Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145750 | XP_003606905.1 | 94.872 | 39 | 2 | 0 | 1 | 39 | 1 | 39 | 2.01e-15 | 73.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145750 | G7JG62 | 94.872 | 39 | 2 | 0 | 1 | 39 | 1 | 39 | 9.62e-16 | 73.2 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013750 | Msa0145750 | 0.838365 | 3.002577e-57 | -8.615850e-47 |
| Msa0015750 | Msa0145750 | 0.818053 | 2.395977e-52 | -8.615850e-47 |
| Msa0016570 | Msa0145750 | 0.814072 | 1.855985e-51 | -8.615850e-47 |
| Msa0016580 | Msa0145750 | 0.800873 | 1.175096e-48 | -8.615850e-47 |
| Msa0092630 | Msa0145750 | 0.802308 | 5.966138e-49 | -8.615850e-47 |
| Msa0102070 | Msa0145750 | 0.844338 | 8.044511e-59 | -8.615850e-47 |
| Msa0111510 | Msa0145750 | 0.820906 | 5.354681e-53 | -8.615850e-47 |
| Msa0123810 | Msa0145750 | 0.807955 | 3.925114e-50 | -8.615850e-47 |
| Msa0124150 | Msa0145750 | 0.812152 | 4.894057e-51 | -8.615850e-47 |
| Msa0145750 | Msa0153910 | 0.809621 | 1.728890e-50 | -8.615850e-47 |
| Msa0145750 | Msa0192970 | 0.807461 | 4.997667e-50 | -8.615850e-47 |
| Msa0145750 | Msa0200000 | 0.836968 | 6.857248e-57 | -8.615850e-47 |
| Msa0145750 | Msa0227480 | 0.828435 | 9.004292e-55 | -8.615850e-47 |
| Msa0145750 | Msa0232850 | 0.849968 | 2.299607e-60 | -8.615850e-47 |
| Msa0145750 | Msa0235140 | 0.827866 | 1.234599e-54 | -8.615850e-47 |
| Msa0145750 | Msa0256440 | 0.832194 | 1.086284e-55 | -8.615850e-47 |
| Msa0145750 | Msa0267000 | 0.876330 | 1.521245e-68 | -8.615850e-47 |
| Msa0145750 | Msa0267010 | 0.883618 | 3.852462e-71 | -8.615850e-47 |
| Msa0145750 | Msa0270520 | 0.813330 | 2.702862e-51 | -8.615850e-47 |
| Msa0145750 | Msa0304170 | 0.818278 | 2.130670e-52 | -8.615850e-47 |
| Msa0145750 | Msa0306460 | 0.803417 | 3.521868e-49 | -8.615850e-47 |
| Msa0145750 | Msa0313760 | 0.837760 | 4.298117e-57 | -8.615850e-47 |
| Msa0145750 | Msa0342240 | 0.870248 | 1.684596e-66 | -8.615850e-47 |
| Msa0145750 | Msa0353190 | 0.811427 | 7.040858e-51 | -8.615850e-47 |
| Msa0145750 | Msa0360510 | 0.839521 | 1.507341e-57 | -8.615850e-47 |
| Msa0145750 | Msa0363300 | 0.808254 | 3.390213e-50 | -8.615850e-47 |
| Msa0145750 | Msa0365500 | 0.838283 | 3.152906e-57 | -8.615850e-47 |
| Msa0145750 | Msa0366580 | 0.823140 | 1.625689e-53 | -8.615850e-47 |
| Msa0145750 | Msa0384800 | 0.868590 | 5.830505e-66 | -8.615850e-47 |
| Msa0145750 | Msa0394970 | 0.800087 | 1.699163e-48 | -8.615850e-47 |
| Msa0145750 | Msa0406120 | 0.867957 | 9.325230e-66 | -8.615850e-47 |
| Msa0145750 | Msa0406280 | 0.816307 | 5.917296e-52 | -8.615850e-47 |
| Msa0145750 | Msa0414410 | 0.850885 | 1.271255e-60 | -8.615850e-47 |
| Msa0145750 | Msa0414420 | 0.899415 | 2.027243e-77 | -8.615850e-47 |
| Msa0145750 | Msa0436780 | 0.803691 | 3.089710e-49 | -8.615850e-47 |
| Msa0145750 | Msa0438620 | 0.829586 | 4.739263e-55 | -8.615850e-47 |
| Msa0145750 | Msa0450000 | 0.826507 | 2.611557e-54 | -8.615850e-47 |
| Msa0145750 | Msa0450570 | 0.807156 | 5.799639e-50 | -8.615850e-47 |
| Msa0145750 | Msa0451730 | 0.827312 | 1.677399e-54 | -8.615850e-47 |
| Msa0145750 | Msa0452900 | 0.883176 | 5.597889e-71 | -8.615850e-47 |
| Msa0145750 | Msa0452910 | 0.803994 | 2.672587e-49 | -8.615850e-47 |
| Msa0145750 | Msa0453120 | 0.817379 | 3.399148e-52 | -8.615850e-47 |
| Msa0145750 | Msa0454370 | 0.810471 | 1.133713e-50 | -8.615850e-47 |
| Msa0145750 | Msa0454910 | 0.862933 | 3.566339e-64 | -8.615850e-47 |
| Msa0145750 | Msa0456200 | 0.800999 | 1.107390e-48 | -8.615850e-47 |
| Msa0145750 | Msa0458420 | 0.821536 | 3.832708e-53 | -8.615850e-47 |
| Msa0145750 | Msa0459160 | 0.831193 | 1.917444e-55 | -8.615850e-47 |
| Msa0145750 | Msa0459170 | 0.805786 | 1.128482e-49 | -8.615850e-47 |
| Msa0145750 | Msa0482620 | 0.803195 | 3.914314e-49 | -8.615850e-47 |
