AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0138340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0138340 MtrunA17_Chr1g0157481 96.716 335 9 1 1 335 1 333 0.0 620
Msa0138340 MtrunA17_Chr5g0447531 46.215 251 117 7 78 324 17 253 1.04e-63 202
Msa0138340 MtrunA17_Chr6g0453141 48.133 241 113 7 85 324 24 253 1.48e-62 200
Msa0138340 MtrunA17_Chr6g0453151 50.926 216 95 6 109 324 116 320 2.30e-62 201
Msa0138340 MtrunA17_Chr4g0051941 47.934 242 113 7 85 324 24 254 3.62e-62 199
Msa0138340 MtrunA17_Chr6g0453181 50.901 222 98 6 103 324 43 253 5.53e-62 198
Msa0138340 MtrunA17_Chr6g0453161 51.389 216 94 6 109 324 316 520 8.96e-59 197
Msa0138340 MtrunA17_Chr6g0453161 50.926 216 95 6 109 324 51 255 1.89e-58 197
Msa0138340 MtrunA17_Chr2g0318521 46.575 219 108 3 106 324 43 252 1.75e-58 189
Msa0138340 MtrunA17_Chr6g0476641 44.444 234 114 4 95 326 57 276 9.60e-50 167
Msa0138340 MtrunA17_Chr6g0464511 43.860 228 83 8 97 324 18 200 9.16e-44 149
Msa0138340 MtrunA17_Chr3g0133901 39.669 242 105 7 105 331 49 264 8.94e-41 143
Msa0138340 MtrunA17_Chr8g0345631 31.868 273 142 7 72 330 24 266 7.83e-36 130
Msa0138340 MtrunA17_Chr6g0462031 39.500 200 99 7 127 325 56 234 1.81e-35 129
Msa0138340 MtrunA17_Chr3g0092091 38.208 212 99 8 127 330 63 250 3.50e-34 125
Msa0138340 MtrunA17_Chr2g0301081 36.916 214 107 5 127 331 72 266 3.15e-33 124
Msa0138340 MtrunA17_Chr5g0448421 36.245 229 106 8 128 335 68 277 7.57e-33 123
Msa0138340 MtrunA17_Chr5g0448411 36.245 229 106 8 128 335 66 275 7.62e-33 123
Msa0138340 MtrunA17_Chr4g0006181 34.848 264 97 11 114 331 112 346 1.66e-28 113
Msa0138340 MtrunA17_Chr6g0453171 61.039 77 27 2 248 324 13 86 3.11e-24 95.1
Msa0138340 MtrunA17_Chr3g0113311 30.131 229 90 6 127 310 67 270 5.64e-18 82.8
Msa0138340 MtrunA17_Chr2g0279001 32.287 223 102 8 114 310 57 256 6.16e-17 79.3
Msa0138340 MtrunA17_Chr2g0296081 49.333 75 33 2 255 329 32 101 1.11e-16 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0138340 AT1G76570.1 76.744 301 63 2 37 331 28 327 2.24e-174 487
Msa0138340 AT3G27690.2 50.655 229 96 6 99 324 72 286 9.26e-67 212
Msa0138340 AT3G27690.1 50.655 229 96 6 99 324 40 254 1.11e-66 211
Msa0138340 AT2G05100.1 45.489 266 125 8 65 324 2 253 4.09e-65 207
Msa0138340 AT2G05070.1 49.782 229 98 6 99 324 39 253 5.72e-65 206
Msa0138340 AT1G29930.1 49.776 223 102 6 102 324 43 255 6.26e-62 199
Msa0138340 AT1G29920.1 49.776 223 102 6 102 324 43 255 8.11e-62 198
Msa0138340 AT1G29910.1 49.776 223 102 6 102 324 43 255 8.11e-62 198
Msa0138340 AT2G34430.1 49.123 228 106 6 97 324 37 254 2.63e-61 197
Msa0138340 AT2G34420.1 49.776 223 102 6 102 324 41 253 4.88e-61 196
Msa0138340 AT5G54270.1 46.119 219 109 3 106 324 44 253 1.03e-58 190
Msa0138340 AT2G05100.2 44.400 250 119 8 65 308 2 237 1.54e-53 179
Msa0138340 AT4G10340.1 47.297 222 97 5 109 326 62 267 4.64e-48 163
Msa0138340 AT1G45474.2 38.117 223 91 5 127 329 56 251 2.71e-39 139
Msa0138340 AT1G45474.1 38.117 223 91 5 127 329 56 251 2.71e-39 139
Msa0138340 AT3G54890.1 42.500 200 93 7 127 325 55 233 1.34e-37 135
Msa0138340 AT3G47470.1 34.979 243 123 9 96 330 36 251 4.87e-35 128
Msa0138340 AT1G19150.1 36.279 215 107 5 127 331 75 269 4.63e-34 126
Msa0138340 AT1G61520.3 35.926 270 124 11 89 335 30 273 9.01e-34 125
Msa0138340 AT1G61520.1 35.926 270 124 11 89 335 30 273 9.01e-34 125
Msa0138340 AT3G61470.1 34.234 222 116 5 120 330 53 255 3.37e-33 124
Msa0138340 AT1G61520.2 35.874 223 103 8 134 335 15 218 9.57e-30 113
Msa0138340 AT5G01530.1 34.221 263 100 10 114 331 55 289 1.46e-28 112
Msa0138340 AT3G08940.2 33.218 289 117 12 92 331 25 286 3.53e-28 111
Msa0138340 AT3G54890.2 33.333 228 85 7 99 325 38 199 1.43e-24 99.8
Msa0138340 AT3G54890.4 41.212 165 72 6 127 289 55 196 2.28e-23 96.7
Msa0138340 AT2G40100.1 32.407 216 102 9 110 310 82 268 1.28e-16 79.3
Msa0138340 AT5G28450.1 47.368 76 39 1 256 330 96 171 1.05e-15 74.3
Msa0138340 AT3G54890.3 43.529 85 41 2 127 211 55 132 1.44e-12 65.5

Find 118 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGATCTTTGGACAGATTTA+AGG 0.152281 1_3:-71172865 None:intergenic
AGATGTTGTGTTCTGGGTTT+TGG 0.172127 1_3:-71169620 None:intergenic
TTCAAAAGCTTCAGGATCTT+TGG 0.220610 1_3:-71172877 None:intergenic
GGGGAACTGCCTGGGGATTA+TGG 0.220707 1_3:+71170001 Msa0138340:CDS
TCCTGAGTTATTAGACCTAT+TGG 0.230242 1_3:+71170241 Msa0138340:CDS
CATGGCTGTTGTGCAGGTTT+TGG 0.262087 1_3:+71173168 Msa0138340:three_prime_UTR
GGGTAGCCATCATACGAAAT+AGG 0.272531 1_3:-71169965 None:intergenic
GCAGATGAGATGTTGTGTTC+TGG 0.276090 1_3:-71169627 None:intergenic
TTCAGCTCTTCAAAAGCTTC+AGG 0.290764 1_3:-71172885 None:intergenic
CCACAATATCTGGCGTATTC+TGG 0.301086 1_3:-71172768 None:intergenic
TGCTTCAATCCCACAATATC+TGG 0.308295 1_3:-71172778 None:intergenic
