Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415310 | A0A072TDI2 | 72.549 | 51 | 4 | 1 | 18 | 58 | 23 | 73 | 2.40e-12 | 65.1 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012700 | Msa1415310 | 0.830802 | 2.391996e-55 | -8.615850e-47 |
| Msa0013750 | Msa1415310 | 0.812223 | 4.723213e-51 | -8.615850e-47 |
| Msa0015750 | Msa1415310 | 0.863056 | 3.268975e-64 | -8.615850e-47 |
| Msa0016570 | Msa1415310 | 0.840032 | 1.109754e-57 | -8.615850e-47 |
| Msa0016580 | Msa1415310 | 0.812012 | 5.251560e-51 | -8.615850e-47 |
| Msa0092630 | Msa1415310 | 0.800833 | 1.197356e-48 | -8.615850e-47 |
| Msa0102070 | Msa1415310 | 0.896072 | 5.239772e-76 | -8.615850e-47 |
| Msa0110270 | Msa1415310 | 0.800011 | 1.760522e-48 | -8.615850e-47 |
| Msa0111510 | Msa1415310 | 0.809757 | 1.615778e-50 | -8.615850e-47 |
| Msa0118050 | Msa1415310 | 0.809890 | 1.513129e-50 | -8.615850e-47 |
| Msa0118060 | Msa1415310 | 0.809081 | 2.257222e-50 | -8.615850e-47 |
| Msa1345660 | Msa1415310 | 0.812824 | 3.490232e-51 | -8.615850e-47 |
| Msa1369430 | Msa1415310 | 0.838869 | 2.225360e-57 | -8.615850e-47 |
| Msa1370210 | Msa1415310 | 0.811849 | 5.699500e-51 | -8.615850e-47 |
| Msa1382690 | Msa1415310 | 0.818455 | 1.943201e-52 | -8.615850e-47 |
| Msa1382700 | Msa1415310 | 0.827163 | 1.821259e-54 | -8.615850e-47 |
| Msa1386330 | Msa1415310 | 0.838972 | 2.092544e-57 | -8.615850e-47 |
| Msa1397150 | Msa1415310 | 0.800237 | 1.583511e-48 | -8.615850e-47 |
| Msa1397580 | Msa1415310 | 0.888986 | 3.627687e-73 | -8.615850e-47 |
| Msa1402790 | Msa1415310 | 0.821150 | 4.704174e-53 | -8.615850e-47 |
| Msa1404000 | Msa1415310 | 0.897300 | 1.606804e-76 | -8.615850e-47 |
| Msa1408780 | Msa1415310 | 0.828998 | 6.581653e-55 | -8.615850e-47 |
| Msa1415310 | Msa1422180 | 0.869432 | 3.109778e-66 | -8.615850e-47 |
| Msa1415310 | Msa1433120 | 0.872930 | 2.177404e-67 | -8.615850e-47 |
| Msa1415310 | Msa1451190 | 0.810324 | 1.219935e-50 | -8.615850e-47 |
| Msa0604350 | Msa1415310 | 0.849215 | 3.730996e-60 | -8.615850e-47 |
| Msa0636170 | Msa1415310 | 0.863469 | 2.435266e-64 | -8.615850e-47 |
| Msa0639610 | Msa1415310 | 0.837787 | 4.228848e-57 | -8.615850e-47 |
| Msa0650630 | Msa1415310 | 0.815870 | 7.407016e-52 | -8.615850e-47 |
| Msa0678930 | Msa1415310 | 0.830783 | 2.418230e-55 | -8.615850e-47 |
| Msa0694370 | Msa1415310 | 0.819687 | 1.018851e-52 | -8.615850e-47 |
| Msa0718780 | Msa1415310 | 0.838218 | 3.276600e-57 | -8.615850e-47 |
| Msa0725850 | Msa1415310 | 0.868731 | 5.249380e-66 | -8.615850e-47 |
