAGATATTGT+GGG 0.576638 1_4:+8094391 Msa0147960:CDS
ACTTTGTTGAACCTGTTTGG+TGG 0.577642 1_4:+8091933 Msa0147960:CDS
AGTGAAGGCCTGGGATGCCA+AGG 0.580571 1_4:-8093907 None:intergenic
CAAAGCAGTTTACAGAGGAG+AGG 0.584363 1_4:-8091255 None:intergenic
CAAGTTGTTGTGGAAAGGAT+CGG 0.585579 1_4:-8094640 None:intergenic
CTTCACTTAGCTGGAAGCCA+GGG 0.598176 1_4:+8093923 Msa0147960:CDS
TCTCATTGGGGAACTGCCTG+GGG 0.598517 1_4:+8091654 Msa0147960:CDS
AAACAAGATGAAGAAGAGGA+AGG 0.602803 1_4:-8091208 None:intergenic
ATGTCAAAGCCATAATCCCC+AGG 0.603179 1_4:-8091670 None:intergenic
CTAAATATAAGAGACAATGT+AGG 0.609097 1_4:+8094722 Msa0147960:three_prime_UTR
ATAGCTTTGACAGCAGTGAA+AGG 0.610261 1_4:-8091358 None:intergenic
GTTAGGTTTCTTCACACAAG+CGG 0.612558 1_4:+8094572 Msa0147960:CDS
GGGGATACTCTAGATTACCT+TGG 0.624443 1_4:+8093890 Msa0147960:CDS
CCTGGCTTCCAGCTAAGTGA+AGG 0.626238 1_4:-8093922 None:intergenic
GTTCCACTGGATCCTTGGCA+AGG 0.626418 1_4:-8091699 None:intergenic
AGGTCCTGTACAAAACATTG+TGG 0.632483 1_4:+8094608 Msa0147960:CDS
GTTCCCCAATGAGATATGAT+GGG 0.633105 1_4:-8091645 None:intergenic
GCATTGATGCATTAGAGGCG+TGG 0.633762 1_4:+8094767 Msa0147960:three_prime_UTR
CCTGGTGATATAAACTACCC+TGG 0.634831 1_4:+8094447 Msa0147960:CDS
GATCAAACAATGCTCCTCCA+GGG 0.637834 1_4:-8094464 None:intergenic
CTAAGAAAGGAGCTATGGTG+TGG 0.655345 1_4:+8091161 Msa0147960:exon
TATAGCTAACAGTCCATTAG+GGG 0.659518 1_4:+8091378 Msa0147960:CDS
TGGGGCAAAGCAGTTTACAG+AGG 0.661215 1_4:-8091260 None:intergenic
GATGCATTAGAGGCGTGGCA+TGG 0.664896 1_4:+8094772 Msa0147960:three_prime_UTR
CCAGGCAGATATATTCCTAG+AGG 0.666249 1_4:-8094429 None:intergenic
TGGCCTTGCCAAGGATCCAG+TGG 0.670833 1_4:+8091696 Msa0147960:CDS
CTGCCAAGGCCAGAAAACAG+AGG 0.673764 1_4:+8091473 Msa0147960:CDS
CTACCCATCATATCTCATTG+GGG 0.701642 1_4:+8091642 Msa0147960:CDS
GAAATAGGGCCAAGCCAACG+AGG 0.723058 1_4:-8091610 None:intergenic
GGTGATATAAACTACCCTGG+AGG 0.752250 1_4:+8094450 Msa0147960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAATAAAAATAATTGAAAT+CGG - chr1_4:8091505-8091524 None:intergenic 10.0%
!! TTAATGGTAAATTAAATGAA+AGG - chr1_4:8091826-8091845 None:intergenic 15.0%
!!! AGGAATTTTTTTAATGATTA+TGG + chr1_4:8092317-8092336 Msa0147960:intron 15.0%
!!! GGAATTTTTTTAATGATTAT+GGG + chr1_4:8092318-8092337 Msa0147960:intron 15.0%
!!! ATTTTCTTAATTTCTTCAAA+TGG - chr1_4:8092943-8092962 None:intergenic 15.0%
!!! TTATTAGATTTTTAACTTAG+TGG + chr1_4:8094113-8094132 Msa0147960:intron 15.0%
!! AAAGTGAAAGAAATAAAAAA+TGG + chr1_4:8094528-8094547 Msa0147960:CDS 15.0%
!! ATAACATAACATAACCATAA+TGG - chr1_4:8091753-8091772 None:intergenic 20.0%
!! AGTTTATAAAGAGAATTGAT+AGG + chr1_4:8092495-8092514 Msa0147960:intron 20.0%
!! AGTTTATAAAGAGAATTGAT+AGG + chr1_4:8092495-8092514 Msa0147960:intron 20.0%
!!! TCCCTTTTTTTAATGATTAT+GGG + chr1_4:8092636-8092655 Msa0147960:intron 20.0%
!! TCCCATAATCATTAAAAAAA+GGG - chr1_4:8092322-8092341 None:intergenic 20.0%
!! AGTTTATAAAGAGAATTGAT+AGG + chr1_4:8092495-8092514 Msa0147960:intron 20.0%
!!! TTTTTTCCAATATTTGTCAA+CGG + chr1_4:8092909-8092928 Msa0147960:intron 20.0%
!!! CTTGAATTTAAAGTGTATTT+TGG + chr1_4:8093368-8093387 Msa0147960:intron 20.0%
!! ACCAAATAATTCTAATATTG+TGG - chr1_4:8093533-8093552 None:intergenic 20.0%
!! ACTCTTATTGTTAAATGTTA+AGG + chr1_4:8093557-8093576 Msa0147960:intron 20.0%
!! CTCTTATTGTTAAATGTTAA+GGG + chr1_4:8093558-8093577 Msa0147960:intron 20.0%
