AlfalfaGEDB | Msa0455380

M. sativa cultivar zhongmu-4 / Msa0455380

KEGG: K17046
GO: -
PFAM: PF08766.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0455380	XP_013460046.1	82.921	849	58	8	1	819	1	792	0.0	1005

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0455380	sp\|Q9SUA1\|DEKP3_ARATH	49.395	496	203	16	264	731	236	711	4.30e-93	312

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0455380	A0A072UWT2	82.921	849	58	8	1	819	1	792	0.0	1005

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0053240	Msa0455380	0.816351	5.782725e-52	-8.615850e-47
Msa0199570	Msa0455380	0.819683	1.021023e-52	-8.615850e-47
Msa0259160	Msa0455380	0.808972	2.381397e-50	-8.615850e-47
Msa0319330	Msa0455380	0.815682	8.158043e-52	-8.615850e-47
Msa0455380	Msa0687230	0.848526	5.794773e-60	-8.615850e-47
Msa0455380	Msa0699190	0.819393	1.189267e-52	-8.615850e-47
Msa0455380	Msa0707390	0.812347	4.438421e-51	-8.615850e-47
Msa0455380	Msa0782070	-0.828020	1.134059e-54	-8.615850e-47
Msa0455380	Msa0832820	0.804724	1.883172e-49	-8.615850e-47
Msa0455380	Msa0897400	0.805408	1.354032e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0455380	MtrunA17_Chr3g0102341	82.921	849	58	8	1	819	1	792	0.0	1005
Msa0455380	MtrunA17_Chr5g0446481	43.658	749	334	18	1	681	1	729	1.35e-111	363
Msa0455380	MtrunA17_Chr5g0446481	46.203	316	105	9	498	811	700	952	2.20e-40	160
Msa0455380	MtrunA17_Chr3g0132011	39.848	394	205	10	341	721	91	465	6.08e-61	216
Msa0455380	MtrunA17_Chr5g0412041	70.690	58	10	2	720	777	191	241	3.56e-16	82.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0455380	AT4G26630.2	49.395	496	203	16	264	731	236	711	4.37e-94	312
Msa0455380	AT4G26630.1	49.395	496	203	16	264	731	236	711	4.37e-94	312
Msa0455380	AT5G55660.1	45.098	510	201	12	316	810	297	742	1.22e-93	311
Msa0455380	AT3G48710.1	39.062	384	196	11	341	717	53	405	3.54e-54	195
Msa0455380	AT5G63550.1	52.880	191	84	4	343	529	95	283	3.19e-52	191
Msa0455380	AT5G63550.2	52.604	192	84	5	343	529	95	284	9.40e-51	187

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Find 217 sgRNAs with CRISPR-Local

