Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0068630 | KEH16406.1 | 48.039 | 102 | 50 | 1 | 1 | 99 | 286 | 387 | 1.00e-16 | 85.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0068630 | A0A072TGW1 | 48.039 | 102 | 50 | 1 | 1 | 99 | 286 | 387 | 4.80e-17 | 85.9 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023610 | Msa0068630 | 0.863121 | 3.119708e-64 | -8.615850e-47 |
| Msa0068630 | Msa0071340 | 0.835052 | 2.100446e-56 | -8.615850e-47 |
| Msa0068630 | Msa0118050 | 0.805788 | 1.127407e-49 | -8.615850e-47 |
| Msa0068630 | Msa0153200 | 0.873644 | 1.252821e-67 | -8.615850e-47 |
| Msa0068630 | Msa0162580 | 0.876669 | 1.161910e-68 | -8.615850e-47 |
| Msa0068630 | Msa0211680 | 0.841279 | 5.231369e-58 | -8.615850e-47 |
| Msa0068630 | Msa0280450 | 0.890129 | 1.301869e-73 | -8.615850e-47 |
| Msa0068630 | Msa0291600 | 0.821006 | 5.079258e-53 | -8.615850e-47 |
| Msa0068630 | Msa0458420 | 0.837367 | 5.420131e-57 | -8.615850e-47 |
| Msa0068630 | Msa0465170 | 0.834826 | 2.394003e-56 | -8.615850e-47 |
| Msa0068630 | Msa0548060 | 0.831628 | 1.498537e-55 | -8.615850e-47 |
| Msa0068630 | Msa0675510 | 0.868827 | 4.888753e-66 | -8.615850e-47 |
| Msa0068630 | Msa0858360 | 0.802845 | 4.624426e-49 | -8.615850e-47 |
| Msa0068630 | Msa0902020 | 0.864680 | 1.021560e-64 | -8.615850e-47 |
| Msa0068630 | Msa0912370 | 0.803991 | 2.675717e-49 | -8.615850e-47 |
| Msa0068630 | Msa0951330 | 0.803038 | 4.218293e-49 | -8.615850e-47 |
| Msa0068630 | Msa0962360 | 0.871606 | 6.010815e-67 | -8.615850e-47 |
| Msa0068630 | Msa0963310 | 0.827702 | 1.352285e-54 | -8.615850e-47 |
| Msa0068630 | Msa0964180 | 0.823958 | 1.046207e-53 | -8.615850e-47 |
| Msa0068630 | Msa1048540 | 0.849034 | 4.190221e-60 | -8.615850e-47 |
| Msa0068630 | Msa1232060 | 0.865967 | 4.020458e-65 | -8.615850e-47 |
| Msa0068630 | Msa1463140 | 0.873039 | 2.001163e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 38 sgRNAs with CRISPR-Local
Find 338 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAAACAATCGAGAAGTTT+AGG | 0.314204 | 1_2:+35752632 | Msa0068630:CDS |
| TGCCACTGATGGTGCAGATT+TGG | 0.320867 | 1_2:+35751272 | Msa0068630:CDS |
| CTGATGTTCATAATGTTGAT+AGG | 0.376672 | 1_2:+35751223 | Msa0068630:CDS |
| GGCCTTGGAGGAGCCTGTTC+CGG | 0.383109 | 1_2:-35747761 | None:intergenic |
| TGTTCAGGTGATTCAGTTGT+TGG | 0.398863 | 1_2:+35752611 | Msa0068630:intron |
| AAGGACAACCCTTCCGGAAC+AGG | 0.398986 | 1_2:+35747748 | Msa0068630:CDS |
| CCCACCTACTGCGCAGCCTT+TGG | 0.403408 | 1_2:+35747792 | Msa0068630:CDS |
| GCAGAGGCCTGTAGGGAAAC+TGG | 0.410165 | 1_2:-35751189 | None:intergenic |
| GGTTTCACCAACTGTTCAAT+TGG | 0.418177 | 1_2:+35751248 | Msa0068630:CDS |
| CCGTTGAAGGACAACCCTTC+CGG | 0.442680 | 1_2:+35747742 | Msa0068630:CDS |
| ACCTACTGCGCAGCCTTTGG+TGG | 0.457889 | 1_2:+35747795 | Msa0068630:CDS |
| AGGTGGGGTTTCAAAGGCCT+TGG | 0.465142 | 1_2:-35747776 | None:intergenic |
| GAGTCTACAAGGTCAACAAT+AGG | 0.470369 | 1_2:-35751147 | None:intergenic |
| CGCAGTAGGTGGGGTTTCAA+AGG | 0.475757 | 1_2:-35747782 | None:intergenic |
| CCAAAGGCTGCGCAGTAGGT+GGG | 0.476841 | 1_2:-35747792 | None:intergenic |
| TGGGGTTTCAAAGGCCTTGG+AGG | 0.481400 | 1_2:-35747773 | None:intergenic |
| ACCAAAGGCTGCGCAGTAGG+TGG | 0.483344 | 1_2:-35747793 | None:intergenic |
| ACCTGAGTGGATGCCGTTGA+AGG | 0.483352 | 1_2:+35747729 | None:intergenic |
| CTGTACCTGCAGAGGCCTGT+AGG | 0.492903 | 1_2:-35751197 | None:intergenic |
| CACTGATGGTGCAGATTTGG+AGG | 0.503996 | 1_2:+35751275 | Msa0068630:CDS |
| TTGGAGGAGCCTGTTCCGGA+AGG | 0.504897 | 1_2:-35747757 | None:intergenic |
| CCGGAAGGGTTGTCCTTCAA+CGG | 0.505217 | 1_2:-35747742 | None:intergenic |
| CTACTGCAGTTGAGTCTACA+AGG | 0.529582 | 1_2:-35751158 | None:intergenic |
| TGTACCTGCAGAGGCCTGTA+GGG | 0.532997 | 1_2:-35751196 | None:intergenic |
| CAAAGGCTGCGCAGTAGGTG+GGG | 0.534864 | 1_2:-35747791 | None:intergenic |
| TGGAGGAGCCTGTTCCGGAA+GGG | 0.546886 | 1_2:-35747756 | None:intergenic |
| GTTCAATTGGTTGCCACTGA+TGG | 0.552511 | 1_2:+35751261 | Msa0068630:CDS |
| GTTTCCCTACAGGCCTCTGC+AGG | 0.558002 | 1_2:+35751192 | Msa0068630:CDS |
| TTCCGGAACAGGCTCCTCCA+AGG | 0.558697 | 1_2:+35747759 | Msa0068630:CDS |
| TGACACACCAGTTTCCCTAC+AGG | 0.559485 | 1_2:+35751182 | Msa0068630:CDS |
| TGATGTTCATAATGTTGATA+GGG | 0.563302 | 1_2:+35751224 | Msa0068630:CDS |
| GTGGCAACCAATTGAACAGT+TGG | 0.570795 | 1_2:-35751255 | None:intergenic |
| TGTTCATAATGTTGATAGGG+AGG | 0.593845 | 1_2:+35751227 | Msa0068630:CDS |
| GCCACCAAAGGCTGCGCAGT+AGG | 0.597832 | 1_2:-35747796 | None:intergenic |
| TTTACAAAACGTTACAGACG+AGG | 0.610486 | 1_2:+35747852 | Msa0068630:CDS |
