AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0236690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0236690 MtrunA17_Chr2g0285791 95.692 325 10 1 1 321 1 325 0.0 634
Msa0236690 MtrunA17_Chr6g0453121 48.085 235 110 4 82 314 126 350 5.44e-60 198
Msa0236690 MtrunA17_Chr6g0450671 42.208 308 147 11 15 314 39 323 1.12e-59 197
Msa0236690 MtrunA17_Chr7g0272621 36.517 178 103 5 129 305 147 315 3.59e-22 96.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0236690 AT4G18370.1 73.305 236 59 2 86 321 92 323 1.51e-124 360
Msa0236690 AT4G18370.2 71.751 177 46 2 86 262 92 264 6.79e-87 262
Msa0236690 AT4G18370.3 70.270 148 40 2 86 233 92 235 5.66e-70 218
Msa0236690 AT5G39830.1 46.835 237 108 5 82 313 116 339 2.82e-59 197
Msa0236690 AT3G27925.1 46.444 239 106 6 77 314 113 330 1.76e-57 192
Msa0236690 AT3G27925.2 46.444 239 106 6 77 314 113 330 1.76e-57 192
Msa0236690 AT5G39830.2 43.038 237 103 5 82 313 116 325 2.70e-51 175
Msa0236690 AT5G27660.2 37.288 177 99 6 129 303 149 315 2.48e-19 88.6
Msa0236690 AT5G27660.1 37.288 177 99 6 129 303 144 310 2.73e-19 88.2

Find 92 sgRNAs with CRISPR-Local

Find 403 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACCTTGTGCATTTGTTTC+AGG 0.129362 2_2:+9621201 Msa0236690:CDS
AGTCAATTCAATGTCTTTAA+TGG 0.134990 2_2:-9622258 None:intergenic
TCCAGGGAAGGGAAAATAAT+TGG 0.154649 2_2:+9623117 Msa0236690:CDS
GAAATAAAGCCTGTTGTTAT+TGG 0.182109 2_2:+9625022 Msa0236690:CDS
GGCTTCATTTGGGATAAATT+TGG 0.201587 2_2:+9622356 Msa0236690:CDS
CAAGTCTTGTAGTTGCTTCT+TGG 0.214119 2_2:+9621098 Msa0236690:CDS
TTTCAGATTCTAATTGCTTA+TGG 0.218025 2_2:-9620917 None:intergenic
CTTTGATAGCCCCTCCATTT+GGG 0.261671 2_2:-9625413 None:intergenic
TTTAGCTACAACATGGTAAT+TGG 0.266241 2_2:-9622936 None:intergenic
GACTTCATTAGAAGAGGTTT+TGG 0.274618 2_2:-9622288 None:intergenic
TTTCAAAACCTATTAGTATA+AGG 0.279957 2_2:-9626750 None:intergenic
CCTTTGATAGCCCCTCCATT+TGG 0.294286 2_2:-9625414 None:intergenic
ATGCAGGTGGTCAGTGGTTT+AGG 0.298156 2_2:+9625375 Msa0236690:intron
GTACCATCCCTTATTGTATA+TGG 0.304932 2_2:+9626723 Msa0236690:CDS
TTTGCCATTGGGAATCCTTA+TGG 0.306916 2_2:+9625079 Msa0236690:CDS
ATGGAACACCTTATACTAAT+AGG 0.308611 2_2:+9626742 Msa0236690:CDS
GCACTGGTTCAGGCTTCATT+TGG 0.338673 2_2:+9622345 Msa0236690:CDS
GAGAGGGAAAGAGGTTCGTT+TGG 0.345266 2_2:-9620991 None:intergenic
AAAGTGGAAGGCACTGGTTC+AGG 0.378478 2_2:+9622335 Msa0236690:CDS
CACTGGTTCAGGCTTCATTT+GGG 0.391449 2_2:+9622346 Msa0236690:CDS
CCAGGGAAGGGAAAATAATT+GGG 0.392744 2_2:+9623118 Msa0236690:CDS
GACAGAGTTGCTTTGCCATT+GGG 0.398813 2_2:+9625068 Msa0236690:CDS
GACTCTCATGGCCATGTTGT+TGG 0.403469 2_2:+9626374 Msa0236690:CDS
TATTTGCAGGTTGATGTTGA+TGG 0.405637 2_2:+9624995 Msa0236690:intron
AAGGTGTTCCATATACAATA+AGG 0.408680 2_2:-9626731 None:intergenic
TAGTGGTTTACAACGTTGTA+AGG 0.411713 2_2:+9622973 Msa0236690:CDS
CGGATGTTAACAGGAAATTC+AGG 0.411871 2_2:+9626338 Msa0236690:intron
TATGAGAATACTCTCACAAC+AGG 0.425005 2_2:+9625103 Msa0236690:CDS
AGAGAAAACATTGTGATGAT+TGG 0.430574 2_2:-9620968 None:intergenic
AAGACTTGAACTGAAGACTA+TGG 0.430823 2_2:-9621083 None:intergenic
TTAGATTCACCAATAACAAC+AGG 0.438438 2_2:-9625031 None:intergenic
ATAGAAGAATATGAGAGAAA+AGG 0.444303 2_2:+9620872 Msa0236690:five_prime_UTR
GTTGTGTTGAATTGAAATTA+AGG 0.445017 2_2:-9621129 None:intergenic
GGTGGGAAGGGTCTTTGTTG+AGG 0.458920 2_2:-9621032 None:intergenic
TCAGGTACCGGAGCTTCATC+AGG 0.470733 2_2:+9626660 Msa0236690:intron
AGGTGTTCCATATACAATAA+GGG 0.471453 2_2:-9626730 None:intergenic
ATTACCTTTCCTTGTGAAGG+TGG 0.475479 2_2:-9626408 None:intergenic
CCTGGAAAAGTTATTCCCAT+TGG 0.481148 2_2:-9623100 None:intergenic
CGCGAGATACCTTCCCCAAA+TGG 0.481655 2_2:+9625399 Msa0236690:CDS
TGAGGATGAAGATGCAAAAG+TGG 0.487615 2_2:+9622319 Msa0236690:CDS
TATATTACCTTTCCTTGTGA+AGG 0.491019 2_2:-9626411 None:intergenic
AGTAGCTGTAACAGTGGTGG+TGG 0.505438 2_2:-9621050 None:intergenic
TGTAACAGTGGTGGTGGGAA+GGG 0.505477 2_2:-9621044 None:intergenic
ATGAGTAGTTAGCGTTGGAG+AGG 0.508532 2_2:-9621008 None:intergenic
TTAGCGTTGGAGAGGGAAAG+AGG 0.508546 2_2:-9621000 None:intergenic
CTGTAACAGTGGTGGTGGGA+AGG 0.510652 2_2:-9621045 None:intergenic
GGACAGAGTTGCTTTGCCAT+TGG 0.512294 2_2:+9625067 Msa0236690:CDS
TATTCCCATTGGCATCAACT+AGG 0.514434 2_2:-9623089 None:intergenic
TAGCATGACTTCATTAGAAG+AGG 0.522603 2_2:-9622294 None:intergenic
AGAGTATTCTCATATCCATA+AGG 0.524491 2_2:-9625094 None:intergenic
GAGGAATGAGTAGTTAGCGT+TGG 0.524538 2_2:-9621013 None:intergenic
CTGAAAGAGAAAGTGTTGTA+TGG 0.530063 2_2:+9620934 Msa0236690:exon
AGTTGTTGTGAAAGTGAAAG+TGG 0.535180 2_2:-9621151 None:intergenic
GTTAACTCCTGATGAAGCTC+CGG 0.541628 2_2:-9626667 None:intergenic
ACTGATGCAGCTATTAATGC+AGG 0.543845 2_2:+9625447 Msa0236690:CDS
ACTTCTAATTACAGAGTCGA+TGG 0.545161 2_2:-9626700 None:intergenic
TGAGTAGTTAGCGTTGGAGA+GGG 0.552406 2_2:-9621007 None:intergenic
AGAATATGAGAGAAAAGGAA+TGG 0.562377 2_2:+9620877 Msa0236690:five_prime_UTR
GGACCATTGATTGACTCTCA+TGG 0.566441 2_2:+9626362 Msa0236690:CDS
TTTGATAGCCCCTCCATTTG+GGG 0.566803 2_2:-9625412 None:intergenic
TGGCCATGAGAGTCAATCAA+TGG 0.568108 2_2:-9626365 None:intergenic