| Msa0726140 | Msa1415310 | 0.896189 | 4.682787e-76 | -8.615850e-47 |
| Msa0729800 | Msa1415310 | 0.884617 | 1.646205e-71 | -8.615850e-47 |
| Msa0731560 | Msa1415310 | 0.804279 | 2.331603e-49 | -8.615850e-47 |
| Msa0732310 | Msa1415310 | 0.830564 | 2.734965e-55 | -8.615850e-47 |
| Msa0732710 | Msa1415310 | 0.811594 | 6.474381e-51 | -8.615850e-47 |
| Msa0733290 | Msa1415310 | 0.887601 | 1.236192e-72 | -8.615850e-47 |
| Msa0735080 | Msa1415310 | 0.816219 | 6.191823e-52 | -8.615850e-47 |
| Msa0741990 | Msa1415310 | 0.808603 | 2.856444e-50 | -8.615850e-47 |
| Msa0743810 | Msa1415310 | 0.912628 | 1.566904e-83 | -8.615850e-47 |
| Msa0745060 | Msa1415310 | 0.926256 | 6.015526e-91 | -8.615850e-47 |
| Msa0767720 | Msa1415310 | 0.853180 | 2.833522e-61 | -8.615850e-47 |
| Msa0768290 | Msa1415310 | 0.806494 | 8.004543e-50 | -8.615850e-47 |
| Msa0777870 | Msa1415310 | 0.837685 | 4.492339e-57 | -8.615850e-47 |
| Msa0783160 | Msa1415310 | 0.898799 | 3.722343e-77 | -8.615850e-47 |
| Msa0784290 | Msa1415310 | 0.823365 | 1.440808e-53 | -8.615850e-47 |
| Msa0784300 | Msa1415310 | 0.808402 | 3.151607e-50 | -8.615850e-47 |
| Msa0787600 | Msa1415310 | 0.880633 | 4.672540e-70 | -8.615850e-47 |
| Msa0808010 | Msa1415310 | 0.887009 | 2.077511e-72 | -8.615850e-47 |
| Msa0808020 | Msa1415310 | 0.881926 | 1.598966e-70 | -8.615850e-47 |
| Msa0811080 | Msa1415310 | 0.809910 | 1.497725e-50 | -8.615850e-47 |
| Msa0811270 | Msa1415310 | 0.821163 | 4.672799e-53 | -8.615850e-47 |
| Msa0824600 | Msa1415310 | 0.825902 | 3.638345e-54 | -8.615850e-47 |
| Msa0825860 | Msa1415310 | 0.932719 | 5.580000e-95 | -8.615850e-47 |
| Msa0833290 | Msa1415310 | 0.832866 | 7.403141e-56 | -8.615850e-47 |
| Msa0833300 | Msa1415310 | 0.815988 | 6.971631e-52 | -8.615850e-47 |
| Msa0123810 | Msa1415310 | 0.830371 | 3.048838e-55 | -8.615850e-47 |
| Msa0124100 | Msa1415310 | 0.827957 | 1.174172e-54 | -8.615850e-47 |
| Msa0124150 | Msa1415310 | 0.801985 | 6.954053e-49 | -8.615850e-47 |
| Msa0142220 | Msa1415310 | 0.812142 | 4.920262e-51 | -8.615850e-47 |
| Msa0145750 | Msa1415310 | 0.885241 | 9.632568e-72 | -8.615850e-47 |
| Msa0153910 | Msa1415310 | 0.810988 | 8.764467e-51 | -8.615850e-47 |
| Msa0192970 | Msa1415310 | 0.801772 | 7.689953e-49 | -8.615850e-47 |
| Msa0197010 | Msa1415310 | 0.814782 | 1.292969e-51 | -8.615850e-47 |
| Msa0200000 | Msa1415310 | 0.882147 | 1.329309e-70 | -8.615850e-47 |
| Msa0227480 | Msa1415310 | 0.870424 | 1.474618e-66 | -8.615850e-47 |
| Msa0231000 | Msa1415310 | 0.808033 | 3.777759e-50 | -8.615850e-47 |
