AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1251500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1251500 MtrunA17_Chr8g0366891 100.000 132 0 0 1 132 1 132 2.15e-94 268
Msa1251500 MtrunA17_Chr5g0411511 63.934 122 38 4 1 117 4 124 6.41e-40 130
Msa1251500 MtrunA17_Chr5g0428121 34.400 125 66 3 1 116 1 118 3.78e-13 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1251500 AT5G65660.1 59.559 136 50 3 1 131 1 136 7.69e-50 155

Find 60 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATATTAAAGAGATCTTAA+TGG 0.274919 8_2:+47674488 Msa1251500:three_prime_UTR
GAGTATGGAAATGGAAAATT+TGG 0.282648 8_2:-47673292 None:intergenic
CCTATTCAATCCTTGTGTTT+TGG 0.288273 8_2:+47674451 Msa1251500:three_prime_UTR
CCGTCCCTTGGTTTCCCTTT+GGG 0.294498 8_2:+47673537 Msa1251500:CDS
ATTAGGAATTGAAGCAAAAC+AGG 0.315810 8_2:+47673985 Msa1251500:intron
ACCGTCCCTTGGTTTCCCTT+TGG 0.330496 8_2:+47673536 Msa1251500:CDS
TCCTCTCTTGTTGCTACCAT+TGG 0.336730 8_2:+47673601 Msa1251500:CDS
CTCTTACACTCATGTGTTTG+AGG 0.371224 8_2:-47673426 None:intergenic
AGGAAGGGAAGAATAACTTT+TGG 0.381616 8_2:-47673379 None:intergenic
TGAGGTATTTATATAGAGTA+TGG 0.382660 8_2:-47673307 None:intergenic
GAAGGAAAAGAAAGGAAGGA+AGG 0.389452 8_2:-47673395 None:intergenic
AAATGAATAGGTTAGGTAGA+AGG 0.409878 8_2:+47674386 Msa1251500:three_prime_UTR
CCAAAACACAAGGATTGAAT+AGG 0.415934 8_2:-47674451 None:intergenic
CCTCTCTTGTTGCTACCATT+GGG 0.420887 8_2:+47673602 Msa1251500:CDS
CATGGCATCGCTATGAACTT+TGG 0.435341 8_2:-47674047 None:intergenic
AGGATTGAATAGGATTGAAT+AGG 0.445040 8_2:-47674441 None:intergenic
ATTTATATAGAGTATGGAAA+TGG 0.452632 8_2:-47673301 None:intergenic
GACAATTTGACACAACAAAA+CGG 0.462162 8_2:-47674221 None:intergenic
AAGGAAAAGAAAGGAAGGAA+GGG 0.467322 8_2:-47673394 None:intergenic
TGTGTTTGTGTAGGTGGTGA+TGG 0.470611 8_2:-47673330 None:intergenic
CTCAAACACATGAGTGTAAG+AGG 0.472452 8_2:+47673427 Msa1251500:five_prime_UTR
TGCGGTGGCTTTAGCGGTGG+CGG 0.472991 8_2:-47674122 None:intergenic
TTATTTGATGAATGACTTTG+AGG 0.473837 8_2:-47673666 None:intergenic
CAAAGAAGGAAAAGAAAGGA+AGG 0.481729 8_2:-47673399 None:intergenic
ATTTACAAATACAAAGGAAT+CGG 0.482953 8_2:-47674149 None:intergenic
TATTTGATGAATGACTTTGA+GGG 0.484211 8_2:-47673665 None:intergenic
AATGTGTGTGTTTGTGTAGG+TGG 0.487968 8_2:-47673336 None:intergenic
AACACAAAGAAGGAAAAGAA+AGG 0.493341 8_2:-47673403 None:intergenic
AGAGAAGGGCAGTGCCCAAA+GGG 0.494638 8_2:-47673551 None:intergenic
GGTAGTTGCGGTGGCTTTAG+CGG 0.501118 8_2:-47674128 None:intergenic
GGTGGCTTTAGCGGTGGCGG+CGG 0.535647 8_2:-47674119 None:intergenic
TTGAATAGGATGAAATGTAA+TGG 0.536402 8_2:-47674427 None:intergenic