| CTCCAAATCTGCACCATCAG+TGG | 0.612601 | 1_2:-35751274 | None:intergenic |
| ATCAACATTATGAACATCAG+CGG | 0.658478 | 1_2:-35751220 | None:intergenic |
| ATCAGCGGCTGTACCTGCAG+AGG | 0.668496 | 1_2:-35751205 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATTTTATTTAAAAAAA+AGG | - | chr1_2:35751865-35751884 | None:intergenic | 0.0% |
| !!! | TTGTTATTATGATAAATTTT+AGG | + | chr1_2:35749965-35749984 | Msa0068630:intron | 10.0% |
| !!! | TTTTATTTTATTTGAATTGA+AGG | - | chr1_2:35750732-35750751 | None:intergenic | 10.0% |
| !! | ATATTTATAACAAATTCAAA+CGG | - | chr1_2:35752032-35752051 | None:intergenic | 10.0% |
| !!! | TTTTTATGATATATTTTATC+GGG | + | chr1_2:35752202-35752221 | Msa0068630:intron | 10.0% |
| !!! | AAATTTGAACAAGTATTTTT+AGG | - | chr1_2:35747968-35747987 | None:intergenic | 15.0% |
| !!! | CAATTCAACAAAAATATTTT+CGG | + | chr1_2:35748251-35748270 | Msa0068630:intron | 15.0% |
| !!! | TGTTTTTTTTTCGTTTTTTA+TGG | + | chr1_2:35749269-35749288 | Msa0068630:intron | 15.0% |
| !! | ATTTGATTAAGAAAATGAAA+GGG | - | chr1_2:35750496-35750515 | None:intergenic | 15.0% |
| !! | AATTTGATTAAGAAAATGAA+AGG | - | chr1_2:35750497-35750516 | None:intergenic | 15.0% |
| !!! | TTGATTTTAAGTTTGAAAAT+TGG | - | chr1_2:35750626-35750645 | None:intergenic | 15.0% |
| !!! | AAAAATGTTTTTGTTTTTGT+TGG | - | chr1_2:35750649-35750668 | None:intergenic | 15.0% |
| !!! | AACAAAAACAAAAACATTTT+TGG | + | chr1_2:35750648-35750667 | Msa0068630:intron | 15.0% |
| !!! | AATAAAATTTTAGAGTTTGA+CGG | + | chr1_2:35751873-35751892 | Msa0068630:intron | 15.0% |
| !!! | TAATTACCTTAGTTTTTTTT+TGG | - | chr1_2:35751980-35751999 | None:intergenic | 15.0% |
| !! | TAATGATTTCATTGTAAAAT+TGG | + | chr1_2:35752004-35752023 | Msa0068630:intron | 15.0% |
| !! | ATTGATTATAAGGATTATAA+GGG | - | chr1_2:35752252-35752271 | None:intergenic | 15.0% |
| !! | AATTGATTATAAGGATTATA+AGG | - | chr1_2:35752253-35752272 | None:intergenic | 15.0% |
| !! | AGTATAAACAATTGATTATA+AGG | - | chr1_2:35752262-35752281 | None:intergenic | 15.0% |
| !!! | TATTTTTAGGTCCAAAATTA+GGG | - | chr1_2:35747955-35747974 | None:intergenic | 20.0% |
| !!! | TTGTTGAATTGAAAGTATTT+TGG | - | chr1_2:35748242-35748261 | None:intergenic | 20.0% |
| !!! | TGTATTTTTAAGAAAAACTG+AGG | - | chr1_2:35748643-35748662 | None:intergenic | 20.0% |
| !! | AATCTTGATAAAAAAATGTG+TGG | + | chr1_2:35749428-35749447 | Msa0068630:intron | 20.0% |
| !! | ACAAACATTTATCAAGAAAT+TGG | - | chr1_2:35749693-35749712 | None:intergenic | 20.0% |
| !! | TAAAACTTCACAAAATCATA+TGG | - | chr1_2:35749724-35749743 | None:intergenic | 20.0% |
| !! | CATGAAAATTATAAGCAAAA+AGG | - | chr1_2:35750051-35750070 | None:intergenic | 20.0% |
| !!! | ACATAGATATTTTAGATGTA+TGG | + | chr1_2:35750314-35750333 | Msa0068630:intron | 20.0% |
| !!! | TGATACTATTCAAGTTTTTT+TGG | - | chr1_2:35750423-35750442 | None:intergenic | 20.0% |
| !!! | ATCTTTTTCTAAATAAACCT+TGG | + | chr1_2:35750448-35750467 | Msa0068630:intron | 20.0% |
| !!! | TCTTTTTCTAAATAAACCTT+GGG | + | chr1_2:35750449-35750468 | Msa0068630:intron | 20.0% |
| !! | AAAAAAAATTACAAGAAGAG+GGG | - | chr1_2:35751842-35751861 | None:intergenic | 20.0% |
| !! | GAAAAAAAATTACAAGAAGA+GGG | - | chr1_2:35751843-35751862 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTTACTCAAATAC+TGG | + | chr1_2:35752357-35752376 | Msa0068630:intron | 20.0% |
| !!! | TAATTAATCTTGATTTGTTC+AGG | + | chr1_2:35752596-35752615 | Msa0068630:intron | 20.0% |
| !!! | GTATTTTTAGGTCCAAAATT+AGG | - | chr1_2:35747956-35747975 | None:intergenic | 25.0% |
| ! | AGAGTAATAGACATATATCA+AGG | - | chr1_2:35747999-35748018 | None:intergenic | 25.0% |
| !! | TGTAATGCAAGAAAAAGTTT+TGG | - | chr1_2:35748142-35748161 | None:intergenic | 25.0% |
| !! | AATTGCAGGAAGAAATTTTA+CGG | - | chr1_2:35748324-35748343 | None:intergenic | 25.0% |
| !! | GATTAGATCGAATTGAATTT+TGG | - | chr1_2:35748444-35748463 | None:intergenic | 25.0% |
| ! | AATCTATGAGGAAATTGAAA+CGG | + | chr1_2:35748523-35748542 | Msa0068630:intron | 25.0% |
| ! | ATAATGAAAGATTCAGATAG+AGG | + | chr1_2:35748870-35748889 | Msa0068630:intron | 25.0% |
| ! | AGAAAAATTTGAGTGAATAG+GGG | - | chr1_2:35749334-35749353 | None:intergenic | 25.0% |
| ! | GAGAAAAATTTGAGTGAATA+GGG | - | chr1_2:35749335-35749354 | None:intergenic | 25.0% |
| ! | AGAGAAAAATTTGAGTGAAT+AGG | - | chr1_2:35749336-35749355 | None:intergenic | 25.0% |
| !! | AGAACACATAGGAAATTTTT+AGG | - | chr1_2:35749367-35749386 | None:intergenic | 25.0% |
| ! | AAAAATTTCCTATGTGTTCT+TGG | + | chr1_2:35749367-35749386 | Msa0068630:intron | 25.0% |