ATATGATCTAGCTGTTCTGA+AGG 0.569824 2_2:+9623152 Msa0236690:CDS
AGAACAGCTAGATCATATGA+TGG 0.573622 2_2:-9623147 None:intergenic
CCAAATGGAGGGGCTATCAA+AGG 0.574726 2_2:+9625414 Msa0236690:CDS
AGATACCTTCCCCAAATGGA+GGG 0.575115 2_2:+9625403 Msa0236690:CDS
ATAGCCCCTCCATTTGGGGA+AGG 0.577157 2_2:-9625408 None:intergenic
GATGCAAAAGTGGAAGGCAC+TGG 0.579458 2_2:+9622329 Msa0236690:CDS
GAATCTAAGAATTTACATGT+TGG 0.582777 2_2:+9625046 Msa0236690:CDS
ACGTTGTAAACCACTAGTAT+CGG 0.589338 2_2:-9622966 None:intergenic
GAGATACCTTCCCCAAATGG+AGG 0.591441 2_2:+9625402 Msa0236690:CDS
TAAATTATGCAGGTGGTCAG+TGG 0.593859 2_2:+9625369 Msa0236690:intron
ACAGCCACCTTCACAAGGAA+AGG 0.596510 2_2:+9626404 Msa0236690:CDS
GATGAAGATGCAAAAGTGGA+AGG 0.620131 2_2:+9622323 Msa0236690:CDS
CTGTGTTTACTCCAACAACA+TGG 0.626621 2_2:-9626385 None:intergenic
CTTCTAATTACAGAGTCGAT+GGG 0.626746 2_2:-9626699 None:intergenic
TAATGAAGTCATGCTAGATG+AGG 0.628611 2_2:+9622301 Msa0236690:CDS
CTTAGTAGCTGTAACAGTGG+TGG 0.631185 2_2:-9621053 None:intergenic
TCTTTAATGGAAACAACAGA+TGG 0.633125 2_2:-9622245 None:intergenic
GTTCCATATACAATAAGGGA+TGG 0.636651 2_2:-9626726 None:intergenic
TAAACACAGCCACCTTCACA+AGG 0.639628 2_2:+9626399 Msa0236690:CDS
ATGAGAATACTCTCACAACA+GGG 0.643517 2_2:+9625104 Msa0236690:CDS
GATACCTTCCCCAAATGGAG+GGG 0.644193 2_2:+9625404 Msa0236690:CDS
GTAGCTGTAACAGTGGTGGT+GGG 0.650253 2_2:-9621049 None:intergenic
TCGCTTAGTAGCTGTAACAG+TGG 0.652682 2_2:-9621056 None:intergenic
TAGCTAGTTTAGCTACAACA+TGG 0.693427 2_2:-9622943 None:intergenic
ATATCCATAAGGATTCCCAA+TGG 0.696972 2_2:-9625083 None:intergenic
AAACTAGCTACCGATACTAG+TGG 0.701856 2_2:+9622956 Msa0236690:CDS
AAACCTGAAACAAATGCACA+AGG 0.703790 2_2:-9621204 None:intergenic
ATGTTAACAGGAAATTCAGG+CGG 0.717135 2_2:+9626341 Msa0236690:intron
TGAGAATACTCTCACAACAG+GGG 0.741501 2_2:+9625105 Msa0236690:CDS
CCTGAAACAAATGCACAAGG+TGG 0.756569 2_2:-9621201 None:intergenic
CATTTGGGGAAGGTATCTCG+CGG 0.758593 2_2:-9625398 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CGTATTTTTTTTTTAAATAA+TGG - chr2_2:9622476-9622495 None:intergenic 10.0%
!! ATTATAAAAAATAGTGAAAG+GGG - chr2_2:9621248-9621267 None:intergenic 15.0%
!! CATTATAAAAAATAGTGAAA+GGG - chr2_2:9621249-9621268 None:intergenic 15.0%
!! ACATTATAAAAAATAGTGAA+AGG - chr2_2:9621250-9621269 None:intergenic 15.0%
!!! TATTTTTTATAATGTAGTGT+TGG + chr2_2:9621255-9621274 Msa0236690:intron 15.0%
!!! ATTTTTTATAATGTAGTGTT+GGG + chr2_2:9621256-9621275 Msa0236690:intron 15.0%
!!! TTTAATCAAATTTTGCAATT+GGG + chr2_2:9621328-9621347 Msa0236690:intron 15.0%
!!! TTCTTGAACTAATTTTTTTT+GGG + chr2_2:9621386-9621405 Msa0236690:intron 15.0%
!!! TATTATATTTCTAAAGTTCA+TGG + chr2_2:9621641-9621660 Msa0236690:intron 15.0%
!! AAAAATAATAATCATATGTC+AGG - chr2_2:9624737-9624756 None:intergenic 15.0%
!! CAATAGTTAGTTATAAAAAT+TGG - chr2_2:9624804-9624823 None:intergenic 15.0%
!!! TTTTCTTAATATGTGTAAAA+TGG - chr2_2:9625604-9625623 None:intergenic 15.0%
!! ATTAGTAGATAAGTATAAAA+TGG + chr2_2:9625824-9625843 Msa0236690:intron 15.0%
!!! TTTTTTTTCAAATGTGATAT+AGG + chr2_2:9626159-9626178 Msa0236690:intron 15.0%
!!! TTTTTTTCAAATGTGATATA+GGG + chr2_2:9626160-9626179 Msa0236690:intron 15.0%
!!! GTTTAATCAAATTTTGCAAT+TGG + chr2_2:9621327-9621346 Msa0236690:intron 20.0%
!!! GTTCTTGAACTAATTTTTTT+TGG + chr2_2:9621385-9621404 Msa0236690:intron 20.0%
!! ACAAAAACAAACCATTAATT+TGG - chr2_2:9621699-9621718 None:intergenic 20.0%
!!! ATTTTCATTCTTTTGATATG+TGG + chr2_2:9621737-9621756 Msa0236690:intron 20.0%
!! TTAAATGTAATCATATGTGT+CGG + chr2_2:9621915-9621934 Msa0236690:intron 20.0%
!!! ATCTAAAATAAGAAGTTTGA+TGG - chr2_2:9623020-9623039 None:intergenic 20.0%
!!! ATCAAACTTCTTATTTTAGA+TGG + chr2_2:9623019-9623038 Msa0236690:intron 20.0%
!! ATTAATGAATAGAAAAGAAG+AGG - chr2_2:9623193-9623212 None:intergenic 20.0%
!! AAAATGACTTTCACATATTT+GGG - chr2_2:9623314-9623333 None:intergenic 20.0%
!! CCAAAACAAAACAAAAAAAA+AGG - chr2_2:9623825-9623844 None:intergenic 20.0%
!!! CCTTTTTTTTTGTTTTGTTT+TGG + chr2_2:9623822-9623841 Msa0236690:intron 20.0%
!! TTAGATATGATATCATAATC+CGG + chr2_2:9624356-9624375 Msa0236690:intron 20.0%
!! AAATTGGATGAAATAATTAG+TGG + chr2_2:9624652-9624671 Msa0236690:intron 20.0%
!! TGTAACTAACTATTGATATA+TGG + chr2_2:9624871-9624890 Msa0236690:intron 20.0%
!!! TTCCTTAATTTTAATCCATA+GGG - chr2_2:9625540-9625559 None:intergenic 20.0%
!!! TTTCCTTAATTTTAATCCAT+AGG - chr2_2:9625541-9625560 None:intergenic 20.0%
!! GATTAAAAAAAGAAAGAGAA+TGG + chr2_2:9625627-9625646 Msa0236690:intron 20.0%
!! CGATAATGAAAATACATAAA+TGG - chr2_2:9625679-9625698 None:intergenic 20.0%
!!! TTTTCTCAATTAAGTTTAGA+AGG + chr2_2:9625876-9625895 Msa0236690:intron 20.0%
!! TTTCTCAATTAAGTTTAGAA+GGG + chr2_2:9625877-9625896 Msa0236690:intron 20.0%
!! GAACTCTCTAATTAATATTA+TGG - chr2_2:9626078-9626097 None:intergenic 20.0%
!! TTTCAAAACCTATTAGTATA+AGG - chr2_2:9626753-9626772 None:intergenic 20.0%
!!! TTTCAGTTTTAGAATAAACA+TGG - chr2_2:9626864-9626883 None:intergenic 20.0%
! ATAGAAGAATATGAGAGAAA+AGG + chr2_2:9620872-9620891 Msa0236690:five_prime_UTR 25.0%