AACTTTGGCACATCATCCCC+TGG 0.540201 8_2:-47674032 None:intergenic
GATGCATCTAGACCGTCCCT+TGG 0.550142 8_2:+47673525 Msa1251500:CDS
CTAGATGCATCCACGTGGGA+TGG 0.570025 8_2:-47673513 None:intergenic
TTGTGTAGGTGGTGATGGTG+AGG 0.580780 8_2:-47673325 None:intergenic
GTGTTTGAGGAACACAAAGA+AGG 0.581852 8_2:-47673413 None:intergenic
TATAATGTGTGTGTTTGTGT+AGG 0.583252 8_2:-47673339 None:intergenic
TACAAAGGAATCGGTAGTTG+CGG 0.587455 8_2:-47674140 None:intergenic
CAGTGCCCAAAGGGAAACCA+AGG 0.587464 8_2:-47673542 None:intergenic
CTAATTATTTACAAATACAA+AGG 0.591127 8_2:-47674155 None:intergenic
CGTGATGGTTGACACGGACA+TGG 0.592416 8_2:-47674065 None:intergenic
GGGATGGTGTAAGATGATCT+TGG 0.597735 8_2:-47673497 None:intergenic
TCCGTGTCAACCATCACGGC+CGG 0.605730 8_2:+47674070 Msa1251500:CDS
TCCGGCCGTGATGGTTGACA+CGG 0.606741 8_2:-47674071 None:intergenic
AAAGGAATCGGTAGTTGCGG+TGG 0.608462 8_2:-47674137 None:intergenic
TTAGGAATTGAAGCAAAACA+GGG 0.610121 8_2:+47673986 Msa1251500:intron
AGGAACGAACTTTGTCCCAA+TGG 0.612669 8_2:-47673617 None:intergenic
AGTTGCGGTGGCTTTAGCGG+TGG 0.620561 8_2:-47674125 None:intergenic
AAGAGAAGGGCAGTGCCCAA+AGG 0.630791 8_2:-47673552 None:intergenic
CATGTCCGTGTCAACCATCA+CGG 0.638623 8_2:+47674066 Msa1251500:CDS
CCCAAAGGGAAACCAAGGGA+CGG 0.647076 8_2:-47673537 None:intergenic
CCCAATGGTAGCAACAAGAG+AGG 0.649699 8_2:-47673602 None:intergenic
AGTGCCCAAAGGGAAACCAA+GGG 0.663567 8_2:-47673541 None:intergenic
ACATTACATACCAAAACACA+AGG 0.682439 8_2:-47674461 None:intergenic
ACGGTCTAGATGCATCCACG+TGG 0.687848 8_2:-47673518 None:intergenic
TCATCTTACACCATCCCACG+TGG 0.703336 8_2:+47673503 Msa1251500:CDS
CGGTCTAGATGCATCCACGT+GGG 0.710045 8_2:-47673517 None:intergenic
TAGGAATTGAAGCAAAACAG+GGG 0.718696 8_2:+47673987 Msa1251500:intron
AATTTGACACAACAAAACGG+TGG 0.728129 8_2:-47674218 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAATTATTTACAAATACAA+AGG - chr8_2:47674158-47674177 None:intergenic 15.0%
!!! AATTGTTTTTGAGTAAAAAA+TGG + chr8_2:47674276-47674295 Msa1251500:three_prime_UTR 15.0%
!! ATATATTAAAGAGATCTTAA+TGG + chr8_2:47674488-47674507 Msa1251500:three_prime_UTR 15.0%
!! CTAATTATTTACAAATACAA+AGG - chr8_2:47674158-47674177 None:intergenic 15.0%
!!! AATTGTTTTTGAGTAAAAAA+TGG + chr8_2:47674276-47674295 Msa1251500:three_prime_UTR 15.0%
!! ATATATTAAAGAGATCTTAA+TGG + chr8_2:47674488-47674507 Msa1251500:three_prime_UTR 15.0%
!! ATTTATATAGAGTATGGAAA+TGG - chr8_2:47673304-47673323 None:intergenic 20.0%
!! AACTAGTGTGAAAATTAAAA+GGG - chr8_2:47673730-47673749 None:intergenic 20.0%
!! AAACTAGTGTGAAAATTAAA+AGG - chr8_2:47673731-47673750 None:intergenic 20.0%