| !!! | TGACATATTTTAGGCATATT+TGG | - | chr1_2:35749842-35749861 | None:intergenic | 25.0% |
| !! | CAAGAATCATGACATATTTT+AGG | - | chr1_2:35749851-35749870 | None:intergenic | 25.0% |
| ! | TTTGAACATTGTCATGATAT+GGG | + | chr1_2:35749920-35749939 | Msa0068630:intron | 25.0% |
| ! | TAGCAAAAACTTGACAAAAA+GGG | - | chr1_2:35750014-35750033 | None:intergenic | 25.0% |
| ! | GAATGAAACATGAAATGAAA+TGG | - | chr1_2:35750096-35750115 | None:intergenic | 25.0% |
| !! | TTTTTCTAAGTGTAAATCCT+AGG | - | chr1_2:35750393-35750412 | None:intergenic | 25.0% |
| ! | AATGAAAGGGAAAATACAAT+GGG | - | chr1_2:35750483-35750502 | None:intergenic | 25.0% |
| ! | AAATGAAAGGGAAAATACAA+TGG | - | chr1_2:35750484-35750503 | None:intergenic | 25.0% |
| !!! | ACATTTTTGGAAGAGAATTA+CGG | + | chr1_2:35750661-35750680 | Msa0068630:intron | 25.0% |
| !!! | GTGATATCTCATTTTTTCTT+GGG | - | chr1_2:35750968-35750987 | None:intergenic | 25.0% |
| !!! | TGTGATATCTCATTTTTTCT+TGG | - | chr1_2:35750969-35750988 | None:intergenic | 25.0% |
| ! | AAGAAAAAATGAGATATCAC+AGG | + | chr1_2:35750968-35750987 | Msa0068630:intron | 25.0% |
| ! | TGATGTTCATAATGTTGATA+GGG | + | chr1_2:35751224-35751243 | Msa0068630:CDS | 25.0% |
| ! | TAACAAAATCATTTGGAAGA+TGG | - | chr1_2:35751642-35751661 | None:intergenic | 25.0% |
| !! | TCTTCCAAATGATTTTGTTA+TGG | + | chr1_2:35751642-35751661 | Msa0068630:intron | 25.0% |
| !!! | CTTCCAAATGATTTTGTTAT+GGG | + | chr1_2:35751643-35751662 | Msa0068630:intron | 25.0% |
| ! | AATCCCATAACAAAATCATT+TGG | - | chr1_2:35751649-35751668 | None:intergenic | 25.0% |
| !!! | TTTTGTTATGGGATTCAAAT+TGG | + | chr1_2:35751654-35751673 | Msa0068630:intron | 25.0% |
| !!! | AGTTTTTTTTCCAGCATTTT+TGG | + | chr1_2:35751782-35751801 | Msa0068630:intron | 25.0% |
| ! | AAAAAAATTACAAGAAGAGG+GGG | - | chr1_2:35751841-35751860 | None:intergenic | 25.0% |
| ! | GGAAAAAAAATTACAAGAAG+AGG | - | chr1_2:35751844-35751863 | None:intergenic | 25.0% |
| !!! | TAGTTTTTTTTTGGTAAGCA+AGG | - | chr1_2:35751971-35751990 | None:intergenic | 25.0% |
| ! | TGCTTACCAAAAAAAAACTA+AGG | + | chr1_2:35751971-35751990 | Msa0068630:intron | 25.0% |
| !!! | ACTAATTTGTCTTTTCTTTC+AGG | + | chr1_2:35752058-35752077 | Msa0068630:intron | 25.0% |
| ! | TAACCTATTTAAACGAGTAT+TGG | + | chr1_2:35752118-35752137 | Msa0068630:intron | 25.0% |
| !!! | TTTTATTGATTTTGCTGTCT+TGG | + | chr1_2:35752487-35752506 | Msa0068630:intron | 25.0% |
| ! | ACTAAGAATTATGAATGACA+AGG | - | chr1_2:35752524-35752543 | None:intergenic | 25.0% |
| ! | TAATTCTTAGTAACTCTGTT+TGG | + | chr1_2:35752533-35752552 | Msa0068630:intron | 25.0% |
| !!! | ACATTATTTTTAGCCACCAA+AGG | - | chr1_2:35747811-35747830 | None:intergenic | 30.0% |
| ! | TTGTGAACTTGTGTTTGTTT+TGG | - | chr1_2:35748171-35748190 | None:intergenic | 30.0% |
| ! | AAATATTTTCGGATTCAGCA+AGG | + | chr1_2:35748262-35748281 | Msa0068630:intron | 30.0% |
| !! | AAACGTTTTCAAGAAAAACG+AGG | - | chr1_2:35748713-35748732 | None:intergenic | 30.0% |
| TTGAAAACGTTTGCAAATAG+AGG | + | chr1_2:35748721-35748740 | Msa0068630:intron | 30.0% | |
| ! | TTCCTAGATCTACACTTTTA+GGG | - | chr1_2:35748827-35748846 | None:intergenic | 30.0% |
| TCCTAAAAACCTAAATCAGA+CGG | - | chr1_2:35749172-35749191 | None:intergenic | 30.0% | |
| !!! | TGATTTAGGTTTTTAGGATC+TGG | + | chr1_2:35749174-35749193 | Msa0068630:intron | 30.0% |
| TGCATATGAATATGTGTGAT+TGG | + | chr1_2:35749769-35749788 | Msa0068630:intron | 30.0% | |
| ATATGTCATGATTCTTGACT+TGG | + | chr1_2:35749854-35749873 | Msa0068630:intron | 30.0% | |
| CTTTGAACATTGTCATGATA+TGG | + | chr1_2:35749919-35749938 | Msa0068630:intron | 30.0% | |
| GTAGCAAAAACTTGACAAAA+AGG | - | chr1_2:35750015-35750034 | None:intergenic | 30.0% | |
| ATGAAATGGTTAGTAGGATA+AGG | - | chr1_2:35750082-35750101 | None:intergenic | 30.0% | |
| CATGAAATGAAATGGTTAGT+AGG | - | chr1_2:35750088-35750107 | None:intergenic | 30.0% | |
| TATAGAAATGAAGTGAGATG+AGG | - | chr1_2:35750132-35750151 | None:intergenic | 30.0% | |
| AGTAAAGTACAAGAATTCCT+AGG | - | chr1_2:35750179-35750198 | None:intergenic | 30.0% | |
| GCATGTTTAGATGTATGTTT+AGG | + | chr1_2:35750346-35750365 | Msa0068630:intron | 30.0% | |
| !! | AATTTTGAAGAATGAGAGAG+AGG | - | chr1_2:35750603-35750622 | None:intergenic | 30.0% |
| TTACTAAGTGAAGAATTGGA+GGG | - | chr1_2:35750773-35750792 | None:intergenic | 30.0% | |
| TTTACTAAGTGAAGAATTGG+AGG | - | chr1_2:35750774-35750793 | None:intergenic | 30.0% | |
| GAGTTTACTAAGTGAAGAAT+TGG | - | chr1_2:35750777-35750796 | None:intergenic | 30.0% | |
| TCTTCACTTAGTAAACTCTT+AGG | + | chr1_2:35750779-35750798 | Msa0068630:intron | 30.0% | |
