AlfalfaGEDB | Msa1251500

M. sativa cultivar zhongmu-4 / Msa1251500

KEGG: -
GO: GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1251500	XP_003628845.1	100.000	132	0	0	1	132	1	132	2.33e-90	268

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1251500	sp\|Q9LSK9\|Y5566_ARATH	59.559	136	50	3	1	131	1	136	7.56e-49	155

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1251500	G7LHT7	100.000	132	0	0	1	132	1	132	1.11e-90	268

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa1251500	-0.818485	1.912286e-52	-8.615850e-47
Msa0000610	Msa1251500	-0.827136	1.848476e-54	-8.615850e-47
Msa0003340	Msa1251500	-0.810143	1.334426e-50	-8.615850e-47
Msa0004180	Msa1251500	-0.809690	1.670482e-50	-8.615850e-47
Msa0007570	Msa1251500	-0.848038	7.904885e-60	-8.615850e-47
Msa0007810	Msa1251500	-0.824815	6.578981e-54	-8.615850e-47
Msa0009290	Msa1251500	0.844954	5.488360e-59	-8.615850e-47
Msa0009560	Msa1251500	-0.803821	2.902965e-49	-8.615850e-47
Msa0011060	Msa1251500	-0.825004	5.937858e-54	-8.615850e-47
Msa0011100	Msa1251500	-0.833903	4.081190e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1251500	MtrunA17_Chr8g0366891	100.000	132	0	0	1	132	1	132	2.15e-94	268
Msa1251500	MtrunA17_Chr5g0411511	63.934	122	38	4	1	117	4	124	6.41e-40	130
Msa1251500	MtrunA17_Chr5g0428121	34.400	125	66	3	1	116	1	118	3.78e-13	62.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1251500	AT5G65660.1	59.559	136	50	3	1	131	1	136	7.69e-50	155

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Find 60 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAATCGGTAGTTGCGG+TGG	0.608462	8_2:-47674137	None:intergenic
AAATGAATAGGTTAGGTAGA+AGG	0.409878	8_2:+47674386	Msa1251500:three_prime_UTR
AACACAAAGAAGGAAAAGAA+AGG	0.493341	8_2:-47673403	None:intergenic
AACTTTGGCACATCATCCCC+TGG	0.540201	8_2:-47674032	None:intergenic
AAGAGAAGGGCAGTGCCCAA+AGG	0.630791	8_2:-47673552	None:intergenic
AAGGAAAAGAAAGGAAGGAA+GGG	0.467322	8_2:-47673394	None:intergenic
AATGTGTGTGTTTGTGTAGG+TGG	0.487968	8_2:-47673336	None:intergenic
AATTTGACACAACAAAACGG+TGG	0.728129	8_2:-47674218	None:intergenic
ACATTACATACCAAAACACA+AGG	0.682439	8_2:-47674461	None:intergenic
ACCGTCCCTTGGTTTCCCTT+TGG	0.330496	8_2:+47673536	Msa1251500:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGTATGGAAATGGAAAATT+TGG	-	chr8_2:47673295-47673314	None:intergenic	30.0%
TATAATGTGTGTGTTTGTGT+AGG	-	chr8_2:47673342-47673361	None:intergenic	30.0%
AACACAAAGAAGGAAAAGAA+AGG	-	chr8_2:47673406-47673425	None:intergenic	30.0%
ATTAGGAATTGAAGCAAAAC+AGG	+	chr8_2:47673985-47674004	Msa1251500:intron	30.0%
TTAGGAATTGAAGCAAAACA+GGG	+	chr8_2:47673986-47674005	Msa1251500:intron	30.0%
GACAATTTGACACAACAAAA+CGG	-	chr8_2:47674224-47674243	None:intergenic	30.0%
AAATGAATAGGTTAGGTAGA+AGG	+	chr8_2:47674386-47674405	Msa1251500:three_prime_UTR	30.0%
AGGATTGAATAGGATTGAAT+AGG	-	chr8_2:47674444-47674463	None:intergenic	30.0%
ACATTACATACCAAAACACA+AGG	-	chr8_2:47674464-47674483	None:intergenic	30.0%
TATGGAAATGGAAAATTTGG+AGG	-	chr8_2:47673292-47673311	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	47673290	47674575	47673290	ID=Msa1251500;Name=Msa1251500
chr8_2	mRNA	47673290	47674575	47673290	ID=Msa1251500-mRNA-1;Parent=Msa1251500;Name=Msa1251500-mRNA-1;_AED=0.00;_eAED=0.00;_QI=199\|1\|1\|1\|1\|1\|2\|406\|132
chr8_2	exon	47673290	47673707	47673290	ID=Msa1251500-mRNA-1:exon:14388;Parent=Msa1251500-mRNA-1
chr8_2	exon	47673990	47674575	47673990	ID=Msa1251500-mRNA-1:exon:14389;Parent=Msa1251500-mRNA-1
chr8_2	five_prime_UTR	47673290	47673488	47673290	ID=Msa1251500-mRNA-1:five_prime_utr;Parent=Msa1251500-mRNA-1
chr8_2	CDS	47673489	47673707	47673489	ID=Msa1251500-mRNA-1:cds;Parent=Msa1251500-mRNA-1
chr8_2	CDS	47673990	47674169	47673990	ID=Msa1251500-mRNA-1:cds;Parent=Msa1251500-mRNA-1
chr8_2	three_prime_UTR	47674170	47674575	47674170	ID=Msa1251500-mRNA-1:three_prime_utr;Parent=Msa1251500-mRNA-1

Gene Sequence

>Msa1251500

ATGGAGAGCCAAGATCATCTTACACCATCCCACGTGGATGCATCTAGACCGTCCCTTGGTTTCCCTTTGGGCACTGCCCTTCTCTTGATCATCATTTTTAGCTTGAGTGGTATCCTCTCTTGTTGCTACCATTGGGACAAAGTTCGTTCCTTACGCCAATCTTTTTCAGATTCTGACCCTCAAAGTCATTCATCAAATAAATCTAAACTTTACTCCACCGAATTGAAGCAAAACAGGGGAGAAAGTTTTTCAGTGATGATGCCAGGGGATGATGTGCCAAAGTTCATAGCGATGCCATGTCCGTGTCAACCATCACGGCCGGAAAACATTGTTGTGACTGTCGAGAAGCCGCCGCCACCGCTAAAGCCACCGCAACTACCGATTCCTTTGTATTTGTAA

Protein sequence

>Msa1251500

MESQDHLTPSHVDASRPSLGFPLGTALLLIIIFSLSGILSCCYHWDKVRSLRQSFSDSDPQSHSSNKSKLYSTELKQNRGESFSVMMPGDDVPKFIAMPCPCQPSRPENIVVTVEKPPPPLKPPQLPIPLYL*