Find 667 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGAAGATAAGGCAG+AGG	0.559965	3_3:-48263879	Msa0455380:CDS
AAACGAGGTACACCAAGGTC+TGG	0.545991	3_3:-48260819	Msa0455380:CDS
AAACTTACAGATTCAGGATT+TGG	0.265584	3_3:+48265656	None:intergenic
AAAGAAGAAGATAAGGCAGA+GGG	0.632326	3_3:-48263878	Msa0455380:CDS
AAAGACTTGGGAACTGATGG+AGG	0.575253	3_3:-48264688	Msa0455380:CDS
AAAGAGAATAAGGAAGTTGA+TGG	0.418724	3_3:-48264319	Msa0455380:CDS
AAAGAGGAGAAGAAAGACGA+AGG	0.585080	3_3:-48264391	Msa0455380:CDS
AAAGAGGAGAAGAAAGATGA+TGG	0.445699	3_3:-48264355	Msa0455380:CDS
AAAGAGGATAAGAAAGCCGA+TGG	0.586492	3_3:-48264532	Msa0455380:CDS
AAAGATGAGATGGAAGTTGA+TGG	0.493558	3_3:-48264247	Msa0455380:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTTACAGATTCAGGATT+TGG	+	chr3_3:48256605-48256624	None:intergenic	30.0%
AGTAGAAAACTTACAGATTC+AGG	+	chr3_3:48256611-48256630	None:intergenic	30.0%
CTTAATTATTCATCCATCTC+AGG	-	chr3_3:48256990-48257009	Msa0455380:CDS	30.0%
AAATACCCTTCTGTTGTAAA+TGG	-	chr3_3:48257265-48257284	Msa0455380:intron	30.0%
TGAAGAAGATAAGAAAGTTG+AGG	-	chr3_3:48257650-48257669	Msa0455380:intron	30.0%
GAAGAAGATAAGAAAGTTGA+GGG	-	chr3_3:48257651-48257670	Msa0455380:intron	30.0%
AGGATAAGAAAGATGAAGAT+GGG	-	chr3_3:48257691-48257710	Msa0455380:intron	30.0%
GAAGTAAAAGAGGATAAGAA+AGG	-	chr3_3:48257720-48257739	Msa0455380:intron	30.0%
GGAAGAAGTAAAAGAGAATA+AGG	-	chr3_3:48257929-48257948	Msa0455380:intron	30.0%
AAAGAGAATAAGGAAGTTGA+TGG	-	chr3_3:48257939-48257958	Msa0455380:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	48256521	48265759	48256521	ID=Msa0455380;Name=Msa0455380
chr3_3	mRNA	48256521	48265759	48256521	ID=Msa0455380-mRNA-1;Parent=Msa0455380;Name=Msa0455380-mRNA-1;_AED=0.09;_eAED=0.09;_QI=160\|0.83\|0.92\|0.92\|0.91\|0.84\|13\|372\|832
chr3_3	exon	48256521	48257038	48256521	ID=Msa0455380-mRNA-1:exon:8945;Parent=Msa0455380-mRNA-1
chr3_3	exon	48257491	48257521	48257491	ID=Msa0455380-mRNA-1:exon:8944;Parent=Msa0455380-mRNA-1
chr3_3	exon	48257763	48257933	48257763	ID=Msa0455380-mRNA-1:exon:8943;Parent=Msa0455380-mRNA-1
chr3_3	exon	48258293	48258402	48258293	ID=Msa0455380-mRNA-1:exon:8942;Parent=Msa0455380-mRNA-1
chr3_3	exon	48258540	48259014	48258540	ID=Msa0455380-mRNA-1:exon:8941;Parent=Msa0455380-mRNA-1
chr3_3	exon	48260788	48260868	48260788	ID=Msa0455380-mRNA-1:exon:8940;Parent=Msa0455380-mRNA-1
chr3_3	exon	48260989	48261066	48260989	ID=Msa0455380-mRNA-1:exon:8939;Parent=Msa0455380-mRNA-1
chr3_3	exon	48261555	48261662	48261555	ID=Msa0455380-mRNA-1:exon:8938;Parent=Msa0455380-mRNA-1
chr3_3	exon	48261879	48261938	48261879	ID=Msa0455380-mRNA-1:exon:8937;Parent=Msa0455380-mRNA-1
chr3_3	exon	48262118	48262197	48262118	ID=Msa0455380-mRNA-1:exon:8936;Parent=Msa0455380-mRNA-1
chr3_3	exon	48263549	48263582	48263549	ID=Msa0455380-mRNA-1:exon:8935;Parent=Msa0455380-mRNA-1
chr3_3	exon	48263679	48264867	48263679	ID=Msa0455380-mRNA-1:exon:8934;Parent=Msa0455380-mRNA-1
chr3_3	exon	48265664	48265759	48265664	ID=Msa0455380-mRNA-1:exon:8933;Parent=Msa0455380-mRNA-1
chr3_3	five_prime_UTR	48265664	48265759	48265664	ID=Msa0455380-mRNA-1:five_prime_utr;Parent=Msa0455380-mRNA-1
chr3_3	five_prime_UTR	48264804	48264867	48264804	ID=Msa0455380-mRNA-1:five_prime_utr;Parent=Msa0455380-mRNA-1
chr3_3	CDS	48263679	48264803	48263679	ID=Msa0455380-mRNA-1:cds;Parent=Msa0455380-mRNA-1
chr3_3	CDS	48263549	48263582	48263549	ID=Msa0455380-mRNA-1:cds;Parent=Msa0455380-mRNA-1
chr3_3	CDS	48262118	48262197	48262118	ID=Msa0455380-mRNA-1:cds;Parent=Msa0455380-mRNA-1
chr3_3	CDS	48261879	48261938	48261879	ID=Msa0455380-mRNA-1:cds;Parent=Msa0455380-mRNA-1
chr3_3	CDS	48261555	48261662	48261555	ID=Msa0455380-mRNA-1:cds;Parent=Msa0455380-mRNA-1
chr3_3	CDS	48260989	48261066	48260989	ID=Msa0455380-mRNA-1:cds;Parent=Msa0455380-mRNA-1
chr3_3	CDS	48260788	48260868	48260788	ID=Msa0455380-mRNA-1:cds;Parent=Msa0455380-mRNA-1
chr3_3	CDS	48258540	48259014	48258540	ID=Msa0455380-mRNA-1:cds;Parent=Msa0455380-mRNA-1
chr3_3	CDS	48258293	48258402	48258293	ID=Msa0455380-mRNA-1:cds;Parent=Msa0455380-mRNA-1
chr3_3	CDS	48257763	48257933	48257763	ID=Msa0455380-mRNA-1:cds;Parent=Msa0455380-mRNA-1
chr3_3	CDS	48257491	48257521	48257491	ID=Msa0455380-mRNA-1:cds;Parent=Msa0455380-mRNA-1
chr3_3	CDS	48256893	48257038	48256893	ID=Msa0455380-mRNA-1:cds;Parent=Msa0455380-mRNA-1
chr3_3	three_prime_UTR	48256521	48256892	48256521	ID=Msa0455380-mRNA-1:three_prime_utr;Parent=Msa0455380-mRNA-1