!! AGAAAAAAGTCTAAGAATAA+TGG - chr8_2:47673760-47673779 None:intergenic 20.0%
!! ATTTACAAATACAAAGGAAT+CGG - chr8_2:47674152-47674171 None:intergenic 20.0%
!!! TATGTTTTTATCATTTTCCT+AGG + chr8_2:47674252-47674271 Msa1251500:three_prime_UTR 20.0%
!! ATTTATATAGAGTATGGAAA+TGG - chr8_2:47673304-47673323 None:intergenic 20.0%
!! AACTAGTGTGAAAATTAAAA+GGG - chr8_2:47673730-47673749 None:intergenic 20.0%
!! AAACTAGTGTGAAAATTAAA+AGG - chr8_2:47673731-47673750 None:intergenic 20.0%
!! AGAAAAAAGTCTAAGAATAA+TGG - chr8_2:47673760-47673779 None:intergenic 20.0%
!! ATTTACAAATACAAAGGAAT+CGG - chr8_2:47674152-47674171 None:intergenic 20.0%
!!! TATGTTTTTATCATTTTCCT+AGG + chr8_2:47674252-47674271 Msa1251500:three_prime_UTR 20.0%
!! TGAGGTATTTATATAGAGTA+TGG - chr8_2:47673310-47673329 None:intergenic 25.0%
!!! TAACTTTTGGAATGTGAATT+TGG - chr8_2:47673369-47673388 None:intergenic 25.0%
! ACAACAAAAACAAAACACAA+TGG + chr8_2:47673470-47673489 Msa1251500:exon 25.0%
! AAAAATGATGATCAAGAGAA+GGG - chr8_2:47673568-47673587 None:intergenic 25.0%
! TAAAAATGATGATCAAGAGA+AGG - chr8_2:47673569-47673588 None:intergenic 25.0%
! TATTTGATGAATGACTTTGA+GGG - chr8_2:47673668-47673687 None:intergenic 25.0%
! TTATTTGATGAATGACTTTG+AGG - chr8_2:47673669-47673688 None:intergenic 25.0%
!!! TAGTTTCTAATGTTGTTTCA+TGG + chr8_2:47673958-47673977 Msa1251500:intron 25.0%
! TTACTCAAAAACAATTTCCT+AGG - chr8_2:47674272-47674291 None:intergenic 25.0%
!!! TGTTTTTGAGTAAAAAATGG+TGG + chr8_2:47674279-47674298 Msa1251500:three_prime_UTR 25.0%
!!! CATGTTTTTTGTGAAGAAAA+TGG + chr8_2:47674305-47674324 Msa1251500:three_prime_UTR 25.0%
! ATGAGCAACAAAAAATGAAT+AGG + chr8_2:47674374-47674393 Msa1251500:three_prime_UTR 25.0%
! CAACAAAAAATGAATAGGTT+AGG + chr8_2:47674379-47674398 Msa1251500:three_prime_UTR 25.0%
! TTGAATAGGATGAAATGTAA+TGG - chr8_2:47674430-47674449 None:intergenic 25.0%
!!! ATTTTAGTTTCAGCTCTAAA+TGG + chr8_2:47674518-47674537 Msa1251500:three_prime_UTR 25.0%
!! TGAGGTATTTATATAGAGTA+TGG - chr8_2:47673310-47673329 None:intergenic 25.0%
!!! TAACTTTTGGAATGTGAATT+TGG - chr8_2:47673369-47673388 None:intergenic 25.0%
! ACAACAAAAACAAAACACAA+TGG + chr8_2:47673470-47673489 Msa1251500:exon 25.0%
! AAAAATGATGATCAAGAGAA+GGG - chr8_2:47673568-47673587 None:intergenic 25.0%
! TAAAAATGATGATCAAGAGA+AGG - chr8_2:47673569-47673588 None:intergenic 25.0%
! TATTTGATGAATGACTTTGA+GGG - chr8_2:47673668-47673687 None:intergenic 25.0%
! TTATTTGATGAATGACTTTG+AGG - chr8_2:47673669-47673688 None:intergenic 25.0%
!!! TAGTTTCTAATGTTGTTTCA+TGG + chr8_2:47673958-47673977 Msa1251500:intron 25.0%
! TTACTCAAAAACAATTTCCT+AGG - chr8_2:47674272-47674291 None:intergenic 25.0%