| Msa0145750 | Msa0485030 | 0.823025 | 1.729012e-53 | -8.615850e-47 |
| Msa0145750 | Msa0491590 | 0.845761 | 3.320088e-59 | -8.615850e-47 |
| Msa0145750 | Msa0502760 | 0.831187 | 1.924696e-55 | -8.615850e-47 |
| Msa0145750 | Msa0506270 | 0.805741 | 1.153299e-49 | -8.615850e-47 |
| Msa0145750 | Msa0548060 | 0.825109 | 5.607351e-54 | -8.615850e-47 |
| Msa0145750 | Msa0564890 | 0.879647 | 1.050339e-69 | -8.615850e-47 |
| Msa0145750 | Msa0596150 | 0.808241 | 3.411695e-50 | -8.615850e-47 |
| Msa0145750 | Msa0604350 | 0.813366 | 2.654426e-51 | -8.615850e-47 |
| Msa0145750 | Msa0627410 | 0.804836 | 1.783824e-49 | -8.615850e-47 |
| Msa0145750 | Msa0636170 | 0.836816 | 7.498204e-57 | -8.615850e-47 |
| Msa0145750 | Msa0639610 | 0.805357 | 1.388288e-49 | -8.615850e-47 |
| Msa0145750 | Msa0678930 | 0.812822 | 3.494190e-51 | -8.615850e-47 |
| Msa0145750 | Msa0694370 | 0.816382 | 5.690882e-52 | -8.615850e-47 |
| Msa0145750 | Msa0725850 | 0.805744 | 1.151586e-49 | -8.615850e-47 |
| Msa0145750 | Msa0726140 | 0.885480 | 7.842604e-72 | -8.615850e-47 |
| Msa0145750 | Msa0729800 | 0.847188 | 1.353949e-59 | -8.615850e-47 |
| Msa0145750 | Msa0732310 | 0.818057 | 2.390812e-52 | -8.615850e-47 |
| Msa0145750 | Msa0732710 | 0.800781 | 1.226544e-48 | -8.615850e-47 |
| Msa0145750 | Msa0733290 | 0.849094 | 4.030432e-60 | -8.615850e-47 |
| Msa0145750 | Msa0735080 | 0.822489 | 2.304789e-53 | -8.615850e-47 |
| Msa0145750 | Msa0743810 | 0.890021 | 1.435687e-73 | -8.615850e-47 |
| Msa0145750 | Msa0745060 | 0.886644 | 2.857628e-72 | -8.615850e-47 |
| Msa0145750 | Msa0767720 | 0.812699 | 3.717716e-51 | -8.615850e-47 |
| Msa0145750 | Msa0775600 | 0.810148 | 1.330945e-50 | -8.615850e-47 |
| Msa0145750 | Msa0777870 | 0.848329 | 6.569944e-60 | -8.615850e-47 |
| Msa0145750 | Msa0783160 | 0.868659 | 5.540814e-66 | -8.615850e-47 |
| Msa0145750 | Msa0784290 | 0.806891 | 6.598681e-50 | -8.615850e-47 |
| Msa0145750 | Msa0787600 | 0.845046 | 5.182789e-59 | -8.615850e-47 |
| Msa0145750 | Msa0808010 | 0.846120 | 2.651855e-59 | -8.615850e-47 |
| Msa0145750 | Msa0808020 | 0.832191 | 1.088428e-55 | -8.615850e-47 |
| Msa0145750 | Msa0811270 | 0.810751 | 9.862426e-51 | -8.615850e-47 |
| Msa0145750 | Msa0825860 | 0.894888 | 1.614055e-75 | -8.615850e-47 |
| Msa0145750 | Msa0833290 | 0.825198 | 5.342088e-54 | -8.615850e-47 |
| Msa0145750 | Msa0833300 | 0.811184 | 7.950177e-51 | -8.615850e-47 |
| Msa0145750 | Msa0846210 | 0.811127 | 8.177201e-51 | -8.615850e-47 |
| Msa0145750 | Msa0846330 | 0.871409 | 6.984374e-67 | -8.615850e-47 |
| Msa0145750 | Msa0846350 | 0.868607 | 5.756236e-66 | -8.615850e-47 |
| Msa0145750 | Msa0854980 | 0.805458 | 1.322299e-49 | -8.615850e-47 |
| Msa0145750 | Msa0865320 | 0.872671 | 2.659352e-67 | -8.615850e-47 |
| Msa0145750 | Msa0872230 | 0.820780 | 5.723261e-53 | -8.615850e-47 |
| Msa0145750 | Msa0885280 | 0.812337 | 4.460046e-51 | -8.615850e-47 |
| Msa0145750 | Msa0885290 | 0.865870 | 4.314227e-65 | -8.615850e-47 |
| Msa0145750 | Msa0887920 | 0.841161 | 5.620908e-58 | -8.615850e-47 |
| Msa0145750 | Msa0888370 | 0.853750 | 1.943409e-61 | -8.615850e-47 |
| Msa0145750 | Msa0888420 | 0.832969 | 6.980058e-56 | -8.615850e-47 |
| Msa0145750 | Msa0896080 | 0.801809 | 7.556303e-49 | -8.615850e-47 |
| Msa0145750 | Msa0957680 | 0.802120 | 6.523040e-49 | -8.615850e-47 |
| Msa0145750 | Msa0957860 | 0.814664 | 1.373022e-51 | -8.615850e-47 |
| Msa0145750 | Msa0957960 | 0.814670 | 1.368745e-51 | -8.615850e-47 |
| Msa0145750 | Msa0979410 | 0.802470 | 5.524649e-49 | -8.615850e-47 |
| Msa0145750 | Msa0981270 | 0.804309 | 2.298568e-49 | -8.615850e-47 |
| Msa0145750 | Msa0981370 | 0.842516 | 2.465133e-58 | -8.615850e-47 |
| Msa0145750 | Msa0989060 | 0.897290 | 1.623457e-76 | -8.615850e-47 |
| Msa0145750 | Msa1016280 | 0.875133 | 3.917414e-68 | -8.615850e-47 |