!! TCTTATTGTTAAATGTTAAG+GGG + chr1_4:8093559-8093578 Msa0147960:intron 20.0%
!! CAATTAATAAAGTGCAATAA+TGG - chr1_4:8093727-8093746 None:intergenic 20.0%
!! AAATAAAAAGTTTCAGTAGT+TGG + chr1_4:8094261-8094280 Msa0147960:intron 20.0%
!!! AACCATAAATTTGTTTCTTT+TGG + chr1_4:8094292-8094311 Msa0147960:intron 20.0%
!! AAGTAACTTAATTGTTTGTT+TGG - chr1_4:8095007-8095026 None:intergenic 20.0%
! GAAAATGTTTAAGGAATGAT+AGG - chr1_4:8091566-8091585 None:intergenic 25.0%
! AACAAACTTGTGTAAGATAA+AGG - chr1_4:8092018-8092037 None:intergenic 25.0%
!! CATTTTCCACTAATTAGAAA+GGG + chr1_4:8092061-8092080 Msa0147960:intron 25.0%
!! AATTTTCCCTTTCTAATTAG+TGG - chr1_4:8092070-8092089 None:intergenic 25.0%
! CATTCATTGTAAAAGTTTAC+CGG + chr1_4:8092286-8092305 Msa0147960:intron 25.0%
! AAAAAATTCCTTATTCATGC+CGG - chr1_4:8092308-8092327 None:intergenic 25.0%
! CATTCATTGTAAAAGTTTAC+CGG + chr1_4:8092286-8092305 Msa0147960:intron 25.0%
!!! CTCCCTTTTTTTAATGATTA+TGG + chr1_4:8092635-8092654 Msa0147960:intron 25.0%
! CTCCCATAATCATTAAAAAA+AGG - chr1_4:8092323-8092342 None:intergenic 25.0%
! TGATATGAGTTTATAAAGAG+AGG - chr1_4:8092858-8092877 None:intergenic 25.0%
!! AAGTTTTCAAACCTGTTATA+TGG + chr1_4:8093039-8093058 Msa0147960:intron 25.0%
! ACGGTAATATTATTTAAGAG+TGG - chr1_4:8093133-8093152 None:intergenic 25.0%
! GCCACAATATTAGAATTATT+TGG + chr1_4:8093529-8093548 Msa0147960:intron 25.0%
! AATTATTGGTATAGGGATAA+GGG - chr1_4:8093687-8093706 None:intergenic 25.0%
!! TTTTTACGAAGCAAATAAAC+TGG + chr1_4:8093810-8093829 Msa0147960:intron 25.0%
!!! GATTTTTAACTTAGTGGTAT+TGG + chr1_4:8094119-8094138 Msa0147960:intron 25.0%
! CTTTCATAACTCATTTGTTT+GGG + chr1_4:8094235-8094254 Msa0147960:intron 25.0%
! GTCCAAAAGAAACAAATTTA+TGG - chr1_4:8094297-8094316 None:intergenic 25.0%
! ATTCTTATCATAAAACAGGT+TGG + chr1_4:8094366-8094385 Msa0147960:intron 25.0%
! CAATTCAATGAAATTACACT+AGG + chr1_4:8094674-8094693 Msa0147960:CDS 25.0%
! CTAAATATAAGAGACAATGT+AGG + chr1_4:8094722-8094741 Msa0147960:three_prime_UTR 25.0%
! AATCACACATTTCTTAAAAC+TGG - chr1_4:8094879-8094898 None:intergenic 25.0%
! TGTTAATTAGAGGAATGATA+AGG - chr1_4:8094975-8094994 None:intergenic 25.0%
! AACTTAATTGTTTGTTTGGA+AGG - chr1_4:8095003-8095022 None:intergenic 25.0%
ACAAAACTCCTCTAAATTCA+AGG + chr1_4:8091444-8091463 Msa0147960:CDS 30.0%
CCAAAAGCTGAAAATGTTTA+AGG - chr1_4:8091575-8091594 None:intergenic 30.0%
! CCTTAAACATTTTCAGCTTT+TGG + chr1_4:8091572-8091591 Msa0147960:intron 30.0%
! AACATTTTCAGCTTTTGGTA+TGG + chr1_4:8091577-8091596 Msa0147960:intron 30.0%
TAACATAACCATAATGGCTT+GGG - chr1_4:8091747-8091766 None:intergenic 30.0%
ATAACATAACCATAATGGCT+TGG - chr1_4:8091748-8091767 None:intergenic 30.0%
TGCAATATCTCAAAGCTTAA+TGG - chr1_4:8091842-8091861 None:intergenic 30.0%
CCTTTCTAATTAGTGGAAAA+TGG - chr1_4:8092063-8092082 None:intergenic 30.0%
! CCATTTTCCACTAATTAGAA+AGG + chr1_4:8092060-8092079 Msa0147960:intron 30.0%
CATCTTGTAATGAGAAAGAA+AGG - chr1_4:8092366-8092385 None:intergenic 30.0%
ATAGATGCCAAATATCATCA+GGG + chr1_4:8092428-8092447 Msa0147960:intron 30.0%
CATATTTCCCTGATGATATT+TGG - chr1_4:8092438-8092457 None:intergenic 30.0%
TGTCAGTTAGTTATAAAGAG+AGG - chr1_4:8092539-8092558 None:intergenic 30.0%
TGGGAGATACAAATATAACA+TGG + chr1_4:8092655-8092674 Msa0147960:intron 30.0%
CATCTTGTAATGAGAAAGAA+AGG - chr1_4:8092366-8092385 None:intergenic 30.0%
ACATAGATGCCAAATATCAT+CGG + chr1_4:8092426-8092445 Msa0147960:intron 30.0%