!!! TGTTTTTGAGTAAAAAATGG+TGG + chr8_2:47674279-47674298 Msa1251500:three_prime_UTR 25.0%
!!! CATGTTTTTTGTGAAGAAAA+TGG + chr8_2:47674305-47674324 Msa1251500:three_prime_UTR 25.0%
! ATGAGCAACAAAAAATGAAT+AGG + chr8_2:47674374-47674393 Msa1251500:three_prime_UTR 25.0%
! CAACAAAAAATGAATAGGTT+AGG + chr8_2:47674379-47674398 Msa1251500:three_prime_UTR 25.0%
! TTGAATAGGATGAAATGTAA+TGG - chr8_2:47674430-47674449 None:intergenic 25.0%
!!! ATTTTAGTTTCAGCTCTAAA+TGG + chr8_2:47674518-47674537 Msa1251500:three_prime_UTR 25.0%
GAGTATGGAAATGGAAAATT+TGG - chr8_2:47673295-47673314 None:intergenic 30.0%
TATAATGTGTGTGTTTGTGT+AGG - chr8_2:47673342-47673361 None:intergenic 30.0%
!!! TTTTGGAATGTGAATTTGGA+GGG - chr8_2:47673365-47673384 None:intergenic 30.0%
AACACAAAGAAGGAAAAGAA+AGG - chr8_2:47673406-47673425 None:intergenic 30.0%
!!! ATCATCATTTTTAGCTTGAG+TGG + chr8_2:47673576-47673595 Msa1251500:CDS 30.0%
! GGTGTTATCTAATATACGTA+CGG - chr8_2:47673709-47673728 None:intergenic 30.0%
!! TGTTGTTTCATGGATTGATT+AGG + chr8_2:47673968-47673987 Msa1251500:intron 30.0%
ATTAGGAATTGAAGCAAAAC+AGG + chr8_2:47673985-47674004 Msa1251500:intron 30.0%
TTAGGAATTGAAGCAAAACA+GGG + chr8_2:47673986-47674005 Msa1251500:intron 30.0%
GACAATTTGACACAACAAAA+CGG - chr8_2:47674224-47674243 None:intergenic 30.0%
!!! GTTTTTTGTGAAGAAAATGG+TGG + chr8_2:47674308-47674327 Msa1251500:three_prime_UTR 30.0%
AAATGAATAGGTTAGGTAGA+AGG + chr8_2:47674386-47674405 Msa1251500:three_prime_UTR 30.0%
AGGATTGAATAGGATTGAAT+AGG - chr8_2:47674444-47674463 None:intergenic 30.0%
ACATTACATACCAAAACACA+AGG - chr8_2:47674464-47674483 None:intergenic 30.0%
TATGGAAATGGAAAATTTGG+AGG - chr8_2:47673292-47673311 None:intergenic 30.0%
GAGTATGGAAATGGAAAATT+TGG - chr8_2:47673295-47673314 None:intergenic 30.0%
TATAATGTGTGTGTTTGTGT+AGG - chr8_2:47673342-47673361 None:intergenic 30.0%
!!! TTTTGGAATGTGAATTTGGA+GGG - chr8_2:47673365-47673384 None:intergenic 30.0%
AACACAAAGAAGGAAAAGAA+AGG - chr8_2:47673406-47673425 None:intergenic 30.0%
!!! ATCATCATTTTTAGCTTGAG+TGG + chr8_2:47673576-47673595 Msa1251500:CDS 30.0%
! GGTGTTATCTAATATACGTA+CGG - chr8_2:47673709-47673728 None:intergenic 30.0%
!! TGTTGTTTCATGGATTGATT+AGG + chr8_2:47673968-47673987 Msa1251500:intron 30.0%
ATTAGGAATTGAAGCAAAAC+AGG + chr8_2:47673985-47674004 Msa1251500:intron 30.0%
TTAGGAATTGAAGCAAAACA+GGG + chr8_2:47673986-47674005 Msa1251500:intron 30.0%
GACAATTTGACACAACAAAA+CGG - chr8_2:47674224-47674243 None:intergenic 30.0%
!!! GTTTTTTGTGAAGAAAATGG+TGG + chr8_2:47674308-47674327 Msa1251500:three_prime_UTR 30.0%
