AlfalfaGEDB | Msa0138340

M. sativa cultivar zhongmu-4 / Msa0138340

KEGG: K14172
GO: GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363
PFAM: PF00504.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0138340	XP_013466227.1	96.716	335	9	1	1	335	1	333	0.0	620

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0138340	sp\|Q9C9K1\|CB7_ARATH	76.744	301	63	2	37	331	28	327	2.20e-173	487

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0138340	A0A072VE21	96.716	335	9	1	1	335	1	333	0.0	620

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0138340	0.848918	4.512001e-60	-8.615850e-47
Msa0000220	Msa0138340	0.843441	1.398287e-58	-8.615850e-47
Msa0000610	Msa0138340	0.878396	2.906143e-69	-8.615850e-47
Msa0000800	Msa0138340	-0.833324	5.694379e-56	-8.615850e-47
Msa0001040	Msa0138340	0.843801	1.120648e-58	-8.615850e-47
Msa0001420	Msa0138340	0.801303	9.595635e-49	-8.615850e-47
Msa0001510	Msa0138340	0.902555	8.604661e-79	-8.615850e-47
Msa0001540	Msa0138340	0.825637	4.205255e-54	-8.615850e-47
Msa0002110	Msa0138340	0.872445	3.163858e-67	-8.615850e-47
Msa0002690	Msa0138340	0.915642	4.620403e-85	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0138340	MtrunA17_Chr1g0157481	96.716	335	9	1	1	335	1	333	0.0	620
Msa0138340	MtrunA17_Chr5g0447531	46.215	251	117	7	78	324	17	253	1.04e-63	202
Msa0138340	MtrunA17_Chr6g0453141	48.133	241	113	7	85	324	24	253	1.48e-62	200
Msa0138340	MtrunA17_Chr6g0453151	50.926	216	95	6	109	324	116	320	2.30e-62	201
Msa0138340	MtrunA17_Chr4g0051941	47.934	242	113	7	85	324	24	254	3.62e-62	199
Msa0138340	MtrunA17_Chr6g0453181	50.901	222	98	6	103	324	43	253	5.53e-62	198
Msa0138340	MtrunA17_Chr6g0453161	51.389	216	94	6	109	324	316	520	8.96e-59	197
Msa0138340	MtrunA17_Chr6g0453161	50.926	216	95	6	109	324	51	255	1.89e-58	197
Msa0138340	MtrunA17_Chr2g0318521	46.575	219	108	3	106	324	43	252	1.75e-58	189
Msa0138340	MtrunA17_Chr6g0476641	44.444	234	114	4	95	326	57	276	9.60e-50	167

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0138340	AT1G76570.1	76.744	301	63	2	37	331	28	327	2.24e-174	487
Msa0138340	AT3G27690.2	50.655	229	96	6	99	324	72	286	9.26e-67	212
Msa0138340	AT3G27690.1	50.655	229	96	6	99	324	40	254	1.11e-66	211
Msa0138340	AT2G05100.1	45.489	266	125	8	65	324	2	253	4.09e-65	207
Msa0138340	AT2G05070.1	49.782	229	98	6	99	324	39	253	5.72e-65	206
Msa0138340	AT1G29930.1	49.776	223	102	6	102	324	43	255	6.26e-62	199
Msa0138340	AT1G29920.1	49.776	223	102	6	102	324	43	255	8.11e-62	198
Msa0138340	AT1G29910.1	49.776	223	102	6	102	324	43	255	8.11e-62	198
Msa0138340	AT2G34430.1	49.123	228	106	6	97	324	37	254	2.63e-61	197
Msa0138340	AT2G34420.1	49.776	223	102	6	102	324	41	253	4.88e-61	196