! ATCAATTGTGTGCTTTGTTA+TGG + chr1_4:8092980-8092999 Msa0147960:intron 30.0%
! TCAATTGTGTGCTTTGTTAT+GGG + chr1_4:8092981-8093000 Msa0147960:intron 30.0%
! TTTTCAAACCTGTTATATGG+TGG + chr1_4:8093042-8093061 Msa0147960:intron 30.0%
TTTCAAACCTGTTATATGGT+GGG + chr1_4:8093043-8093062 Msa0147960:intron 30.0%
! AAACATACGAAAGCATATCA+CGG - chr1_4:8093152-8093171 None:intergenic 30.0%
CTCTTTATAAGACTTAGAGT+GGG - chr1_4:8093203-8093222 None:intergenic 30.0%
GAATTATTGGTATAGGGATA+AGG - chr1_4:8093688-8093707 None:intergenic 30.0%
TCCCTATACCAATAATTCTT+TGG + chr1_4:8093690-8093709 Msa0147960:intron 30.0%
GCCAAAGAATTATTGGTATA+GGG - chr1_4:8093694-8093713 None:intergenic 30.0%
TGCCAAAGAATTATTGGTAT+AGG - chr1_4:8093695-8093714 None:intergenic 30.0%
!! AGAAAGTGCCAAAGAATTAT+TGG - chr1_4:8093701-8093720 None:intergenic 30.0%
AGCTAAATTTATTCTCATGC+AGG - chr1_4:8093771-8093790 None:intergenic 30.0%
! CATGAGAATAAATTTAGCTC+AGG + chr1_4:8093772-8093791 Msa0147960:intron 30.0%
CATCATCACTAACATCATAT+GGG - chr1_4:8094076-8094095 None:intergenic 30.0%
ACATCATCACTAACATCATA+TGG - chr1_4:8094077-8094096 None:intergenic 30.0%
! ATATGATGTTAGTGATGATG+TGG + chr1_4:8094076-8094095 Msa0147960:intron 30.0%
! TTAGTGGTATTGGATGTATT+GGG + chr1_4:8094129-8094148 Msa0147960:intron 30.0%
TACAAATCGAACATTTCTCA+TGG + chr1_4:8094164-8094183 Msa0147960:intron 30.0%
GCTTTCATAACTCATTTGTT+TGG + chr1_4:8094234-8094253 Msa0147960:intron 30.0%
AGCTACTGTTACTACTAATT+TGG + chr1_4:8094342-8094361 Msa0147960:intron 30.0%
GCTACTGTTACTACTAATTT+GGG + chr1_4:8094343-8094362 Msa0147960:intron 30.0%
TGGGATTCTTATCATAAAAC+AGG + chr1_4:8094362-8094381 Msa0147960:intron 30.0%
AGAAATAAAAAATGGACGCT+TGG + chr1_4:8094536-8094555 Msa0147960:CDS 30.0%
!! ATTTTGCATTGATGCATTAG+AGG + chr1_4:8094762-8094781 Msa0147960:three_prime_UTR 30.0%
CTTATTACAGCTATTACTTC+AGG - chr1_4:8094836-8094855 None:intergenic 30.0%
GAAGTAATAGCTGTAATAAG+TGG + chr1_4:8094836-8094855 Msa0147960:three_prime_UTR 30.0%
GAATGATAAGGTCACAAAAA+CGG - chr1_4:8094963-8094982 None:intergenic 30.0%
TCATTCCTCTAATTAACAAC+AGG + chr1_4:8094977-8094996 Msa0147960:three_prime_UTR 30.0%
TCAAACTAAGAAAGGAGCTA+TGG + chr1_4:8091156-8091175 Msa0147960:exon 35.0%
AAACAAGATGAAGAAGAGGA+AGG - chr1_4:8091211-8091230 None:intergenic 35.0%
AACGAAACAAGATGAAGAAG+AGG - chr1_4:8091215-8091234 None:intergenic 35.0%
! TCTTCATCTTGTTTCGTTAG+TGG + chr1_4:8091217-8091236 Msa0147960:CDS 35.0%
CTATAGCTAACAGTCCATTA+GGG + chr1_4:8091377-8091396 Msa0147960:CDS 35.0%
TATAGCTAACAGTCCATTAG+GGG + chr1_4:8091378-8091397 Msa0147960:CDS 35.0%
GGAGTCACTTCAAAGAAAAA+TGG + chr1_4:8091399-8091418 Msa0147960:CDS 35.0%
! AAATATTTCTGCAGTTCCAC+TGG - chr1_4:8091715-8091734 None:intergenic 35.0%
TCCTGAGTTATTAGACCTAT+TGG + chr1_4:8091901-8091920 Msa0147960:CDS 35.0%
CCTGAGTTATTAGACCTATT+GGG + chr1_4:8091902-8091921 Msa0147960:CDS 35.0%
TTCACTTTGTTGAACCTGTT+TGG + chr1_4:8091930-8091949 Msa0147960:CDS 35.0%
TCTCTCATTTCATCGACAAT+AGG + chr1_4:8092259-8092278 Msa0147960:intron 35.0%
CTCTCATTTCATCGACAATA+GGG + chr1_4:8092260-8092279 Msa0147960:intron 35.0%
AAAGTTTACCGGCATGAATA+AGG + chr1_4:8092297-8092316 Msa0147960:intron 35.0%
TGGGAGATGCAAATATAACA+TGG + chr1_4:8092337-8092356 Msa0147960:intron 35.0%
CATAGATGCCAAATATCATC+AGG + chr1_4:8092427-8092446 Msa0147960:intron 35.0%
AGAGAATTGATAGGCTCATA+AGG + chr1_4:8092504-8092523 Msa0147960:intron 35.0%