! TTTCAGATTCTAATTGCTTA+TGG - chr2_2:9620920-9620939 None:intergenic 25.0%
! GTTGTGTTGAATTGAAATTA+AGG - chr2_2:9621132-9621151 None:intergenic 25.0%
! TAGTTCATGAACTAAATTGA+CGG + chr2_2:9621594-9621613 Msa0236690:intron 25.0%
! ATTAAGCATTTGATTATCAC+AGG + chr2_2:9622214-9622233 Msa0236690:intron 25.0%
! AGTCAATTCAATGTCTTTAA+TGG - chr2_2:9622261-9622280 None:intergenic 25.0%
!!! TTGTTTTTCATCTTACTATG+TGG - chr2_2:9622382-9622401 None:intergenic 25.0%
! ACAAGCAGAATCAAATTAAA+GGG - chr2_2:9622432-9622451 None:intergenic 25.0%
! AACAAGCAGAATCAAATTAA+AGG - chr2_2:9622433-9622452 None:intergenic 25.0%
! ATAAGATAATTGCTCTACTA+TGG - chr2_2:9622667-9622686 None:intergenic 25.0%
! GAAAAACTGTTTGAAAACAT+TGG + chr2_2:9622750-9622769 Msa0236690:intron 25.0%
! ATAATTTGACAAACTATCTC+AGG + chr2_2:9622805-9622824 Msa0236690:intron 25.0%
! AAAGACTATATCTATGTCAT+GGG - chr2_2:9622844-9622863 None:intergenic 25.0%
! TAAAGACTATATCTATGTCA+TGG - chr2_2:9622845-9622864 None:intergenic 25.0%
! ACCTTGAAAGTTTGAAAAAA+TGG - chr2_2:9622881-9622900 None:intergenic 25.0%
!!! GTCATTTGTTTTTTTTCTTC+TGG + chr2_2:9622902-9622921 Msa0236690:intron 25.0%
! GGAAGAAACATATGTAATAT+TGG + chr2_2:9623040-9623059 Msa0236690:intron 25.0%
! AACAGAGAAATCAAAATGTT+CGG - chr2_2:9623222-9623241 None:intergenic 25.0%
! GAAAATGACTTTCACATATT+TGG - chr2_2:9623315-9623334 None:intergenic 25.0%
! TGATATTATGCAACAAACTA+TGG + chr2_2:9623390-9623409 Msa0236690:intron 25.0%
! TACAAAGCTGATAAAAAAAG+TGG - chr2_2:9623563-9623582 None:intergenic 25.0%
!! TTCTTTTGGCATTTGATAAA+TGG + chr2_2:9623596-9623615 Msa0236690:intron 25.0%
! CTCAAAATAATTCAAGAATC+AGG - chr2_2:9623622-9623641 None:intergenic 25.0%
!!! CTGATTCTTGAATTATTTTG+AGG + chr2_2:9623620-9623639 Msa0236690:intron 25.0%
! TGTATCATTTGATTCACAAT+AGG + chr2_2:9623715-9623734 Msa0236690:intron 25.0%
! CAATTCACAATTCAGAAAAT+AGG + chr2_2:9623743-9623762 Msa0236690:intron 25.0%
! TTTATATTCAAGTCGTGAAT+CGG - chr2_2:9623773-9623792 None:intergenic 25.0%
! TAGAACCTTACACTAATATT+GGG - chr2_2:9623874-9623893 None:intergenic 25.0%
! TTAGAACCTTACACTAATAT+TGG - chr2_2:9623875-9623894 None:intergenic 25.0%
! ATAAAGAAACCAACTTACTA+GGG - chr2_2:9623936-9623955 None:intergenic 25.0%
! GTCTTATCATATTAAGTGTT+TGG + chr2_2:9624028-9624047 Msa0236690:intron 25.0%
! TACATCTTATTCTTCATTCT+TGG - chr2_2:9624290-9624309 None:intergenic 25.0%
! ATAAGATGAAGAATACAGAA+TGG - chr2_2:9624387-9624406 None:intergenic 25.0%
! GACTTATTTGTAAAGAAGTT+AGG + chr2_2:9624532-9624551 Msa0236690:intron 25.0%
! ATAATTAGTGGCATGATAAT+AGG + chr2_2:9624664-9624683 Msa0236690:intron 25.0%
! TAATTAGTGGCATGATAATA+GGG + chr2_2:9624665-9624684 Msa0236690:intron 25.0%
!!! CAAAGTATTTTTACAGCTAA+GGG - chr2_2:9624913-9624932 None:intergenic 25.0%
!!! ACAAAGTATTTTTACAGCTA+AGG - chr2_2:9624914-9624933 None:intergenic 25.0%
! AAAGTAAGATTCACAAAAGT+AGG - chr2_2:9624953-9624972 None:intergenic 25.0%
! GAATCTAAGAATTTACATGT+TGG + chr2_2:9625046-9625065 Msa0236690:CDS 25.0%
! ATCCTTCATCTATAACTATT+TGG - chr2_2:9625216-9625235 None:intergenic 25.0%
! ACATAAAGAACCACAAATAA+GGG - chr2_2:9625482-9625501 None:intergenic 25.0%
! AACATAAAGAACCACAAATA+AGG - chr2_2:9625483-9625502 None:intergenic 25.0%
!!! TATTGTTTTTCACTTTGCAT+TGG - chr2_2:9625702-9625721 None:intergenic 25.0%
! AATGCAAAGTGAAAAACAAT+AGG + chr2_2:9625701-9625720 Msa0236690:intron 25.0%
! AAAGTGAAAAACAATAGGTT+AGG + chr2_2:9625706-9625725 Msa0236690:intron 25.0%
! AAGTGAAAAACAATAGGTTA+GGG + chr2_2:9625707-9625726 Msa0236690:intron 25.0%
! TCTGCTATAAACTAGAAAAT+TGG + chr2_2:9626037-9626056 Msa0236690:intron 25.0%
!! ATTAATATTATGGCTCTGTT+TGG - chr2_2:9626068-9626087 None:intergenic 25.0%
! TATTAATTAGAGAGTTCGAT+TGG + chr2_2:9626081-9626100 Msa0236690:intron 25.0%
!! TACTGAAATCTAAAACAAGA+TGG - chr2_2:9626258-9626277 None:intergenic 25.0%
! TACACGATAAAATACAATGA+AGG - chr2_2:9626442-9626461 None:intergenic 25.0%
! ATGAAGTATAAATATGGGAA+AGG - chr2_2:9626483-9626502 None:intergenic 25.0%
! CGCAAATGAAGTATAAATAT+GGG - chr2_2:9626488-9626507 None:intergenic 25.0%
! ACGCAAATGAAGTATAAATA+TGG - chr2_2:9626489-9626508 None:intergenic 25.0%
!!! ATTTCTAGACTTCAATTTTG+TGG - chr2_2:9626576-9626595 None:intergenic 25.0%
!! TTTTGCTTTCAATCTAATTC+AGG + chr2_2:9626642-9626661 Msa0236690:intron 25.0%
!!! CATGTAATCAACTTTTTTTG+TGG + chr2_2:9626776-9626795 Msa0236690:three_prime_UTR 25.0%
AGAATATGAGAGAAAAGGAA+TGG + chr2_2:9620877-9620896 Msa0236690:five_prime_UTR 30.0%
AGAGAAAACATTGTGATGAT+TGG - chr2_2:9620971-9620990 None:intergenic 30.0%
! GGGTCATGAACTTTAAAAAT+AGG + chr2_2:9621348-9621367 Msa0236690:intron 30.0%
!! TGACGGATTGAAAATAGTTT+AGG + chr2_2:9621611-9621630 Msa0236690:intron 30.0%
!! GACGGATTGAAAATAGTTTA+GGG + chr2_2:9621612-9621631 Msa0236690:intron 30.0%
TAGGTTAGAGACCAAATTAA+TGG + chr2_2:9621685-9621704 Msa0236690:intron 30.0%
!! AAGTGTTACTTCAACACATT+TGG - chr2_2:9621763-9621782 None:intergenic 30.0%
! TGAAGTAACACTTTTGATGT+TGG + chr2_2:9621770-9621789 Msa0236690:intron 30.0%
! GAAGTAACACTTTTGATGTT+GGG + chr2_2:9621771-9621790 Msa0236690:intron 30.0%
! AAGTAACACTTTTGATGTTG+GGG + chr2_2:9621772-9621791 Msa0236690:intron 30.0%