| TAACGACTATAGTATCCTAT+AGG | - | chr1_2:35750869-35750888 | None:intergenic | 30.0% | |
| TAGGATACTATAGTCGTTAT+AGG | + | chr1_2:35750870-35750889 | Msa0068630:intron | 30.0% | |
| !!! | ATCTCATTTTTTCTTGGGAA+GGG | - | chr1_2:35750963-35750982 | None:intergenic | 30.0% |
| !!! | TATCTCATTTTTTCTTGGGA+AGG | - | chr1_2:35750964-35750983 | None:intergenic | 30.0% |
| TGAGATATCACAGGTTAAAA+AGG | + | chr1_2:35750977-35750996 | Msa0068630:intron | 30.0% | |
| !! | AGCTGTTTTATCTTGGTTTT+CGG | - | chr1_2:35751028-35751047 | None:intergenic | 30.0% |
| ATCAACATTATGAACATCAG+CGG | - | chr1_2:35751223-35751242 | None:intergenic | 30.0% | |
| CTGATGTTCATAATGTTGAT+AGG | + | chr1_2:35751223-35751242 | Msa0068630:CDS | 30.0% | |
| ! | TACAGAATGGAGTTGATTTA+TGG | + | chr1_2:35751484-35751503 | Msa0068630:intron | 30.0% |
| ! | ACAGAATGGAGTTGATTTAT+GGG | + | chr1_2:35751485-35751504 | Msa0068630:intron | 30.0% |
| TTGATCATATTCACGTATTC+TGG | - | chr1_2:35751511-35751530 | None:intergenic | 30.0% | |
| TATGAATTTCGTGATAGAGT+TGG | + | chr1_2:35751726-35751745 | Msa0068630:intron | 30.0% | |
| GAAAAACAAACCAAAAATGC+TGG | - | chr1_2:35751795-35751814 | None:intergenic | 30.0% | |
| !!! | TTTGGTTTGTTTTTCTTCTG+AGG | + | chr1_2:35751800-35751819 | Msa0068630:intron | 30.0% |
| !!! | TTGGTTTGTTTTTCTTCTGA+GGG | + | chr1_2:35751801-35751820 | Msa0068630:intron | 30.0% |
| AAAAAATTACAAGAAGAGGG+GGG | - | chr1_2:35751840-35751859 | None:intergenic | 30.0% | |
| AATATCATAAAATACCCCAG+TGG | - | chr1_2:35752094-35752113 | None:intergenic | 30.0% | |
| CATCCAATACTCGTTTAAAT+AGG | - | chr1_2:35752124-35752143 | None:intergenic | 30.0% | |
| !! | TAGGTTTTTCAGTGATACTT+TGG | + | chr1_2:35752177-35752196 | Msa0068630:intron | 30.0% |
| !! | AGGTTTTTCAGTGATACTTT+GGG | + | chr1_2:35752178-35752197 | Msa0068630:intron | 30.0% |
| ! | TCGTCTGTAACGTTTTGTAA+AGG | - | chr1_2:35747853-35747872 | None:intergenic | 35.0% |
| TTTACAAAACGTTACAGACG+AGG | + | chr1_2:35747852-35747871 | Msa0068630:CDS | 35.0% | |
| ATTGTCACCAGTGTCAATAA+AGG | - | chr1_2:35747907-35747926 | None:intergenic | 35.0% | |
| ! | CTGCTGTTATACCCTAATTT+TGG | + | chr1_2:35747941-35747960 | Msa0068630:intron | 35.0% |
| ACTTGAACTGCAAGAAAACA+TGG | - | chr1_2:35748116-35748135 | None:intergenic | 35.0% | |
| AGAGAAACCTTCAACAAAAC+CGG | + | chr1_2:35748417-35748436 | Msa0068630:intron | 35.0% | |
| ! | GATCGAATTGAATTTTGGAC+CGG | - | chr1_2:35748439-35748458 | None:intergenic | 35.0% |
| GAGAGAATCTCAAATCTATG+AGG | + | chr1_2:35748511-35748530 | Msa0068630:intron | 35.0% | |
| ATGAGGAAATTGAAACGGTT+AGG | + | chr1_2:35748528-35748547 | Msa0068630:intron | 35.0% | |
| TGAGGAAATTGAAACGGTTA+GGG | + | chr1_2:35748529-35748548 | Msa0068630:intron | 35.0% | |
| TTCAGAAATCAAGAGACGAA+AGG | + | chr1_2:35748552-35748571 | Msa0068630:intron | 35.0% | |
| ACATCGTAAAACGAACATCA+AGG | + | chr1_2:35748759-35748778 | Msa0068630:intron | 35.0% | |
| !!! | AGATCTACACTTTTAGGGTT+CGG | - | chr1_2:35748822-35748841 | None:intergenic | 35.0% |
| ! | AACCCTAAAAGTGTAGATCT+AGG | + | chr1_2:35748822-35748841 | Msa0068630:intron | 35.0% |
| ! | CTTCCTAGATCTACACTTTT+AGG | - | chr1_2:35748828-35748847 | None:intergenic | 35.0% |
| AACGTAAGTTGCATGTTCAT+CGG | + | chr1_2:35748933-35748952 | Msa0068630:intron | 35.0% | |
| ! | CCTTTAAAAACACCAAAGAC+CGG | - | chr1_2:35749089-35749108 | None:intergenic | 35.0% |
| !!! | CGGTCTTTGGTGTTTTTAAA+GGG | + | chr1_2:35749087-35749106 | Msa0068630:intron | 35.0% |
| TAAAAACCTAAATCAGACGG+TGG | - | chr1_2:35749169-35749188 | None:intergenic | 35.0% | |
| !! | ACCGTCTGATTTAGGTTTTT+AGG | + | chr1_2:35749168-35749187 | Msa0068630:intron | 35.0% |
| AAAACAGTAATACAAAGCCC+AGG | - | chr1_2:35749255-35749274 | None:intergenic | 35.0% | |
| CAAGACCATAGAATGTATCT+AGG | + | chr1_2:35750221-35750240 | Msa0068630:intron | 35.0% | |
| ! | ATTGGCCTAGATACATTCTA+TGG | - | chr1_2:35750229-35750248 | None:intergenic | 35.0% |
| TATCTAGGCCAATGATGTAA+AGG | + | chr1_2:35750236-35750255 | Msa0068630:intron | 35.0% | |
| TCCATTGTCCTTTACATCAT+TGG | - | chr1_2:35750247-35750266 | None:intergenic | 35.0% | |
| ! | AATGCTTTAGATGTATGCCT+AGG | + | chr1_2:35750373-35750392 | Msa0068630:intron | 35.0% |
| CATGAGATTGAGAAAATGTG+AGG | - | chr1_2:35750571-35750590 | None:intergenic | 35.0% | |
| !! | TTTTTGGAAGAGAATTACGG+TGG | + | chr1_2:35750664-35750683 | Msa0068630:intron | 35.0% |
| GTGGATTTGATCCCTTAAAA+GGG | + | chr1_2:35750683-35750702 | Msa0068630:intron | 35.0% | |
| AAAGTAAAGACGGTTCCTAT+AGG | + | chr1_2:35750851-35750870 | Msa0068630:intron | 35.0% | |