AGAGAATTGATAGGCTCAAT+AGG + chr1_4:8092570-8092589 Msa0147960:intron 35.0%
GAGAATTGATAGGCTCAATA+GGG + chr1_4:8092571-8092590 Msa0147960:intron 35.0%
AAAGTTTACCGGCATGAATT+TGG + chr1_4:8092608-8092627 Msa0147960:intron 35.0%
CATAGATGCCAAATATCATC+GGG + chr1_4:8092427-8092446 Msa0147960:intron 35.0%
ATAGATGCCAAATATCATCG+GGG + chr1_4:8092747-8092766 Msa0147960:intron 35.0%
CATATTTCCCCGATGATATT+TGG - chr1_4:8092757-8092776 None:intergenic 35.0%
CTTATCAGTTAGTTATGCAG+TGG - chr1_4:8092794-8092813 None:intergenic 35.0%
AGAGAATTGATAGGCTCATA+AGG + chr1_4:8092504-8092523 Msa0147960:intron 35.0%
AGAGTCCTATATTTCCAATG+TGG + chr1_4:8092878-8092897 Msa0147960:intron 35.0%
GAGTCCTATATTTCCAATGT+GGG + chr1_4:8092879-8092898 Msa0147960:intron 35.0%
AAGTCCCACATTGGAAATAT+AGG - chr1_4:8092886-8092905 None:intergenic 35.0%
TATATTTCCAATGTGGGACT+TGG + chr1_4:8092885-8092904 Msa0147960:intron 35.0%
ATATTTCCAATGTGGGACTT+GGG + chr1_4:8092886-8092905 Msa0147960:intron 35.0%
GTAGTACCGTTGACAAATAT+TGG - chr1_4:8092918-8092937 None:intergenic 35.0%
TTCAAACCTGTTATATGGTG+GGG + chr1_4:8093044-8093063 Msa0147960:intron 35.0%
! TGTTATATGGTGGGGAAAAA+GGG + chr1_4:8093052-8093071 Msa0147960:intron 35.0%
TCGACAACACTACATAGAAT+TGG + chr1_4:8093107-8093126 Msa0147960:intron 35.0%
CCTCTTTATAAGACTTAGAG+TGG - chr1_4:8093204-8093223 None:intergenic 35.0%
! CCACTCTAAGTCTTATAAAG+AGG + chr1_4:8093201-8093220 Msa0147960:intron 35.0%
TTTCGACAGGATAACAGTAT+TGG - chr1_4:8093260-8093279 None:intergenic 35.0%
AAGTTAGTGACAATTTCGAC+AGG - chr1_4:8093273-8093292 None:intergenic 35.0%
!!! TATTTTGGTATTCACCCTTG+TGG + chr1_4:8093383-8093402 Msa0147960:intron 35.0%
TGTATCAAGCTTAAGCTACA+AGG + chr1_4:8093501-8093520 Msa0147960:intron 35.0%
GTATCAAGCTTAAGCTACAA+GGG + chr1_4:8093502-8093521 Msa0147960:intron 35.0%
TATCAAGCTTAAGCTACAAG+GGG + chr1_4:8093503-8093522 Msa0147960:intron 35.0%
GTTAAATGTTAAGGGGCTAA+TGG + chr1_4:8093566-8093585 Msa0147960:intron 35.0%
TATTTGCCAAGTACTCCTTA+TGG + chr1_4:8093961-8093980 Msa0147960:CDS 35.0%
TGGATACAAGCATTACCATA+AGG - chr1_4:8093979-8093998 None:intergenic 35.0%
ATAATATTAGCAGAGCTCAC+AGG - chr1_4:8094015-8094034 None:intergenic 35.0%
! CTTAGTGGTATTGGATGTAT+TGG + chr1_4:8094128-8094147 Msa0147960:intron 35.0%
! GTTCGATTTGTAGAATCGAA+AGG - chr1_4:8094156-8094175 None:intergenic 35.0%
GGATCTTTGGACAGATTTAA+GGG - chr1_4:8094489-8094508 None:intergenic 35.0%
AGGATCTTTGGACAGATTTA+AGG - chr1_4:8094490-8094509 None:intergenic 35.0%
TTCAAAAGCTTCAGGATCTT+TGG - chr1_4:8094502-8094521 None:intergenic 35.0%
! TGATCCACAATGTTTTGTAC+AGG - chr1_4:8094615-8094634 None:intergenic 35.0%
! TGTGATTTTATTGTTGCGCA+AGG + chr1_4:8094892-8094911 Msa0147960:three_prime_UTR 35.0%
! GTGATTTTATTGTTGCGCAA+GGG + chr1_4:8094893-8094912 Msa0147960:three_prime_UTR 35.0%
AACAGACCTTCAACAAATGA+AGG - chr1_4:8094934-8094953 None:intergenic 35.0%
AAAGCAGTTTACAGAGGAGA+GGG - chr1_4:8091257-8091276 None:intergenic 40.0%
!! ATGTTGTGTTCTGGGTTTTG+GGG - chr1_4:8091281-8091300 None:intergenic 40.0%
!! GATGTTGTGTTCTGGGTTTT+GGG - chr1_4:8091282-8091301 None:intergenic 40.0%
!! AGATGTTGTGTTCTGGGTTT+TGG - chr1_4:8091283-8091302 None:intergenic 40.0%
CAGATGAGATGTTGTGTTCT+GGG - chr1_4:8091289-8091308 None:intergenic 40.0%
ATCTCATCTGCAATGCTTCA+TGG + chr1_4:8091299-8091318 Msa0147960:CDS 40.0%
!! ATAGCTTTGACAGCAGTGAA+AGG - chr1_4:8091361-8091380 None:intergenic 40.0%
GCTATAGCTAACAGTCCATT+AGG + chr1_4:8091376-8091395 Msa0147960:CDS 40.0%