TCTTCATCTTGTTTCGTTAG+TGG 0.309561 1_3:+71169557 Msa0138340:CDS
AATCACACATTTCTTAAAAC+TGG 0.315099 1_3:-71173254 None:intergenic
GCTATAGCTAACAGTCCATT+AGG 0.317955 1_3:+71169716 Msa0138340:CDS
GATTATGGCTTTGACATTGC+TGG 0.328181 1_3:+71170016 Msa0138340:CDS
CTTTGAAGTGACTCCCCTAA+TGG 0.329323 1_3:-71169731 None:intergenic
ATCTCATCTGCAATGCTTCA+TGG 0.333732 1_3:+71169639 Msa0138340:CDS
TATTTGCCAAGTACTCCTTA+TGG 0.335720 1_3:+71172339 Msa0138340:CDS
CCTGAGTTATTAGACCTATT+GGG 0.347914 1_3:+71170242 Msa0138340:CDS
CTTATTACAGCTATTACTTC+AGG 0.349625 1_3:-71173211 None:intergenic
CAGATGAGATGTTGTGTTCT+GGG 0.350739 1_3:-71169626 None:intergenic
GAAGGCCTGTTGTTAATTAG+AGG 0.355824 1_3:-71173360 None:intergenic
AAGTAACTTAATTGTTTGTT+TGG 0.359607 1_3:-71173382 None:intergenic
TTCACTTTGTTGAACCTGTT+TGG 0.368694 1_3:+71170270 Msa0138340:CDS
CTGCAGTTCCACTGGATCCT+TGG 0.370306 1_3:-71170044 None:intergenic
TTGAGATATTGCATGCTCGC+TGG 0.371386 1_3:+71170189 Msa0138340:CDS
CCTTTCCACAACAACTTGCT+TGG 0.375325 1_3:+71173023 Msa0138340:CDS
CTTTCCACAACAACTTGCTT+GGG 0.383331 1_3:+71173024 Msa0138340:CDS
GGATCTTTGGACAGATTTAA+GGG 0.386269 1_3:-71172864 None:intergenic
GCTTCATGGCAAGAGCTTGC+TGG 0.387520 1_3:+71169653 Msa0138340:CDS
CTATAGCTAACAGTCCATTA+GGG 0.394585 1_3:+71169717 Msa0138340:CDS
CAAGGTCGGCCTCGTTGGCT+TGG 0.394675 1_3:+71169941 Msa0138340:CDS
CTTGGCCCTATTTCGTATGA+TGG 0.395875 1_3:+71169959 Msa0138340:CDS
GCTACCCATCATATCTCATT+GGG 0.406465 1_3:+71169981 Msa0138340:CDS
ATCTCATTGGGGAACTGCCT+GGG 0.413530 1_3:+71169993 Msa0138340:CDS
AGGAGTCCTTCATTTGTTGA+AGG 0.416604 1_3:+71173303 Msa0138340:three_prime_UTR
TATCTCATTGGGGAACTGCC+TGG 0.425964 1_3:+71169992 Msa0138340:CDS
ACAAAACTCCTCTAAATTCA+AGG 0.426529 1_3:+71169784 Msa0138340:CDS
CCTTCACTTAGCTGGAAGCC+AGG 0.428233 1_3:+71172300 Msa0138340:CDS
TCATTCCTCTAATTAACAAC+AGG 0.428524 1_3:+71173355 Msa0138340:three_prime_UTR
TTGGCAATGATGGCTTGGTT+AGG 0.434393 1_3:+71172933 Msa0138340:CDS
AAATGGACGCTTGGCAATGA+TGG 0.434782 1_3:+71172923 Msa0138340:CDS
AAATATTTCTGCAGTTCCAC+TGG 0.436745 1_3:-71170052 None:intergenic
AACTTAATTGTTTGTTTGGA+AGG 0.437121 1_3:-71173378 None:intergenic
AGCCTGAGCCTTGAATTTAG+AGG 0.441217 1_3:-71169792 None:intergenic
GGCTACCCATCATATCTCAT+TGG 0.443187 1_3:+71169980 Msa0138340:CDS
GGTAGCCATCATACGAAATA+GGG 0.443439 1_3:-71169964 None:intergenic
TAACCAACGCGCCACCAAAC+AGG 0.453677 1_3:-71170284 None:intergenic
CTTCCAGCTAAGTGAAGGCC+TGG 0.460265 1_3:-71172295 None:intergenic
GGATCAAACAATGCTCCTCC+AGG 0.460577 1_3:-71172843 None:intergenic
GCGTGGCATGGCTGTTGTGC+AGG 0.464275 1_3:+71173162 Msa0138340:three_prime_UTR
TGAGATATTGCATGCTCGCT+GGG 0.466215 1_3:+71170190 Msa0138340:CDS
CCAGAATACGCCAGATATTG+TGG 0.467314 1_3:+71172768 Msa0138340:CDS
CTAGATTACCTTGGCATCCC+AGG 0.469883 1_3:+71172277 Msa0138340:CDS
CGTTGGTTATTCCAAGCTCC+AGG 0.475483 1_3:+71170298 Msa0138340:CDS
CTCCTCTAAATTCAAGGCTC+AGG 0.476322 1_3:+71169790 Msa0138340:CDS
ATGGACAAGGTCGGCCTCGT+TGG 0.481460 1_3:+71169936 Msa0138340:CDS
AGTTCCCCAATGAGATATGA+TGG 0.482903 1_3:-71169986 None:intergenic
TGGGCTATGCTTGCATCTGT+TGG 0.483351 1_3:+71170209 Msa0138340:CDS
TGACATTGCTGGCCTTGCCA+AGG 0.493730 1_3:+71170027 Msa0138340:CDS
ATCCCAGGCCTTCACTTAGC+TGG 0.493884 1_3:+71172292 Msa0138340:CDS
ATATTGTGGGATTGAAGCAC+TGG 0.493998 1_3:+71172782 Msa0138340:CDS
GCATTACCATAAGGAGTACT+TGG 0.495126 1_3:-71172345 None:intergenic
TTCACACAAGCGGCACTGAC+GGG 0.495505 1_3:+71172960 Msa0138340:CDS
CTTCACACAAGCGGCACTGA+CGG 0.499189 1_3:+71172959 Msa0138340:CDS
GAAGTAATAGCTGTAATAAG+TGG 0.502568 1_3:+71173214 Msa0138340:three_prime_UTR
CAAAGTGAAAGACTCCCAAT+AGG 0.506429 1_3:-71170256 None:intergenic
AACAGACCTTCAACAAATGA+AGG 0.508939 1_3:-71173309 None:intergenic
GAACATGCTAACCTGGAGCT+TGG 0.511852 1_3:-71170309 None:intergenic
GGCTTGTCTCAAACTAAGAA+AGG 0.513058 1_3:+71169488 None:intergenic
CCAGGGTAGTTTATATCACC+AGG 0.514510 1_3:-71172825 None:intergenic
TGTTAATTAGAGGAATGATA+AGG 0.514974 1_3:-71173350 None:intergenic
CAAGCGGCACTGACGGGTAA+AGG 0.516467 1_3:+71172966 Msa0138340:CDS
GACGCTTGGCAATGATGGCT+TGG 0.532277 1_3:+71172928 Msa0138340:CDS
TCAAACTAAGAAAGGAGCTA+TGG 0.534985 1_3:+71169496 Msa0138340:exon
AACGAAACAAGATGAAGAAG+AGG 0.542469 1_3:-71169552 None:intergenic
ATTCAAGGCTCAGGCTGCCA+AGG 0.545741 1_3:+71169799 Msa0138340:CDS
CTTAGCTGGAAGCCAGGGAG+TGG 0.549922 1_3:+71172306 Msa0138340:CDS
CCCAATAGGTCTAATAACTC+AGG 0.553945 1_3:-71170242 None:intergenic
TTCCAGCTAAGTGAAGGCCT+GGG 0.557148 1_3:-71172294 None:intergenic
CAATTCAATGAAATTACACT+AGG 0.563647 1_3:+71173052 Msa0138340:CDS
TAGCAATCACAACCACTCCC+TGG 0.564935 1_3:-71172318 None:intergenic
AAAGCAGTTTACAGAGGAGA+GGG 0.566780 1_3:-71169594 None:intergenic
GTGACCCAAGCAAGTTGTTG+TGG 0.567405 1_3:-71173028 None:intergenic