| !! | GCTGTTTTATCTTGGTTTTC+GGG | - | chr1_2:35751027-35751046 | None:intergenic | 35.0% |
| TATTCCGATTGTTGATGTTC+CGG | + | chr1_2:35751074-35751093 | Msa0068630:intron | 35.0% | |
| ! | TACTGGTCCTCATTTTCAAT+TGG | + | chr1_2:35751101-35751120 | Msa0068630:intron | 35.0% |
| ACATGCTCCAATTGAAAATG+AGG | - | chr1_2:35751111-35751130 | None:intergenic | 35.0% | |
| ! | TGTTCATAATGTTGATAGGG+AGG | + | chr1_2:35751227-35751246 | Msa0068630:CDS | 35.0% |
| TATGAGTCATTCCTTCTTCA+CGG | - | chr1_2:35751323-35751342 | None:intergenic | 35.0% | |
| ACGTGAATATGATCAACGAA+TGG | + | chr1_2:35751515-35751534 | Msa0068630:intron | 35.0% | |
| GGATTCAAATTGGCGTATAT+GGG | + | chr1_2:35751664-35751683 | Msa0068630:intron | 35.0% | |
| !! | TGTTTTTCTTCTGAGGGTTT+TGG | + | chr1_2:35751807-35751826 | Msa0068630:intron | 35.0% |
| AAAAATTACAAGAAGAGGGG+GGG | - | chr1_2:35751839-35751858 | None:intergenic | 35.0% | |
| !!! | ATTTTAGAGTTTGACGGCAT+AGG | + | chr1_2:35751879-35751898 | Msa0068630:intron | 35.0% |
| ! | TTTTGGTAAGCAAGGAGTAA+TGG | - | chr1_2:35751963-35751982 | None:intergenic | 35.0% |
| CTTCAGATAAAAACGTGACA+AGG | - | chr1_2:35752157-35752176 | None:intergenic | 35.0% | |
| !! | GTCACGTTTTTATCTGAAGT+AGG | + | chr1_2:35752158-35752177 | Msa0068630:intron | 35.0% |
| ACTGGTGACAATTGAATCAC+AGG | + | chr1_2:35747915-35747934 | Msa0068630:intron | 40.0% | |
| !!! | TTTTGGACCGGTTTTGTTGA+AGG | - | chr1_2:35748427-35748446 | None:intergenic | 40.0% |
| TCGATCTAATCCAAAACCCT+AGG | + | chr1_2:35748453-35748472 | Msa0068630:intron | 40.0% | |
| CGATCTAATCCAAAACCCTA+GGG | + | chr1_2:35748454-35748473 | Msa0068630:intron | 40.0% | |
| ! | GTACTTGATTCGAAACCCTA+GGG | - | chr1_2:35748472-35748491 | None:intergenic | 40.0% |
| CTCACTGTTGTTCTTCGATT+TGG | - | chr1_2:35748494-35748513 | None:intergenic | 40.0% | |
| CCTGTTGACGATTGGAAAAA+GGG | - | chr1_2:35748604-35748623 | None:intergenic | 40.0% | |
| ACCTGTTGACGATTGGAAAA+AGG | - | chr1_2:35748605-35748624 | None:intergenic | 40.0% | |
| ACGTTTGCAAATAGAGGAAG+AGG | + | chr1_2:35748727-35748746 | Msa0068630:intron | 40.0% | |
| !!! | CCGGTCTTTGGTGTTTTTAA+AGG | + | chr1_2:35749086-35749105 | Msa0068630:intron | 40.0% |
| TGGATCATCCAAACGTATCA+GGG | - | chr1_2:35749213-35749232 | None:intergenic | 40.0% | |
| GAAAGTGACCAAGAACACAT+AGG | - | chr1_2:35749378-35749397 | None:intergenic | 40.0% | |
| GAACATTGTCATGATATGGG+AGG | + | chr1_2:35749923-35749942 | Msa0068630:intron | 40.0% | |
| ! | TGTCATGATATGGGAGGTAT+AGG | + | chr1_2:35749929-35749948 | Msa0068630:intron | 40.0% |
| AGACTTAGTATGTGAAGCCT+AGG | + | chr1_2:35750159-35750178 | Msa0068630:intron | 40.0% | |
| GCCAATGATGTAAAGGACAA+TGG | + | chr1_2:35750243-35750262 | Msa0068630:intron | 40.0% | |
| !! | ACAATGGGATTTTGATCCCA+AGG | - | chr1_2:35750468-35750487 | None:intergenic | 40.0% |
| GAGATTGAGAAAATGTGAGG+TGG | - | chr1_2:35750568-35750587 | None:intergenic | 40.0% | |
| ! | GGTGGATTTGATCCCTTAAA+AGG | + | chr1_2:35750682-35750701 | Msa0068630:intron | 40.0% |
| ! | TTGCCTACGTACCCTTTTAA+GGG | - | chr1_2:35750697-35750716 | None:intergenic | 40.0% |
| !! | GTATGGCAGCTGTTTTATCT+TGG | - | chr1_2:35751035-35751054 | None:intergenic | 40.0% |
| GAGTCTACAAGGTCAACAAT+AGG | - | chr1_2:35751150-35751169 | None:intergenic | 40.0% | |
| GGTTTCACCAACTGTTCAAT+TGG | + | chr1_2:35751248-35751267 | Msa0068630:CDS | 40.0% | |
| TCCTTCTTCACGGACAATTA+CGG | - | chr1_2:35751313-35751332 | None:intergenic | 40.0% | |
| TTCAGCATGACCTTGATCTT+TGG | + | chr1_2:35751355-35751374 | Msa0068630:intron | 40.0% | |
| ! | GATATTGTTTGCTGCGTGTT+GGG | - | chr1_2:35751397-35751416 | None:intergenic | 40.0% |
| AGCAAACAATATCGCAGATG+AGG | + | chr1_2:35751404-35751423 | Msa0068630:intron | 40.0% | |
| GTTAGCACGAACATACAGAA+TGG | + | chr1_2:35751471-35751490 | Msa0068630:intron | 40.0% | |
| ATATGATCAACGAATGGCTG+AGG | + | chr1_2:35751521-35751540 | Msa0068630:intron | 40.0% | |
| CTTCACTCAAGTTCTTACCA+AGG | + | chr1_2:35751548-35751567 | Msa0068630:intron | 40.0% | |
| GCAGAAGCAAACTCGTAAAA+AGG | + | chr1_2:35751572-35751591 | Msa0068630:intron | 40.0% | |
| ACTCGTAAAAAGGTAGTCCT+TGG | + | chr1_2:35751582-35751601 | Msa0068630:intron | 40.0% | |
| GGGATTCAAATTGGCGTATA+TGG | + | chr1_2:35751663-35751682 | Msa0068630:intron | 40.0% | |
| AAATTGGCGTATATGGGTCA+TGG | + | chr1_2:35751670-35751689 | Msa0068630:intron | 40.0% | |
| AATTGGCGTATATGGGTCAT+GGG | + | chr1_2:35751671-35751690 | Msa0068630:intron | 40.0% | |
| ATATGCAACTGACAATCAGC+AGG | - | chr1_2:35751709-35751728 | None:intergenic | 40.0% | |