! TTCAGCTTTTGGTATGGACA+AGG + chr1_4:8091583-8091602 Msa0147960:intron 40.0%
GGTAGCCATCATACGAAATA+GGG - chr1_4:8091627-8091646 None:intergenic 40.0%
GCTACCCATCATATCTCATT+GGG + chr1_4:8091641-8091660 Msa0147960:CDS 40.0%
CTACCCATCATATCTCATTG+GGG + chr1_4:8091642-8091661 Msa0147960:CDS 40.0%
GTTCCCCAATGAGATATGAT+GGG - chr1_4:8091648-8091667 None:intergenic 40.0%
AGTTCCCCAATGAGATATGA+TGG - chr1_4:8091649-8091668 None:intergenic 40.0%
!! GATTATGGCTTTGACATTGC+TGG + chr1_4:8091676-8091695 Msa0147960:CDS 40.0%
CCCAATAGGTCTAATAACTC+AGG - chr1_4:8091905-8091924 None:intergenic 40.0%
CAAAGTGAAAGACTCCCAAT+AGG - chr1_4:8091919-8091938 None:intergenic 40.0%
ACTTTGTTGAACCTGTTTGG+TGG + chr1_4:8091933-8091952 Msa0147960:CDS 40.0%
AGAGATAGAACATGCTAACC+TGG - chr1_4:8091979-8091998 None:intergenic 40.0%
!! ACACTTTTCAGGATCAGCAT+GGG - chr1_4:8092160-8092179 None:intergenic 40.0%
!! CTGATCCTGAAAAGTGTCAT+GGG + chr1_4:8092163-8092182 Msa0147960:intron 40.0%
CTTATCAGTTAGCTATGCAG+TGG - chr1_4:8092475-8092494 None:intergenic 40.0%
ATTGATAGGCTCATAAGGTG+AGG + chr1_4:8092509-8092528 Msa0147960:intron 40.0%
TCAGTTAGTTATGCAGTGGT+AGG - chr1_4:8092790-8092809 None:intergenic 40.0%
ATTGATAGGCTCATAAGGTG+AGG + chr1_4:8092509-8092528 Msa0147960:intron 40.0%
AAAAAACCCAAGTCCCACAT+TGG - chr1_4:8092895-8092914 None:intergenic 40.0%
! CTTTTTCCCCACCATATAAC+AGG - chr1_4:8093053-8093072 None:intergenic 40.0%
! CTGTTATATGGTGGGGAAAA+AGG + chr1_4:8093051-8093070 Msa0147960:intron 40.0%
GAAGCTATTCAGTTCACTTC+TGG + chr1_4:8093176-8093195 Msa0147960:intron 40.0%
AGGAATACAGATGTCCACAA+GGG - chr1_4:8093400-8093419 None:intergenic 40.0%
CATCTGTATTCCTGTGTGTA+AGG + chr1_4:8093407-8093426 Msa0147960:intron 40.0%
! TTGAACATCTGTTGGTTAGG+AGG - chr1_4:8093436-8093455 None:intergenic 40.0%
! GGTTTGAACATCTGTTGGTT+AGG - chr1_4:8093439-8093458 None:intergenic 40.0%
ATCAGAAAACTGCACTCTCA+GGG - chr1_4:8093468-8093487 None:intergenic 40.0%
AATCAGAAAACTGCACTCTC+AGG - chr1_4:8093469-8093488 None:intergenic 40.0%
GACTTGGGCTTATATGCTAA+AGG + chr1_4:8093588-8093607 Msa0147960:intron 40.0%
GAAAGGACAAGAGAGAAAGA+CGG - chr1_4:8093665-8093684 None:intergenic 40.0%
TTGGTATAGGGATAAGGGAA+AGG - chr1_4:8093682-8093701 None:intergenic 40.0%
TGAGTCTTCCAATTTCTGAC+AGG + chr1_4:8093868-8093887 Msa0147960:intron 40.0%
GAGTCTTCCAATTTCTGACA+GGG + chr1_4:8093869-8093888 Msa0147960:intron 40.0%
AGTCTTCCAATTTCTGACAG+GGG + chr1_4:8093870-8093889 Msa0147960:intron 40.0%
!! GCATTACCATAAGGAGTACT+TGG - chr1_4:8093970-8093989 None:intergenic 40.0%
! CATGGCTTTTAATCCTTCGT+AGG + chr1_4:8094182-8094201 Msa0147960:intron 40.0%
TTTCAAGAGAACACCTACGA+AGG - chr1_4:8094198-8094217 None:intergenic 40.0%
CAGAATACGCCAGATATTGT+GGG + chr1_4:8094391-8094410 Msa0147960:CDS 40.0%
TGCTTCAATCCCACAATATC+TGG - chr1_4:8094403-8094422 None:intergenic 40.0%
ATATTGTGGGATTGAAGCAC+TGG + chr1_4:8094404-8094423 Msa0147960:CDS 40.0%
TTCAGCTCTTCAAAAGCTTC+AGG - chr1_4:8094510-8094529 None:intergenic 40.0%
GTTAGGTTTCTTCACACAAG+CGG + chr1_4:8094572-8094591 Msa0147960:CDS 40.0%
AGGTCCTGTACAAAACATTG+TGG + chr1_4:8094608-8094627 Msa0147960:CDS 40.0%
CAAGTTGTTGTGGAAAGGAT+CGG - chr1_4:8094643-8094662 None:intergenic 40.0%
! CTTTCCACAACAACTTGCTT+GGG + chr1_4:8094646-8094665 Msa0147960:CDS 40.0%
! AGGAGTCCTTCATTTGTTGA+AGG + chr1_4:8094925-8094944 Msa0147960:three_prime_UTR 40.0%