GAACCTGTTTGGTGGCGCGT+TGG 0.568409 1_3:+71170281 Msa0138340:CDS
CCAAGCAAGTTGTTGTGGAA+AGG 0.568516 1_3:-71173023 None:intergenic
CCTCTAGGAATATATCTGCC+TGG 0.569936 1_3:+71172807 Msa0138340:CDS
ATTGAAGCACTGGAGCCTCT+AGG 0.571898 1_3:+71172792 Msa0138340:CDS
CAGAATACGCCAGATATTGT+GGG 0.576638 1_3:+71172769 Msa0138340:CDS
ACTTTGTTGAACCTGTTTGG+TGG 0.577642 1_3:+71170273 Msa0138340:CDS
AGTGAAGGCCTGGGATGCCA+AGG 0.580571 1_3:-71172285 None:intergenic
CAAAGCAGTTTACAGAGGAG+AGG 0.584363 1_3:-71169595 None:intergenic
CAAGTTGTTGTGGAAAGGAT+CGG 0.585579 1_3:-71173018 None:intergenic
CTTCACTTAGCTGGAAGCCA+GGG 0.598176 1_3:+71172301 Msa0138340:CDS
TCTCATTGGGGAACTGCCTG+GGG 0.598517 1_3:+71169994 Msa0138340:CDS
AAACAAGATGAAGAAGAGGA+AGG 0.602803 1_3:-71169548 None:intergenic
ATGTCAAAGCCATAATCCCC+AGG 0.603179 1_3:-71170010 None:intergenic
CTAAATATAAGAGACAATGT+AGG 0.609097 1_3:+71173100 Msa0138340:three_prime_UTR
ATAGCTTTGACAGCAGTGAA+AGG 0.610261 1_3:-71169698 None:intergenic
GTTAGGTTTCTTCACACAAG+CGG 0.612558 1_3:+71172950 Msa0138340:CDS
GGGGATACTCTAGATTACCT+TGG 0.624443 1_3:+71172268 Msa0138340:CDS
CCTGGCTTCCAGCTAAGTGA+AGG 0.626238 1_3:-71172300 None:intergenic
GTTCCACTGGATCCTTGGCA+AGG 0.626418 1_3:-71170039 None:intergenic
AGGTCCTGTACAAAACATTG+TGG 0.632483 1_3:+71172986 Msa0138340:CDS
GTTCCCCAATGAGATATGAT+GGG 0.633105 1_3:-71169985 None:intergenic
GCATTGATGCATTAGAGGCG+TGG 0.633762 1_3:+71173145 Msa0138340:three_prime_UTR
CCTGGTGATATAAACTACCC+TGG 0.634831 1_3:+71172825 Msa0138340:CDS
GATCAAACAATGCTCCTCCA+GGG 0.637834 1_3:-71172842 None:intergenic
CTAAGAAAGGAGCTATGGTG+TGG 0.655345 1_3:+71169501 Msa0138340:exon
TATAGCTAACAGTCCATTAG+GGG 0.659518 1_3:+71169718 Msa0138340:CDS
TGGGGCAAAGCAGTTTACAG+AGG 0.661215 1_3:-71169600 None:intergenic
GATGCATTAGAGGCGTGGCA+TGG 0.664896 1_3:+71173150 Msa0138340:three_prime_UTR
CCAGGCAGATATATTCCTAG+AGG 0.666249 1_3:-71172807 None:intergenic
TGGCCTTGCCAAGGATCCAG+TGG 0.670833 1_3:+71170036 Msa0138340:CDS
CTGCCAAGGCCAGAAAACAG+AGG 0.673764 1_3:+71169813 Msa0138340:CDS
CTACCCATCATATCTCATTG+GGG 0.701642 1_3:+71169982 Msa0138340:CDS
GAAATAGGGCCAAGCCAACG+AGG 0.723058 1_3:-71169950 None:intergenic
GGTGATATAAACTACCCTGG+AGG 0.752250 1_3:+71172828 Msa0138340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAATAAAAATAATTGAAAT+CGG - chr1_3:71169845-71169864 None:intergenic 10.0%
!! TTAATGGTAAATTAAATGAA+AGG - chr1_3:71170166-71170185 None:intergenic 15.0%
!!! AGGAATTTTTTTAATGATTA+TGG + chr1_3:71170658-71170677 Msa0138340:intron 15.0%
!!! GGAATTTTTTTAATGATTAT+GGG + chr1_3:71170659-71170678 Msa0138340:intron 15.0%
!!! ATTTTCTTAATTTCTTCAAA+TGG - chr1_3:71171284-71171303 None:intergenic 15.0%
!!! TTATTAGATTTTTAACTTAG+TGG + chr1_3:71172491-71172510 Msa0138340:intron 15.0%
!! AAAGTGAAAGAAATAAAAAA+TGG + chr1_3:71172906-71172925 Msa0138340:CDS 15.0%
!! ATAACATAACATAACCATAA+TGG - chr1_3:71170093-71170112 None:intergenic 20.0%
!! AGTTTATAAAGAGAATTGAT+AGG + chr1_3:71170836-71170855 Msa0138340:intron 20.0%
!! AGTTTATAAAGAGAATTGAT+AGG + chr1_3:71170836-71170855 Msa0138340:intron 20.0%
!!! TCCCTTTTTTTAATGATTAT+GGG + chr1_3:71170977-71170996 Msa0138340:intron 20.0%
!! TCCCATAATCATTAAAAAAA+GGG - chr1_3:71170663-71170682 None:intergenic 20.0%
!! AGTTTATAAAGAGAATTGAT+AGG + chr1_3:71170836-71170855 Msa0138340:intron 20.0%
!!! TTTTTTCCAATATTTGTCAA+CGG + chr1_3:71171250-71171269 Msa0138340:intron 20.0%
!!! CTTGAATTTAAAGTGTATTT+TGG + chr1_3:71171709-71171728 Msa0138340:intron 20.0%
!! ACCAAATAATTCTAATATTG+TGG - chr1_3:71171874-71171893 None:intergenic 20.0%
!! ACTCTTATTGTTAAATGTTA+AGG + chr1_3:71171898-71171917 Msa0138340:intron 20.0%
!! CTCTTATTGTTAAATGTTAA+GGG + chr1_3:71171899-71171918 Msa0138340:intron 20.0%
!! TCTTATTGTTAAATGTTAAG+GGG + chr1_3:71171900-71171919 Msa0138340:intron 20.0%
!! AACCAAGTTATTAGATAAAT+AGG + chr1_3:71171955-71171974 Msa0138340:intron 20.0%
!! ACCAAGTTATTAGATAAATA+GGG + chr1_3:71171956-71171975 Msa0138340:intron 20.0%
!! CAATTAATAAAGTGCAATAA+TGG - chr1_3:71172105-71172124 None:intergenic 20.0%
!! AAATAAAAAGTTTCAGTAGT+TGG + chr1_3:71172639-71172658 Msa0138340:intron 20.0%
!!! AACCATAAATTTGTTTCTTT+TGG + chr1_3:71172670-71172689 Msa0138340:intron 20.0%
!! AAGTAACTTAATTGTTTGTT+TGG - chr1_3:71173385-71173404 None:intergenic 20.0%
! GAAAATGTTTAAGGAATGAT+AGG - chr1_3:71169906-71169925 None:intergenic 25.0%
! AACAAACTTGTGTAAGATAA+AGG - chr1_3:71170358-71170377 None:intergenic 25.0%
!! CATTTTCCACTAATTAGAAA+GGG + chr1_3:71170401-71170420 Msa0138340:intron 25.0%
!! AATTTTCCCTTTCTAATTAG+TGG - chr1_3:71170410-71170429 None:intergenic 25.0%
! CATTCATTGTAAAAGTTTAC+CGG + chr1_3:71170627-71170646 Msa0138340:intron 25.0%
! AAAAAATTCCTTATTCATGC+CGG - chr1_3:71170649-71170668 None:intergenic 25.0%