| AAAACACCGACATACCAACT+AGG | - | chr1_2:35751927-35751946 | None:intergenic | 40.0% | |
| !! | TTCAGGTTCTAAGTTTCCAC+TGG | + | chr1_2:35752075-35752094 | Msa0068630:intron | 40.0% |
| !! | TCAGGTTCTAAGTTTCCACT+GGG | + | chr1_2:35752076-35752095 | Msa0068630:intron | 40.0% |
| !! | CGAGTATTGGATGTTCTCTT+AGG | + | chr1_2:35752131-35752150 | Msa0068630:intron | 40.0% |
| TGTTCAGGTGATTCAGTTGT+TGG | + | chr1_2:35752611-35752630 | Msa0068630:intron | 40.0% | |
| ! | TCAACGTGATTTGCATTCCG+CGG | + | chr1_2:35747879-35747898 | Msa0068630:intron | 45.0% |
| CAGTGTCAATAAAGGAACCG+CGG | - | chr1_2:35747899-35747918 | None:intergenic | 45.0% | |
| TCTTCCTGCAATTCAAGCGA+AGG | + | chr1_2:35748331-35748350 | Msa0068630:intron | 45.0% | |
| ! | GATTCGAAACCCTAGGGTTT+TGG | - | chr1_2:35748466-35748485 | None:intergenic | 45.0% |
| ! | GGTACTTGATTCGAAACCCT+AGG | - | chr1_2:35748473-35748492 | None:intergenic | 45.0% |
| TGGAAAAAGGGAGAAGACGA+TGG | - | chr1_2:35748592-35748611 | None:intergenic | 45.0% | |
| ! | CCCTTTTTCCAATCGTCAAC+AGG | + | chr1_2:35748601-35748620 | Msa0068630:intron | 45.0% |
| CGTGTTTACCTGTTGACGAT+TGG | - | chr1_2:35748612-35748631 | None:intergenic | 45.0% | |
| GAAGTCAGATCGAGGTGAAT+CGG | + | chr1_2:35748668-35748687 | Msa0068630:intron | 45.0% | |
| TGCAAATAGAGGAAGAGGTG+AGG | + | chr1_2:35748732-35748751 | Msa0068630:intron | 45.0% | |
| GTTGCATGTTCATCGGAATC+TGG | + | chr1_2:35748940-35748959 | Msa0068630:intron | 45.0% | |
| TCATCGGAATCTGGAGACTA+CGG | + | chr1_2:35748949-35748968 | Msa0068630:intron | 45.0% | |
| GAGAAGAGAGAAGTGAGTTG+TGG | + | chr1_2:35749062-35749081 | Msa0068630:intron | 45.0% | |
| AAATCAGACGGTGGCTATCA+AGG | - | chr1_2:35749160-35749179 | None:intergenic | 45.0% | |
| TGATAGCCACCGTCTGATTT+AGG | + | chr1_2:35749160-35749179 | Msa0068630:intron | 45.0% | |
| TCCAACATCCCTGATACGTT+TGG | + | chr1_2:35749202-35749221 | Msa0068630:intron | 45.0% | |
| TCCAAACGTATCAGGGATGT+TGG | - | chr1_2:35749206-35749225 | None:intergenic | 45.0% | |
| CTGGATCATCCAAACGTATC+AGG | - | chr1_2:35749214-35749233 | None:intergenic | 45.0% | |
| GCACAAGGGAATATGGATTC+TGG | - | chr1_2:35749233-35749252 | None:intergenic | 45.0% | |
| AATCCATATTCCCTTGTGCC+TGG | + | chr1_2:35749234-35749253 | Msa0068630:intron | 45.0% | |
| ATCCATATTCCCTTGTGCCT+GGG | + | chr1_2:35749235-35749254 | Msa0068630:intron | 45.0% | |
| AATACAAAGCCCAGGCACAA+GGG | - | chr1_2:35749247-35749266 | None:intergenic | 45.0% | |
| TAATACAAAGCCCAGGCACA+AGG | - | chr1_2:35749248-35749267 | None:intergenic | 45.0% | |
| ! | GGCGTAAAAAGCATGTCACA+TGG | - | chr1_2:35749313-35749332 | None:intergenic | 45.0% |
| TGTGATGTGTGTGCATGTGT+CGG | - | chr1_2:35750297-35750316 | None:intergenic | 45.0% | |
| TTCTCAATCTCATGCCCTTG+AGG | + | chr1_2:35750577-35750596 | Msa0068630:intron | 45.0% | |
| ! | GATCCCTTAAAAGGGTACGT+AGG | + | chr1_2:35750691-35750710 | Msa0068630:intron | 45.0% |
| ! | CTTGCCTACGTACCCTTTTA+AGG | - | chr1_2:35750698-35750717 | None:intergenic | 45.0% |
| ! | CTTAAAAGGGTACGTAGGCA+AGG | + | chr1_2:35750696-35750715 | Msa0068630:intron | 45.0% |
| !! | TTCGGGAGTTGTTTTCGCTA+CGG | - | chr1_2:35750910-35750929 | None:intergenic | 45.0% |
| AACCCTTGAGAATCGAGGTT+CGG | - | chr1_2:35750928-35750947 | None:intergenic | 45.0% | |
| AGCAAAACCCTTGAGAATCG+AGG | - | chr1_2:35750933-35750952 | None:intergenic | 45.0% | |
| TAAAACAGCTGCCATACCTC+CGG | + | chr1_2:35751038-35751057 | Msa0068630:intron | 45.0% | |
| GGAATAGAGATGTTCCCTTC+CGG | - | chr1_2:35751060-35751079 | None:intergenic | 45.0% | |
| GCAACCGGAACATCAACAAT+CGG | - | chr1_2:35751081-35751100 | None:intergenic | 45.0% | |
| AAATGAGGACCAGTAGCAAC+CGG | - | chr1_2:35751096-35751115 | None:intergenic | 45.0% | |
| ATTGGAGCATGTTCATGTGC+AGG | + | chr1_2:35751119-35751138 | Msa0068630:intron | 45.0% | |
| CTACTGCAGTTGAGTCTACA+AGG | - | chr1_2:35751161-35751180 | None:intergenic | 45.0% | |
| GTGGCAACCAATTGAACAGT+TGG | - | chr1_2:35751258-35751277 | None:intergenic | 45.0% | |
| GTTCAATTGGTTGCCACTGA+TGG | + | chr1_2:35751261-35751280 | Msa0068630:CDS | 45.0% | |
| CCTTCTTCACGGACAATTAC+GGG | - | chr1_2:35751312-35751331 | None:intergenic | 45.0% | |
| TCAAGGTCATGCTGAATACG+AGG | - | chr1_2:35751351-35751370 | None:intergenic | 45.0% | |
| ATGGACAGTGCCAAAGATCA+AGG | - | chr1_2:35751368-35751387 | None:intergenic | 45.0% | |
| ! | CGATATTGTTTGCTGCGTGT+TGG | - | chr1_2:35751398-35751417 | None:intergenic | 45.0% |
| TAACATGTTGCTGTACGGGA+GGG | - | chr1_2:35751455-35751474 | None:intergenic | 45.0% | |
| GTGCTAACATGTTGCTGTAC+GGG | - | chr1_2:35751459-35751478 | None:intergenic | 45.0% | |