| Msa0145750 | Msa1024240 | 0.875251 | 3.570634e-68 | -8.615850e-47 |
| Msa0145750 | Msa1025360 | 0.881651 | 2.010561e-70 | -8.615850e-47 |
| Msa0145750 | Msa1025370 | 0.897991 | 8.214138e-77 | -8.615850e-47 |
| Msa0145750 | Msa1030060 | 0.828018 | 1.134932e-54 | -8.615850e-47 |
| Msa0145750 | Msa1044830 | 0.879535 | 1.151594e-69 | -8.615850e-47 |
| Msa0145750 | Msa1044840 | 0.892210 | 1.958825e-74 | -8.615850e-47 |
| Msa0145750 | Msa1057920 | 0.801586 | 8.398219e-49 | -8.615850e-47 |
| Msa0145750 | Msa1060840 | 0.823139 | 1.627091e-53 | -8.615850e-47 |
| Msa0145750 | Msa1092990 | 0.886440 | 3.415566e-72 | -8.615850e-47 |
| Msa0145750 | Msa1096580 | 0.805736 | 1.155893e-49 | -8.615850e-47 |
| Msa0145750 | Msa1100980 | 0.879664 | 1.035991e-69 | -8.615850e-47 |
| Msa0145750 | Msa1109440 | 0.848907 | 4.544405e-60 | -8.615850e-47 |
| Msa0145750 | Msa1121200 | 0.875985 | 2.000986e-68 | -8.615850e-47 |
| Msa0145750 | Msa1123420 | 0.802602 | 5.189073e-49 | -8.615850e-47 |
| Msa0145750 | Msa1135740 | 0.872162 | 3.931032e-67 | -8.615850e-47 |
| Msa0145750 | Msa1136090 | 0.826660 | 2.401265e-54 | -8.615850e-47 |
| Msa0145750 | Msa1146110 | 0.845932 | 2.982234e-59 | -8.615850e-47 |
| Msa0145750 | Msa1149360 | 0.820624 | 6.218385e-53 | -8.615850e-47 |
| Msa0145750 | Msa1150370 | 0.871868 | 4.923967e-67 | -8.615850e-47 |
| Msa0145750 | Msa1150640 | 0.801506 | 8.721443e-49 | -8.615850e-47 |
| Msa0145750 | Msa1164120 | 0.805869 | 1.083775e-49 | -8.615850e-47 |
| Msa0145750 | Msa1173920 | 0.833658 | 4.700606e-56 | -8.615850e-47 |
| Msa0145750 | Msa1178720 | 0.811420 | 7.064207e-51 | -8.615850e-47 |
| Msa0145750 | Msa1182090 | 0.809300 | 2.025850e-50 | -8.615850e-47 |
| Msa0145750 | Msa1187940 | 0.883277 | 5.140275e-71 | -8.615850e-47 |
| Msa0145750 | Msa1187950 | 0.835476 | 1.641456e-56 | -8.615850e-47 |
| Msa0145750 | Msa1192640 | 0.866006 | 3.906767e-65 | -8.615850e-47 |
| Msa0145750 | Msa1193730 | 0.812742 | 3.637524e-51 | -8.615850e-47 |
| Msa0145750 | Msa1246880 | 0.850239 | 1.930648e-60 | -8.615850e-47 |
| Msa0145750 | Msa1260100 | 0.828410 | 9.128879e-55 | -8.615850e-47 |
| Msa0145750 | Msa1269670 | 0.877489 | 6.030539e-69 | -8.615850e-47 |
| Msa0145750 | Msa1270230 | 0.873277 | 1.665427e-67 | -8.615850e-47 |
| Msa0145750 | Msa1270240 | 0.878159 | 3.519751e-69 | -8.615850e-47 |
| Msa0145750 | Msa1270270 | 0.895908 | 6.128022e-76 | -8.615850e-47 |
| Msa0145750 | Msa1273230 | 0.811689 | 6.173093e-51 | -8.615850e-47 |
| Msa0145750 | Msa1283330 | 0.877039 | 8.649588e-69 | -8.615850e-47 |
| Msa0145750 | Msa1285930 | 0.887982 | 8.838312e-73 | -8.615850e-47 |
| Msa0145750 | Msa1287800 | 0.904693 | 9.398744e-80 | -8.615850e-47 |
| Msa0145750 | Msa1287810 | 0.895149 | 1.260842e-75 | -8.615850e-47 |
| Msa0145750 | Msa1287820 | 0.870653 | 1.240172e-66 | -8.615850e-47 |
| Msa0145750 | Msa1287830 | 0.812037 | 5.185919e-51 | -8.615850e-47 |
| Msa0145750 | Msa1289420 | 0.808991 | 2.358988e-50 | -8.615850e-47 |
| Msa0145750 | Msa1289430 | 0.851569 | 8.148640e-61 | -8.615850e-47 |
| Msa0145750 | Msa1297210 | 0.819896 | 9.127130e-53 | -8.615850e-47 |
| Msa0145750 | Msa1305480 | 0.810532 | 1.100103e-50 | -8.615850e-47 |
| Msa0145750 | Msa1307890 | 0.830439 | 2.935223e-55 | -8.615850e-47 |
| Msa0145750 | Msa1310120 | 0.800258 | 1.567928e-48 | -8.615850e-47 |
| Msa0145750 | Msa1314280 | 0.827789 | 1.288315e-54 | -8.615850e-47 |
| Msa0145750 | Msa1320300 | 0.849463 | 3.181504e-60 | -8.615850e-47 |
| Msa0145750 | Msa1340590 | 0.862579 | 4.585771e-64 | -8.615850e-47 |
| Msa0145750 | Msa1342200 | 0.837219 | 5.915550e-57 | -8.615850e-47 |
| Msa0145750 | Msa1369430 | 0.813639 | 2.311818e-51 | -8.615850e-47 |
| Msa0145750 | Msa1386330 | 0.802797 | 4.730708e-49 | -8.615850e-47 |
| Msa0145750 | Msa1397150 | 0.801197 | 1.008707e-48 | -8.615850e-47 |