AAATGAATAGGTTAGGTAGA+AGG + chr8_2:47674386-47674405 Msa1251500:three_prime_UTR 30.0%
AGGATTGAATAGGATTGAAT+AGG - chr8_2:47674444-47674463 None:intergenic 30.0%
ACATTACATACCAAAACACA+AGG - chr8_2:47674464-47674483 None:intergenic 30.0%
!!! CTTTTGGAATGTGAATTTGG+AGG - chr8_2:47673366-47673385 None:intergenic 35.0%
! AGGAAGGGAAGAATAACTTT+TGG - chr8_2:47673382-47673401 None:intergenic 35.0%
AAGGAAAAGAAAGGAAGGAA+GGG - chr8_2:47673397-47673416 None:intergenic 35.0%
CAAAGAAGGAAAAGAAAGGA+AGG - chr8_2:47673402-47673421 None:intergenic 35.0%
ATCTGAAAAAGATTGGCGTA+AGG - chr8_2:47673640-47673659 None:intergenic 35.0%
GGTCAGAATCTGAAAAAGAT+TGG - chr8_2:47673647-47673666 None:intergenic 35.0%
GTTATCTAATATACGTACGG+TGG - chr8_2:47673706-47673725 None:intergenic 35.0%
TAGGAATTGAAGCAAAACAG+GGG + chr8_2:47673987-47674006 Msa1251500:intron 35.0%
! ACAGTCACAACAATGTTTTC+CGG - chr8_2:47674092-47674111 None:intergenic 35.0%
AATTTGACACAACAAAACGG+TGG - chr8_2:47674221-47674240 None:intergenic 35.0%
CCAAAACACAAGGATTGAAT+AGG - chr8_2:47674454-47674473 None:intergenic 35.0%
! CCTATTCAATCCTTGTGTTT+TGG + chr8_2:47674451-47674470 Msa1251500:three_prime_UTR 35.0%
!!! CTTTTGGAATGTGAATTTGG+AGG - chr8_2:47673366-47673385 None:intergenic 35.0%
! AGGAAGGGAAGAATAACTTT+TGG - chr8_2:47673382-47673401 None:intergenic 35.0%
AAGGAAAAGAAAGGAAGGAA+GGG - chr8_2:47673397-47673416 None:intergenic 35.0%
CAAAGAAGGAAAAGAAAGGA+AGG - chr8_2:47673402-47673421 None:intergenic 35.0%
ATCTGAAAAAGATTGGCGTA+AGG - chr8_2:47673640-47673659 None:intergenic 35.0%
GGTCAGAATCTGAAAAAGAT+TGG - chr8_2:47673647-47673666 None:intergenic 35.0%
GTTATCTAATATACGTACGG+TGG - chr8_2:47673706-47673725 None:intergenic 35.0%
TAGGAATTGAAGCAAAACAG+GGG + chr8_2:47673987-47674006 Msa1251500:intron 35.0%
! ACAGTCACAACAATGTTTTC+CGG - chr8_2:47674092-47674111 None:intergenic 35.0%
AATTTGACACAACAAAACGG+TGG - chr8_2:47674221-47674240 None:intergenic 35.0%
CCAAAACACAAGGATTGAAT+AGG - chr8_2:47674454-47674473 None:intergenic 35.0%
! CCTATTCAATCCTTGTGTTT+TGG + chr8_2:47674451-47674470 Msa1251500:three_prime_UTR 35.0%
AATGTGTGTGTTTGTGTAGG+TGG - chr8_2:47673339-47673358 None:intergenic 40.0%
GAAGGAAAAGAAAGGAAGGA+AGG - chr8_2:47673398-47673417 None:intergenic 40.0%
GTGTTTGAGGAACACAAAGA+AGG - chr8_2:47673416-47673435 None:intergenic 40.0%
CTCTTACACTCATGTGTTTG+AGG - chr8_2:47673429-47673448 None:intergenic 40.0%
CTCAAACACATGAGTGTAAG+AGG + chr8_2:47673427-47673446 Msa1251500:five_prime_UTR 40.0%
AATCCTCTGCATTCCTTACA+CGG + chr8_2:47673824-47673843 Msa1251500:intron 40.0%
!! AGTTTTTCAGTGATGATGCC+AGG + chr8_2:47674014-47674033 Msa1251500:CDS 40.0%