! CATTCATTGTAAAAGTTTAC+CGG + chr1_3:71170627-71170646 Msa0138340:intron 25.0%
!!! CTCCCTTTTTTTAATGATTA+TGG + chr1_3:71170976-71170995 Msa0138340:intron 25.0%
! CTCCCATAATCATTAAAAAA+AGG - chr1_3:71170664-71170683 None:intergenic 25.0%
! TGATATGAGTTTATAAAGAG+AGG - chr1_3:71171199-71171218 None:intergenic 25.0%
!! AAGTTTTCAAACCTGTTATA+TGG + chr1_3:71171380-71171399 Msa0138340:intron 25.0%
! ACGGTAATATTATTTAAGAG+TGG - chr1_3:71171474-71171493 None:intergenic 25.0%
! GCCACAATATTAGAATTATT+TGG + chr1_3:71171870-71171889 Msa0138340:intron 25.0%
! TCCCTATTTATCTAATAACT+TGG - chr1_3:71171960-71171979 None:intergenic 25.0%
! AATTATTGGTATAGGGATAA+GGG - chr1_3:71172065-71172084 None:intergenic 25.0%
!! TTTTTACGAAGCAAATAAAC+TGG + chr1_3:71172188-71172207 Msa0138340:intron 25.0%
!!! GATTTTTAACTTAGTGGTAT+TGG + chr1_3:71172497-71172516 Msa0138340:intron 25.0%
! CTTTCATAACTCATTTGTTT+GGG + chr1_3:71172613-71172632 Msa0138340:intron 25.0%
! GTCCAAAAGAAACAAATTTA+TGG - chr1_3:71172675-71172694 None:intergenic 25.0%
! ATTCTTATCATAAAACAGGT+TGG + chr1_3:71172744-71172763 Msa0138340:intron 25.0%
! CAATTCAATGAAATTACACT+AGG + chr1_3:71173052-71173071 Msa0138340:CDS 25.0%
! CTAAATATAAGAGACAATGT+AGG + chr1_3:71173100-71173119 Msa0138340:three_prime_UTR 25.0%
! AATCACACATTTCTTAAAAC+TGG - chr1_3:71173257-71173276 None:intergenic 25.0%
! TGTTAATTAGAGGAATGATA+AGG - chr1_3:71173353-71173372 None:intergenic 25.0%
! AACTTAATTGTTTGTTTGGA+AGG - chr1_3:71173381-71173400 None:intergenic 25.0%
ACAAAACTCCTCTAAATTCA+AGG + chr1_3:71169784-71169803 Msa0138340:CDS 30.0%
CCAAAAGCTGAAAATGTTTA+AGG - chr1_3:71169915-71169934 None:intergenic 30.0%
! CCTTAAACATTTTCAGCTTT+TGG + chr1_3:71169912-71169931 Msa0138340:intron 30.0%
! AACATTTTCAGCTTTTGGTA+TGG + chr1_3:71169917-71169936 Msa0138340:intron 30.0%
TAACATAACCATAATGGCTT+GGG - chr1_3:71170087-71170106 None:intergenic 30.0%
ATAACATAACCATAATGGCT+TGG - chr1_3:71170088-71170107 None:intergenic 30.0%
TGCAATATCTCAAAGCTTAA+TGG - chr1_3:71170182-71170201 None:intergenic 30.0%
CCTTTCTAATTAGTGGAAAA+TGG - chr1_3:71170403-71170422 None:intergenic 30.0%
! CCATTTTCCACTAATTAGAA+AGG + chr1_3:71170400-71170419 Msa0138340:intron 30.0%
CATCTTGTAATGAGAAAGAA+AGG - chr1_3:71170707-71170726 None:intergenic 30.0%
ATAGATGCCAAATATCATCA+GGG + chr1_3:71170769-71170788 Msa0138340:intron 30.0%
CATATTTCCCTGATGATATT+TGG - chr1_3:71170779-71170798 None:intergenic 30.0%
TGTCAGTTAGTTATAAAGAG+AGG - chr1_3:71170880-71170899 None:intergenic 30.0%
TGGGAGATACAAATATAACA+TGG + chr1_3:71170996-71171015 Msa0138340:intron 30.0%
CATCTTGTAATGAGAAAGAA+AGG - chr1_3:71170707-71170726 None:intergenic 30.0%
ACATAGATGCCAAATATCAT+CGG + chr1_3:71170767-71170786 Msa0138340:intron 30.0%
! ATCAATTGTGTGCTTTGTTA+TGG + chr1_3:71171321-71171340 Msa0138340:intron 30.0%
! TCAATTGTGTGCTTTGTTAT+GGG + chr1_3:71171322-71171341 Msa0138340:intron 30.0%
! TTTTCAAACCTGTTATATGG+TGG + chr1_3:71171383-71171402 Msa0138340:intron 30.0%
TTTCAAACCTGTTATATGGT+GGG + chr1_3:71171384-71171403 Msa0138340:intron 30.0%
! AAACATACGAAAGCATATCA+CGG - chr1_3:71171493-71171512 None:intergenic 30.0%
CTCTTTATAAGACTTAGAGT+GGG - chr1_3:71171544-71171563 None:intergenic 30.0%
TAGATAAATAGGGATGCTAA+AGG + chr1_3:71171966-71171985 Msa0138340:intron 30.0%
GAATTATTGGTATAGGGATA+AGG - chr1_3:71172066-71172085 None:intergenic 30.0%
TCCCTATACCAATAATTCTT+TGG + chr1_3:71172068-71172087 Msa0138340:intron 30.0%
GCCAAAGAATTATTGGTATA+GGG - chr1_3:71172072-71172091 None:intergenic 30.0%
TGCCAAAGAATTATTGGTAT+AGG - chr1_3:71172073-71172092 None:intergenic 30.0%
!! AGAAAGTGCCAAAGAATTAT+TGG - chr1_3:71172079-71172098 None:intergenic 30.0%
AGCTAAATTTATTCTCATGC+AGG - chr1_3:71172149-71172168 None:intergenic 30.0%
! CATGAGAATAAATTTAGCTC+AGG + chr1_3:71172150-71172169 Msa0138340:intron 30.0%
CATCATCACTAACATCATAT+GGG - chr1_3:71172454-71172473 None:intergenic 30.0%
ACATCATCACTAACATCATA+TGG - chr1_3:71172455-71172474 None:intergenic 30.0%
! ATATGATGTTAGTGATGATG+TGG + chr1_3:71172454-71172473 Msa0138340:intron 30.0%
! TTAGTGGTATTGGATGTATT+GGG + chr1_3:71172507-71172526 Msa0138340:intron 30.0%
TACAAATCGAACATTTCTCA+TGG + chr1_3:71172542-71172561 Msa0138340:intron 30.0%
GCTTTCATAACTCATTTGTT+TGG + chr1_3:71172612-71172631 Msa0138340:intron 30.0%
AGCTACTGTTACTACTAATT+TGG + chr1_3:71172720-71172739 Msa0138340:intron 30.0%
GCTACTGTTACTACTAATTT+GGG + chr1_3:71172721-71172740 Msa0138340:intron 30.0%
TGGGATTCTTATCATAAAAC+AGG + chr1_3:71172740-71172759 Msa0138340:intron 30.0%
AGAAATAAAAAATGGACGCT+TGG + chr1_3:71172914-71172933 Msa0138340:CDS 30.0%
!! ATTTTGCATTGATGCATTAG+AGG + chr1_3:71173140-71173159 Msa0138340:three_prime_UTR 30.0%
CTTATTACAGCTATTACTTC+AGG - chr1_3:71173214-71173233 None:intergenic 30.0%