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Find 118 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGATGAAGAAGAGGA+AGG	0.602803	1_3:-71169548	None:intergenic
AAAGCAGTTTACAGAGGAGA+GGG	0.566780	1_3:-71169594	None:intergenic
AAATATTTCTGCAGTTCCAC+TGG	0.436745	1_3:-71170052	None:intergenic
AAATGGACGCTTGGCAATGA+TGG	0.434782	1_3:+71172923	Msa0138340:CDS
AACAGACCTTCAACAAATGA+AGG	0.508939	1_3:-71173309	None:intergenic
AACGAAACAAGATGAAGAAG+AGG	0.542469	1_3:-71169552	None:intergenic
AACTTAATTGTTTGTTTGGA+AGG	0.437121	1_3:-71173378	None:intergenic
AAGTAACTTAATTGTTTGTT+TGG	0.359607	1_3:-71173382	None:intergenic
AATCACACATTTCTTAAAAC+TGG	0.315099	1_3:-71173254	None:intergenic
ACAAAACTCCTCTAAATTCA+AGG	0.426529	1_3:+71169784	Msa0138340:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAAACTCCTCTAAATTCA+AGG	+	chr1_3:71169784-71169803	Msa0138340:CDS	30.0%
CCAAAAGCTGAAAATGTTTA+AGG	-	chr1_3:71169915-71169934	None:intergenic	30.0%
TAACATAACCATAATGGCTT+GGG	-	chr1_3:71170087-71170106	None:intergenic	30.0%
ATAACATAACCATAATGGCT+TGG	-	chr1_3:71170088-71170107	None:intergenic	30.0%
TGCAATATCTCAAAGCTTAA+TGG	-	chr1_3:71170182-71170201	None:intergenic	30.0%
CCTTTCTAATTAGTGGAAAA+TGG	-	chr1_3:71170403-71170422	None:intergenic	30.0%
CATCTTGTAATGAGAAAGAA+AGG	-	chr1_3:71170707-71170726	None:intergenic	30.0%
ATAGATGCCAAATATCATCA+GGG	+	chr1_3:71170769-71170788	Msa0138340:intron	30.0%
CATATTTCCCTGATGATATT+TGG	-	chr1_3:71170779-71170798	None:intergenic	30.0%
TGTCAGTTAGTTATAAAGAG+AGG	-	chr1_3:71170880-71170899	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	71169492	71173444	71169492	ID=Msa0138340;Name=Msa0138340
chr1_3	mRNA	71169492	71173444	71169492	ID=Msa0138340-mRNA-1;Parent=Msa0138340;Name=Msa0138340-mRNA-1;_AED=0.17;_eAED=0.17;_QI=23\|1\|1\|1\|1\|1\|5\|371\|335
chr1_3	exon	71169492	71169834	71169492	ID=Msa0138340-mRNA-1:exon:24722;Parent=Msa0138340-mRNA-1
chr1_3	exon	71169928	71170077	71169928	ID=Msa0138340-mRNA-1:exon:24723;Parent=Msa0138340-mRNA-1
chr1_3	exon	71170187	71170319	71170187	ID=Msa0138340-mRNA-1:exon:24724;Parent=Msa0138340-mRNA-1
chr1_3	exon	71172268	71172360	71172268	ID=Msa0138340-mRNA-1:exon:24725;Parent=Msa0138340-mRNA-1
chr1_3	exon	71172762	71173444	71172762	ID=Msa0138340-mRNA-1:exon:24726;Parent=Msa0138340-mRNA-1
chr1_3	five_prime_UTR	71169492	71169514	71169492	ID=Msa0138340-mRNA-1:five_prime_utr;Parent=Msa0138340-mRNA-1
chr1_3	CDS	71169515	71169834	71169515	ID=Msa0138340-mRNA-1:cds;Parent=Msa0138340-mRNA-1
chr1_3	CDS	71169928	71170077	71169928	ID=Msa0138340-mRNA-1:cds;Parent=Msa0138340-mRNA-1
chr1_3	CDS	71170187	71170319	71170187	ID=Msa0138340-mRNA-1:cds;Parent=Msa0138340-mRNA-1
chr1_3	CDS	71172268	71172360	71172268	ID=Msa0138340-mRNA-1:cds;Parent=Msa0138340-mRNA-1
chr1_3	CDS	71172762	71173073	71172762	ID=Msa0138340-mRNA-1:cds;Parent=Msa0138340-mRNA-1
chr1_3	three_prime_UTR	71173074	71173444	71173074	ID=Msa0138340-mRNA-1:three_prime_utr;Parent=Msa0138340-mRNA-1

Gene Sequence

>Msa0138340

ATGGTGTGGCTTCAACTTCAATCAGTGACGTGTCCTTCCTCTTCTTCATCTTGTTTCGTTAGTGGCTCTAGTCGCTGCTCCCTCTCCTCTGTAAACTGCTTTGCCCCAAAACCCAGAACACAACATCTCATCTGCAATGCTTCATGGCAAGAGCTTGCTGGAGTTTTACTATTCTCAGCGATTCCTTTCACTGCTGTCAAAGCTATAGCTAACAGTCCATTAGGGGAGTCACTTCAAAGAAAAATGGAAGAGACTAAGCAACTTGCTGTACAAAACTCCTCTAAATTCAAGGCTCAGGCTGCCAAGGCCAGAAAACAGAGCTTTTGGTATGGACAAGGTCGGCCTCGTTGGCTTGGCCCTATTTCGTATGATGGCTACCCATCATATCTCATTGGGGAACTGCCTGGGGATTATGGCTTTGACATTGCTGGCCTTGCCAAGGATCCAGTGGAACTGCAGAAATATTTCAACTTTGAGATATTGCATGCTCGCTGGGCTATGCTTGCATCTGTTGGTGCTCTCATTCCTGAGTTATTAGACCTATTGGGAGTCTTTCACTTTGTTGAACCTGTTTGGTGGCGCGTTGGTTATTCCAAGCTCCAGGGGGATACTCTAGATTACCTTGGCATCCCAGGCCTTCACTTAGCTGGAAGCCAGGGAGTGGTTGTGATTGCTATTTGCCAAGTACTCCTTATGGTTGGACCAGAATACGCCAGATATTGTGGGATTGAAGCACTGGAGCCTCTAGGAATATATCTGCCTGGTGATATAAACTACCCTGGAGGAGCATTGTTTGATCCCTTAAATCTGTCCAAAGATCCTGAAGCTTTTGAAGAGCTGAAAGTGAAAGAAATAAAAAATGGACGCTTGGCAATGATGGCTTGGTTAGGTTTCTTCACACAAGCGGCACTGACGGGTAAAGGTCCTGTACAAAACATTGTGGATCATATCTCCGATCCTTTCCACAACAACTTGCTTGGGTCACTCAATTCAATGAAATTACACTAG

Protein sequence

>Msa0138340

MVWLQLQSVTCPSSSSSCFVSGSSRCSLSSVNCFAPKPRTQHLICNASWQELAGVLLFSAIPFTAVKAIANSPLGESLQRKMEETKQLAVQNSSKFKAQAAKARKQSFWYGQGRPRWLGPISYDGYPSYLIGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAMLASVGALIPELLDLLGVFHFVEPVWWRVGYSKLQGDTLDYLGIPGLHLAGSQGVVVIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFEELKVKEIKNGRLAMMAWLGFFTQAALTGKGPVQNIVDHISDPFHNNLLGSLNSMKLH*