AATGAAGCACAGATACTATT+CGG - chr2_2:9621986-9622005 None:intergenic 30.0%
! AAGTTTAAAACCAATGCATG+TGG + chr2_2:9622086-9622105 Msa0236690:intron 30.0%
TCTTTAATGGAAACAACAGA+TGG - chr2_2:9622248-9622267 None:intergenic 30.0%
! ACTTCATTAGAAGAGGTTTT+GGG - chr2_2:9622290-9622309 None:intergenic 30.0%
GATGAAAAACAAATCAGAAG+AGG + chr2_2:9622390-9622409 Msa0236690:intron 30.0%
CAAGCAGAATCAAATTAAAG+GGG - chr2_2:9622431-9622450 None:intergenic 30.0%
! AAATACGACGCTTTAGATTA+AGG + chr2_2:9622489-9622508 Msa0236690:intron 30.0%
TGACACTAATATCTAGATAC+TGG - chr2_2:9622609-9622628 None:intergenic 30.0%
TTGCTTTCAAGATGTTGTAA+TGG + chr2_2:9622698-9622717 Msa0236690:intron 30.0%
ACTGTGAATACCTAAATGTA+AGG + chr2_2:9622773-9622792 Msa0236690:intron 30.0%
!!! GCCATTTTTTCAAACTTTCA+AGG + chr2_2:9622877-9622896 Msa0236690:intron 30.0%
TTTAGCTACAACATGGTAAT+TGG - chr2_2:9622939-9622958 None:intergenic 30.0%
GAGTTTATACTTCTATCTGT+AGG + chr2_2:9623062-9623081 Msa0236690:intron 30.0%
TGAATAGAAAAGAAGAGGAT+TGG - chr2_2:9623188-9623207 None:intergenic 30.0%
ACAGAGAAATCAAAATGTTC+GGG - chr2_2:9623221-9623240 None:intergenic 30.0%
ATAGATACACGCTAACATTT+GGG - chr2_2:9623471-9623490 None:intergenic 30.0%
AATAGATACACGCTAACATT+TGG - chr2_2:9623472-9623491 None:intergenic 30.0%
GTGATTCGTTACAATGAATT+AGG - chr2_2:9623518-9623537 None:intergenic 30.0%
!! ATAACCAACCACTTTTCTTT+TGG + chr2_2:9623582-9623601 Msa0236690:intron 30.0%
ATCAAATGCCAAAAGAAAAG+TGG - chr2_2:9623593-9623612 None:intergenic 30.0%
ACACTAATATTGGGAATCAA+AGG - chr2_2:9623865-9623884 None:intergenic 30.0%
TGATTCCCAATATTAGTGTA+AGG + chr2_2:9623866-9623885 Msa0236690:intron 30.0%
CATAAAGAAACCAACTTACT+AGG - chr2_2:9623937-9623956 None:intergenic 30.0%
!! CTAGTAAGTTGGTTTCTTTA+TGG + chr2_2:9623935-9623954 Msa0236690:intron 30.0%
!!! ACAGACAGTTTTTTCTTACT+GGG - chr2_2:9624010-9624029 None:intergenic 30.0%
! TCTAAGACCTCAGATAATTT+AGG + chr2_2:9624085-9624104 Msa0236690:intron 30.0%
TTCTCCTCGTCATATTAAAA+GGG - chr2_2:9624210-9624229 None:intergenic 30.0%
TCTTATTCTTCATTCTTGGA+CGG - chr2_2:9624286-9624305 None:intergenic 30.0%
TGAAGAATAAGATGTAACAC+CGG + chr2_2:9624294-9624313 Msa0236690:intron 30.0%
ATCAGCTAATATGGAATATC+CGG - chr2_2:9624316-9624335 None:intergenic 30.0%
TTGTAATACATGTTGTCAGT+TGG - chr2_2:9624507-9624526 None:intergenic 30.0%
!! ATGGTCAACAATTCTGAAAT+TGG + chr2_2:9624636-9624655 Msa0236690:intron 30.0%
ATGACATTTGATCTATTTGC+AGG + chr2_2:9624982-9625001 Msa0236690:intron 30.0%
GAAATAAAGCCTGTTGTTAT+TGG + chr2_2:9625022-9625041 Msa0236690:CDS 30.0%
TTAGATTCACCAATAACAAC+AGG - chr2_2:9625034-9625053 None:intergenic 30.0%
! AGAGTATTCTCATATCCATA+AGG - chr2_2:9625097-9625116 None:intergenic 30.0%
!! TTGTTAAGTTGAATCCAACA+TGG + chr2_2:9625137-9625156 Msa0236690:intron 30.0%
CTAATGAAAGTTTACCATGT+TGG - chr2_2:9625154-9625173 None:intergenic 30.0%
TGCCAAATAGTTATAGATGA+AGG + chr2_2:9625211-9625230 Msa0236690:intron 30.0%
TCAGATAAAACAAAATCGCT+TGG + chr2_2:9625303-9625322 Msa0236690:intron 30.0%
TTATGCGATGTAAATTATGC+AGG + chr2_2:9625359-9625378 Msa0236690:intron 30.0%
! TGCCCTATGGATTAAAATTA+AGG + chr2_2:9625535-9625554 Msa0236690:intron 30.0%
AGTGAAAAACAATAGGTTAG+GGG + chr2_2:9625708-9625727 Msa0236690:intron 30.0%
!! GAAAGCGTTGTTAAAATTAG+TGG + chr2_2:9625797-9625816 Msa0236690:intron 30.0%
ATAAGCTCATATGACCAAAA+AGG - chr2_2:9626011-9626030 None:intergenic 30.0%
ATGTGATATAGGGAGTAATT+TGG + chr2_2:9626170-9626189 Msa0236690:intron 30.0%
AAACTGTACAATGTAACCAA+CGG + chr2_2:9626195-9626214 Msa0236690:intron 30.0%
TATATTACCTTTCCTTGTGA+AGG - chr2_2:9626414-9626433 None:intergenic 30.0%
TGAAAGCAAAACATTCTTGA+AGG - chr2_2:9626633-9626652 None:intergenic 30.0%
TTTCAATCTAATTCAGGTAC+CGG + chr2_2:9626648-9626667 Msa0236690:intron 30.0%
AGGTGTTCCATATACAATAA+GGG - chr2_2:9626733-9626752 None:intergenic 30.0%
! AAGGTGTTCCATATACAATA+AGG - chr2_2:9626734-9626753 None:intergenic 30.0%
ATGGAACACCTTATACTAAT+AGG + chr2_2:9626742-9626761 Msa0236690:CDS 30.0%
!! CTGAAAGAGAAAGTGTTGTA+TGG + chr2_2:9620934-9620953 Msa0236690:exon 35.0%
AAGACTTGAACTGAAGACTA+TGG - chr2_2:9621086-9621105 None:intergenic 35.0%
AGTTGTTGTGAAAGTGAAAG+TGG - chr2_2:9621154-9621173 None:intergenic 35.0%
AAACCTGAAACAAATGCACA+AGG - chr2_2:9621207-9621226 None:intergenic 35.0%
ATTGGTACCCAAAATTAGCT+GGG - chr2_2:9621415-9621434 None:intergenic 35.0%
TGTTTGTTCTCGCTTCAATT+AGG - chr2_2:9621456-9621475 None:intergenic 35.0%
TGACCCAATACAAGAATTGT+TGG + chr2_2:9621488-9621507 Msa0236690:intron 35.0%
AGTTCATGAACTAAACCCTA+GGG - chr2_2:9621587-9621606 None:intergenic 35.0%
TAGTTCATGAACTAAACCCT+AGG - chr2_2:9621588-9621607 None:intergenic 35.0%
CTAAAGTTCATGGACCAAAT+TGG + chr2_2:9621651-9621670 Msa0236690:intron 35.0%
CTATCATTGTCTCTCCAATT+TGG - chr2_2:9621668-9621687 None:intergenic 35.0%
CAAATTGGAGAGACAATGAT+AGG + chr2_2:9621666-9621685 Msa0236690:intron 35.0%
! AGTAACACTTTTGATGTTGG+GGG + chr2_2:9621773-9621792 Msa0236690:intron 35.0%
ATAGGTCACAACTACAATTG+TGG - chr2_2:9621826-9621845 None:intergenic 35.0%
TAGTTGTGACCTATGAAACA+CGG + chr2_2:9621832-9621851 Msa0236690:intron 35.0%