GAAGTAATAGCTGTAATAAG+TGG + chr1_3:71173214-71173233 Msa0138340:three_prime_UTR 30.0%
GAATGATAAGGTCACAAAAA+CGG - chr1_3:71173341-71173360 None:intergenic 30.0%
TCATTCCTCTAATTAACAAC+AGG + chr1_3:71173355-71173374 Msa0138340:three_prime_UTR 30.0%
TCAAACTAAGAAAGGAGCTA+TGG + chr1_3:71169496-71169515 Msa0138340:exon 35.0%
AAACAAGATGAAGAAGAGGA+AGG - chr1_3:71169551-71169570 None:intergenic 35.0%
AACGAAACAAGATGAAGAAG+AGG - chr1_3:71169555-71169574 None:intergenic 35.0%
! TCTTCATCTTGTTTCGTTAG+TGG + chr1_3:71169557-71169576 Msa0138340:CDS 35.0%
CTATAGCTAACAGTCCATTA+GGG + chr1_3:71169717-71169736 Msa0138340:CDS 35.0%
TATAGCTAACAGTCCATTAG+GGG + chr1_3:71169718-71169737 Msa0138340:CDS 35.0%
GGAGTCACTTCAAAGAAAAA+TGG + chr1_3:71169739-71169758 Msa0138340:CDS 35.0%
! AAATATTTCTGCAGTTCCAC+TGG - chr1_3:71170055-71170074 None:intergenic 35.0%
TCCTGAGTTATTAGACCTAT+TGG + chr1_3:71170241-71170260 Msa0138340:CDS 35.0%
CCTGAGTTATTAGACCTATT+GGG + chr1_3:71170242-71170261 Msa0138340:CDS 35.0%
TTCACTTTGTTGAACCTGTT+TGG + chr1_3:71170270-71170289 Msa0138340:CDS 35.0%
TCTCTCATTTCATCGACAAT+AGG + chr1_3:71170600-71170619 Msa0138340:intron 35.0%
CTCTCATTTCATCGACAATA+GGG + chr1_3:71170601-71170620 Msa0138340:intron 35.0%
AAAGTTTACCGGCATGAATA+AGG + chr1_3:71170638-71170657 Msa0138340:intron 35.0%
TGGGAGATGCAAATATAACA+TGG + chr1_3:71170678-71170697 Msa0138340:intron 35.0%
CATAGATGCCAAATATCATC+AGG + chr1_3:71170768-71170787 Msa0138340:intron 35.0%
AGAGAATTGATAGGCTCATA+AGG + chr1_3:71170845-71170864 Msa0138340:intron 35.0%
AGAGAATTGATAGGCTCAAT+AGG + chr1_3:71170911-71170930 Msa0138340:intron 35.0%
GAGAATTGATAGGCTCAATA+GGG + chr1_3:71170912-71170931 Msa0138340:intron 35.0%
AAAGTTTACCGGCATGAATT+TGG + chr1_3:71170949-71170968 Msa0138340:intron 35.0%
CATAGATGCCAAATATCATC+GGG + chr1_3:71170768-71170787 Msa0138340:intron 35.0%
ATAGATGCCAAATATCATCG+GGG + chr1_3:71171088-71171107 Msa0138340:intron 35.0%
CATATTTCCCCGATGATATT+TGG - chr1_3:71171098-71171117 None:intergenic 35.0%
CTTATCAGTTAGTTATGCAG+TGG - chr1_3:71171135-71171154 None:intergenic 35.0%
AGAGAATTGATAGGCTCATA+AGG + chr1_3:71170845-71170864 Msa0138340:intron 35.0%
AGAGTCCTATATTTCCAATG+TGG + chr1_3:71171219-71171238 Msa0138340:intron 35.0%
GAGTCCTATATTTCCAATGT+GGG + chr1_3:71171220-71171239 Msa0138340:intron 35.0%
AAGTCCCACATTGGAAATAT+AGG - chr1_3:71171227-71171246 None:intergenic 35.0%
TATATTTCCAATGTGGGACT+TGG + chr1_3:71171226-71171245 Msa0138340:intron 35.0%
ATATTTCCAATGTGGGACTT+GGG + chr1_3:71171227-71171246 Msa0138340:intron 35.0%
GTAGTACCGTTGACAAATAT+TGG - chr1_3:71171259-71171278 None:intergenic 35.0%
TTCAAACCTGTTATATGGTG+GGG + chr1_3:71171385-71171404 Msa0138340:intron 35.0%
! TGTTATATGGTGGGGAAAAA+GGG + chr1_3:71171393-71171412 Msa0138340:intron 35.0%
TCGACAACACTACATAGAAT+TGG + chr1_3:71171448-71171467 Msa0138340:intron 35.0%
CCTCTTTATAAGACTTAGAG+TGG - chr1_3:71171545-71171564 None:intergenic 35.0%
! CCACTCTAAGTCTTATAAAG+AGG + chr1_3:71171542-71171561 Msa0138340:intron 35.0%
TTTCGACAGGATAACAGTAT+TGG - chr1_3:71171601-71171620 None:intergenic 35.0%
AAGTTAGTGACAATTTCGAC+AGG - chr1_3:71171614-71171633 None:intergenic 35.0%
!!! TATTTTGGTATTCACCCTTG+TGG + chr1_3:71171724-71171743 Msa0138340:intron 35.0%
TGTATCAAGCTTAAGCTACA+AGG + chr1_3:71171842-71171861 Msa0138340:intron 35.0%
GTATCAAGCTTAAGCTACAA+GGG + chr1_3:71171843-71171862 Msa0138340:intron 35.0%
TATCAAGCTTAAGCTACAAG+GGG + chr1_3:71171844-71171863 Msa0138340:intron 35.0%
GTTAAATGTTAAGGGGCTAA+TGG + chr1_3:71171907-71171926 Msa0138340:intron 35.0%
TATTTGCCAAGTACTCCTTA+TGG + chr1_3:71172339-71172358 Msa0138340:CDS 35.0%
TGGATACAAGCATTACCATA+AGG - chr1_3:71172357-71172376 None:intergenic 35.0%
ATAATATTAGCAGAGCTCAC+AGG - chr1_3:71172393-71172412 None:intergenic 35.0%
! CTTAGTGGTATTGGATGTAT+TGG + chr1_3:71172506-71172525 Msa0138340:intron 35.0%
! GTTCGATTTGTAGAATCGAA+AGG - chr1_3:71172534-71172553 None:intergenic 35.0%
GGATCTTTGGACAGATTTAA+GGG - chr1_3:71172867-71172886 None:intergenic 35.0%
AGGATCTTTGGACAGATTTA+AGG - chr1_3:71172868-71172887 None:intergenic 35.0%
TTCAAAAGCTTCAGGATCTT+TGG - chr1_3:71172880-71172899 None:intergenic 35.0%
! TGATCCACAATGTTTTGTAC+AGG - chr1_3:71172993-71173012 None:intergenic 35.0%
! TGTGATTTTATTGTTGCGCA+AGG + chr1_3:71173270-71173289 Msa0138340:three_prime_UTR 35.0%
! GTGATTTTATTGTTGCGCAA+GGG + chr1_3:71173271-71173290 Msa0138340:three_prime_UTR 35.0%
AACAGACCTTCAACAAATGA+AGG - chr1_3:71173312-71173331 None:intergenic 35.0%
AAAGCAGTTTACAGAGGAGA+GGG - chr1_3:71169597-71169616 None:intergenic 40.0%
!! ATGTTGTGTTCTGGGTTTTG+GGG - chr1_3:71169621-71169640 None:intergenic 40.0%
!! GATGTTGTGTTCTGGGTTTT+GGG - chr1_3:71169622-71169641 None:intergenic 40.0%