!! GTTTTTCAGTGATGATGCCA+GGG + chr8_2:47674015-47674034 Msa1251500:CDS 40.0%
!! TTTTTCAGTGATGATGCCAG+GGG + chr8_2:47674016-47674035 Msa1251500:CDS 40.0%
TACAAAGGAATCGGTAGTTG+CGG - chr8_2:47674143-47674162 None:intergenic 40.0%
AATGTGTGTGTTTGTGTAGG+TGG - chr8_2:47673339-47673358 None:intergenic 40.0%
GAAGGAAAAGAAAGGAAGGA+AGG - chr8_2:47673398-47673417 None:intergenic 40.0%
GTGTTTGAGGAACACAAAGA+AGG - chr8_2:47673416-47673435 None:intergenic 40.0%
CTCTTACACTCATGTGTTTG+AGG - chr8_2:47673429-47673448 None:intergenic 40.0%
CTCAAACACATGAGTGTAAG+AGG + chr8_2:47673427-47673446 Msa1251500:five_prime_UTR 40.0%
AATCCTCTGCATTCCTTACA+CGG + chr8_2:47673824-47673843 Msa1251500:intron 40.0%
!! AGTTTTTCAGTGATGATGCC+AGG + chr8_2:47674014-47674033 Msa1251500:CDS 40.0%
!! GTTTTTCAGTGATGATGCCA+GGG + chr8_2:47674015-47674034 Msa1251500:CDS 40.0%
!! TTTTTCAGTGATGATGCCAG+GGG + chr8_2:47674016-47674035 Msa1251500:CDS 40.0%
TACAAAGGAATCGGTAGTTG+CGG - chr8_2:47674143-47674162 None:intergenic 40.0%
TGTGTTTGTGTAGGTGGTGA+TGG - chr8_2:47673333-47673352 None:intergenic 45.0%
GGGATGGTGTAAGATGATCT+TGG - chr8_2:47673500-47673519 None:intergenic 45.0%
TCCTCTCTTGTTGCTACCAT+TGG + chr8_2:47673601-47673620 Msa1251500:CDS 45.0%
CCTCTCTTGTTGCTACCATT+GGG + chr8_2:47673602-47673621 Msa1251500:CDS 45.0%
AGGAACGAACTTTGTCCCAA+TGG - chr8_2:47673620-47673639 None:intergenic 45.0%
GCAGTATGTTACACCGTGTA+AGG - chr8_2:47673840-47673859 None:intergenic 45.0%
GCACACTGGTGTAATATCGA+CGG - chr8_2:47673879-47673898 None:intergenic 45.0%
CATGGCATCGCTATGAACTT+TGG - chr8_2:47674050-47674069 None:intergenic 45.0%
TGTGTTTGTGTAGGTGGTGA+TGG - chr8_2:47673333-47673352 None:intergenic 45.0%
GGGATGGTGTAAGATGATCT+TGG - chr8_2:47673500-47673519 None:intergenic 45.0%
TCCTCTCTTGTTGCTACCAT+TGG + chr8_2:47673601-47673620 Msa1251500:CDS 45.0%
CCTCTCTTGTTGCTACCATT+GGG + chr8_2:47673602-47673621 Msa1251500:CDS 45.0%
AGGAACGAACTTTGTCCCAA+TGG - chr8_2:47673620-47673639 None:intergenic 45.0%
GCAGTATGTTACACCGTGTA+AGG - chr8_2:47673840-47673859 None:intergenic 45.0%
GCACACTGGTGTAATATCGA+CGG - chr8_2:47673879-47673898 None:intergenic 45.0%
CATGGCATCGCTATGAACTT+TGG - chr8_2:47674050-47674069 None:intergenic 45.0%
!! TTGTGTAGGTGGTGATGGTG+AGG - chr8_2:47673328-47673347 None:intergenic 50.0%
TCATCTTACACCATCCCACG+TGG + chr8_2:47673503-47673522 Msa1251500:CDS 50.0%
AGTGCCCAAAGGGAAACCAA+GGG - chr8_2:47673544-47673563 None:intergenic 50.0%
CCCAATGGTAGCAACAAGAG+AGG - chr8_2:47673605-47673624 None:intergenic 50.0%
ACACCGTGTAAGGAATGCAG+AGG - chr8_2:47673830-47673849 None:intergenic 50.0%
AATCCTCTGCATCAGCACAC+TGG - chr8_2:47673893-47673912 None:intergenic 50.0%