| Msa0232850 | Msa1415310 | 0.882063 | 1.426402e-70 | -8.615850e-47 |
| Msa1230430 | Msa1415310 | 0.819095 | 1.390001e-52 | -8.615850e-47 |
| Msa1246880 | Msa1415310 | 0.872013 | 4.406844e-67 | -8.615850e-47 |
| Msa1248310 | Msa1415310 | 0.807561 | 4.759838e-50 | -8.615850e-47 |
| Msa1260100 | Msa1415310 | 0.841526 | 4.503728e-58 | -8.615850e-47 |
| Msa1269670 | Msa1415310 | 0.918089 | 2.395353e-86 | -8.615850e-47 |
| Msa1270230 | Msa1415310 | 0.908214 | 2.182359e-81 | -8.615850e-47 |
| Msa1270240 | Msa1415310 | 0.888649 | 4.895698e-73 | -8.615850e-47 |
| Msa1270270 | Msa1415310 | 0.917411 | 5.487769e-86 | -8.615850e-47 |
| Msa1273230 | Msa1415310 | 0.827089 | 1.896246e-54 | -8.615850e-47 |
| Msa1283330 | Msa1415310 | 0.907315 | 5.784396e-81 | -8.615850e-47 |
| Msa1285930 | Msa1415310 | 0.905189 | 5.579387e-80 | -8.615850e-47 |
| Msa1287800 | Msa1415310 | 0.908754 | 1.209887e-81 | -8.615850e-47 |
| Msa1287810 | Msa1415310 | 0.924869 | 3.954103e-90 | -8.615850e-47 |
| Msa1287820 | Msa1415310 | 0.830606 | 2.671040e-55 | -8.615850e-47 |
| Msa1287830 | Msa1415310 | 0.851948 | 6.362980e-61 | -8.615850e-47 |
| Msa1289420 | Msa1415310 | 0.832910 | 7.216601e-56 | -8.615850e-47 |
| Msa1289430 | Msa1415310 | 0.872714 | 2.571117e-67 | -8.615850e-47 |
| Msa1297210 | Msa1415310 | 0.835070 | 2.078242e-56 | -8.615850e-47 |
| Msa1305480 | Msa1415310 | 0.856171 | 3.853830e-62 | -8.615850e-47 |
| Msa1307890 | Msa1415310 | 0.873055 | 1.976927e-67 | -8.615850e-47 |
| Msa1310120 | Msa1415310 | 0.812445 | 4.225450e-51 | -8.615850e-47 |
| Msa1314280 | Msa1415310 | 0.819064 | 1.412741e-52 | -8.615850e-47 |
| Msa1320300 | Msa1415310 | 0.886907 | 2.272699e-72 | -8.615850e-47 |
| Msa1321560 | Msa1415310 | 0.857393 | 1.683238e-62 | -8.615850e-47 |
| Msa1340590 | Msa1415310 | 0.897637 | 1.158663e-76 | -8.615850e-47 |
| Msa1342200 | Msa1415310 | 0.857142 | 1.997004e-62 | -8.615850e-47 |
| Msa0365500 | Msa1415310 | 0.862201 | 5.990816e-64 | -8.615850e-47 |
| Msa0366580 | Msa1415310 | 0.844938 | 5.543953e-59 | -8.615850e-47 |
| Msa0369730 | Msa1415310 | 0.808546 | 2.936742e-50 | -8.615850e-47 |
| Msa0384800 | Msa1415310 | 0.886033 | 4.861153e-72 | -8.615850e-47 |
| Msa0384890 | Msa1415310 | 0.818140 | 2.289983e-52 | -8.615850e-47 |
| Msa0394970 | Msa1415310 | 0.813396 | 2.614300e-51 | -8.615850e-47 |
| Msa0396600 | Msa1415310 | 0.825881 | 3.680237e-54 | -8.615850e-47 |
| Msa0406120 | Msa1415310 | 0.869413 | 3.153741e-66 | -8.615850e-47 |
| Msa0406280 | Msa1415310 | 0.825845 | 3.754205e-54 | -8.615850e-47 |