!! AGATGTTGTGTTCTGGGTTT+TGG - chr1_3:71169623-71169642 None:intergenic 40.0%
CAGATGAGATGTTGTGTTCT+GGG - chr1_3:71169629-71169648 None:intergenic 40.0%
ATCTCATCTGCAATGCTTCA+TGG + chr1_3:71169639-71169658 Msa0138340:CDS 40.0%
!! ATAGCTTTGACAGCAGTGAA+AGG - chr1_3:71169701-71169720 None:intergenic 40.0%
GCTATAGCTAACAGTCCATT+AGG + chr1_3:71169716-71169735 Msa0138340:CDS 40.0%
! TTCAGCTTTTGGTATGGACA+AGG + chr1_3:71169923-71169942 Msa0138340:intron 40.0%
GGTAGCCATCATACGAAATA+GGG - chr1_3:71169967-71169986 None:intergenic 40.0%
GCTACCCATCATATCTCATT+GGG + chr1_3:71169981-71170000 Msa0138340:CDS 40.0%
CTACCCATCATATCTCATTG+GGG + chr1_3:71169982-71170001 Msa0138340:CDS 40.0%
GTTCCCCAATGAGATATGAT+GGG - chr1_3:71169988-71170007 None:intergenic 40.0%
AGTTCCCCAATGAGATATGA+TGG - chr1_3:71169989-71170008 None:intergenic 40.0%
!! GATTATGGCTTTGACATTGC+TGG + chr1_3:71170016-71170035 Msa0138340:CDS 40.0%
CCCAATAGGTCTAATAACTC+AGG - chr1_3:71170245-71170264 None:intergenic 40.0%
CAAAGTGAAAGACTCCCAAT+AGG - chr1_3:71170259-71170278 None:intergenic 40.0%
ACTTTGTTGAACCTGTTTGG+TGG + chr1_3:71170273-71170292 Msa0138340:CDS 40.0%
AGAGATAGAACATGCTAACC+TGG - chr1_3:71170319-71170338 None:intergenic 40.0%
!! ACACTTTTCAGGATCAGCAT+GGG - chr1_3:71170501-71170520 None:intergenic 40.0%
!! CTGATCCTGAAAAGTGTCAT+GGG + chr1_3:71170504-71170523 Msa0138340:intron 40.0%
CTTATCAGTTAGCTATGCAG+TGG - chr1_3:71170816-71170835 None:intergenic 40.0%
ATTGATAGGCTCATAAGGTG+AGG + chr1_3:71170850-71170869 Msa0138340:intron 40.0%
TCAGTTAGTTATGCAGTGGT+AGG - chr1_3:71171131-71171150 None:intergenic 40.0%
ATTGATAGGCTCATAAGGTG+AGG + chr1_3:71170850-71170869 Msa0138340:intron 40.0%
AAAAAACCCAAGTCCCACAT+TGG - chr1_3:71171236-71171255 None:intergenic 40.0%
! CTTTTTCCCCACCATATAAC+AGG - chr1_3:71171394-71171413 None:intergenic 40.0%
! CTGTTATATGGTGGGGAAAA+AGG + chr1_3:71171392-71171411 Msa0138340:intron 40.0%
GAAGCTATTCAGTTCACTTC+TGG + chr1_3:71171517-71171536 Msa0138340:intron 40.0%
AGGAATACAGATGTCCACAA+GGG - chr1_3:71171741-71171760 None:intergenic 40.0%
CATCTGTATTCCTGTGTGTA+AGG + chr1_3:71171748-71171767 Msa0138340:intron 40.0%
! TTGAACATCTGTTGGTTAGG+AGG - chr1_3:71171777-71171796 None:intergenic 40.0%
! GGTTTGAACATCTGTTGGTT+AGG - chr1_3:71171780-71171799 None:intergenic 40.0%
ATCAGAAAACTGCACTCTCA+GGG - chr1_3:71171809-71171828 None:intergenic 40.0%
AATCAGAAAACTGCACTCTC+AGG - chr1_3:71171810-71171829 None:intergenic 40.0%
GAAAGGACAAGAGAGAAAGA+CGG - chr1_3:71172043-71172062 None:intergenic 40.0%
TTGGTATAGGGATAAGGGAA+AGG - chr1_3:71172060-71172079 None:intergenic 40.0%
TGAGTCTTCCAATTTCTGAC+AGG + chr1_3:71172246-71172265 Msa0138340:intron 40.0%
GAGTCTTCCAATTTCTGACA+GGG + chr1_3:71172247-71172266 Msa0138340:intron 40.0%
AGTCTTCCAATTTCTGACAG+GGG + chr1_3:71172248-71172267 Msa0138340:intron 40.0%
!! GCATTACCATAAGGAGTACT+TGG - chr1_3:71172348-71172367 None:intergenic 40.0%
! CATGGCTTTTAATCCTTCGT+AGG + chr1_3:71172560-71172579 Msa0138340:intron 40.0%
TTTCAAGAGAACACCTACGA+AGG - chr1_3:71172576-71172595 None:intergenic 40.0%
CAGAATACGCCAGATATTGT+GGG + chr1_3:71172769-71172788 Msa0138340:CDS 40.0%
TGCTTCAATCCCACAATATC+TGG - chr1_3:71172781-71172800 None:intergenic 40.0%
ATATTGTGGGATTGAAGCAC+TGG + chr1_3:71172782-71172801 Msa0138340:CDS 40.0%
TTCAGCTCTTCAAAAGCTTC+AGG - chr1_3:71172888-71172907 None:intergenic 40.0%
GTTAGGTTTCTTCACACAAG+CGG + chr1_3:71172950-71172969 Msa0138340:CDS 40.0%
AGGTCCTGTACAAAACATTG+TGG + chr1_3:71172986-71173005 Msa0138340:CDS 40.0%
CAAGTTGTTGTGGAAAGGAT+CGG - chr1_3:71173021-71173040 None:intergenic 40.0%
! CTTTCCACAACAACTTGCTT+GGG + chr1_3:71173024-71173043 Msa0138340:CDS 40.0%
! AGGAGTCCTTCATTTGTTGA+AGG + chr1_3:71173303-71173322 Msa0138340:three_prime_UTR 40.0%
GAAGGCCTGTTGTTAATTAG+AGG - chr1_3:71173363-71173382 None:intergenic 40.0%
CTAAGAAAGGAGCTATGGTG+TGG + chr1_3:71169501-71169520 Msa0138340:exon 45.0%
CAAAGCAGTTTACAGAGGAG+AGG - chr1_3:71169598-71169617 None:intergenic 45.0%
GCAGATGAGATGTTGTGTTC+TGG - chr1_3:71169630-71169649 None:intergenic 45.0%
!! CTTTGAAGTGACTCCCCTAA+TGG - chr1_3:71169734-71169753 None:intergenic 45.0%
CTCCTCTAAATTCAAGGCTC+AGG + chr1_3:71169790-71169809 Msa0138340:CDS 45.0%
AGCCTGAGCCTTGAATTTAG+AGG - chr1_3:71169795-71169814 None:intergenic 45.0%
! GCTTTTGGTATGGACAAGGT+CGG + chr1_3:71169927-71169946 Msa0138340:intron 45.0%
CTTGGCCCTATTTCGTATGA+TGG + chr1_3:71169959-71169978 Msa0138340:CDS 45.0%
GGGTAGCCATCATACGAAAT+AGG - chr1_3:71169968-71169987 None:intergenic 45.0%
GGCTACCCATCATATCTCAT+TGG + chr1_3:71169980-71169999 Msa0138340:CDS 45.0%
ATGTCAAAGCCATAATCCCC+AGG - chr1_3:71170013-71170032 None:intergenic 45.0%
AAGTACCACCCAAGCCATTA+TGG + chr1_3:71170076-71170095 Msa0138340:intron 45.0%