AACTTTGGCACATCATCCCC+TGG - chr8_2:47674035-47674054 None:intergenic 50.0%
CATGTCCGTGTCAACCATCA+CGG + chr8_2:47674066-47674085 Msa1251500:CDS 50.0%
! ACAATGTTTTCCGGCCGTGA+TGG - chr8_2:47674083-47674102 None:intergenic 50.0%
AAAGGAATCGGTAGTTGCGG+TGG - chr8_2:47674140-47674159 None:intergenic 50.0%
!! TTGTGTAGGTGGTGATGGTG+AGG - chr8_2:47673328-47673347 None:intergenic 50.0%
TCATCTTACACCATCCCACG+TGG + chr8_2:47673503-47673522 Msa1251500:CDS 50.0%
AGTGCCCAAAGGGAAACCAA+GGG - chr8_2:47673544-47673563 None:intergenic 50.0%
CCCAATGGTAGCAACAAGAG+AGG - chr8_2:47673605-47673624 None:intergenic 50.0%
ACACCGTGTAAGGAATGCAG+AGG - chr8_2:47673830-47673849 None:intergenic 50.0%
AATCCTCTGCATCAGCACAC+TGG - chr8_2:47673893-47673912 None:intergenic 50.0%
AACTTTGGCACATCATCCCC+TGG - chr8_2:47674035-47674054 None:intergenic 50.0%
CATGTCCGTGTCAACCATCA+CGG + chr8_2:47674066-47674085 Msa1251500:CDS 50.0%
! ACAATGTTTTCCGGCCGTGA+TGG - chr8_2:47674083-47674102 None:intergenic 50.0%
AAAGGAATCGGTAGTTGCGG+TGG - chr8_2:47674140-47674159 None:intergenic 50.0%
CTAGATGCATCCACGTGGGA+TGG - chr8_2:47673516-47673535 None:intergenic 55.0%
CGGTCTAGATGCATCCACGT+GGG - chr8_2:47673520-47673539 None:intergenic 55.0%
ACGGTCTAGATGCATCCACG+TGG - chr8_2:47673521-47673540 None:intergenic 55.0%
GATGCATCTAGACCGTCCCT+TGG + chr8_2:47673525-47673544 Msa1251500:CDS 55.0%
ACCGTCCCTTGGTTTCCCTT+TGG + chr8_2:47673536-47673555 Msa1251500:CDS 55.0%
CCCAAAGGGAAACCAAGGGA+CGG - chr8_2:47673540-47673559 None:intergenic 55.0%
CCGTCCCTTGGTTTCCCTTT+GGG + chr8_2:47673537-47673556 Msa1251500:CDS 55.0%
CAGTGCCCAAAGGGAAACCA+AGG - chr8_2:47673545-47673564 None:intergenic 55.0%
AGAGAAGGGCAGTGCCCAAA+GGG - chr8_2:47673554-47673573 None:intergenic 55.0%
AAGAGAAGGGCAGTGCCCAA+AGG - chr8_2:47673555-47673574 None:intergenic 55.0%
! ACACCAGTGTGCTGATGCAG+AGG + chr8_2:47673887-47673906 Msa1251500:intron 55.0%
CGTGATGGTTGACACGGACA+TGG - chr8_2:47674068-47674087 None:intergenic 55.0%
!! GGTAGTTGCGGTGGCTTTAG+CGG - chr8_2:47674131-47674150 None:intergenic 55.0%
CTAGATGCATCCACGTGGGA+TGG - chr8_2:47673516-47673535 None:intergenic 55.0%
CGGTCTAGATGCATCCACGT+GGG - chr8_2:47673520-47673539 None:intergenic 55.0%
ACGGTCTAGATGCATCCACG+TGG - chr8_2:47673521-47673540 None:intergenic 55.0%
GATGCATCTAGACCGTCCCT+TGG + chr8_2:47673525-47673544 Msa1251500:CDS 55.0%
ACCGTCCCTTGGTTTCCCTT+TGG + chr8_2:47673536-47673555 Msa1251500:CDS 55.0%
CCCAAAGGGAAACCAAGGGA+CGG - chr8_2:47673540-47673559 None:intergenic 55.0%
CCGTCCCTTGGTTTCCCTTT+GGG + chr8_2:47673537-47673556 Msa1251500:CDS 55.0%
CAGTGCCCAAAGGGAAACCA+AGG - chr8_2:47673545-47673564 None:intergenic 55.0%