| Msa0414410 | Msa1415310 | 0.876375 | 1.467849e-68 | -8.615850e-47 |
| Msa0414420 | Msa1415310 | 0.930114 | 2.621553e-93 | -8.615850e-47 |
| Msa0423020 | Msa1415310 | 0.813834 | 2.094082e-51 | -8.615850e-47 |
| Msa0435230 | Msa1415310 | 0.806840 | 6.765664e-50 | -8.615850e-47 |
| Msa0436780 | Msa1415310 | 0.829530 | 4.890587e-55 | -8.615850e-47 |
| Msa0438620 | Msa1415310 | 0.860024 | 2.755360e-63 | -8.615850e-47 |
| Msa0450000 | Msa1415310 | 0.870164 | 1.794990e-66 | -8.615850e-47 |
| Msa0450570 | Msa1415310 | 0.840808 | 6.958269e-58 | -8.615850e-47 |
| Msa0451730 | Msa1415310 | 0.861490 | 9.891863e-64 | -8.615850e-47 |
| Msa0452900 | Msa1415310 | 0.931542 | 3.239498e-94 | -8.615850e-47 |
| Msa0452910 | Msa1415310 | 0.826731 | 2.310164e-54 | -8.615850e-47 |
| Msa0453120 | Msa1415310 | 0.849096 | 4.025232e-60 | -8.615850e-47 |
| Msa0454370 | Msa1415310 | 0.851115 | 1.095116e-60 | -8.615850e-47 |
| Msa0454910 | Msa1415310 | 0.871541 | 6.320419e-67 | -8.615850e-47 |
| Msa0458420 | Msa1415310 | 0.811341 | 7.349039e-51 | -8.615850e-47 |
| Msa0459160 | Msa1415310 | 0.840938 | 6.430909e-58 | -8.615850e-47 |
| Msa0459170 | Msa1415310 | 0.856516 | 3.051887e-62 | -8.615850e-47 |
| Msa0482620 | Msa1415310 | 0.821774 | 3.376077e-53 | -8.615850e-47 |
| Msa0979850 | Msa1415310 | 0.829364 | 5.364976e-55 | -8.615850e-47 |
| Msa0981270 | Msa1415310 | 0.802947 | 4.404276e-49 | -8.615850e-47 |
| Msa0981370 | Msa1415310 | 0.850926 | 1.237594e-60 | -8.615850e-47 |
| Msa0986360 | Msa1415310 | 0.806354 | 8.566734e-50 | -8.615850e-47 |
| Msa0989060 | Msa1415310 | 0.880744 | 4.265806e-70 | -8.615850e-47 |
| Msa1016280 | Msa1415310 | 0.901191 | 3.439059e-78 | -8.615850e-47 |
| Msa1024240 | Msa1415310 | 0.864565 | 1.109947e-64 | -8.615850e-47 |
| Msa1025360 | Msa1415310 | 0.925284 | 2.258505e-90 | -8.615850e-47 |
| Msa1025370 | Msa1415310 | 0.934193 | 5.898433e-96 | -8.615850e-47 |
| Msa1028230 | Msa1415310 | 0.823065 | 1.692529e-53 | -8.615850e-47 |
| Msa1030060 | Msa1415310 | 0.823937 | 1.058209e-53 | -8.615850e-47 |
| Msa1042430 | Msa1415310 | 0.803709 | 3.062306e-49 | -8.615850e-47 |
| Msa1044830 | Msa1415310 | 0.928775 | 1.791770e-92 | -8.615850e-47 |
| Msa1044840 | Msa1415310 | 0.928057 | 4.938908e-92 | -8.615850e-47 |
| Msa1060840 | Msa1415310 | 0.858172 | 9.889019e-63 | -8.615850e-47 |
| Msa1068420 | Msa1415310 | 0.818554 | 1.845138e-52 | -8.615850e-47 |
| Msa1077460 | Msa1415310 | 0.812274 | 4.603791e-51 | -8.615850e-47 |
| Msa1092990 | Msa1415310 | 0.900801 | 5.090024e-78 | -8.615850e-47 |