AATGTAATCATATGTGTCGG+TGG + chr2_2:9621918-9621937 Msa0236690:intron 35.0%
! CACTTTAAAGGACTTTGCAA+CGG - chr2_2:9622019-9622038 None:intergenic 35.0%
AATCACCATTTCGTATGTGT+TGG - chr2_2:9622176-9622195 None:intergenic 35.0%
! CTTCATTAGAAGAGGTTTTG+GGG - chr2_2:9622289-9622308 None:intergenic 35.0%
! GACTTCATTAGAAGAGGTTT+TGG - chr2_2:9622291-9622310 None:intergenic 35.0%
TAGCATGACTTCATTAGAAG+AGG - chr2_2:9622297-9622316 None:intergenic 35.0%
TAATGAAGTCATGCTAGATG+AGG + chr2_2:9622301-9622320 Msa0236690:CDS 35.0%
! GGCTTCATTTGGGATAAATT+TGG + chr2_2:9622356-9622375 Msa0236690:CDS 35.0%
GTGCTTTCAATTCAATGAAG+TGG + chr2_2:9622720-9622739 Msa0236690:intron 35.0%
!!! TTTTTTTTCTTCTGGTGCAC+AGG + chr2_2:9622910-9622929 Msa0236690:intron 35.0%
! TAGCTAGTTTAGCTACAACA+TGG - chr2_2:9622946-9622965 None:intergenic 35.0%
ACGTTGTAAACCACTAGTAT+CGG - chr2_2:9622969-9622988 None:intergenic 35.0%
TAGTGGTTTACAACGTTGTA+AGG + chr2_2:9622973-9622992 Msa0236690:CDS 35.0%
TGATGGAATTATCAGCACAA+GGG - chr2_2:9623003-9623022 None:intergenic 35.0%
TTGATGGAATTATCAGCACA+AGG - chr2_2:9623004-9623023 None:intergenic 35.0%
!! TTTTCCTAGTTGATGCCAAT+GGG + chr2_2:9623085-9623104 Msa0236690:CDS 35.0%
! CAATGGGAATAACTTTTCCA+GGG + chr2_2:9623101-9623120 Msa0236690:CDS 35.0%
AGAACAGCTAGATCATATGA+TGG - chr2_2:9623150-9623169 None:intergenic 35.0%
ATATGATCTAGCTGTTCTGA+AGG + chr2_2:9623152-9623171 Msa0236690:CDS 35.0%
GATTTCTCTGTTATTCCTGT+TGG + chr2_2:9623230-9623249 Msa0236690:intron 35.0%
AGCATATAGAAGAATCCAAC+AGG - chr2_2:9623248-9623267 None:intergenic 35.0%
!! TATGGTAATGGATTGGAAAG+TGG - chr2_2:9623286-9623305 None:intergenic 35.0%
ATTTGGGCATGTTATGGTAA+TGG - chr2_2:9623298-9623317 None:intergenic 35.0%
TCACATATTTGGGCATGTTA+TGG - chr2_2:9623304-9623323 None:intergenic 35.0%
AAGCTGATAAAAAAAGTGGC+CGG - chr2_2:9623559-9623578 None:intergenic 35.0%
AATGCCAAAAGAAAAGTGGT+TGG - chr2_2:9623589-9623608 None:intergenic 35.0%
! GGAACTAAACATTTGTTGCA+AGG - chr2_2:9623804-9623823 None:intergenic 35.0%
TCTTTATGGCACAAAAATGC+AGG + chr2_2:9623949-9623968 Msa0236690:intron 35.0%
AAATGCAGGCATTTGCTTTA+TGG + chr2_2:9623963-9623982 Msa0236690:intron 35.0%
! TTTTCTTACTGGGACAGAAT+AGG - chr2_2:9624000-9624019 None:intergenic 35.0%
!!! GACAGACAGTTTTTTCTTAC+TGG - chr2_2:9624011-9624030 None:intergenic 35.0%
TTGTGTAGTATTAAGGCAGA+TGG - chr2_2:9624054-9624073 None:intergenic 35.0%
ATCTGCCTTAATACTACACA+AGG + chr2_2:9624053-9624072 Msa0236690:intron 35.0%
TTGGTCCTTGTGTAGTATTA+AGG - chr2_2:9624061-9624080 None:intergenic 35.0%
! ATCTGAGGTCTTAGAATACT+TGG - chr2_2:9624080-9624099 None:intergenic 35.0%
AAGACCTCAGATAATTTAGG+AGG + chr2_2:9624088-9624107 Msa0236690:intron 35.0%
GTTTCCTCCTAAATTATCTG+AGG - chr2_2:9624095-9624114 None:intergenic 35.0%
!! GTTTAGAGTTCCTCTTTTCA+AGG + chr2_2:9624165-9624184 Msa0236690:intron 35.0%
CTTCTCCTCGTCATATTAAA+AGG - chr2_2:9624211-9624230 None:intergenic 35.0%
TTTAATATGACGAGGAGAAG+AGG + chr2_2:9624211-9624230 Msa0236690:intron 35.0%
TTAATATGACGAGGAGAAGA+GGG + chr2_2:9624212-9624231 Msa0236690:intron 35.0%
TACAGTTGCATCAGCTAATA+TGG - chr2_2:9624325-9624344 None:intergenic 35.0%
ACCATTACTTACAATACTCC+TGG + chr2_2:9624428-9624447 Msa0236690:intron 35.0%
!! ACCAGGAGTATTGTAAGTAA+TGG - chr2_2:9624432-9624451 None:intergenic 35.0%
AATACATGTTGTCAGTTGGA+AGG - chr2_2:9624503-9624522 None:intergenic 35.0%
AGCAAGTTCACAACATTGAA+AGG - chr2_2:9624576-9624595 None:intergenic 35.0%
CCATTTATGCTTACTGTGAA+AGG - chr2_2:9624600-9624619 None:intergenic 35.0%
CCTTTCACAGTAAGCATAAA+TGG + chr2_2:9624597-9624616 Msa0236690:intron 35.0%
TCACAGTAAGCATAAATGGA+AGG + chr2_2:9624601-9624620 Msa0236690:intron 35.0%
CACAGTAAGCATAAATGGAA+GGG + chr2_2:9624602-9624621 Msa0236690:intron 35.0%
AGTTAGTTAGACAGGTTAGA+AGG - chr2_2:9624775-9624794 None:intergenic 35.0%
! GGTTAGTTAGTTAGTTAGAC+AGG - chr2_2:9624783-9624802 None:intergenic 35.0%
GTAAGATTCACAAAAGTAGG+CGG - chr2_2:9624950-9624969 None:intergenic 35.0%
!! TATTTGCAGGTTGATGTTGA+TGG + chr2_2:9624995-9625014 Msa0236690:intron 35.0%
ATATCCATAAGGATTCCCAA+TGG - chr2_2:9625086-9625105 None:intergenic 35.0%
TATGAGAATACTCTCACAAC+AGG + chr2_2:9625103-9625122 Msa0236690:CDS 35.0%
ATGAGAATACTCTCACAACA+GGG + chr2_2:9625104-9625123 Msa0236690:CDS 35.0%
AGATGAAGGATGAAAATCTG+TGG + chr2_2:9625225-9625244 Msa0236690:intron 35.0%
! GTAAGCTATACCCTTATTTG+TGG + chr2_2:9625469-9625488 Msa0236690:intron 35.0%
TCAAATGCGACGATTATTGT+GGG - chr2_2:9625581-9625600 None:intergenic 35.0%
! CTTTGTTTGGTAAAAGGTAG+CGG + chr2_2:9625744-9625763 Msa0236690:intron 35.0%
! GTTACCAAACAAGTCCTTTT+TGG + chr2_2:9625994-9626013 Msa0236690:intron 35.0%
! ATGACCAAAAAGGACTTGTT+TGG - chr2_2:9626001-9626020 None:intergenic 35.0%
!! AGAATTCTAAGAAGCATTGG+GGG - chr2_2:9626235-9626254 None:intergenic 35.0%
!! GAGAATTCTAAGAAGCATTG+GGG - chr2_2:9626236-9626255 None:intergenic 35.0%
!! GGAGAATTCTAAGAAGCATT+GGG - chr2_2:9626237-9626256 None:intergenic 35.0%
! TGGAGAATTCTAAGAAGCAT+TGG - chr2_2:9626238-9626257 None:intergenic 35.0%
CTATGATCAGAAGTAAAGGA+TGG - chr2_2:9626285-9626304 None:intergenic 35.0%