AGAGAAGGGCAGTGCCCAAA+GGG - chr8_2:47673554-47673573 None:intergenic 55.0%
AAGAGAAGGGCAGTGCCCAA+AGG - chr8_2:47673555-47673574 None:intergenic 55.0%
! ACACCAGTGTGCTGATGCAG+AGG + chr8_2:47673887-47673906 Msa1251500:intron 55.0%
CGTGATGGTTGACACGGACA+TGG - chr8_2:47674068-47674087 None:intergenic 55.0%
!! GGTAGTTGCGGTGGCTTTAG+CGG - chr8_2:47674131-47674150 None:intergenic 55.0%
TCCGTGTCAACCATCACGGC+CGG + chr8_2:47674070-47674089 Msa1251500:CDS 60.0%
TCCGGCCGTGATGGTTGACA+CGG - chr8_2:47674074-47674093 None:intergenic 60.0%
!! AGTTGCGGTGGCTTTAGCGG+TGG - chr8_2:47674128-47674147 None:intergenic 60.0%
TCCGTGTCAACCATCACGGC+CGG + chr8_2:47674070-47674089 Msa1251500:CDS 60.0%
TCCGGCCGTGATGGTTGACA+CGG - chr8_2:47674074-47674093 None:intergenic 60.0%
!! AGTTGCGGTGGCTTTAGCGG+TGG - chr8_2:47674128-47674147 None:intergenic 60.0%
!! TGCGGTGGCTTTAGCGGTGG+CGG - chr8_2:47674125-47674144 None:intergenic 65.0%
!! TGCGGTGGCTTTAGCGGTGG+CGG - chr8_2:47674125-47674144 None:intergenic 65.0%
!! GGTGGCTTTAGCGGTGGCGG+CGG - chr8_2:47674122-47674141 None:intergenic 70.0%
!! GGTGGCTTTAGCGGTGGCGG+CGG - chr8_2:47674122-47674141 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 47673290 47674575 47673290 ID=Msa1251500;Name=Msa1251500
chr8_2 mRNA 47673290 47674575 47673290 ID=Msa1251500-mRNA-1;Parent=Msa1251500;Name=Msa1251500-mRNA-1;_AED=0.00;_eAED=0.00;_QI=199|1|1|1|1|1|2|406|132
chr8_2 exon 47673290 47673707 47673290 ID=Msa1251500-mRNA-1:exon:14388;Parent=Msa1251500-mRNA-1
chr8_2 exon 47673990 47674575 47673990 ID=Msa1251500-mRNA-1:exon:14389;Parent=Msa1251500-mRNA-1
chr8_2 five_prime_UTR 47673290 47673488 47673290 ID=Msa1251500-mRNA-1:five_prime_utr;Parent=Msa1251500-mRNA-1
chr8_2 CDS 47673489 47673707 47673489 ID=Msa1251500-mRNA-1:cds;Parent=Msa1251500-mRNA-1
chr8_2 CDS 47673990 47674169 47673990 ID=Msa1251500-mRNA-1:cds;Parent=Msa1251500-mRNA-1
chr8_2 three_prime_UTR 47674170 47674575 47674170 ID=Msa1251500-mRNA-1:three_prime_utr;Parent=Msa1251500-mRNA-1
Gene Sequence

>Msa1251500

ATGGAGAGCCAAGATCATCTTACACCATCCCACGTGGATGCATCTAGACCGTCCCTTGGTTTCCCTTTGGGCACTGCCCTTCTCTTGATCATCATTTTTAGCTTGAGTGGTATCCTCTCTTGTTGCTACCATTGGGACAAAGTTCGTTCCTTACGCCAATCTTTTTCAGATTCTGACCCTCAAAGTCATTCATCAAATAAATCTAAACTTTACTCCACCGAATTGAAGCAAAACAGGGGAGAAAGTTTTTCAGTGATGATGCCAGGGGATGATGTGCCAAAGTTCATAGCGATGCCATGTCCGTGTCAACCATCACGGCCGGAAAACATTGTTGTGACTGTCGAGAAGCCGCCGCCACCGCTAAAGCCACCGCAACTACCGATTCCTTTGTATTTGTAA

Protein sequence

>Msa1251500

MESQDHLTPSHVDASRPSLGFPLGTALLLIIIFSLSGILSCCYHWDKVRSLRQSFSDSDPQSHSSNKSKLYSTELKQNRGESFSVMMPGDDVPKFIAMPCPCQPSRPENIVVTVEKPPPPLKPPQLPIPLYL*