| Msa1096580 | Msa1415310 | 0.800625 | 1.319870e-48 | -8.615850e-47 |
| Msa1100980 | Msa1415310 | 0.919936 | 2.410839e-87 | -8.615850e-47 |
| Msa0247260 | Msa1415310 | 0.844209 | 8.708121e-59 | -8.615850e-47 |
| Msa0251320 | Msa1415310 | 0.818296 | 2.111364e-52 | -8.615850e-47 |
| Msa0256440 | Msa1415310 | 0.815454 | 9.167613e-52 | -8.615850e-47 |
| Msa0267000 | Msa1415310 | 0.919005 | 7.719589e-87 | -8.615850e-47 |
| Msa0267010 | Msa1415310 | 0.918274 | 1.907250e-86 | -8.615850e-47 |
| Msa0270520 | Msa1415310 | 0.823435 | 1.387376e-53 | -8.615850e-47 |
| Msa0282310 | Msa1415310 | 0.822910 | 1.839568e-53 | -8.615850e-47 |
| Msa0285810 | Msa1415310 | 0.863894 | 1.796420e-64 | -8.615850e-47 |
| Msa0304170 | Msa1415310 | 0.842987 | 1.848319e-58 | -8.615850e-47 |
| Msa0306460 | Msa1415310 | 0.835715 | 1.427607e-56 | -8.615850e-47 |
| Msa0313760 | Msa1415310 | 0.815461 | 9.137413e-52 | -8.615850e-47 |
| Msa0342240 | Msa1415310 | 0.911590 | 5.119781e-83 | -8.615850e-47 |
| Msa0353190 | Msa1415310 | 0.803171 | 3.959526e-49 | -8.615850e-47 |
| Msa0360510 | Msa1415310 | 0.868461 | 6.418745e-66 | -8.615850e-47 |
| Msa0363300 | Msa1415310 | 0.814886 | 1.226187e-51 | -8.615850e-47 |
| Msa1109440 | Msa1415310 | 0.877283 | 7.116412e-69 | -8.615850e-47 |
| Msa1112300 | Msa1415310 | 0.836756 | 7.763927e-57 | -8.615850e-47 |
| Msa1121200 | Msa1415310 | 0.882513 | 9.782054e-71 | -8.615850e-47 |
| Msa1135740 | Msa1415310 | 0.899785 | 1.404486e-77 | -8.615850e-47 |
| Msa1136090 | Msa1415310 | 0.842077 | 3.221673e-58 | -8.615850e-47 |
| Msa1146100 | Msa1415310 | 0.804154 | 2.475141e-49 | -8.615850e-47 |
| Msa1146110 | Msa1415310 | 0.908139 | 2.368247e-81 | -8.615850e-47 |
| Msa1149360 | Msa1415310 | 0.839834 | 1.250117e-57 | -8.615850e-47 |
| Msa1150370 | Msa1415310 | 0.855326 | 6.800819e-62 | -8.615850e-47 |
| Msa1164120 | Msa1415310 | 0.804369 | 2.232428e-49 | -8.615850e-47 |
| Msa1173920 | Msa1415310 | 0.891637 | 3.313175e-74 | -8.615850e-47 |
| Msa1178340 | Msa1415310 | 0.862597 | 4.527973e-64 | -8.615850e-47 |
| Msa1178720 | Msa1415310 | 0.805139 | 1.541791e-49 | -8.615850e-47 |
| Msa1182090 | Msa1415310 | 0.825497 | 4.539535e-54 | -8.615850e-47 |
| Msa1184420 | Msa1415310 | 0.826042 | 3.369882e-54 | -8.615850e-47 |
| Msa1187940 | Msa1415310 | 0.893255 | 7.449304e-75 | -8.615850e-47 |
| Msa1187950 | Msa1415310 | 0.863223 | 2.901275e-64 | -8.615850e-47 |
| Msa1192640 | Msa1415310 | 0.894883 | 1.621825e-75 | -8.615850e-47 |
| Msa1193730 | Msa1415310 | 0.824401 | 8.236521e-54 | -8.615850e-47 |