| CGTGCTAACATGTTGCTGTA+CGG | - | chr1_2:35751460-35751479 | None:intergenic | 45.0% | |
| ! | TACCAACTAGGTTGGCATCT+GGG | - | chr1_2:35751915-35751934 | None:intergenic | 45.0% |
| ! | ATACCAACTAGGTTGGCATC+TGG | - | chr1_2:35751916-35751935 | None:intergenic | 45.0% |
| ! | TGCCAACCTAGTTGGTATGT+CGG | + | chr1_2:35751918-35751937 | Msa0068630:intron | 45.0% |
| AAGGAGTAATGGCAGACATC+GGG | - | chr1_2:35751952-35751971 | None:intergenic | 45.0% | |
| CAAGGAGTAATGGCAGACAT+CGG | - | chr1_2:35751953-35751972 | None:intergenic | 45.0% | |
| !! | CAGGTTCTAAGTTTCCACTG+GGG | + | chr1_2:35752077-35752096 | Msa0068630:intron | 45.0% |
| !!! | ATTTTTTTAGAATTTTTAAA+GGG | - | chr1_2:35749526-35749545 | None:intergenic | 5.0% |
| !!! | AATTTTTTTAGAATTTTTAA+AGG | - | chr1_2:35749527-35749546 | None:intergenic | 5.0% |
| !!! | TTTTTTATGATATATTTTAT+CGG | + | chr1_2:35752201-35752220 | Msa0068630:intron | 5.0% |
| GCGGAATGCAAATCACGTTG+AGG | - | chr1_2:35747880-35747899 | None:intergenic | 50.0% | |
| CGCGGTTCCTTTATTGACAC+TGG | + | chr1_2:35747897-35747916 | Msa0068630:intron | 50.0% | |
| GCATCCTTCGCTTGAATTGC+AGG | - | chr1_2:35748338-35748357 | None:intergenic | 50.0% | |
| CGAAGGATGCGATCACAGAA+AGG | + | chr1_2:35748348-35748367 | Msa0068630:intron | 50.0% | |
| ACATCAGCGAAGTCAGATCG+AGG | + | chr1_2:35748660-35748679 | Msa0068630:intron | 50.0% | |
| CGGAGAGGATGAAGACTGAT+CGG | - | chr1_2:35748992-35749011 | None:intergenic | 50.0% | |
| ! | CTCTCTAAGAGCTCTGCAAC+TGG | - | chr1_2:35749020-35749039 | None:intergenic | 50.0% |
| GAGAGAAGTGAGTTGTGGAC+CGG | + | chr1_2:35749067-35749086 | Msa0068630:intron | 50.0% | |
| TAAAGGGACGTGAACCAGAC+CGG | + | chr1_2:35749103-35749122 | Msa0068630:intron | 50.0% | |
| ! | GGAGGTATAGGTCATGCACT+TGG | + | chr1_2:35749941-35749960 | Msa0068630:intron | 50.0% |
| GAATGAGAGAGAGGCCTCAA+GGG | - | chr1_2:35750594-35750613 | None:intergenic | 50.0% | |
| AGAATGAGAGAGAGGCCTCA+AGG | - | chr1_2:35750595-35750614 | None:intergenic | 50.0% | |
| GCGCGCGTAGAAAGTAAAGA+CGG | + | chr1_2:35750841-35750860 | Msa0068630:intron | 50.0% | |
| !! | TTTCGCTACGGGAAGGTGTT+AGG | - | chr1_2:35750898-35750917 | None:intergenic | 50.0% |
| !! | GAGTTGTTTTCGCTACGGGA+AGG | - | chr1_2:35750905-35750924 | None:intergenic | 50.0% |
| !! | TCGGGAGTTGTTTTCGCTAC+GGG | - | chr1_2:35750909-35750928 | None:intergenic | 50.0% |
| TCCCGAACCTCGATTCTCAA+GGG | + | chr1_2:35750923-35750942 | Msa0068630:intron | 50.0% | |
| ACCCTTGAGAATCGAGGTTC+GGG | - | chr1_2:35750927-35750946 | None:intergenic | 50.0% | |
| ATAGAGATGTTCCCTTCCGG+AGG | - | chr1_2:35751057-35751076 | None:intergenic | 50.0% | |
| GTTGATGTTCCGGTTGCTAC+TGG | + | chr1_2:35751084-35751103 | Msa0068630:intron | 50.0% | |
| TGACACACCAGTTTCCCTAC+AGG | + | chr1_2:35751182-35751201 | Msa0068630:CDS | 50.0% | |
| ! | TGCCACTGATGGTGCAGATT+TGG | + | chr1_2:35751272-35751291 | Msa0068630:CDS | 50.0% |
| CTCCAAATCTGCACCATCAG+TGG | - | chr1_2:35751277-35751296 | None:intergenic | 50.0% | |
| ! | CACTGATGGTGCAGATTTGG+AGG | + | chr1_2:35751275-35751294 | Msa0068630:CDS | 50.0% |
| CCCGTAATTGTCCGTGAAGA+AGG | + | chr1_2:35751309-35751328 | Msa0068630:intron | 50.0% | |
| GCTGCGTGTTGGGATAAAGA+TGG | - | chr1_2:35751387-35751406 | None:intergenic | 50.0% | |
| CAATATCGCAGATGAGGCAG+AGG | + | chr1_2:35751410-35751429 | Msa0068630:intron | 50.0% | |
| CTAACATGTTGCTGTACGGG+AGG | - | chr1_2:35751456-35751475 | None:intergenic | 50.0% | |
| GATCAACGAATGGCTGAGGA+AGG | + | chr1_2:35751525-35751544 | Msa0068630:intron | 50.0% | |
| ATCCTACCAAACCCGTGCAA+AGG | + | chr1_2:35751608-35751627 | Msa0068630:intron | 50.0% | |
| TCCTACCAAACCCGTGCAAA+GGG | + | chr1_2:35751609-35751628 | Msa0068630:intron | 50.0% | |
| ATGGAAGACCACCCTTTGCA+CGG | - | chr1_2:35751623-35751642 | None:intergenic | 50.0% | |
| AGTTTGACGGCATAGGACGA+AGG | + | chr1_2:35751886-35751905 | Msa0068630:intron | 50.0% | |
| TTCCCAGATGCCAACCTAGT+TGG | + | chr1_2:35751910-35751929 | Msa0068630:intron | 50.0% | |
| CACCGACATACCAACTAGGT+TGG | - | chr1_2:35751923-35751942 | None:intergenic | 50.0% | |
| CCGGAAGGGTTGTCCTTCAA+CGG | - | chr1_2:35747745-35747764 | None:intergenic | 55.0% | |
| CCGTTGAAGGACAACCCTTC+CGG | + | chr1_2:35747742-35747761 | Msa0068630:CDS | 55.0% | |
| AAGGACAACCCTTCCGGAAC+AGG | + | chr1_2:35747748-35747767 | Msa0068630:CDS | 55.0% | |
| TGGGGTTTCAAAGGCCTTGG+AGG | - | chr1_2:35747776-35747795 | None:intergenic | 55.0% | |
| AGGTGGGGTTTCAAAGGCCT+TGG | - | chr1_2:35747779-35747798 | None:intergenic | 55.0% | |
| CGCAGTAGGTGGGGTTTCAA+AGG | - | chr1_2:35747785-35747804 | None:intergenic | 55.0% | |