GAAGGCCTGTTGTTAATTAG+AGG - chr1_4:8094985-8095004 None:intergenic 40.0%
CTAAGAAAGGAGCTATGGTG+TGG + chr1_4:8091161-8091180 Msa0147960:exon 45.0%
CAAAGCAGTTTACAGAGGAG+AGG - chr1_4:8091258-8091277 None:intergenic 45.0%
GCAGATGAGATGTTGTGTTC+TGG - chr1_4:8091290-8091309 None:intergenic 45.0%
!! CTTTGAAGTGACTCCCCTAA+TGG - chr1_4:8091394-8091413 None:intergenic 45.0%
CTCCTCTAAATTCAAGGCTC+AGG + chr1_4:8091450-8091469 Msa0147960:CDS 45.0%
AGCCTGAGCCTTGAATTTAG+AGG - chr1_4:8091455-8091474 None:intergenic 45.0%
! GCTTTTGGTATGGACAAGGT+CGG + chr1_4:8091587-8091606 Msa0147960:intron 45.0%
CTTGGCCCTATTTCGTATGA+TGG + chr1_4:8091619-8091638 Msa0147960:CDS 45.0%
GGGTAGCCATCATACGAAAT+AGG - chr1_4:8091628-8091647 None:intergenic 45.0%
GGCTACCCATCATATCTCAT+TGG + chr1_4:8091640-8091659 Msa0147960:CDS 45.0%
ATGTCAAAGCCATAATCCCC+AGG - chr1_4:8091673-8091692 None:intergenic 45.0%
AAGTACCACCCAAGCCATTA+TGG + chr1_4:8091736-8091755 Msa0147960:intron 45.0%
! CATAACCATAATGGCTTGGG+TGG - chr1_4:8091744-8091763 None:intergenic 45.0%
TTGAGATATTGCATGCTCGC+TGG + chr1_4:8091849-8091868 Msa0147960:CDS 45.0%
TGAGATATTGCATGCTCGCT+GGG + chr1_4:8091850-8091869 Msa0147960:CDS 45.0%
!! GACACTTTTCAGGATCAGCA+TGG - chr1_4:8092161-8092180 None:intergenic 45.0%
!! GCTGATCCTGAAAAGTGTCA+TGG + chr1_4:8092162-8092181 Msa0147960:intron 45.0%
! GAACTCCCATGACACTTTTC+AGG - chr1_4:8092171-8092190 None:intergenic 45.0%
TCAGTTAGCTATGCAGTGGT+AGG - chr1_4:8092471-8092490 None:intergenic 45.0%
GGAGATGACCAAATTCATGC+CGG - chr1_4:8092619-8092638 None:intergenic 45.0%
GTTAGTTATGCAGTGGTAGG+CGG - chr1_4:8092787-8092806 None:intergenic 45.0%
GGTGAACAGTACACATACCT+GGG - chr1_4:8093239-8093258 None:intergenic 45.0%
TGGTGAACAGTACACATACC+TGG - chr1_4:8093240-8093259 None:intergenic 45.0%
CAGGAATACAGATGTCCACA+AGG - chr1_4:8093401-8093420 None:intergenic 45.0%
ATCGGGGTTTGAACATCTGT+TGG - chr1_4:8093444-8093463 None:intergenic 45.0%
AAACTGCACTCTCAGGGAAT+CGG - chr1_4:8093462-8093481 None:intergenic 45.0%
!! TGTTAAGGGGCTAATGGACT+TGG + chr1_4:8093572-8093591 Msa0147960:intron 45.0%
!! GTTAAGGGGCTAATGGACTT+GGG + chr1_4:8093573-8093592 Msa0147960:intron 45.0%
GTCTTCCAATTTCTGACAGG+GGG + chr1_4:8093871-8093890 Msa0147960:intron 45.0%
AGTATCCCCCTGTCAGAAAT+TGG - chr1_4:8093879-8093898 None:intergenic 45.0%
GGGGATACTCTAGATTACCT+TGG + chr1_4:8093890-8093909 Msa0147960:CDS 45.0%
TCACAGGACAAGGTGGATAA+TGG - chr1_4:8093999-8094018 None:intergenic 45.0%
! CATATGGGCTCAAAGAGTAC+TGG - chr1_4:8094061-8094080 None:intergenic 45.0%
CCACAATATCTGGCGTATTC+TGG - chr1_4:8094393-8094412 None:intergenic 45.0%
CCAGAATACGCCAGATATTG+TGG + chr1_4:8094390-8094409 Msa0147960:CDS 45.0%
CCAGGCAGATATATTCCTAG+AGG - chr1_4:8094432-8094451 None:intergenic 45.0%
! CCTCTAGGAATATATCTGCC+TGG + chr1_4:8094429-8094448 Msa0147960:CDS 45.0%
CCAGGGTAGTTTATATCACC+AGG - chr1_4:8094450-8094469 None:intergenic 45.0%
CCTGGTGATATAAACTACCC+TGG + chr1_4:8094447-8094466 Msa0147960:CDS 45.0%
GGTGATATAAACTACCCTGG+AGG + chr1_4:8094450-8094469 Msa0147960:CDS 45.0%
GATCAAACAATGCTCCTCCA+GGG - chr1_4:8094467-8094486 None:intergenic 45.0%
AAATGGACGCTTGGCAATGA+TGG + chr1_4:8094545-8094564 Msa0147960:CDS 45.0%
!! TTGGCAATGATGGCTTGGTT+AGG + chr1_4:8094555-8094574 Msa0147960:CDS 45.0%
CCAAGCAAGTTGTTGTGGAA+AGG - chr1_4:8094648-8094667 None:intergenic 45.0%
! CCTTTCCACAACAACTTGCT+TGG + chr1_4:8094645-8094664 Msa0147960:CDS 45.0%
TGGGGCAAAGCAGTTTACAG+AGG - chr1_4:8091263-8091282 None:intergenic 50.0%