CATCCTTTACTTCTGATCAT+AGG + chr2_2:9626283-9626302 Msa0236690:intron 35.0%
AGTCCTATGATCAGAAGTAA+AGG - chr2_2:9626289-9626308 None:intergenic 35.0%
ATGTTAACAGGAAATTCAGG+CGG + chr2_2:9626341-9626360 Msa0236690:intron 35.0%
CTTCTAATTACAGAGTCGAT+GGG - chr2_2:9626702-9626721 None:intergenic 35.0%
ACTTCTAATTACAGAGTCGA+TGG - chr2_2:9626703-9626722 None:intergenic 35.0%
GTACCATCCCTTATTGTATA+TGG + chr2_2:9626723-9626742 Msa0236690:CDS 35.0%
GTTCCATATACAATAAGGGA+TGG - chr2_2:9626729-9626748 None:intergenic 35.0%
! CAAGTCTTGTAGTTGCTTCT+TGG + chr2_2:9621098-9621117 Msa0236690:CDS 40.0%
! TTGGGAAACCCAGCTAATTT+TGG + chr2_2:9621404-9621423 Msa0236690:intron 40.0%
! TGGGAAACCCAGCTAATTTT+GGG + chr2_2:9621405-9621424 Msa0236690:intron 40.0%
GATTGGTACCCAAAATTAGC+TGG - chr2_2:9621416-9621435 None:intergenic 40.0%
TCAATTAGGCCTCTAGTTGA+TGG - chr2_2:9621442-9621461 None:intergenic 40.0%
GCGCCAACAATTCTTGTATT+GGG - chr2_2:9621494-9621513 None:intergenic 40.0%
TGCGCCAACAATTCTTGTAT+TGG - chr2_2:9621495-9621514 None:intergenic 40.0%
ATACAAGAATTGTTGGCGCA+TGG + chr2_2:9621495-9621514 Msa0236690:intron 40.0%
TACAAGAATTGTTGGCGCAT+GGG + chr2_2:9621496-9621515 Msa0236690:intron 40.0%
TGTCGAACATGTGTCAATGT+CGG - chr2_2:9621947-9621966 None:intergenic 40.0%
ATTGACACATGTTCGACAGT+GGG + chr2_2:9621949-9621968 Msa0236690:intron 40.0%
GCACAGATACTATTCGGATT+AGG - chr2_2:9621980-9621999 None:intergenic 40.0%
CAATTGTGGTCGCACTTTAA+AGG - chr2_2:9622031-9622050 None:intergenic 40.0%
TTGTCAATCTCCACATGCAT+TGG - chr2_2:9622099-9622118 None:intergenic 40.0%
GTTCTCCAACACATACGAAA+TGG + chr2_2:9622168-9622187 Msa0236690:intron 40.0%
TGAGGATGAAGATGCAAAAG+TGG + chr2_2:9622319-9622338 Msa0236690:CDS 40.0%
GATGAAGATGCAAAAGTGGA+AGG + chr2_2:9622323-9622342 Msa0236690:CDS 40.0%
! ACGACGCTTTAGATTAAGGT+TGG + chr2_2:9622493-9622512 Msa0236690:intron 40.0%
! GCTTTAGATTAAGGTTGGTC+CGG + chr2_2:9622498-9622517 Msa0236690:intron 40.0%
CAACGATATGTTTCGAACAC+CGG - chr2_2:9622520-9622539 None:intergenic 40.0%
TTGAGTGTAACCACATGTGT+CGG - chr2_2:9622561-9622580 None:intergenic 40.0%
TGCATACGTGCCTTACATTT+AGG - chr2_2:9622786-9622805 None:intergenic 40.0%
AAACTAGCTACCGATACTAG+TGG + chr2_2:9622956-9622975 Msa0236690:CDS 40.0%
!! GTTTTCCTAGTTGATGCCAA+TGG + chr2_2:9623084-9623103 Msa0236690:CDS 40.0%
TATTCCCATTGGCATCAACT+AGG - chr2_2:9623092-9623111 None:intergenic 40.0%
CCTGGAAAAGTTATTCCCAT+TGG - chr2_2:9623103-9623122 None:intergenic 40.0%
! CCAATGGGAATAACTTTTCC+AGG + chr2_2:9623100-9623119 Msa0236690:CDS 40.0%
! GGAATAACTTTTCCAGGGAA+GGG + chr2_2:9623106-9623125 Msa0236690:CDS 40.0%
TCCAGGGAAGGGAAAATAAT+TGG + chr2_2:9623117-9623136 Msa0236690:CDS 40.0%
CCAGGGAAGGGAAAATAATT+GGG + chr2_2:9623118-9623137 Msa0236690:CDS 40.0%
!! GGCATGTTATGGTAATGGAT+TGG - chr2_2:9623293-9623312 None:intergenic 40.0%
CTATCTACACTTAGTGTAGC+CGG + chr2_2:9623537-9623556 Msa0236690:intron 40.0%
ATCGAAAGACCCTAGTAAGT+TGG + chr2_2:9623924-9623943 Msa0236690:intron 40.0%
GATAATTTAGGAGGAAACCC+TGG + chr2_2:9624097-9624116 Msa0236690:intron 40.0%
TAATATGACGAGGAGAAGAG+GGG + chr2_2:9624213-9624232 Msa0236690:intron 40.0%
TAGCTGATGCAACTGTACTA+TGG + chr2_2:9624328-9624347 Msa0236690:intron 40.0%
AGAATACAGAATGGCAGATC+CGG - chr2_2:9624378-9624397 None:intergenic 40.0%
! TGGAAGGGAACACATTTTCA+TGG + chr2_2:9624617-9624636 Msa0236690:intron 40.0%
TTAGACAGGTTAGAAGGACA+GGG - chr2_2:9624769-9624788 None:intergenic 40.0%
TTTGCCATTGGGAATCCTTA+TGG + chr2_2:9625079-9625098 Msa0236690:CDS 40.0%
TGAGAATACTCTCACAACAG+GGG + chr2_2:9625105-9625124 Msa0236690:CDS 40.0%
AGAGTTCTTAGCAGATTCAG+AGG - chr2_2:9625181-9625200 None:intergenic 40.0%
TGCGATGTAAATTATGCAGG+TGG + chr2_2:9625362-9625381 Msa0236690:intron 40.0%
TAAATTATGCAGGTGGTCAG+TGG + chr2_2:9625369-9625388 Msa0236690:intron 40.0%
ACTGATGCAGCTATTAATGC+AGG + chr2_2:9625447-9625466 Msa0236690:CDS 40.0%
CCAACAAATGCTTGGTATTG+AGG - chr2_2:9625510-9625529 None:intergenic 40.0%
CCTCAATACCAAGCATTTGT+TGG + chr2_2:9625507-9625526 Msa0236690:intron 40.0%
GACGATTATTGTGGGTCAAA+GGG - chr2_2:9625573-9625592 None:intergenic 40.0%
GTCAAATGCGACGATTATTG+TGG - chr2_2:9625582-9625601 None:intergenic 40.0%
!! CGCAAGCTTTGTTTGGTAAA+AGG + chr2_2:9625738-9625757 Msa0236690:intron 40.0%
!! AAGGTAGCGGATAGTTAACA+AGG + chr2_2:9625757-9625776 Msa0236690:intron 40.0%
CGGATGTTAACAGGAAATTC+AGG + chr2_2:9626338-9626357 Msa0236690:intron 40.0%
CTGTGTTTACTCCAACAACA+TGG - chr2_2:9626388-9626407 None:intergenic 40.0%
ATTACCTTTCCTTGTGAAGG+TGG - chr2_2:9626411-9626430 None:intergenic 40.0%
! TGAGTAGTTAGCGTTGGAGA+GGG - chr2_2:9621010-9621029 None:intergenic 45.0%
! ATGAGTAGTTAGCGTTGGAG+AGG - chr2_2:9621011-9621030 None:intergenic 45.0%
GAGGAATGAGTAGTTAGCGT+TGG - chr2_2:9621016-9621035 None:intergenic 45.0%
CTTAGTAGCTGTAACAGTGG+TGG - chr2_2:9621056-9621075 None:intergenic 45.0%
TCGCTTAGTAGCTGTAACAG+TGG - chr2_2:9621059-9621078 None:intergenic 45.0%
CCTGAAACAAATGCACAAGG+TGG - chr2_2:9621204-9621223 None:intergenic 45.0%
CCACCTTGTGCATTTGTTTC+AGG + chr2_2:9621201-9621220 Msa0236690:CDS 45.0%