Gene Sequence

>Msa0455380

ATGGGCAAGGAAGAAGCAGTGGCTGAAGTTTCTAAGACTGATTCAAATGGAGGTAGCGTTCCGGTGAAATCATTAGGGGAAGTTGTTGAGAAGAAAGACTTGGGAACTGATGGAGGGAAAGTCTTGGAGAGTAACGGAGTCAAAGAGGTGAAAGAAAATGATGTAAAAGAAATTGAAGAAGATAAGAAAGTTGAGGGTGTGGAAAAGGTACAAGAGGATAAGAAAGATGAAGATGGGGTGGGAGAAGTAAAAGAGGATAAGAAAGCCGATGGGGGCGATGAAGTAAAAGAGGATAAGAAAGGTGATGTGGTAGAAGTAAAAGACAAAAAGAAAGACGATGTGGTGGAAGAAGTAAAAGAGGATAAGAAAGACGATATGGTGGAAGAAGTGAAAGAGGAGAAGAAAGACGAAGGGGCTGATGAAGTAAAAGAGGAGAAGAAAGATGATGGGGTGGAAGAAGTAAAAGAGAATAAGGAAGTTGATGGTGCAGATGAAGTAAAGGTGGAAAAGAATGATAATAAGGGGGAAGAAGTAAAAGATGAGATGGAAGTTGATGGCGTGAAAGAAGCAGTGGAGGATAAGAATGACGATGACATCCAAGAAATTGAAGAGGATGACAAAAATGTTGCTGAATCTGAGAATGAGAAAATGGATGTTGATGCTGAGGTTAAGGAAACTGCAGAAGATAAAGAAGAAAAGGAAAAAGAAGATGCAGAGGGTAGTATTGAGGAGAAAGAAGAGGGTAATGATGAGGAGAAAACTGAAGTAGAGGAGAAGGAAGAAGGCGATGACAATGAGAAATCTGAAGAAGAGACAGAGGAGAAGGAAGAGGGCGATGAAAAGGAGAAAACTGAAGCAGAGACGGAGGAGGAGGAGGACGACGAGGATACTATTGATAAATCAAAAGAAGAAGATAAGGCAGAGGGTGGTAAGGCTAAGAAAGGATCAAAAAAGCGTGCCAGAGGGAAGGTTAATAAGGAGAAAGTGAAAGACAAAAAGAAGGAACTGAAGCAGCCAGAGCCAAAGACTCCAACTAGTGATCGCCCAGTCCGAGAAAGGAAATCAGTTGAGAGATTGGTAGCATTAATCGATAAAGATGCAACCAAGGAATTACACATTGCAAAGGGCCGTGGCACACCTTTAAAAGATATACCTAATGTGGCATTTAAGTTATCCAGAAGGAAGACTGATGATAGTCTCAAGTTGTTTCATACAATCCTCTTTGGAAGGAGAGGGAAGGCATTTCAGGTCAAGAGTAATATATTGAGGTTTTCTGGTTTTGTATGGCATGACAATGAGGAGAAGCAAATGCTTAAAGTAAAAGAAAAGCTAGACAGGTGTAACAAAGAGAAGTTACTGGAATTCTGCGATGTGCTTGACATAACAATTACCAAGTCAACAACAAAGGAAGATATTATTGCTAAGCTGACGGACTTTCTGGTTGCCCCTCATGCAACCACAACTGTGGTGCTTGCAGAAAAAGAGTCAAGCAAGAAGCGTAGGCGGACTGTCAAACGAGGTACACCAAGGTCTGGTGGGGCAAGTACTTCAAGAGGTTCTGGAAAGAGGCAGAAGAAAAATGAAGATTCTTCAGGAGTGGAGAAAAAGAGCACAACTGACACAGAAGATGAATCAGAGGGAGAAGAGAAAAATGAAGAAAATGAGGATGAACCTGAAAATGATATTCCTGAGAAATCTGAAGATGAAACGCCACAGAAATCTGAAAAGGAAGATAAGAGTGATCCCGGGAGTGAATCTGAAGATGTGAAAAAAAGGAAAAGACCCTCCAAAACATCATCTGCAAAGAAAGAGTCCGCTGGAAGAAGCAAAACTGAGAAAACTACGGTCACGAATAAATCTCGCTCACCACCACCTAAGAGAGCACCTAAGAAATCATCAAATACCAAACCAAAGTCCGATGATGATATGGATGAAAGTCCAAAGGTATTTTCTAGGAAGAAGAAAAGTGAGCAAGGGGGAAAGCAGAAGATATCAACTCCAACTCCAACCAAGTCTTCCTCAAAGTCCAAAGAGAAAACTGAAAAGGTTACTAAGGGAAAAGGCAAGAAGAAAGTGACGTCCTCGAATCCCACAGATGATCAGTTGCGTGATGCAATATGTGAAATTCTTAAAGAAGTTGACTTCAATACGATTTGCCACATACCAACCTTGTATTATTTTTGCCAACTATATGATGCCGTTGTAAGAAGAGTAGATCAGATGGAGGAGAGTCAGGTTAAAAGAGGTAGAGGAAGACCTAAGAAAACCATTAGAGAAACCATTCGCAAAGATTTAGAGGTCAATGAGTTGGATCCAAATACGGCCACATTTACCGACATTCTGAAACTACTCGCTAACAAATTTGATGGGGATCTCACCCCAAAAAAGTCAGCTATCAAGCTCATGATTCAGAAAGAGCTGGCAAGACTAGCTGAAGAAGCAGATGAGTCCGAGGAAGATGAAGAGGAGGATGCCGAGAAAGATGAAGACCGGTCTTAA