| Msa0145750 | Msa1397580 | 0.855846 | 4.795946e-62 | -8.615850e-47 |
| Msa0145750 | Msa1404000 | 0.873004 | 2.056160e-67 | -8.615850e-47 |
| Msa0145750 | Msa1408780 | 0.806000 | 1.017117e-49 | -8.615850e-47 |
| Msa0145750 | Msa1415310 | 0.885241 | 9.632568e-72 | -8.615850e-47 |
| Msa0145750 | Msa1422180 | 0.872747 | 2.507135e-67 | -8.615850e-47 |
| Msa0145750 | Msa1433120 | 0.836418 | 9.468997e-57 | -8.615850e-47 |
| Msa0145750 | Msa1438250 | 0.808748 | 2.658651e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145750 | MtrunA17_Chr4g0034961 | 94.872 | 39 | 2 | 0 | 1 | 39 | 1 | 39 | 3.38e-19 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 16 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACTTCCAACTCCACTTGC+TGG | 0.378368 | 1_4:-5472647 | Msa0145750:three_prime_UTR |
| TCAAGCTCCTAACCGTTTCA+AGG | 0.411633 | 1_4:-5472824 | Msa0145750:intron |
| TGTTCTACCTTGAAACGGTT+AGG | 0.486003 | 1_4:+5472817 | None:intergenic |
| CATGCTCCAGCAAGTGGAGT+TGG | 0.502888 | 1_4:+5472641 | None:intergenic |
| TATGTTGTTCTACCTTGAAA+CGG | 0.506061 | 1_4:+5472812 | None:intergenic |
| GAAGAAGCCATTGTTGATGA+AGG | 0.534169 | 1_4:+5472943 | None:intergenic |
| AGAAGAAAACAGAAGCGGAA+TGG | 0.542095 | 1_4:+5472846 | None:intergenic |
| GAAAACAGAAGCGGAATGGA+AGG | 0.567367 | 1_4:+5472850 | None:intergenic |
| TGGAAGCATGCTCCAGCAAG+TGG | 0.573272 | 1_4:+5472635 | None:intergenic |
| TTCTTCGTTCTGTAAATCAG+CGG | 0.607845 | 1_4:-5472926 | Msa0145750:CDS |
| TCAGTAACCTTCATCAACAA+TGG | 0.611957 | 1_4:-5472950 | None:intergenic |
| AGTGAGTCTAGCATCAGCAA+TGG | 0.614389 | 1_4:+5472677 | None:intergenic |
| TGCTGGAGCATGCTTCCACA+AGG | 0.625759 | 1_4:-5472630 | Msa0145750:intron |
| TCAGCAATGGCAGTATGAAG+AGG | 0.642069 | 1_4:+5472690 | None:intergenic |
| GCTTGAGAAGAAAACAGAAG+CGG | 0.651968 | 1_4:+5472841 | None:intergenic |
| GGTTCTAGAACGATTCGCGA+AGG | 0.656504 | 1_4:+5472885 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATATTATGTATTGTTA+TGG | - | chr1_4:5471754-5471773 | Msa0145750:intron | 10.0% |
| !! | AATAGGAAAAAATTTAAATA+GGG | + | chr1_4:5472370-5472389 | None:intergenic | 10.0% |
| !! | CCTTAAATTTAAAAAAAATA+AGG | + | chr1_4:5472943-5472962 | None:intergenic | 10.0% |
| !!! | CCTTATTTTTTTTAAATTTA+AGG | - | chr1_4:5472940-5472959 | Msa0145750:exon | 10.0% |
| !! | TTAAATATTATGTATTGTTA+TGG | - | chr1_4:5471754-5471773 | Msa0145750:intron | 10.0% |
| !! | AATAGGAAAAAATTTAAATA+GGG | + | chr1_4:5472370-5472389 | None:intergenic | 10.0% |
| !! | CCTTAAATTTAAAAAAAATA+AGG | + | chr1_4:5472943-5472962 | None:intergenic | 10.0% |
| !!! | CCTTATTTTTTTTAAATTTA+AGG | - | chr1_4:5472940-5472959 | Msa0145750:exon | 10.0% |
| !!! | TATATAGAAAATGTTTTCAA+AGG | + | chr1_4:5471833-5471852 | None:intergenic | 15.0% |
| !!! | ATTTTCAAAATCCATTATTT+AGG | - | chr1_4:5472150-5472169 | Msa0145750:intron | 15.0% |
| !! | CAATAGGAAAAAATTTAAAT+AGG | + | chr1_4:5472371-5472390 | None:intergenic | 15.0% |
| !! | ATATAACAAATTAAAGCAAT+AGG | + | chr1_4:5472387-5472406 | None:intergenic | 15.0% |
| !!! | TTATATGTTTTGACTAAAAT+AGG | - | chr1_4:5472556-5472575 | Msa0145750:intron | 15.0% |
| !!! | TTTTCAAAGTTTAAATTGAA+TGG | - | chr1_4:5472659-5472678 | Msa0145750:three_prime_UTR | 15.0% |
| !! | TTTCAAAGTTTAAATTGAAT+GGG | - | chr1_4:5472660-5472679 | Msa0145750:three_prime_UTR | 15.0% |
| !!! | TATATAGAAAATGTTTTCAA+AGG | + | chr1_4:5471833-5471852 | None:intergenic | 15.0% |
| !!! | ATTTTCAAAATCCATTATTT+AGG | - | chr1_4:5472150-5472169 | Msa0145750:intron | 15.0% |
| !! | CAATAGGAAAAAATTTAAAT+AGG | + | chr1_4:5472371-5472390 | None:intergenic | 15.0% |
| !! | ATATAACAAATTAAAGCAAT+AGG | + | chr1_4:5472387-5472406 | None:intergenic | 15.0% |
| !!! | TTATATGTTTTGACTAAAAT+AGG | - | chr1_4:5472556-5472575 | Msa0145750:intron | 15.0% |