!! CCTCTAGTTGATGGTGAGAT+TGG - chr2_2:9621433-9621452 None:intergenic 45.0%
CCAATCTCACCATCAACTAG+AGG + chr2_2:9621430-9621449 Msa0236690:intron 45.0%
! TGCGCTCTTTTCTAGGTCTT+AGG - chr2_2:9621531-9621550 None:intergenic 45.0%
CATGAACTAAACCCTAGGGT+TGG - chr2_2:9621583-9621602 None:intergenic 45.0%
TGTCTGTGACCGTGTTTCAT+AGG - chr2_2:9621844-9621863 None:intergenic 45.0%
ATGAAACACGGTCACAGACA+TGG + chr2_2:9621844-9621863 Msa0236690:intron 45.0%
GTCACAGACATGGAAAGACA+CGG + chr2_2:9621854-9621873 Msa0236690:intron 45.0%
CATTGACACATGTTCGACAG+TGG + chr2_2:9621948-9621967 Msa0236690:intron 45.0%
!! CACTGGTTCAGGCTTCATTT+GGG + chr2_2:9622346-9622365 Msa0236690:CDS 45.0%
!! GTCGGTGTTGTGTTAATGTC+TGG - chr2_2:9622543-9622562 None:intergenic 45.0%
TAACACAACACCGACACATG+TGG + chr2_2:9622548-9622567 Msa0236690:intron 45.0%
! GGGAATAACTTTTCCAGGGA+AGG + chr2_2:9623105-9623124 Msa0236690:CDS 45.0%
! CCCAATTATTTTCCCTTCCC+TGG - chr2_2:9623121-9623140 None:intergenic 45.0%
CTTACTGGGACAGAATAGGA+GGG - chr2_2:9623996-9624015 None:intergenic 45.0%
TCTTACTGGGACAGAATAGG+AGG - chr2_2:9623997-9624016 None:intergenic 45.0%
GACACGACCAAATGAGCTAA+CGG + chr2_2:9624139-9624158 Msa0236690:intron 45.0%
ACACGACCAAATGAGCTAAC+GGG + chr2_2:9624140-9624159 Msa0236690:intron 45.0%
ATATTAAAAGGGCCCAGGTG+TGG - chr2_2:9624199-9624218 None:intergenic 45.0%
TCGTCATATTAAAAGGGCCC+AGG - chr2_2:9624204-9624223 None:intergenic 45.0%
! TGGGCCCTTTTAATATGACG+AGG + chr2_2:9624203-9624222 Msa0236690:intron 45.0%
ATTCTTGGACGGAGCAAATG+AGG - chr2_2:9624275-9624294 None:intergenic 45.0%
CTGATGCAACTGTACTATGG+TGG + chr2_2:9624331-9624350 Msa0236690:intron 45.0%
! AGCTTCTAGAAGAGTAGACC+AGG - chr2_2:9624449-9624468 None:intergenic 45.0%
! TGGTCTACTCTTCTAGAAGC+TGG + chr2_2:9624448-9624467 Msa0236690:intron 45.0%
GTTAGACAGGTTAGAAGGAC+AGG - chr2_2:9624770-9624789 None:intergenic 45.0%
! GACAGAGTTGCTTTGCCATT+GGG + chr2_2:9625068-9625087 Msa0236690:CDS 45.0%
AGATACCTTCCCCAAATGGA+GGG + chr2_2:9625403-9625422 Msa0236690:CDS 45.0%
! TTTGATAGCCCCTCCATTTG+GGG - chr2_2:9625415-9625434 None:intergenic 45.0%
! CTTTGATAGCCCCTCCATTT+GGG - chr2_2:9625416-9625435 None:intergenic 45.0%
GCAACAAGCCAACAAATGCT+TGG - chr2_2:9625518-9625537 None:intergenic 45.0%
!! TTTGTTGGCTTGTTGCCCTA+TGG + chr2_2:9625522-9625541 Msa0236690:intron 45.0%
CGACGATTATTGTGGGTCAA+AGG - chr2_2:9625574-9625593 None:intergenic 45.0%
GGCAAAAGTAAAGTGACCGT+TGG - chr2_2:9626214-9626233 None:intergenic 45.0%
TATGATCTTGTGTTCGCGCA+CGG + chr2_2:9626318-9626337 Msa0236690:intron 45.0%
! GGACCATTGATTGACTCTCA+TGG + chr2_2:9626362-9626381 Msa0236690:CDS 45.0%
TGGCCATGAGAGTCAATCAA+TGG - chr2_2:9626368-9626387 None:intergenic 45.0%
TAAACACAGCCACCTTCACA+AGG + chr2_2:9626399-9626418 Msa0236690:CDS 45.0%
GTTAACTCCTGATGAAGCTC+CGG - chr2_2:9626670-9626689 None:intergenic 45.0%
GAGAGGGAAAGAGGTTCGTT+TGG - chr2_2:9620994-9621013 None:intergenic 50.0%
! TTAGCGTTGGAGAGGGAAAG+AGG - chr2_2:9621003-9621022 None:intergenic 50.0%
!! TGTAACAGTGGTGGTGGGAA+GGG - chr2_2:9621047-9621066 None:intergenic 50.0%
GTAGCTGTAACAGTGGTGGT+GGG - chr2_2:9621052-9621071 None:intergenic 50.0%
AGTAGCTGTAACAGTGGTGG+TGG - chr2_2:9621053-9621072 None:intergenic 50.0%
!! CAAGGAGTGCGCTCTTTTCT+AGG - chr2_2:9621538-9621557 None:intergenic 50.0%
! CTAGAAAAGAGCGCACTCCT+TGG + chr2_2:9621536-9621555 Msa0236690:intron 50.0%
GGGGCAAATGCAAGCAAATG+CGG + chr2_2:9621792-9621811 Msa0236690:intron 50.0%
CAACTACAATTGTGGCCGAC+TGG - chr2_2:9621818-9621837 None:intergenic 50.0%
GTCGCTTGCAACTGCAATTG+TGG - chr2_2:9622045-9622064 None:intergenic 50.0%
! GATGCAAAAGTGGAAGGCAC+TGG + chr2_2:9622329-9622348 Msa0236690:CDS 50.0%
!! AAAGTGGAAGGCACTGGTTC+AGG + chr2_2:9622335-9622354 Msa0236690:CDS 50.0%
!! GCACTGGTTCAGGCTTCATT+TGG + chr2_2:9622345-9622364 Msa0236690:CDS 50.0%
!! TGGAGCACTGACACGTATAC+AGG - chr2_2:9622647-9622666 None:intergenic 50.0%
CACGACCAAATGAGCTAACG+GGG + chr2_2:9624141-9624160 Msa0236690:intron 50.0%
ACGACCAAATGAGCTAACGG+GGG + chr2_2:9624142-9624161 Msa0236690:intron 50.0%
AAACCCCCCGTTAGCTCATT+TGG - chr2_2:9624149-9624168 None:intergenic 50.0%
GGACGAGTCTCCTTGAAAAG+AGG - chr2_2:9624178-9624197 None:intergenic 50.0%
AGTGACATGGAAGCCACATG+TGG - chr2_2:9624242-9624261 None:intergenic 50.0%
AGGTGTAGCGTCAAGTGACA+TGG - chr2_2:9624255-9624274 None:intergenic 50.0%
ACAGGTTAGAAGGACAGGGA+TGG - chr2_2:9624765-9624784 None:intergenic 50.0%
! GGACAGAGTTGCTTTGCCAT+TGG + chr2_2:9625067-9625086 Msa0236690:CDS 50.0%
ATGCAGGTGGTCAGTGGTTT+AGG + chr2_2:9625375-9625394 Msa0236690:intron 50.0%
!! CATTTGGGGAAGGTATCTCG+CGG - chr2_2:9625401-9625420 None:intergenic 50.0%
GAGATACCTTCCCCAAATGG+AGG + chr2_2:9625402-9625421 Msa0236690:CDS 50.0%
GATACCTTCCCCAAATGGAG+GGG + chr2_2:9625404-9625423 Msa0236690:CDS 50.0%
! CCTTTGATAGCCCCTCCATT+TGG - chr2_2:9625417-9625436 None:intergenic 50.0%
CCAAATGGAGGGGCTATCAA+AGG + chr2_2:9625414-9625433 Msa0236690:CDS 50.0%
!! CGATGCACGCAAGCTTTGTT+TGG + chr2_2:9625731-9625750 Msa0236690:intron 50.0%
GACTCTCATGGCCATGTTGT+TGG + chr2_2:9626374-9626393 Msa0236690:CDS 50.0%
ACAGCCACCTTCACAAGGAA+AGG + chr2_2:9626404-9626423 Msa0236690:CDS 50.0%