!! CTACCTCTGTTTTCTGGCCT+TGG - chr1_4:8091479-8091498 None:intergenic 50.0%
! CGGTCACTACCTCTGTTTTC+TGG - chr1_4:8091485-8091504 None:intergenic 50.0%
TATCTCATTGGGGAACTGCC+TGG + chr1_4:8091652-8091671 Msa0147960:CDS 50.0%
ATCTCATTGGGGAACTGCCT+GGG + chr1_4:8091653-8091672 Msa0147960:CDS 50.0%
TGGGCTATGCTTGCATCTGT+TGG + chr1_4:8091869-8091888 Msa0147960:CDS 50.0%
! CGTTGGTTATTCCAAGCTCC+AGG + chr1_4:8091958-8091977 Msa0147960:CDS 50.0%
GAACATGCTAACCTGGAGCT+TGG - chr1_4:8091972-8091991 None:intergenic 50.0%
GTTAGCTATGCAGTGGTAGG+CGG - chr1_4:8092468-8092487 None:intergenic 50.0%
GAACAGTACACATACCTGGG+AGG - chr1_4:8093236-8093255 None:intergenic 50.0%
AACTGCACTCTCAGGGAATC+GGG - chr1_4:8093461-8093480 None:intergenic 50.0%
CTAGATTACCTTGGCATCCC+AGG + chr1_4:8093899-8093918 Msa0147960:CDS 50.0%
TTCCAGCTAAGTGAAGGCCT+GGG - chr1_4:8093919-8093938 None:intergenic 50.0%
CTTCACTTAGCTGGAAGCCA+GGG + chr1_4:8093923-8093942 Msa0147960:CDS 50.0%
TAGCAATCACAACCACTCCC+TGG - chr1_4:8093943-8093962 None:intergenic 50.0%
TTAGCAGAGCTCACAGGACA+AGG - chr1_4:8094009-8094028 None:intergenic 50.0%
CAGTCATTTGCGTCTGCAGA+TGG + chr1_4:8094316-8094335 Msa0147960:intron 50.0%
!! ATTGAAGCACTGGAGCCTCT+AGG + chr1_4:8094414-8094433 Msa0147960:CDS 50.0%
GGATCAAACAATGCTCCTCC+AGG - chr1_4:8094468-8094487 None:intergenic 50.0%
GTGACCCAAGCAAGTTGTTG+TGG - chr1_4:8094653-8094672 None:intergenic 50.0%
! GCATTGATGCATTAGAGGCG+TGG + chr1_4:8094767-8094786 Msa0147960:three_prime_UTR 50.0%
! CATGGCTGTTGTGCAGGTTT+TGG + chr1_4:8094790-8094809 Msa0147960:three_prime_UTR 50.0%
!! AGGTTTTGGCGTGTGACAGT+AGG + chr1_4:8094804-8094823 Msa0147960:three_prime_UTR 50.0%
!! TTGCGCAAGGGAGTTTTGTG+AGG + chr1_4:8094905-8094924 Msa0147960:three_prime_UTR 50.0%
GCTTCATGGCAAGAGCTTGC+TGG + chr1_4:8091313-8091332 Msa0147960:CDS 55.0%
ATTCAAGGCTCAGGCTGCCA+AGG + chr1_4:8091459-8091478 Msa0147960:CDS 55.0%
CTGCCAAGGCCAGAAAACAG+AGG + chr1_4:8091473-8091492 Msa0147960:CDS 55.0%
GAAATAGGGCCAAGCCAACG+AGG - chr1_4:8091613-8091632 None:intergenic 55.0%
TCTCATTGGGGAACTGCCTG+GGG + chr1_4:8091654-8091673 Msa0147960:CDS 55.0%
!! TGACATTGCTGGCCTTGCCA+AGG + chr1_4:8091687-8091706 Msa0147960:CDS 55.0%
GTTCCACTGGATCCTTGGCA+AGG - chr1_4:8091702-8091721 None:intergenic 55.0%
CTGCAGTTCCACTGGATCCT+TGG - chr1_4:8091707-8091726 None:intergenic 55.0%
TAACCAACGCGCCACCAAAC+AGG - chr1_4:8091947-8091966 None:intergenic 55.0%
AGAGGTTGTTTGCTCCTCCC+AGG + chr1_4:8093219-8093238 Msa0147960:intron 55.0%
TAGGAGGTCGCCTTACACAC+AGG - chr1_4:8093420-8093439 None:intergenic 55.0%
ACTGCACTCTCAGGGAATCG+GGG - chr1_4:8093460-8093479 None:intergenic 55.0%
ATCCCAGGCCTTCACTTAGC+TGG + chr1_4:8093914-8093933 Msa0147960:CDS 55.0%
CTTCCAGCTAAGTGAAGGCC+TGG - chr1_4:8093920-8093939 None:intergenic 55.0%
CCTGGCTTCCAGCTAAGTGA+AGG - chr1_4:8093925-8093944 None:intergenic 55.0%
CCTTCACTTAGCTGGAAGCC+AGG + chr1_4:8093922-8093941 Msa0147960:CDS 55.0%
GACGCTTGGCAATGATGGCT+TGG + chr1_4:8094550-8094569 Msa0147960:CDS 55.0%
! CTTCACACAAGCGGCACTGA+CGG + chr1_4:8094581-8094600 Msa0147960:CDS 55.0%
!! TTCACACAAGCGGCACTGAC+GGG + chr1_4:8094582-8094601 Msa0147960:CDS 55.0%
! GATGCATTAGAGGCGTGGCA+TGG + chr1_4:8094772-8094791 Msa0147960:three_prime_UTR 55.0%
ATGGACAAGGTCGGCCTCGT+TGG + chr1_4:8091596-8091615 Msa0147960:CDS 60.0%
GGGGAACTGCCTGGGGATTA+TGG + chr1_4:8091661-8091680 Msa0147960:CDS 60.0%