! CATAACCATAATGGCTTGGG+TGG - chr1_3:71170084-71170103 None:intergenic 45.0%
TTGAGATATTGCATGCTCGC+TGG + chr1_3:71170189-71170208 Msa0138340:CDS 45.0%
TGAGATATTGCATGCTCGCT+GGG + chr1_3:71170190-71170209 Msa0138340:CDS 45.0%
!! GACACTTTTCAGGATCAGCA+TGG - chr1_3:71170502-71170521 None:intergenic 45.0%
!! GCTGATCCTGAAAAGTGTCA+TGG + chr1_3:71170503-71170522 Msa0138340:intron 45.0%
! GAACTCCCATGACACTTTTC+AGG - chr1_3:71170512-71170531 None:intergenic 45.0%
TCAGTTAGCTATGCAGTGGT+AGG - chr1_3:71170812-71170831 None:intergenic 45.0%
GGAGATGACCAAATTCATGC+CGG - chr1_3:71170960-71170979 None:intergenic 45.0%
GTTAGTTATGCAGTGGTAGG+CGG - chr1_3:71171128-71171147 None:intergenic 45.0%
GGTGAACAGTACACATACCT+GGG - chr1_3:71171580-71171599 None:intergenic 45.0%
TGGTGAACAGTACACATACC+TGG - chr1_3:71171581-71171600 None:intergenic 45.0%
CAGGAATACAGATGTCCACA+AGG - chr1_3:71171742-71171761 None:intergenic 45.0%
ATCGGGGTTTGAACATCTGT+TGG - chr1_3:71171785-71171804 None:intergenic 45.0%
AAACTGCACTCTCAGGGAAT+CGG - chr1_3:71171803-71171822 None:intergenic 45.0%
!! TGTTAAGGGGCTAATGGACT+TGG + chr1_3:71171913-71171932 Msa0138340:intron 45.0%
!! GTTAAGGGGCTAATGGACTT+GGG + chr1_3:71171914-71171933 Msa0138340:intron 45.0%
GTCTTCCAATTTCTGACAGG+GGG + chr1_3:71172249-71172268 Msa0138340:intron 45.0%
AGTATCCCCCTGTCAGAAAT+TGG - chr1_3:71172257-71172276 None:intergenic 45.0%
GGGGATACTCTAGATTACCT+TGG + chr1_3:71172268-71172287 Msa0138340:CDS 45.0%
TCACAGGACAAGGTGGATAA+TGG - chr1_3:71172377-71172396 None:intergenic 45.0%
! CATATGGGCTCAAAGAGTAC+TGG - chr1_3:71172439-71172458 None:intergenic 45.0%
CCACAATATCTGGCGTATTC+TGG - chr1_3:71172771-71172790 None:intergenic 45.0%
CCAGAATACGCCAGATATTG+TGG + chr1_3:71172768-71172787 Msa0138340:CDS 45.0%
CCAGGCAGATATATTCCTAG+AGG - chr1_3:71172810-71172829 None:intergenic 45.0%
! CCTCTAGGAATATATCTGCC+TGG + chr1_3:71172807-71172826 Msa0138340:CDS 45.0%
CCAGGGTAGTTTATATCACC+AGG - chr1_3:71172828-71172847 None:intergenic 45.0%
CCTGGTGATATAAACTACCC+TGG + chr1_3:71172825-71172844 Msa0138340:CDS 45.0%
GGTGATATAAACTACCCTGG+AGG + chr1_3:71172828-71172847 Msa0138340:CDS 45.0%
GATCAAACAATGCTCCTCCA+GGG - chr1_3:71172845-71172864 None:intergenic 45.0%
AAATGGACGCTTGGCAATGA+TGG + chr1_3:71172923-71172942 Msa0138340:CDS 45.0%
!! TTGGCAATGATGGCTTGGTT+AGG + chr1_3:71172933-71172952 Msa0138340:CDS 45.0%
CCAAGCAAGTTGTTGTGGAA+AGG - chr1_3:71173026-71173045 None:intergenic 45.0%
! CCTTTCCACAACAACTTGCT+TGG + chr1_3:71173023-71173042 Msa0138340:CDS 45.0%
TGGGGCAAAGCAGTTTACAG+AGG - chr1_3:71169603-71169622 None:intergenic 50.0%
!! CTACCTCTGTTTTCTGGCCT+TGG - chr1_3:71169819-71169838 None:intergenic 50.0%
! CGGTCACTACCTCTGTTTTC+TGG - chr1_3:71169825-71169844 None:intergenic 50.0%
TATCTCATTGGGGAACTGCC+TGG + chr1_3:71169992-71170011 Msa0138340:CDS 50.0%
ATCTCATTGGGGAACTGCCT+GGG + chr1_3:71169993-71170012 Msa0138340:CDS 50.0%
TGGGCTATGCTTGCATCTGT+TGG + chr1_3:71170209-71170228 Msa0138340:CDS 50.0%
! CGTTGGTTATTCCAAGCTCC+AGG + chr1_3:71170298-71170317 Msa0138340:CDS 50.0%
GAACATGCTAACCTGGAGCT+TGG - chr1_3:71170312-71170331 None:intergenic 50.0%
GTTAGCTATGCAGTGGTAGG+CGG - chr1_3:71170809-71170828 None:intergenic 50.0%
GAACAGTACACATACCTGGG+AGG - chr1_3:71171577-71171596 None:intergenic 50.0%
AACTGCACTCTCAGGGAATC+GGG - chr1_3:71171802-71171821 None:intergenic 50.0%
CTAGATTACCTTGGCATCCC+AGG + chr1_3:71172277-71172296 Msa0138340:CDS 50.0%
TTCCAGCTAAGTGAAGGCCT+GGG - chr1_3:71172297-71172316 None:intergenic 50.0%
CTTCACTTAGCTGGAAGCCA+GGG + chr1_3:71172301-71172320 Msa0138340:CDS 50.0%
TAGCAATCACAACCACTCCC+TGG - chr1_3:71172321-71172340 None:intergenic 50.0%
TTAGCAGAGCTCACAGGACA+AGG - chr1_3:71172387-71172406 None:intergenic 50.0%
CAGTCATTTGCGTCTGCAGA+TGG + chr1_3:71172694-71172713 Msa0138340:intron 50.0%
!! ATTGAAGCACTGGAGCCTCT+AGG + chr1_3:71172792-71172811 Msa0138340:CDS 50.0%
GGATCAAACAATGCTCCTCC+AGG - chr1_3:71172846-71172865 None:intergenic 50.0%
GTGACCCAAGCAAGTTGTTG+TGG - chr1_3:71173031-71173050 None:intergenic 50.0%
! GCATTGATGCATTAGAGGCG+TGG + chr1_3:71173145-71173164 Msa0138340:three_prime_UTR 50.0%
! CATGGCTGTTGTGCAGGTTT+TGG + chr1_3:71173168-71173187 Msa0138340:three_prime_UTR 50.0%
!! AGGTTTTGGCGTGTGACAGT+AGG + chr1_3:71173182-71173201 Msa0138340:three_prime_UTR 50.0%
!! TTGCGCAAGGGAGTTTTGTG+AGG + chr1_3:71173283-71173302 Msa0138340:three_prime_UTR 50.0%
GCTTCATGGCAAGAGCTTGC+TGG + chr1_3:71169653-71169672 Msa0138340:CDS 55.0%
ATTCAAGGCTCAGGCTGCCA+AGG + chr1_3:71169799-71169818 Msa0138340:CDS 55.0%
CTGCCAAGGCCAGAAAACAG+AGG + chr1_3:71169813-71169832 Msa0138340:CDS 55.0%
GAAATAGGGCCAAGCCAACG+AGG - chr1_3:71169953-71169972 None:intergenic 55.0%
TCTCATTGGGGAACTGCCTG+GGG + chr1_3:71169994-71170013 Msa0138340:CDS 55.0%