| !!! | TTTTCAAAGTTTAAATTGAA+TGG | - | chr1_4:5472659-5472678 | Msa0145750:three_prime_UTR | 15.0% |
| !! | TTTCAAAGTTTAAATTGAAT+GGG | - | chr1_4:5472660-5472679 | Msa0145750:three_prime_UTR | 15.0% |
| !!! | CTGTTTTTGAATGATTTTAT+CGG | - | chr1_4:5471467-5471486 | Msa0145750:intron | 20.0% |
| !! | ATTATGTATTGTTATGGTTA+TGG | - | chr1_4:5471760-5471779 | Msa0145750:intron | 20.0% |
| !! | AGATAGATATAATGAGTTAA+AGG | - | chr1_4:5471977-5471996 | Msa0145750:intron | 20.0% |
| !! | AAATGAGCAAAGTTTAAAAA+AGG | + | chr1_4:5472432-5472451 | None:intergenic | 20.0% |
| !!! | ATTTTTCAAAATCATTCTAC+AGG | - | chr1_4:5472455-5472474 | Msa0145750:intron | 20.0% |
| !! | TCTAAGTTATTATTTATGCA+AGG | - | chr1_4:5472797-5472816 | Msa0145750:intron | 20.0% |
| !! | CTAAGTTATTATTTATGCAA+GGG | - | chr1_4:5472798-5472817 | Msa0145750:intron | 20.0% |
| !!! | AAGATAATGTAGTTTTAGTT+AGG | - | chr1_4:5472843-5472862 | Msa0145750:CDS | 20.0% |
| !! | AAAAAAAATAAGGGATCATA+AGG | + | chr1_4:5472933-5472952 | None:intergenic | 20.0% |
| !!! | CTGTTTTTGAATGATTTTAT+CGG | - | chr1_4:5471467-5471486 | Msa0145750:intron | 20.0% |
| !! | ATTATGTATTGTTATGGTTA+TGG | - | chr1_4:5471760-5471779 | Msa0145750:intron | 20.0% |
| !! | AGATAGATATAATGAGTTAA+AGG | - | chr1_4:5471977-5471996 | Msa0145750:intron | 20.0% |
| !! | AAATGAGCAAAGTTTAAAAA+AGG | + | chr1_4:5472432-5472451 | None:intergenic | 20.0% |
| !!! | ATTTTTCAAAATCATTCTAC+AGG | - | chr1_4:5472455-5472474 | Msa0145750:intron | 20.0% |
| !! | TCTAAGTTATTATTTATGCA+AGG | - | chr1_4:5472797-5472816 | Msa0145750:intron | 20.0% |
| !! | CTAAGTTATTATTTATGCAA+GGG | - | chr1_4:5472798-5472817 | Msa0145750:intron | 20.0% |
| !!! | AAGATAATGTAGTTTTAGTT+AGG | - | chr1_4:5472843-5472862 | Msa0145750:CDS | 20.0% |
| !! | AAAAAAAATAAGGGATCATA+AGG | + | chr1_4:5472933-5472952 | None:intergenic | 20.0% |
| !! | ATATTTTCCAGCTTCAATTA+TGG | - | chr1_4:5471414-5471433 | Msa0145750:intron | 25.0% |
| ! | TAAAAAAAATCAGTACCTTG+TGG | + | chr1_4:5471594-5471613 | None:intergenic | 25.0% |
| ! | AAACATGTGTATGATATATG+AGG | - | chr1_4:5471700-5471719 | Msa0145750:intron | 25.0% |
| ! | TGTATGATATATGAGGTTTA+TGG | - | chr1_4:5471707-5471726 | Msa0145750:intron | 25.0% |
| !!! | TTTTATTGATTAGAGATGAG+AGG | - | chr1_4:5471902-5471921 | Msa0145750:intron | 25.0% |
| !! | TTTATTGATTAGAGATGAGA+GGG | - | chr1_4:5471903-5471922 | Msa0145750:intron | 25.0% |
| ! | AGATATAATGAGTTAAAGGA+TGG | - | chr1_4:5471981-5472000 | Msa0145750:intron | 25.0% |
| ! | ATTGCATTTATTACAGGAAA+GGG | + | chr1_4:5472113-5472132 | None:intergenic | 25.0% |
| ! | TATTGCATTTATTACAGGAA+AGG | + | chr1_4:5472114-5472133 | None:intergenic | 25.0% |
| ! | TCTCTTATTGCATTTATTAC+AGG | + | chr1_4:5472119-5472138 | None:intergenic | 25.0% |
| ! | TGCAATAAGAGAAAATATGT+TGG | - | chr1_4:5472127-5472146 | Msa0145750:intron | 25.0% |
| !!! | CATGTTGATTTGTCATAAAA+GGG | + | chr1_4:5472199-5472218 | None:intergenic | 25.0% |
| !!! | ACATGTTGATTTGTCATAAA+AGG | + | chr1_4:5472200-5472219 | None:intergenic | 25.0% |
| ! | GCAAAGTTTAAAAAAGGAAT+TGG | + | chr1_4:5472426-5472445 | None:intergenic | 25.0% |
| !! | AACTTTGAAAAAGAAACCAT+TGG | + | chr1_4:5472650-5472669 | None:intergenic | 25.0% |
| !!! | TCTTACTTTTAGTTTCAGTT+TGG | - | chr1_4:5472873-5472892 | Msa0145750:CDS | 25.0% |
| !! | GTCTCATTTTATATTCAGTT+TGG | - | chr1_4:5472906-5472925 | Msa0145750:CDS | 25.0% |
| !! | ATATTTTCCAGCTTCAATTA+TGG | - | chr1_4:5471414-5471433 | Msa0145750:intron | 25.0% |
| ! | TAAAAAAAATCAGTACCTTG+TGG | + | chr1_4:5471594-5471613 | None:intergenic | 25.0% |
| ! | AAACATGTGTATGATATATG+AGG | - | chr1_4:5471700-5471719 | Msa0145750:intron | 25.0% |
| ! | TGTATGATATATGAGGTTTA+TGG | - | chr1_4:5471707-5471726 | Msa0145750:intron | 25.0% |
| !!! | TTTTATTGATTAGAGATGAG+AGG | - | chr1_4:5471902-5471921 | Msa0145750:intron | 25.0% |