| TCGGAATCTGGAGACTACGG+CGG | + | chr1_2:35748952-35748971 | Msa0068630:intron | 55.0% | |
| GTGAGTTGTGGACCGGTCTT+TGG | + | chr1_2:35749074-35749093 | Msa0068630:intron | 55.0% | |
| ! | CCAGACTGGTTCAGGTGAAC+CGG | - | chr1_2:35749125-35749144 | None:intergenic | 55.0% |
| ! | GGAGTGAACCAGACTGGTTC+AGG | - | chr1_2:35749133-35749152 | None:intergenic | 55.0% |
| ! | GAACCAGTCTGGTTCACTCC+TGG | + | chr1_2:35749133-35749152 | Msa0068630:intron | 55.0% |
| AGCCCAGGCACAAGGGAATA+TGG | - | chr1_2:35749240-35749259 | None:intergenic | 55.0% | |
| ! | GCATGTGTCGGTGCTTGTGT+TGG | - | chr1_2:35750285-35750304 | None:intergenic | 55.0% |
| CTCCCGAACCTCGATTCTCA+AGG | + | chr1_2:35750922-35750941 | Msa0068630:intron | 55.0% | |
| GATGTTCCCTTCCGGAGGTA+TGG | - | chr1_2:35751052-35751071 | None:intergenic | 55.0% | |
| GGAGCATGTTCATGTGCAGG+AGG | + | chr1_2:35751122-35751141 | Msa0068630:intron | 55.0% | |
| TGTACCTGCAGAGGCCTGTA+GGG | - | chr1_2:35751199-35751218 | None:intergenic | 55.0% | |
| ! | ACGAGTTTGCTTCTGCGCCT+TGG | - | chr1_2:35751568-35751587 | None:intergenic | 55.0% |
| ! | GGGTTTGGTAGGATGTGCCA+AGG | - | chr1_2:35751602-35751621 | None:intergenic | 55.0% |
| ! | ACCCTTTGCACGGGTTTGGT+AGG | - | chr1_2:35751613-35751632 | None:intergenic | 55.0% |
| TACCAAACCCGTGCAAAGGG+TGG | + | chr1_2:35751612-35751631 | Msa0068630:intron | 55.0% | |
| TGGAAGACCACCCTTTGCAC+GGG | - | chr1_2:35751622-35751641 | None:intergenic | 55.0% | |
| TACAAGAAGAGGGGGGGACT+AGG | - | chr1_2:35751833-35751852 | None:intergenic | 55.0% | |
| TGGAGGAGCCTGTTCCGGAA+GGG | - | chr1_2:35747759-35747778 | None:intergenic | 60.0% | |
| TTGGAGGAGCCTGTTCCGGA+AGG | - | chr1_2:35747760-35747779 | None:intergenic | 60.0% | |
| TTCCGGAACAGGCTCCTCCA+AGG | + | chr1_2:35747759-35747778 | Msa0068630:CDS | 60.0% | |
| CAAAGGCTGCGCAGTAGGTG+GGG | - | chr1_2:35747794-35747813 | None:intergenic | 60.0% | |
| CCAAAGGCTGCGCAGTAGGT+GGG | - | chr1_2:35747795-35747814 | None:intergenic | 60.0% | |
| ACCAAAGGCTGCGCAGTAGG+TGG | - | chr1_2:35747796-35747815 | None:intergenic | 60.0% | |
| ACCTACTGCGCAGCCTTTGG+TGG | + | chr1_2:35747795-35747814 | Msa0068630:CDS | 60.0% | |
| !! | GAGCTCTGCAACTGGCTCGT+CGG | - | chr1_2:35749012-35749031 | None:intergenic | 60.0% |
| CTGGTTCAGGTGAACCGGTC+TGG | - | chr1_2:35749120-35749139 | None:intergenic | 60.0% | |
| CCGGTTCACCTGAACCAGTC+TGG | + | chr1_2:35749122-35749141 | Msa0068630:intron | 60.0% | |
| GGTCCAGGAGTGAACCAGAC+TGG | - | chr1_2:35749139-35749158 | None:intergenic | 60.0% | |
| GACGGTGGCTATCAAGGTCC+AGG | - | chr1_2:35749154-35749173 | None:intergenic | 60.0% | |
| ACAGCTGCCATACCTCCGGA+AGG | + | chr1_2:35751042-35751061 | Msa0068630:intron | 60.0% | |
| CAGCTGCCATACCTCCGGAA+GGG | + | chr1_2:35751043-35751062 | Msa0068630:intron | 60.0% | |
| GCAGAGGCCTGTAGGGAAAC+TGG | - | chr1_2:35751192-35751211 | None:intergenic | 60.0% | |
| GTTTCCCTACAGGCCTCTGC+AGG | + | chr1_2:35751192-35751211 | Msa0068630:CDS | 60.0% | |
| CTGTACCTGCAGAGGCCTGT+AGG | - | chr1_2:35751200-35751219 | None:intergenic | 60.0% | |
| ATCAGCGGCTGTACCTGCAG+AGG | - | chr1_2:35751208-35751227 | None:intergenic | 60.0% | |
| GACCACCCTTTGCACGGGTT+TGG | - | chr1_2:35751617-35751636 | None:intergenic | 60.0% | |
| GGCCTTGGAGGAGCCTGTTC+CGG | - | chr1_2:35747764-35747783 | None:intergenic | 65.0% | |
| CCCACCTACTGCGCAGCCTT+TGG | + | chr1_2:35747792-35747811 | Msa0068630:CDS | 65.0% | |
| GCCACCAAAGGCTGCGCAGT+AGG | - | chr1_2:35747799-35747818 | None:intergenic | 65.0% | |
| !! | CTGCAACTGGCTCGTCGGAG+AGG | - | chr1_2:35749007-35749026 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 35747739 | 35752653 | 35747739 | ID=Msa0068630;Name=Msa0068630 |
| chr1_2 | mRNA | 35747739 | 35752653 | 35747739 | ID=Msa0068630-mRNA-1;Parent=Msa0068630;Name=Msa0068630-mRNA-1;_AED=0.41;_eAED=0.44;_QI=0|0|0|0.66|1|1|3|0|113 |
| chr1_2 | exon | 35747739 | 35747873 | 35747739 | ID=Msa0068630-mRNA-1:exon:11349;Parent=Msa0068630-mRNA-1 |
| chr1_2 | exon | 35751141 | 35751311 | 35751141 | ID=Msa0068630-mRNA-1:exon:11350;Parent=Msa0068630-mRNA-1 |
| chr1_2 | exon | 35752618 | 35752653 | 35752618 | ID=Msa0068630-mRNA-1:exon:11351;Parent=Msa0068630-mRNA-1 |
| chr1_2 | CDS | 35747739 | 35747873 | 35747739 | ID=Msa0068630-mRNA-1:cds;Parent=Msa0068630-mRNA-1 |
| chr1_2 | CDS | 35751141 | 35751311 | 35751141 | ID=Msa0068630-mRNA-1:cds;Parent=Msa0068630-mRNA-1 |
| chr1_2 | CDS | 35752618 | 35752653 | 35752618 | ID=Msa0068630-mRNA-1:cds;Parent=Msa0068630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