| Msa0485030 | Msa1415310 | 0.837305 | 5.620333e-57 | -8.615850e-47 |
| Msa0491590 | Msa1415310 | 0.892598 | 1.369840e-74 | -8.615850e-47 |
| Msa0502760 | Msa1415310 | 0.840020 | 1.118276e-57 | -8.615850e-47 |
| Msa0506190 | Msa1415310 | 0.811024 | 8.610849e-51 | -8.615850e-47 |
| Msa0506270 | Msa1415310 | 0.840619 | 7.798470e-58 | -8.615850e-47 |
| Msa0534540 | Msa1415310 | 0.832513 | 9.055852e-56 | -8.615850e-47 |
| Msa0548060 | Msa1415310 | 0.835094 | 2.049080e-56 | -8.615850e-47 |
| Msa0564890 | Msa1415310 | 0.885386 | 8.504534e-72 | -8.615850e-47 |
| Msa0596150 | Msa1415310 | 0.829631 | 4.621540e-55 | -8.615850e-47 |
| Msa0844500 | Msa1415310 | 0.816877 | 4.408763e-52 | -8.615850e-47 |
| Msa0845930 | Msa1415310 | 0.856774 | 2.563114e-62 | -8.615850e-47 |
| Msa0846210 | Msa1415310 | 0.827183 | 1.800366e-54 | -8.615850e-47 |
| Msa0846330 | Msa1415310 | 0.898172 | 6.879853e-77 | -8.615850e-47 |
| Msa0846350 | Msa1415310 | 0.880153 | 6.939863e-70 | -8.615850e-47 |
| Msa0848960 | Msa1415310 | 0.846458 | 2.144575e-59 | -8.615850e-47 |
| Msa0854980 | Msa1415310 | 0.834404 | 3.055960e-56 | -8.615850e-47 |
| Msa0858980 | Msa1415310 | 0.833883 | 4.129365e-56 | -8.615850e-47 |
| Msa0865320 | Msa1415310 | 0.916154 | 2.504771e-85 | -8.615850e-47 |
| Msa0872230 | Msa1415310 | 0.822880 | 1.869776e-53 | -8.615850e-47 |
| Msa0873460 | Msa1415310 | 0.814143 | 1.789888e-51 | -8.615850e-47 |
| Msa0885280 | Msa1415310 | 0.803842 | 2.874075e-49 | -8.615850e-47 |
| Msa0885290 | Msa1415310 | 0.863100 | 3.166633e-64 | -8.615850e-47 |
| Msa0887920 | Msa1415310 | 0.811464 | 6.910180e-51 | -8.615850e-47 |
| Msa0888370 | Msa1415310 | 0.890412 | 1.008506e-73 | -8.615850e-47 |
| Msa0888420 | Msa1415310 | 0.854943 | 8.786812e-62 | -8.615850e-47 |
| Msa0895270 | Msa1415310 | 0.805714 | 1.168062e-49 | -8.615850e-47 |
| Msa0896080 | Msa1415310 | 0.847123 | 1.410739e-59 | -8.615850e-47 |
| Msa0898080 | Msa1415310 | 0.820086 | 8.257066e-53 | -8.615850e-47 |
| Msa0914760 | Msa1415310 | 0.822519 | 2.268551e-53 | -8.615850e-47 |
| Msa0952350 | Msa1415310 | 0.823696 | 1.205478e-53 | -8.615850e-47 |
| Msa0952720 | Msa1415310 | 0.828682 | 7.849603e-55 | -8.615850e-47 |
| Msa0957860 | Msa1415310 | 0.824097 | 9.706612e-54 | -8.615850e-47 |
| Msa0957960 | Msa1415310 | 0.824582 | 7.465933e-54 | -8.615850e-47 |
| Msa0969260 | Msa1415310 | 0.805955 | 1.039526e-49 | -8.615850e-47 |