| !! | TTTATTGATTAGAGATGAGA+GGG | - | chr1_4:5471903-5471922 | Msa0145750:intron | 25.0% |
| ! | AGATATAATGAGTTAAAGGA+TGG | - | chr1_4:5471981-5472000 | Msa0145750:intron | 25.0% |
| ! | ATTGCATTTATTACAGGAAA+GGG | + | chr1_4:5472113-5472132 | None:intergenic | 25.0% |
| ! | TATTGCATTTATTACAGGAA+AGG | + | chr1_4:5472114-5472133 | None:intergenic | 25.0% |
| ! | TCTCTTATTGCATTTATTAC+AGG | + | chr1_4:5472119-5472138 | None:intergenic | 25.0% |
| ! | TGCAATAAGAGAAAATATGT+TGG | - | chr1_4:5472127-5472146 | Msa0145750:intron | 25.0% |
| !!! | CATGTTGATTTGTCATAAAA+GGG | + | chr1_4:5472199-5472218 | None:intergenic | 25.0% |
| !!! | ACATGTTGATTTGTCATAAA+AGG | + | chr1_4:5472200-5472219 | None:intergenic | 25.0% |
| ! | GCAAAGTTTAAAAAAGGAAT+TGG | + | chr1_4:5472426-5472445 | None:intergenic | 25.0% |
| !! | AACTTTGAAAAAGAAACCAT+TGG | + | chr1_4:5472650-5472669 | None:intergenic | 25.0% |
| !!! | TCTTACTTTTAGTTTCAGTT+TGG | - | chr1_4:5472873-5472892 | Msa0145750:CDS | 25.0% |
| !! | GTCTCATTTTATATTCAGTT+TGG | - | chr1_4:5472906-5472925 | Msa0145750:CDS | 25.0% |
| TATGTTGTTCTACCTTGAAA+CGG | + | chr1_4:5471397-5471416 | None:intergenic | 30.0% | |
| TTCATTTCCATAATTGAAGC+TGG | + | chr1_4:5471424-5471443 | None:intergenic | 30.0% | |
| !! | TGAATGATTTTATCGGTTGT+TGG | - | chr1_4:5471474-5471493 | Msa0145750:intron | 30.0% |
| ! | TTATTGATTAGAGATGAGAG+GGG | - | chr1_4:5471904-5471923 | Msa0145750:intron | 30.0% |
| GGTGTAGAATTAAGATAAAG+AGG | - | chr1_4:5472002-5472021 | Msa0145750:intron | 30.0% | |
| GGAAAGGGAAAAGAAAAAAT+TGG | + | chr1_4:5472098-5472117 | None:intergenic | 30.0% | |
| TATGACAAATCAACATGTTG+TGG | - | chr1_4:5472202-5472221 | Msa0145750:intron | 30.0% | |
| CATGTCAGTAGAGAAAAATA+AGG | - | chr1_4:5472255-5472274 | Msa0145750:intron | 30.0% | |
| TTCTTCTTCTAACTTACCAA+TGG | - | chr1_4:5472631-5472650 | Msa0145750:three_prime_UTR | 30.0% | |
| CAAAGTTTAAATTGAATGGG+TGG | - | chr1_4:5472663-5472682 | Msa0145750:three_prime_UTR | 30.0% | |
| CGCACTACTAAAAAAATTTG+TGG | + | chr1_4:5472717-5472736 | None:intergenic | 30.0% | |
| AGATTTAGAGACTCAATTCT+TGG | + | chr1_4:5472740-5472759 | None:intergenic | 30.0% | |
| AAGAATTGAGTCTCTAAATC+TGG | - | chr1_4:5472739-5472758 | Msa0145750:intron | 30.0% | |
| AAACTACATTATCTTAGCAC+TGG | + | chr1_4:5472838-5472857 | None:intergenic | 30.0% | |
| TATGTTGTTCTACCTTGAAA+CGG | + | chr1_4:5471397-5471416 | None:intergenic | 30.0% | |
| TTCATTTCCATAATTGAAGC+TGG | + | chr1_4:5471424-5471443 | None:intergenic | 30.0% | |
| !! | TGAATGATTTTATCGGTTGT+TGG | - | chr1_4:5471474-5471493 | Msa0145750:intron | 30.0% |
| ! | TTATTGATTAGAGATGAGAG+GGG | - | chr1_4:5471904-5471923 | Msa0145750:intron | 30.0% |
| GGTGTAGAATTAAGATAAAG+AGG | - | chr1_4:5472002-5472021 | Msa0145750:intron | 30.0% | |
| GGAAAGGGAAAAGAAAAAAT+TGG | + | chr1_4:5472098-5472117 | None:intergenic | 30.0% | |
| TATGACAAATCAACATGTTG+TGG | - | chr1_4:5472202-5472221 | Msa0145750:intron | 30.0% | |
| CATGTCAGTAGAGAAAAATA+AGG | - | chr1_4:5472255-5472274 | Msa0145750:intron | 30.0% | |
| TTCTTCTTCTAACTTACCAA+TGG | - | chr1_4:5472631-5472650 | Msa0145750:three_prime_UTR | 30.0% | |
| CAAAGTTTAAATTGAATGGG+TGG | - | chr1_4:5472663-5472682 | Msa0145750:three_prime_UTR | 30.0% | |
| CGCACTACTAAAAAAATTTG+TGG | + | chr1_4:5472717-5472736 | None:intergenic | 30.0% | |
| AGATTTAGAGACTCAATTCT+TGG | + | chr1_4:5472740-5472759 | None:intergenic | 30.0% | |
| AAGAATTGAGTCTCTAAATC+TGG | - | chr1_4:5472739-5472758 | Msa0145750:intron | 30.0% | |
| AAACTACATTATCTTAGCAC+TGG | + | chr1_4:5472838-5472857 | None:intergenic | 30.0% | |
| TTCTTCGTTCTGTAAATCAG+CGG | - | chr1_4:5471280-5471299 | Msa0145750:intron | 35.0% | |
| GTTTCAGCAATTGATTGTCT+AGG | - | chr1_4:5471785-5471804 | Msa0145750:intron | 35.0% | |