Protein sequence

>Msa0455380

MGKEEAVAEVSKTDSNGGSVPVKSLGEVVEKKDLGTDGGKVLESNGVKEVKENDVKEIEEDKKVEGVEKVQEDKKDEDGVGEVKEDKKADGGDEVKEDKKGDVVEVKDKKKDDVVEEVKEDKKDDMVEEVKEEKKDEGADEVKEEKKDDGVEEVKENKEVDGADEVKVEKNDNKGEEVKDEMEVDGVKEAVEDKNDDDIQEIEEDDKNVAESENEKMDVDAEVKETAEDKEEKEKEDAEGSIEEKEEGNDEEKTEVEEKEEGDDNEKSEEETEEKEEGDEKEKTEAETEEEEDDEDTIDKSKEEDKAEGGKAKKGSKKRARGKVNKEKVKDKKKELKQPEPKTPTSDRPVRERKSVERLVALIDKDATKELHIAKGRGTPLKDIPNVAFKLSRRKTDDSLKLFHTILFGRRGKAFQVKSNILRFSGFVWHDNEEKQMLKVKEKLDRCNKEKLLEFCDVLDITITKSTTKEDIIAKLTDFLVAPHATTTVVLAEKESSKKRRRTVKRGTPRSGGASTSRGSGKRQKKNEDSSGVEKKSTTDTEDESEGEEKNEENEDEPENDIPEKSEDETPQKSEKEDKSDPGSESEDVKKRKRPSKTSSAKKESAGRSKTEKTTVTNKSRSPPPKRAPKKSSNTKPKSDDDMDESPKVFSRKKKSEQGGKQKISTPTPTKSSSKSKEKTEKVTKGKGKKKVTSSNPTDDQLRDAICEILKEVDFNTICHIPTLYYFCQLYDAVVRRVDQMEESQVKRGRGRPKKTIRETIRKDLEVNELDPNTATFTDILKLLANKFDGDLTPKKSAIKLMIQKELARLAEEADESEEDEEEDAEKDEDRS*