| Msa0979410 | Msa1415310 | 0.812263 | 4.629425e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415310 | MtrunA17_Chr1g0171561 | 72.549 | 51 | 4 | 1 | 18 | 58 | 361 | 411 | 6.07e-15 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 15 sgRNAs with CRISPR-Local
Find 33 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCATAATACTGCTCCCCTT+TGG | 0.399303 | tig0024199:+60488 | None:intergenic |
| GGCAAATTGTAGGGTGTGAA+AGG | 0.482250 | tig0024199:-60516 | Msa1415310:intron |
| CGAAGAGATGGCCGTACAGT+TGG | 0.497848 | tig0024199:-60408 | Msa1415310:CDS |
| AGCAGTATACTGCAGGTCTT+CGG | 0.516574 | tig0024199:-60431 | Msa1415310:CDS |
| AATAATGAAACAGCCGAAAG+AGG | 0.517338 | tig0024199:-60735 | None:intergenic |
| GTGTGAAAGGAGAAGCCAAA+GGG | 0.524133 | tig0024199:-60503 | Msa1415310:CDS |
| GCAGGTCTTCGGCGAAGAGA+TGG | 0.543464 | tig0024199:-60420 | Msa1415310:CDS |
| GCTCAATCTGTCCACGCCAT+CGG | 0.552859 | tig0024199:+60688 | None:intergenic |
| GCTGAGAAGCAGTATACTGC+AGG | 0.565896 | tig0024199:-60438 | Msa1415310:CDS |
| CAGTATACTGCTTCTCAGCA+CGG | 0.579616 | tig0024199:+60442 | None:intergenic |
| AAAAGATGGCGGAGGAGGAG+TGG | 0.584037 | tig0024199:-60711 | Msa1415310:CDS |
| GGCGGAGGAGGAGTGGCCGA+TGG | 0.593201 | tig0024199:-60704 | Msa1415310:CDS |
| AAAGACGTAATCCAACTGTA+CGG | 0.652711 | tig0024199:+60397 | None:intergenic |
| TGTGAAAGGAGAAGCCAAAG+GGG | 0.666256 | tig0024199:-60502 | Msa1415310:CDS |
| GGTGTGAAAGGAGAAGCCAA+AGG | 0.691576 | tig0024199:-60504 | Msa1415310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| TTTAGTTGTTCTTGAATGAC+TGG | - | tig0024199:60522-60541 | Msa1415310:intron | 30.0% | |
| CAGACTCAAAATGTGATAGT+AGG | + | tig0024199:60571-60590 | None:intergenic | 35.0% | |
| !! | ACTATCACATTTTGAGTCTG+AGG | - | tig0024199:60571-60590 | Msa1415310:intron | 35.0% |
| AAAGACGTAATCCAACTGTA+CGG | + | tig0024199:60732-60751 | None:intergenic | 35.0% | |
| ATATGACATAGCAGTGAGTC+TGG | + | tig0024199:60470-60489 | None:intergenic | 40.0% | |
| AACCTCCTCATGTTATTGTC+GGG | + | tig0024199:60501-60520 | None:intergenic | 40.0% | |
| CAACCTCCTCATGTTATTGT+CGG | + | tig0024199:60502-60521 | None:intergenic | 40.0% | |
| CAGCCGAAAGAGGAAAAAGA+TGG | - | tig0024199:60401-60420 | Msa1415310:CDS | 45.0% | |
| ! | CCGCCATCTTTTTCCTCTTT+CGG | + | tig0024199:60407-60426 | None:intergenic | 45.0% |
| CCGAAAGAGGAAAAAGATGG+CGG | - | tig0024199:60404-60423 | Msa1415310:CDS | 45.0% | |
| ! | AAAGAGGAAAAAGATGGCGG+AGG | - | tig0024199:60407-60426 | Msa1415310:CDS | 45.0% |
| TCGTGCCTATGGCAAATTGT+AGG | - | tig0024199:60600-60619 | Msa1415310:intron | 45.0% | |