!! TGACATTGCTGGCCTTGCCA+AGG + chr1_3:71170027-71170046 Msa0138340:CDS 55.0%
GTTCCACTGGATCCTTGGCA+AGG - chr1_3:71170042-71170061 None:intergenic 55.0%
CTGCAGTTCCACTGGATCCT+TGG - chr1_3:71170047-71170066 None:intergenic 55.0%
TAACCAACGCGCCACCAAAC+AGG - chr1_3:71170287-71170306 None:intergenic 55.0%
AGAGGTTGTTTGCTCCTCCC+AGG + chr1_3:71171560-71171579 Msa0138340:intron 55.0%
TAGGAGGTCGCCTTACACAC+AGG - chr1_3:71171761-71171780 None:intergenic 55.0%
ACTGCACTCTCAGGGAATCG+GGG - chr1_3:71171801-71171820 None:intergenic 55.0%
ATCCCAGGCCTTCACTTAGC+TGG + chr1_3:71172292-71172311 Msa0138340:CDS 55.0%
CTTCCAGCTAAGTGAAGGCC+TGG - chr1_3:71172298-71172317 None:intergenic 55.0%
CCTGGCTTCCAGCTAAGTGA+AGG - chr1_3:71172303-71172322 None:intergenic 55.0%
CCTTCACTTAGCTGGAAGCC+AGG + chr1_3:71172300-71172319 Msa0138340:CDS 55.0%
GACGCTTGGCAATGATGGCT+TGG + chr1_3:71172928-71172947 Msa0138340:CDS 55.0%
! CTTCACACAAGCGGCACTGA+CGG + chr1_3:71172959-71172978 Msa0138340:CDS 55.0%
!! TTCACACAAGCGGCACTGAC+GGG + chr1_3:71172960-71172979 Msa0138340:CDS 55.0%
! GATGCATTAGAGGCGTGGCA+TGG + chr1_3:71173150-71173169 Msa0138340:three_prime_UTR 55.0%
ATGGACAAGGTCGGCCTCGT+TGG + chr1_3:71169936-71169955 Msa0138340:CDS 60.0%
GGGGAACTGCCTGGGGATTA+TGG + chr1_3:71170001-71170020 Msa0138340:CDS 60.0%
! TGGCCTTGCCAAGGATCCAG+TGG + chr1_3:71170036-71170055 Msa0138340:CDS 60.0%
!! GAACCTGTTTGGTGGCGCGT+TGG + chr1_3:71170281-71170300 Msa0138340:CDS 60.0%
AGTGAAGGCCTGGGATGCCA+AGG - chr1_3:71172288-71172307 None:intergenic 60.0%
CTTAGCTGGAAGCCAGGGAG+TGG + chr1_3:71172306-71172325 Msa0138340:CDS 60.0%
GCAGAGCTCACAGGACAAGG+TGG - chr1_3:71172384-71172403 None:intergenic 60.0%
!! CAAGCGGCACTGACGGGTAA+AGG + chr1_3:71172966-71172985 Msa0138340:CDS 60.0%
! CAAGGTCGGCCTCGTTGGCT+TGG + chr1_3:71169941-71169960 Msa0138340:CDS 65.0%
GCGTGGCATGGCTGTTGTGC+AGG + chr1_3:71173162-71173181 Msa0138340:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 71169492 71173444 71169492 ID=Msa0138340;Name=Msa0138340
chr1_3 mRNA 71169492 71173444 71169492 ID=Msa0138340-mRNA-1;Parent=Msa0138340;Name=Msa0138340-mRNA-1;_AED=0.17;_eAED=0.17;_QI=23|1|1|1|1|1|5|371|335
chr1_3 exon 71169492 71169834 71169492 ID=Msa0138340-mRNA-1:exon:24722;Parent=Msa0138340-mRNA-1
chr1_3 exon 71169928 71170077 71169928 ID=Msa0138340-mRNA-1:exon:24723;Parent=Msa0138340-mRNA-1
chr1_3 exon 71170187 71170319 71170187 ID=Msa0138340-mRNA-1:exon:24724;Parent=Msa0138340-mRNA-1
chr1_3 exon 71172268 71172360 71172268 ID=Msa0138340-mRNA-1:exon:24725;Parent=Msa0138340-mRNA-1
chr1_3 exon 71172762 71173444 71172762 ID=Msa0138340-mRNA-1:exon:24726;Parent=Msa0138340-mRNA-1
chr1_3 five_prime_UTR 71169492 71169514 71169492 ID=Msa0138340-mRNA-1:five_prime_utr;Parent=Msa0138340-mRNA-1
chr1_3 CDS 71169515 71169834 71169515 ID=Msa0138340-mRNA-1:cds;Parent=Msa0138340-mRNA-1
chr1_3 CDS 71169928 71170077 71169928 ID=Msa0138340-mRNA-1:cds;Parent=Msa0138340-mRNA-1
chr1_3 CDS 71170187 71170319 71170187 ID=Msa0138340-mRNA-1:cds;Parent=Msa0138340-mRNA-1
chr1_3 CDS 71172268 71172360 71172268 ID=Msa0138340-mRNA-1:cds;Parent=Msa0138340-mRNA-1
chr1_3 CDS 71172762 71173073 71172762 ID=Msa0138340-mRNA-1:cds;Parent=Msa0138340-mRNA-1
chr1_3 three_prime_UTR 71173074 71173444 71173074 ID=Msa0138340-mRNA-1:three_prime_utr;Parent=Msa0138340-mRNA-1
Gene Sequence

>Msa0138340

ATGGTGTGGCTTCAACTTCAATCAGTGACGTGTCCTTCCTCTTCTTCATCTTGTTTCGTTAGTGGCTCTAGTCGCTGCTCCCTCTCCTCTGTAAACTGCTTTGCCCCAAAACCCAGAACACAACATCTCATCTGCAATGCTTCATGGCAAGAGCTTGCTGGAGTTTTACTATTCTCAGCGATTCCTTTCACTGCTGTCAAAGCTATAGCTAACAGTCCATTAGGGGAGTCACTTCAAAGAAAAATGGAAGAGACTAAGCAACTTGCTGTACAAAACTCCTCTAAATTCAAGGCTCAGGCTGCCAAGGCCAGAAAACAGAGCTTTTGGTATGGACAAGGTCGGCCTCGTTGGCTTGGCCCTATTTCGTATGATGGCTACCCATCATATCTCATTGGGGAACTGCCTGGGGATTATGGCTTTGACATTGCTGGCCTTGCCAAGGATCCAGTGGAACTGCAGAAATATTTCAACTTTGAGATATTGCATGCTCGCTGGGCTATGCTTGCATCTGTTGGTGCTCTCATTCCTGAGTTATTAGACCTATTGGGAGTCTTTCACTTTGTTGAACCTGTTTGGTGGCGCGTTGGTTATTCCAAGCTCCAGGGGGATACTCTAGATTACCTTGGCATCCCAGGCCTTCACTTAGCTGGAAGCCAGGGAGTGGTTGTGATTGCTATTTGCCAAGTACTCCTTATGGTTGGACCAGAATACGCCAGATATTGTGGGATTGAAGCACTGGAGCCTCTAGGAATATATCTGCCTGGTGATATAAACTACCCTGGAGGAGCATTGTTTGATCCCTTAAATCTGTCCAAAGATCCTGAAGCTTTTGAAGAGCTGAAAGTGAAAGAAATAAAAAATGGACGCTTGGCAATGATGGCTTGGTTAGGTTTCTTCACACAAGCGGCACTGACGGGTAAAGGTCCTGTACAAAACATTGTGGATCATATCTCCGATCCTTTCCACAACAACTTGCTTGGGTCACTCAATTCAATGAAATTACACTAG

Protein sequence

>Msa0138340

MVWLQLQSVTCPSSSSSCFVSGSSRCSLSSVNCFAPKPRTQHLICNASWQELAGVLLFSAIPFTAVKAIANSPLGESLQRKMEETKQLAVQNSSKFKAQAAKARKQSFWYGQGRPRWLGPISYDGYPSYLIGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAMLASVGALIPELLDLLGVFHFVEPVWWRVGYSKLQGDTLDYLGIPGLHLAGSQGVVVIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFEELKVKEIKNGRLAMMAWLGFFTQAALTGKGPVQNIVDHISDPFHNNLLGSLNSMKLH*