GGTGGGAAGGGTCTTTGTTG+AGG - chr2_2:9621035-9621054 None:intergenic 55.0%
!! CTGTAACAGTGGTGGTGGGA+AGG - chr2_2:9621048-9621067 None:intergenic 55.0%
!! ACTAAACCCTAGGGTTGGCC+TGG - chr2_2:9621578-9621597 None:intergenic 55.0%
TGCAAGCAAATGCGGCCAGT+CGG + chr2_2:9621800-9621819 Msa0236690:intron 55.0%
GTGGTGACAGCTCACAACCA+GGG - chr2_2:9624117-9624136 None:intergenic 55.0%
GCTCATTTGGTCGTGTCACG+TGG - chr2_2:9624136-9624155 None:intergenic 55.0%
CGACCAAATGAGCTAACGGG+GGG + chr2_2:9624143-9624162 Msa0236690:intron 55.0%
AAGGAGACTCGTCCACACCT+GGG + chr2_2:9624184-9624203 Msa0236690:intron 55.0%
GACATGGAAGCCACATGTGG+CGG - chr2_2:9624239-9624258 None:intergenic 55.0%
CGCGAGATACCTTCCCCAAA+TGG + chr2_2:9625399-9625418 Msa0236690:CDS 55.0%
ATAGCCCCTCCATTTGGGGA+AGG - chr2_2:9625411-9625430 None:intergenic 55.0%
GTTCGCGCACGGATGTTAAC+AGG + chr2_2:9626329-9626348 Msa0236690:intron 55.0%
!! TCAGGTACCGGAGCTTCATC+AGG + chr2_2:9626660-9626679 Msa0236690:intron 55.0%
GTGGTGAAGGCTTGGGACCA+AGG - chr2_2:9621556-9621575 None:intergenic 60.0%
! TGGCCTGGTGGTGAAGGCTT+GGG - chr2_2:9621563-9621582 None:intergenic 60.0%
! TTGGCCTGGTGGTGAAGGCT+TGG - chr2_2:9621564-9621583 None:intergenic 60.0%
!! TAGGGTTGGCCTGGTGGTGA+AGG - chr2_2:9621569-9621588 None:intergenic 60.0%
TTCACCACCAGGCCAACCCT+AGG + chr2_2:9621568-9621587 Msa0236690:intron 60.0%
TCACCACCAGGCCAACCCTA+GGG + chr2_2:9621569-9621588 Msa0236690:intron 60.0%
!! AAACCCTAGGGTTGGCCTGG+TGG - chr2_2:9621575-9621594 None:intergenic 60.0%
CGTGGTGACAGCTCACAACC+AGG - chr2_2:9624118-9624137 None:intergenic 60.0%
CAAGGAGACTCGTCCACACC+TGG + chr2_2:9624183-9624202 Msa0236690:intron 60.0%
GGTCCCAAGCCTTCACCACC+AGG + chr2_2:9621557-9621576 Msa0236690:intron 65.0%
AGAAGAGGGGCCGCCACATG+TGG + chr2_2:9624226-9624245 Msa0236690:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 9620865 9626895 9620865 ID=Msa0236690;Name=Msa0236690
chr2_2 mRNA 9620865 9626895 9620865 ID=Msa0236690-mRNA-1;Parent=Msa0236690;Name=Msa0236690-mRNA-1;_AED=0.27;_eAED=0.27;_QI=88|1|1|1|1|1|8|125|321
chr2_2 exon 9620865 9621222 9620865 ID=Msa0236690-mRNA-1:exon:4198;Parent=Msa0236690-mRNA-1
chr2_2 exon 9622236 9622385 9622236 ID=Msa0236690-mRNA-1:exon:4199;Parent=Msa0236690-mRNA-1
chr2_2 exon 9622932 9622994 9622932 ID=Msa0236690-mRNA-1:exon:4200;Parent=Msa0236690-mRNA-1
chr2_2 exon 9623084 9623173 9623084 ID=Msa0236690-mRNA-1:exon:4201;Parent=Msa0236690-mRNA-1
chr2_2 exon 9625004 9625126 9625004 ID=Msa0236690-mRNA-1:exon:4202;Parent=Msa0236690-mRNA-1
chr2_2 exon 9625381 9625468 9625381 ID=Msa0236690-mRNA-1:exon:4203;Parent=Msa0236690-mRNA-1
chr2_2 exon 9626351 9626425 9626351 ID=Msa0236690-mRNA-1:exon:4204;Parent=Msa0236690-mRNA-1
chr2_2 exon 9626664 9626895 9626664 ID=Msa0236690-mRNA-1:exon:4205;Parent=Msa0236690-mRNA-1
chr2_2 five_prime_UTR 9620865 9620952 9620865 ID=Msa0236690-mRNA-1:five_prime_utr;Parent=Msa0236690-mRNA-1
chr2_2 CDS 9620953 9621222 9620953 ID=Msa0236690-mRNA-1:cds;Parent=Msa0236690-mRNA-1
chr2_2 CDS 9622236 9622385 9622236 ID=Msa0236690-mRNA-1:cds;Parent=Msa0236690-mRNA-1
chr2_2 CDS 9622932 9622994 9622932 ID=Msa0236690-mRNA-1:cds;Parent=Msa0236690-mRNA-1
chr2_2 CDS 9623084 9623173 9623084 ID=Msa0236690-mRNA-1:cds;Parent=Msa0236690-mRNA-1
chr2_2 CDS 9625004 9625126 9625004 ID=Msa0236690-mRNA-1:cds;Parent=Msa0236690-mRNA-1
chr2_2 CDS 9625381 9625468 9625381 ID=Msa0236690-mRNA-1:cds;Parent=Msa0236690-mRNA-1
chr2_2 CDS 9626351 9626425 9626351 ID=Msa0236690-mRNA-1:cds;Parent=Msa0236690-mRNA-1
chr2_2 CDS 9626664 9626770 9626664 ID=Msa0236690-mRNA-1:cds;Parent=Msa0236690-mRNA-1
chr2_2 three_prime_UTR 9626771 9626895 9626771 ID=Msa0236690-mRNA-1:three_prime_utr;Parent=Msa0236690-mRNA-1
Gene Sequence

>Msa0236690

ATGGTTGCAACAAAACCAATCATCACAATGTTTTCTCTCCAAACGAACCTCTTTCCCTCTCCAACGCTAACTACTCATTCCTCAACAAAGACCCTTCCCACCACCACTGTTACAGCTACTAAGCGAAGAGCCATAGTCTTCAGTTCAAGTCTTGTAGTTGCTTCTTGGCTTAATTTCCTTAATTTCAATTCAACACAACCACTTTCACTTTCACAACAACTACAAGATGAACTTCAACAACAAGAAGACCACCTTGTGCATTTGTTTCAGGAAACTTCACCATCTGTTGTTTCCATTAAAGACATTGAATTGACTAAAGTCCCCAAAACCTCTTCTAATGAAGTCATGCTAGATGAGGATGAAGATGCAAAAGTGGAAGGCACTGGTTCAGGCTTCATTTGGGATAAATTTGGCCACATAGTTACCAATTACCATGTTGTAGCTAAACTAGCTACCGATACTAGTGGTTTACAACGTTGTAAGGTTTTCCTAGTTGATGCCAATGGGAATAACTTTTCCAGGGAAGGGAAAATAATTGGGTTTGATCCATCATATGATCTAGCTGTTCTGAAGGTTGATGTTGATGGATACGAAATAAAGCCTGTTGTTATTGGTGAATCTAAGAATTTACATGTTGGACAGAGTTGCTTTGCCATTGGGAATCCTTATGGATATGAGAATACTCTCACAACAGGGGTGGTCAGTGGTTTAGGCCGCGAGATACCTTCCCCAAATGGAGGGGCTATCAAAGGAGCTATTCAAACTGATGCAGCTATTAATGCAGGAAATTCAGGCGGACCATTGATTGACTCTCATGGCCATGTTGTTGGAGTAAACACAGCCACCTTCACAAGGAAAGGTACCGGAGCTTCATCAGGAGTTAACTTTGCAATTCCCATCGACTCTGTAATTAGAAGTGTACCATCCCTTATTGTATATGGAACACCTTATACTAATAGGTTTTGA

Protein sequence

>Msa0236690

MVATKPIITMFSLQTNLFPSPTLTTHSSTKTLPTTTVTATKRRAIVFSSSLVVASWLNFLNFNSTQPLSLSQQLQDELQQQEDHLVHLFQETSPSVVSIKDIELTKVPKTSSNEVMLDEDEDAKVEGTGSGFIWDKFGHIVTNYHVVAKLATDTSGLQRCKVFLVDANGNNFSREGKIIGFDPSYDLAVLKVDVDGYEIKPVVIGESKNLHVGQSCFAIGNPYGYENTLTTGVVSGLGREIPSPNGGAIKGAIQTDAAINAGNSGGPLIDSHGHVVGVNTATFTRKGTGASSGVNFAIPIDSVIRSVPSLIVYGTPYTNRF*