| CGTGCCTATGGCAAATTGTA+GGG | - | tig0024199:60601-60620 | Msa1415310:intron | 45.0% | |
| CACACCCTACAATTTGCCAT+AGG | + | tig0024199:60608-60627 | None:intergenic | 45.0% | |
| GGCAAATTGTAGGGTGTGAA+AGG | - | tig0024199:60610-60629 | Msa1415310:intron | 45.0% | |
| GTGTGAAAGGAGAAGCCAAA+GGG | - | tig0024199:60623-60642 | Msa1415310:intron | 45.0% | |
| TGTGAAAGGAGAAGCCAAAG+GGG | - | tig0024199:60624-60643 | Msa1415310:intron | 45.0% | |
| GTCATAATACTGCTCCCCTT+TGG | + | tig0024199:60641-60660 | None:intergenic | 45.0% | |
| CAGTATACTGCTTCTCAGCA+CGG | + | tig0024199:60687-60706 | None:intergenic | 45.0% | |
| AGCAGTATACTGCAGGTCTT+CGG | - | tig0024199:60695-60714 | Msa1415310:intron | 45.0% | |
| GTCCTCCCGACAATAACATG+AGG | - | tig0024199:60493-60512 | Msa1415310:CDS | 50.0% | |
| CTCCTCATGTTATTGTCGGG+AGG | + | tig0024199:60498-60517 | None:intergenic | 50.0% | |
| CTCCCGACAATAACATGAGG+AGG | - | tig0024199:60496-60515 | Msa1415310:CDS | 50.0% | |
| TGAGGTTGTACTCGTGCCTA+TGG | - | tig0024199:60589-60608 | Msa1415310:intron | 50.0% | |
| GGTGTGAAAGGAGAAGCCAA+AGG | - | tig0024199:60622-60641 | Msa1415310:intron | 50.0% | |
| GCTGAGAAGCAGTATACTGC+AGG | - | tig0024199:60688-60707 | Msa1415310:intron | 50.0% | |
| !! | GAGGAAAAAGATGGCGGAGG+AGG | - | tig0024199:60410-60429 | Msa1415310:CDS | 55.0% |
| !! | AAAAGATGGCGGAGGAGGAG+TGG | - | tig0024199:60415-60434 | Msa1415310:CDS | 55.0% |
| GCTCAATCTGTCCACGCCAT+CGG | + | tig0024199:60441-60460 | None:intergenic | 55.0% | |
| CGAAGAGATGGCCGTACAGT+TGG | - | tig0024199:60718-60737 | Msa1415310:CDS | 55.0% | |
| GCAGGTCTTCGGCGAAGAGA+TGG | - | tig0024199:60706-60725 | Msa1415310:CDS | 60.0% | |
| AGGAGGAGTGGCCGATGGCG+TGG | - | tig0024199:60427-60446 | Msa1415310:CDS | 70.0% | |
| GGCGGAGGAGGAGTGGCCGA+TGG | - | tig0024199:60422-60441 | Msa1415310:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024199 | gene | 60395 | 60753 | 60395 | ID=Msa1415310;Name=Msa1415310 |
| tig0024199 | mRNA | 60395 | 60753 | 60395 | ID=Msa1415310-mRNA-1;Parent=Msa1415310;Name=Msa1415310-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|0.5|1|1|2|0|60 |
| tig0024199 | exon | 60703 | 60753 | 60703 | ID=Msa1415310-mRNA-1:exon:22328;Parent=Msa1415310-mRNA-1 |
| tig0024199 | exon | 60395 | 60526 | 60395 | ID=Msa1415310-mRNA-1:exon:22327;Parent=Msa1415310-mRNA-1 |
| tig0024199 | CDS | 60703 | 60753 | 60703 | ID=Msa1415310-mRNA-1:cds;Parent=Msa1415310-mRNA-1 |
| tig0024199 | CDS | 60395 | 60526 | 60395 | ID=Msa1415310-mRNA-1:cds;Parent=Msa1415310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