! TGGCCTTGCCAAGGATCCAG+TGG + chr1_4:8091696-8091715 Msa0147960:CDS 60.0%
!! GAACCTGTTTGGTGGCGCGT+TGG + chr1_4:8091941-8091960 Msa0147960:CDS 60.0%
AGTGAAGGCCTGGGATGCCA+AGG - chr1_4:8093910-8093929 None:intergenic 60.0%
CTTAGCTGGAAGCCAGGGAG+TGG + chr1_4:8093928-8093947 Msa0147960:CDS 60.0%
GCAGAGCTCACAGGACAAGG+TGG - chr1_4:8094006-8094025 None:intergenic 60.0%
!! CAAGCGGCACTGACGGGTAA+AGG + chr1_4:8094588-8094607 Msa0147960:CDS 60.0%
! CAAGGTCGGCCTCGTTGGCT+TGG + chr1_4:8091601-8091620 Msa0147960:CDS 65.0%
GCGTGGCATGGCTGTTGTGC+AGG + chr1_4:8094784-8094803 Msa0147960:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 8091152 8095066 8091152 ID=Msa0147960;Name=Msa0147960
chr1_4 mRNA 8091152 8095066 8091152 ID=Msa0147960-mRNA-1;Parent=Msa0147960;Name=Msa0147960-mRNA-1;_AED=0.17;_eAED=0.17;_QI=23|1|1|1|1|1|5|371|335
chr1_4 exon 8091152 8091494 8091152 ID=Msa0147960-mRNA-1:exon:3503;Parent=Msa0147960-mRNA-1
chr1_4 exon 8091588 8091737 8091588 ID=Msa0147960-mRNA-1:exon:3504;Parent=Msa0147960-mRNA-1
chr1_4 exon 8091847 8091979 8091847 ID=Msa0147960-mRNA-1:exon:3505;Parent=Msa0147960-mRNA-1
chr1_4 exon 8093890 8093982 8093890 ID=Msa0147960-mRNA-1:exon:3506;Parent=Msa0147960-mRNA-1
chr1_4 exon 8094384 8095066 8094384 ID=Msa0147960-mRNA-1:exon:3507;Parent=Msa0147960-mRNA-1
chr1_4 five_prime_UTR 8091152 8091174 8091152 ID=Msa0147960-mRNA-1:five_prime_utr;Parent=Msa0147960-mRNA-1
chr1_4 CDS 8091175 8091494 8091175 ID=Msa0147960-mRNA-1:cds;Parent=Msa0147960-mRNA-1
chr1_4 CDS 8091588 8091737 8091588 ID=Msa0147960-mRNA-1:cds;Parent=Msa0147960-mRNA-1
chr1_4 CDS 8091847 8091979 8091847 ID=Msa0147960-mRNA-1:cds;Parent=Msa0147960-mRNA-1
chr1_4 CDS 8093890 8093982 8093890 ID=Msa0147960-mRNA-1:cds;Parent=Msa0147960-mRNA-1
chr1_4 CDS 8094384 8094695 8094384 ID=Msa0147960-mRNA-1:cds;Parent=Msa0147960-mRNA-1
chr1_4 three_prime_UTR 8094696 8095066 8094696 ID=Msa0147960-mRNA-1:three_prime_utr;Parent=Msa0147960-mRNA-1
Gene Sequence

>Msa0147960

ATGGTGTGGCTTCAACTTCAATCAGTGACGTGTCCTTCCTCTTCTTCATCTTGTTTCGTTAGTGGCTCTAGTCGCTGCTCCCTCTCCTCTGTAAACTGCTTTGCCCCAAAACCCAGAACACAACATCTCATCTGCAATGCTTCATGGCAAGAGCTTGCTGGAGTTTTACTATTCTCAGCGATTCCTTTCACTGCTGTCAAAGCTATAGCTAACAGTCCATTAGGGGAGTCACTTCAAAGAAAAATGGAAGAGACTAAGCAACTTGCTGTACAAAACTCCTCTAAATTCAAGGCTCAGGCTGCCAAGGCCAGAAAACAGAGCTTTTGGTATGGACAAGGTCGGCCTCGTTGGCTTGGCCCTATTTCGTATGATGGCTACCCATCATATCTCATTGGGGAACTGCCTGGGGATTATGGCTTTGACATTGCTGGCCTTGCCAAGGATCCAGTGGAACTGCAGAAATATTTCAACTTTGAGATATTGCATGCTCGCTGGGCTATGCTTGCATCTGTTGGTGCTCTCATTCCTGAGTTATTAGACCTATTGGGAGTCTTTCACTTTGTTGAACCTGTTTGGTGGCGCGTTGGTTATTCCAAGCTCCAGGGGGATACTCTAGATTACCTTGGCATCCCAGGCCTTCACTTAGCTGGAAGCCAGGGAGTGGTTGTGATTGCTATTTGCCAAGTACTCCTTATGGTTGGACCAGAATACGCCAGATATTGTGGGATTGAAGCACTGGAGCCTCTAGGAATATATCTGCCTGGTGATATAAACTACCCTGGAGGAGCATTGTTTGATCCCTTAAATCTGTCCAAAGATCCTGAAGCTTTTGAAGAGCTGAAAGTGAAAGAAATAAAAAATGGACGCTTGGCAATGATGGCTTGGTTAGGTTTCTTCACACAAGCGGCACTGACGGGTAAAGGTCCTGTACAAAACATTGTGGATCATATCTCCGATCCTTTCCACAACAACTTGCTTGGGTCACTCAATTCAATGAAATTACACTAG

Protein sequence

>Msa0147960

MVWLQLQSVTCPSSSSSCFVSGSSRCSLSSVNCFAPKPRTQHLICNASWQELAGVLLFSAIPFTAVKAIANSPLGESLQRKMEETKQLAVQNSSKFKAQAAKARKQSFWYGQGRPRWLGPISYDGYPSYLIGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAMLASVGALIPELLDLLGVFHFVEPVWWRVGYSKLQGDTLDYLGIPGLHLAGSQGVVVIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFEELKVKEIKNGRLAMMAWLGFFTQAALTGKGPVQNIVDHISDPFHNNLLGSLNSMKLH*