| ATCAGCACGAACCTAAATAA+TGG | + | chr1_4:5472164-5472183 | None:intergenic | 35.0% | |
| !! | CTATGCTTAAATTTTGGTGG+AGG | + | chr1_4:5472304-5472323 | None:intergenic | 35.0% |
| ! | GGACTATGCTTAAATTTTGG+TGG | + | chr1_4:5472307-5472326 | None:intergenic | 35.0% |
| ! | GGAGGACTATGCTTAAATTT+TGG | + | chr1_4:5472310-5472329 | None:intergenic | 35.0% |
| TACATGTTCAACATCAAAGG+AGG | + | chr1_4:5472328-5472347 | None:intergenic | 35.0% | |
| TTCTACAGGATGCTAAACTT+AGG | - | chr1_4:5472469-5472488 | Msa0145750:intron | 35.0% | |
| AAACTTAGGCTGCTAATGTA+CGG | - | chr1_4:5472483-5472502 | Msa0145750:intron | 35.0% | |
| TTCTTCGTTCTGTAAATCAG+CGG | - | chr1_4:5471280-5471299 | Msa0145750:intron | 35.0% | |
| GTTTCAGCAATTGATTGTCT+AGG | - | chr1_4:5471785-5471804 | Msa0145750:intron | 35.0% | |
| ATCAGCACGAACCTAAATAA+TGG | + | chr1_4:5472164-5472183 | None:intergenic | 35.0% | |
| !! | CTATGCTTAAATTTTGGTGG+AGG | + | chr1_4:5472304-5472323 | None:intergenic | 35.0% |
| ! | GGACTATGCTTAAATTTTGG+TGG | + | chr1_4:5472307-5472326 | None:intergenic | 35.0% |
| ! | GGAGGACTATGCTTAAATTT+TGG | + | chr1_4:5472310-5472329 | None:intergenic | 35.0% |
| TACATGTTCAACATCAAAGG+AGG | + | chr1_4:5472328-5472347 | None:intergenic | 35.0% | |
| TTCTACAGGATGCTAAACTT+AGG | - | chr1_4:5472469-5472488 | Msa0145750:intron | 35.0% | |
| AAACTTAGGCTGCTAATGTA+CGG | - | chr1_4:5472483-5472502 | Msa0145750:intron | 35.0% | |
| ! | GAAGAAGCCATTGTTGATGA+AGG | + | chr1_4:5471266-5471285 | None:intergenic | 40.0% |
| !! | AATGGAAGGTTTTTGAGCGA+AGG | + | chr1_4:5471345-5471364 | None:intergenic | 40.0% |
| AGAAGAAAACAGAAGCGGAA+TGG | + | chr1_4:5471363-5471382 | None:intergenic | 40.0% | |
| GCTTGAGAAGAAAACAGAAG+CGG | + | chr1_4:5471368-5471387 | None:intergenic | 40.0% | |
| TGTTCTACCTTGAAACGGTT+AGG | + | chr1_4:5471392-5471411 | None:intergenic | 40.0% | |
| !! | GAGAGGGGTATTCTTTGATT+TGG | - | chr1_4:5471919-5471938 | Msa0145750:intron | 40.0% |
| TGAAATATGCATCAGACGAG+AGG | - | chr1_4:5471942-5471961 | Msa0145750:intron | 40.0% | |
| CTTAGAAAACTCACCTCAGT+TGG | - | chr1_4:5472030-5472049 | Msa0145750:intron | 40.0% | |
| !!! | TGCTGCTGTTCTGTTTTAAC+AGG | - | chr1_4:5472225-5472244 | Msa0145750:intron | 40.0% |
| !! | GGAGGAAGCATTAGTGTTAA+TGG | + | chr1_4:5472286-5472305 | None:intergenic | 40.0% |
| CGGTACATGTTCAACATCAA+AGG | + | chr1_4:5472331-5472350 | None:intergenic | 40.0% | |
| TTGATGTTGAACATGTACCG+AGG | - | chr1_4:5472331-5472350 | Msa0145750:intron | 40.0% | |
| ATGTACCGAGGAACTCAATT+TGG | - | chr1_4:5472343-5472362 | Msa0145750:intron | 40.0% | |
| !!! | TGTACGGTTTTGAGTTTCTG+TGG | - | chr1_4:5472499-5472518 | Msa0145750:intron | 40.0% |
| GGTGGAAAGTCATTCAAAAC+AGG | - | chr1_4:5472681-5472700 | Msa0145750:three_prime_UTR | 40.0% | |
| !! | ATCTTAGCACTGGTTTGCTA+TGG | + | chr1_4:5472828-5472847 | None:intergenic | 40.0% |
| ! | GAAGAAGCCATTGTTGATGA+AGG | + | chr1_4:5471266-5471285 | None:intergenic | 40.0% |
| !! | AATGGAAGGTTTTTGAGCGA+AGG | + | chr1_4:5471345-5471364 | None:intergenic | 40.0% |
| AGAAGAAAACAGAAGCGGAA+TGG | + | chr1_4:5471363-5471382 | None:intergenic | 40.0% | |
| GCTTGAGAAGAAAACAGAAG+CGG | + | chr1_4:5471368-5471387 | None:intergenic | 40.0% | |
| TGTTCTACCTTGAAACGGTT+AGG | + | chr1_4:5471392-5471411 | None:intergenic | 40.0% | |
| !! | GAGAGGGGTATTCTTTGATT+TGG | - | chr1_4:5471919-5471938 | Msa0145750:intron | 40.0% |
| TGAAATATGCATCAGACGAG+AGG | - | chr1_4:5471942-5471961 | Msa0145750:intron | 40.0% | |
| CTTAGAAAACTCACCTCAGT+TGG | - | chr1_4:5472030-5472049 | Msa0145750:intron | 40.0% | |
| !!! | TGCTGCTGTTCTGTTTTAAC+AGG | - | chr1_4:5472225-5472244 | Msa0145750:intron | 40.0% |
| !! | GGAGGAAGCATTAGTGTTAA+TGG | + | chr1_4:5472286-5472305 | None:intergenic | 40.0% |
| CGGTACATGTTCAACATCAA+AGG | + | chr1_4:5472331-5472350 | None:intergenic | 40.0% | |
| TTGATGTTGAACATGTACCG+AGG | - | chr1_4:5472331-5472350 | Msa0145750:intron | 40.0% | |
| ATGTACCGAGGAACTCAATT+TGG | - | chr1_4:5472343-5472362 | Msa0145750:intron | 40.0% | |
| !!! | TGTACGGTTTTGAGTTTCTG+TGG | - | chr1_4:5472499-5472518 | Msa0145750:intron | 40.0% |
| GGTGGAAAGTCATTCAAAAC+AGG | - | chr1_4:5472681-5472700 | Msa0145750:three_prime_UTR | 40.0% | |
| !! | ATCTTAGCACTGGTTTGCTA+TGG | + | chr1_4:5472828-5472847 | None:intergenic | 40.0% |
| GAAAACAGAAGCGGAATGGA+AGG | + | chr1_4:5471359-5471378 | None:intergenic | 45.0% | |
| TCAAGCTCCTAACCGTTTCA+AGG | - | chr1_4:5471382-5471401 | Msa0145750:intron | 45.0% | |
| TCAGCAATGGCAGTATGAAG+AGG | + | chr1_4:5471519-5471538 | None:intergenic | 45.0% | |
| AGTGAGTCTAGCATCAGCAA+TGG | + | chr1_4:5471532-5471551 | None:intergenic | 45.0% | |
| TTACTTCCAACTCCACTTGC+TGG | - | chr1_4:5471559-5471578 | Msa0145750:intron | 45.0% | |
| !! | GAAGAGCATTTCTCCAACTG+AGG | + | chr1_4:5472046-5472065 | None:intergenic | 45.0% |
| AGGGTCCAAATTGAGTTCCT+CGG | + | chr1_4:5472351-5472370 | None:intergenic | 45.0% | |
| GAAAACAGAAGCGGAATGGA+AGG | + | chr1_4:5471359-5471378 | None:intergenic | 45.0% | |
| TCAAGCTCCTAACCGTTTCA+AGG | - | chr1_4:5471382-5471401 | Msa0145750:intron | 45.0% | |
| TCAGCAATGGCAGTATGAAG+AGG | + | chr1_4:5471519-5471538 | None:intergenic | 45.0% | |
| AGTGAGTCTAGCATCAGCAA+TGG | + | chr1_4:5471532-5471551 | None:intergenic | 45.0% | |
| TTACTTCCAACTCCACTTGC+TGG | - | chr1_4:5471559-5471578 | Msa0145750:intron | 45.0% | |
| !! | GAAGAGCATTTCTCCAACTG+AGG | + | chr1_4:5472046-5472065 | None:intergenic | 45.0% |
| AGGGTCCAAATTGAGTTCCT+CGG | + | chr1_4:5472351-5472370 | None:intergenic | 45.0% | |
| !! | CTTAAATTTAAAAAAAATAA+GGG | + | chr1_4:5472942-5472961 | None:intergenic | 5.0% |
| !! | CTTAAATTTAAAAAAAATAA+GGG | + | chr1_4:5472942-5472961 | None:intergenic | 5.0% |
| !! | GGTTCTAGAACGATTCGCGA+AGG | + | chr1_4:5471324-5471343 | None:intergenic | 50.0% |
| !! | GGTTCTAGAACGATTCGCGA+AGG | + | chr1_4:5471324-5471343 | None:intergenic | 50.0% |
| CATGCTCCAGCAAGTGGAGT+TGG | + | chr1_4:5471568-5471587 | None:intergenic | 55.0% | |
| ! | TGGAAGCATGCTCCAGCAAG+TGG | + | chr1_4:5471574-5471593 | None:intergenic | 55.0% |
| TGCTGGAGCATGCTTCCACA+AGG | - | chr1_4:5471576-5471595 | Msa0145750:intron | 55.0% | |
| CATGCTCCAGCAAGTGGAGT+TGG | + | chr1_4:5471568-5471587 | None:intergenic | 55.0% | |
| ! | TGGAAGCATGCTCCAGCAAG+TGG | + | chr1_4:5471574-5471593 | None:intergenic | 55.0% |
| TGCTGGAGCATGCTTCCACA+AGG | - | chr1_4:5471576-5471595 | Msa0145750:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 5471260 | 5472968 | 5471260 | ID=Msa0145750;Name=Msa0145750 |
| chr1_4 | mRNA | 5471260 | 5472968 | 5471260 | ID=Msa0145750-mRNA-1;Parent=Msa0145750;Name=Msa0145750-mRNA-1;_AED=0.10;_eAED=0.49;_QI=15|0|0|0.66|0|0.33|3|99|44 |
| chr1_4 | exon | 5472825 | 5472968 | 5472825 | ID=Msa0145750-mRNA-1:exon:2292;Parent=Msa0145750-mRNA-1 |
| chr1_4 | exon | 5472631 | 5472728 | 5472631 | ID=Msa0145750-mRNA-1:exon:2291;Parent=Msa0145750-mRNA-1 |
| chr1_4 | exon | 5471260 | 5471266 | 5471260 | ID=Msa0145750-mRNA-1:exon:2290;Parent=Msa0145750-mRNA-1 |
| chr1_4 | five_prime_UTR | 5472954 | 5472968 | 5472954 | ID=Msa0145750-mRNA-1:five_prime_utr;Parent=Msa0145750-mRNA-1 |
| chr1_4 | CDS | 5472825 | 5472953 | 5472825 | ID=Msa0145750-mRNA-1:cds;Parent=Msa0145750-mRNA-1 |
| chr1_4 | CDS | 5472723 | 5472728 | 5472723 | ID=Msa0145750-mRNA-1:cds;Parent=Msa0145750-mRNA-1 |
| chr1_4 | three_prime_UTR | 5472631 | 5472722 | 5472631 | ID=Msa0145750-mRNA-1:three_prime_utr;Parent=Msa0145750-mRNA-1 |
| chr1_4 | three_prime_UTR | 5471260 | 5471266 | 5471260 | ID=Msa0145750-mRNA-1:three_prime_utr;Parent=Msa0145750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
